Citrus Sinensis ID: 048639
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1139 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPK2 | 1273 | ABC transporter B family | yes | no | 0.947 | 0.847 | 0.413 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.960 | 0.850 | 0.423 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.960 | 0.891 | 0.408 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.965 | 0.878 | 0.412 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.955 | 0.872 | 0.410 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.954 | 0.873 | 0.402 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.949 | 0.841 | 0.391 | 0.0 | |
| Q9FWX7 | 1278 | ABC transporter B family | no | no | 0.970 | 0.864 | 0.398 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.958 | 0.891 | 0.399 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.955 | 0.839 | 0.388 | 0.0 |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/1134 (41%), Positives = 707/1134 (62%), Gaps = 55/1134 (4%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT+ STG+VI+ ++S + V++DA+ EK+G+FL + F +G I W++SL+
Sbjct: 167 DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226
Query: 84 IFLVVPMILVIGATYT-KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+VP+I + G Y + ++ + Y+ +A + E+ I ++TV AF GE ++
Sbjct: 227 TLSIVPLIALAGGIYAFVAIGLIARVRKSYI-KAGEIAEEVIGNVRTVQAFTGEERAVRL 285
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
+ + ++ R L KG+GLG V F WAL++W +VVV + GG+ ++
Sbjct: 286 YREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTML 345
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRD 261
+++ ++L AAPD+ F +AKAA + IF++I+R S+K G++L K+DG+I +D
Sbjct: 346 NVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKD 405
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
F+YPSRPD +I +L+IPAGK+VALVG SG GKSTVISL+ RFY+P +G +L+D
Sbjct: 406 ATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGN 465
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
NI +LD+K LR IG V+QEP+LF ++ +NI G DA E+I A+ ++ A SFI+ L
Sbjct: 466 NISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNL 525
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ + T++G+RG+QLSGGQKQRIAI+RAIVKNP ILLLDEATSALD+ESEK VQEAL+R
Sbjct: 526 PEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 585
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLRPID 500
M GRT +++AHR+ST+ NAD+IAVV +G++ E G H +L+ D Y+ L +Q
Sbjct: 586 MVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQ------ 639
Query: 501 DSRTKASTVESTSTEQQISVVEQLEEPEESK--RELSAS-----TGQEEV-------KGK 546
E+ S ++ S+ L P K RELS + + +E V K
Sbjct: 640 ---------ETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGADPSK 690
Query: 547 RTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD--PQAKQEVG 604
+ + + + + + V GT+ A +G PLF + V+YY + ++E+
Sbjct: 691 KVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIK 750
Query: 605 WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGS 664
++ F + +L +T++H FG +GE+ +R ++ +L+NEI WF++ N +
Sbjct: 751 KIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSM 810
Query: 665 LTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGL 724
L SR+ SD +++K I+ DR ++++Q + ++ + I++ +++WR+ LV A P G +
Sbjct: 811 LASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHI 870
Query: 725 IQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQ-KAKISLEKTKRSSR 783
+ QG+ GD A+ + L ES SNIRTVA+FC EE IL+ ++ LE +K S R
Sbjct: 871 SEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFR 930
Query: 784 KESIK---YGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSIT 840
+ I YGV Q F ++ +ALWY + L+DK A F+ ++ + + +T ++
Sbjct: 931 RGQIAGLFYGVSQFFIFS----SYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMG 986
Query: 841 ELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPE 900
E L P ++ ++A FEILDRKT+I + E E ++G IE + + F+YPSRP+
Sbjct: 987 ETLALAPDLLKGNQMVASVFEILDRKTQIVGETSE--ELNNVEGTIELKGVHFSYPSRPD 1044
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
V + +F L + G +ALVG SG+GKSSV++L+LRFYDP G ++I+GK IK+ +L+ L
Sbjct: 1045 VVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKAL 1104
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGE 1020
R IGLVQQEP LF+ +I NI YGNE AS++E+VE + AN H FI+SLP+GY T VGE
Sbjct: 1105 RKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGE 1164
Query: 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGEL 1080
+G Q+SGGQ+QRIAIAR +LK PAI+LLDEATSALD ESERV+ AL+ L +
Sbjct: 1165 RGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRL---------M 1215
Query: 1081 ASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
A+RTT + VAHRL+T+ N+D I V+ G++VE GSH LV G Y +L LQ
Sbjct: 1216 ANRTT-VVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQ 1268
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/1145 (42%), Positives = 707/1145 (61%), Gaps = 51/1145 (4%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FDT++ T V+ +++ +++DAI EKLG+F+ ATF SG ++ W+++L+ V
Sbjct: 138 FDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAV 197
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
VP+I VIG +T ++ +S LS+A +++EQT+ QI+ V AFVGE +++S +
Sbjct: 198 VPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAYSSAL 257
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFG 207
+ L KG+GLG V FCC+AL++W G +V + GG +A + +++ G
Sbjct: 258 KIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIG 317
Query: 208 AIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRDVCFAY 266
+AL +AP M F +AK A +IF++I KP I +S+ G EL+ + G +++++V F+Y
Sbjct: 318 GLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSY 377
Query: 267 PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL 326
PSRPD IL F LS+PAGK +ALVGSSG GKSTV+SL+ RFYDP++G +L+D ++K L
Sbjct: 378 PSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTL 437
Query: 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
L+ LR+ IG VSQEP+LF S+ +NI +G DAD +I A+ +ANAHSFI +LPD +
Sbjct: 438 KLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFD 497
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
T++G+RG+QLSGGQKQRIAIARA++KNP ILLLDEATSALDSESEKLVQEAL+R M GRT
Sbjct: 498 TQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRT 557
Query: 447 VILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD--FYNRLFTMQN-LRPIDDSR 503
++IAHR+STI AD++AV++ G V+E GTH L + Y +L MQ S
Sbjct: 558 TLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSN 617
Query: 504 TKASTVESTSTEQQIS--------------VVEQLEEPEESKRELSASTG------QEEV 543
+ S+ +S +S +L + S LS E++
Sbjct: 618 ARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKL 677
Query: 544 KGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAK--- 600
K F +N E ++G+V + G F + + + YY+P +
Sbjct: 678 AFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMI 737
Query: 601 QEVGWYSLAFSLVGLFS--LFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKP 658
+++ Y + L+GL S L +TLQH F+ +VGE +R + + VL+NE+AWF++
Sbjct: 738 KQIDKY--CYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQE 795
Query: 659 QNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718
+N++ + +R+ D + V++ I DR+SVIVQ + +L+A V+ WR+ALV AV P
Sbjct: 796 ENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPV 855
Query: 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKT 778
++Q GFSGD AAH + L E+ +N+RTVA+F E I++ +LE
Sbjct: 856 VVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPP 915
Query: 779 -KRSSRKESIK---YGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSL 834
KR K I YGV Q CL+ ++A+ LWY + L+ + F IR + + +
Sbjct: 916 LKRCFWKGQIAGSGYGVAQ---FCLY-ASYALGLWYASWLVKHGISDFSKTIRVFMVLMV 971
Query: 835 TVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSE-SGRIKGRIEFQNIKF 893
+ E TL P I + FE+LDRKTEIEPD P+++ R++G +E ++I F
Sbjct: 972 SANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDF 1031
Query: 894 NYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953
+YPSRP++ + + SL+ G +ALVGPSG GKSSV++L+ RFY+P+ G ++IDGK I+
Sbjct: 1032 SYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIR 1091
Query: 954 EYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDG 1013
+YNL+ +R I +V QEP LF +I NI YG+E A+EAEI++ + A+ H FIS+LP+G
Sbjct: 1092 KYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEG 1151
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
Y T VGE+G QLSGGQKQRIAIAR L+++ IMLLDEATSALDAESER + AL+
Sbjct: 1152 YKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALD----- 1206
Query: 1074 SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA-ESQGVYSRLYQ 1132
+C S T I VAHRL+T+ N+ VI V+D G+V E GSHS L+ G+Y+R+ Q
Sbjct: 1207 -QAC----SGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQ 1261
Query: 1133 LQAFS 1137
LQ F+
Sbjct: 1262 LQRFT 1266
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1144 (40%), Positives = 704/1144 (61%), Gaps = 50/1144 (4%)
Query: 10 WHPKGNRVLMKI---------GGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFL 60
W G R KI ++ FDT++STG+VI+ ++S + V++DAI EK+G+F+
Sbjct: 108 WMHTGERQAAKIRKAYLRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFM 167
Query: 61 SSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMI 120
+ F +G I W++SL+ +VP I + G Y + + +A +
Sbjct: 168 HFISRFIAGFAIGFASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIA 227
Query: 121 EQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180
E+ I ++TV AF GE + S+ + R L KG+GLG V F WAL+I
Sbjct: 228 EEVIGNVRTVQAFTGEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLI 287
Query: 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPR 240
W ++VV + GGE +++++ ++L AAPD+ F +A AA + IFQ+I+R
Sbjct: 288 WFTSIVVHKGIANGGESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERN-- 345
Query: 241 ISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKST 300
+ G++L ++G+I +DV F YPSRPD +I + IPAGK+VALVG SG GKST
Sbjct: 346 -TEDKTGRKLGNVNGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKST 404
Query: 301 VISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA 360
+ISL+ RFY+P++G +++D +I+ LDLK LR +IG V+QEP LF ++ +NI G DA
Sbjct: 405 MISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDA 464
Query: 361 DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
E+I NA+ ++ A SFI+ LP+ + T++G+RG+QLSGGQKQRI+I+RAIVKNP ILLLD
Sbjct: 465 TSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLD 524
Query: 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480
EATSALD+ESEK+VQEAL+R M GRT +++AHR+ST+ NAD+IAVV G++ E+G+H L
Sbjct: 525 EATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDEL 584
Query: 481 LQTSD-FYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTG 539
+ D Y+ L +Q + + T + V ST ++ + E +S + +
Sbjct: 585 ISNPDGAYSSLLRIQEAASPNLNHTPSLPV-STKPLPELPITETTSSIHQSVNQPDTTKQ 643
Query: 540 QEEVKGKRTTIFFRIW---FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY- 595
+ G+ ++ W C GT+ + +G PLF I V+YY
Sbjct: 644 AKVTVGRLYSMIRPDWKYGLC-----------GTLGSFIAGSQMPLFALGIAQALVSYYM 692
Query: 596 DPQAKQ-EVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAW 654
D + Q EV S+ F + ++ HT++H FG++GE+ +R+ +++ +LRNEI W
Sbjct: 693 DWETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGW 752
Query: 655 FEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWA 714
F+K N + L SR+ SD ++++ I+ DR +++++ + ++ A I+S +++WR+ LV A
Sbjct: 753 FDKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLA 812
Query: 715 VMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQ-KAKI 773
P G + + QG+ G+ + A+ + L ES SNIRTV +FC EE +L +K
Sbjct: 813 TYPLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKE 872
Query: 774 SLEKTKRSSRK---ESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQ 830
LE ++RS R+ I YGV Q F ++ +ALWY ++L++K ++F ++ +
Sbjct: 873 LLEPSERSFRRGQMAGILYGVSQFFIFS----SYGLALWYGSILMEKGLSSFESVMKTFM 928
Query: 831 IFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQN 890
+ +T + E+ L P ++ ++ FE+LDR+T++ D E E ++G IE +
Sbjct: 929 VLIVTALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGDTGE--ELSNVEGTIELKG 986
Query: 891 IKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950
+ F+YPSRP+VT+ ++F+L + G +ALVG SG+GKSSVL+L+LRFYDP GII+IDG+
Sbjct: 987 VHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQ 1046
Query: 951 GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSL 1010
IK+ L+ LR IGLVQQEP LF+ +I NI YG E ASE+E++E +K AN H FISSL
Sbjct: 1047 DIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSL 1106
Query: 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070
P+GY T VGE+G Q+SGGQ+QRIAIAR +LK P I+LLDEATSALD ESERV+ AL+ L
Sbjct: 1107 PEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRL 1166
Query: 1071 NPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130
+ RTT + VAHRL+T+ NSD+I V+ G+++E GSH+ LV G YS+L
Sbjct: 1167 ---------MRDRTT-VVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKL 1216
Query: 1131 YQLQ 1134
LQ
Sbjct: 1217 ISLQ 1220
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/1129 (41%), Positives = 695/1129 (61%), Gaps = 29/1129 (2%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
+VG FDTD TG ++ VS+ +++DAI EK+G+F+ +TF +G+++ + W+++LL
Sbjct: 131 DVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALL 190
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
V+P I G Y + +++ + A + EQ I+Q++TV+++VGE + ++
Sbjct: 191 SVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAY 250
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
SD + + + + KG+GLG + WAL+ W V + ++ GG+ A+ S
Sbjct: 251 SDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFS 310
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSS-KGKELEKIDGNIDIRDV 262
+ G ++L + ++ F++ KAAG+++ ++I ++P I GK L+++ GNI+ +DV
Sbjct: 311 AIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDV 370
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YPSRPD +I + F++ P+GK VA+VG SG GKSTV+SL+ RFYDP++G IL+D +
Sbjct: 371 TFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVE 430
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
IK L LK LR+ IG V+QEP+LF ++++NI G DA ++ A+ ANAHSFI+ LP
Sbjct: 431 IKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLP 490
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
Y T++G+RGVQLSGGQKQRIAIARA++K+P ILLLDEATSALD+ SE +VQEAL+R M
Sbjct: 491 KGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVM 550
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDS 502
GRT +++AHR+ TI N D IAV++ GQV ETGTH L+ S Y L Q + D
Sbjct: 551 VGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDF 610
Query: 503 RTKASTVESTSTEQQISV-VEQLEEPEESKRELSAS--TGQE-----------EVKGKRT 548
+ ST + ST S+ + L S R LS S TG + + K +
Sbjct: 611 -SNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAP 669
Query: 549 TIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIIT-IGVAYYDPQAKQE--VGW 605
+F LN E ++G V + SG P F + I V YY E
Sbjct: 670 ENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKE 729
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
Y + GL+++ + +QHYFF ++GE T +RR + + +LRNE+ WF++ ++++ +
Sbjct: 730 YVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLI 789
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725
+R+ +D + VK+ I++R+SVI+Q ++S+L + IV+ +V+WR++L+ P +
Sbjct: 790 AARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFA 849
Query: 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785
Q S +GF+GD+A AH + + E SNIRTVA+F + IL L ++ S
Sbjct: 850 QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYR 909
Query: 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTL 845
S G + G S + A+ LWY A L+ K +TF I+ + + +T S+ E +L
Sbjct: 910 SQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSL 969
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLN 905
P +I + F +LDR+T I+PD ++ I+G IEF+++ F YPSRP+V V
Sbjct: 970 APEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFR 1029
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965
+F+L+I G ALVG SG+GKSSV+A++ RFYDP G ++IDGK I+ NL+ LR +IG
Sbjct: 1030 DFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIG 1089
Query: 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025
LVQQEP LF+ +I +NI YG + A+E+E+++ ++ AN H FIS LP+GY T VGE+G QL
Sbjct: 1090 LVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQL 1149
Query: 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTT 1085
SGGQKQRIAIAR +LK P ++LLDEATSALDAESE V+ ALE L + RTT
Sbjct: 1150 SGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERL---------MRGRTT 1200
Query: 1086 QITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+ VAHRL+T+ D I V+ G +VE GSHS LV+ +G YSRL QLQ
Sbjct: 1201 -VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQ 1248
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1122 (41%), Positives = 683/1122 (60%), Gaps = 34/1122 (3%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FDT+ I +SS +++DAIG+K GH L F +G +I + W+++LL V
Sbjct: 142 FDTEARDSNFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGV 201
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
VP+I + G Y M+ +S ++A + E+ +SQ++TV+AFVGE +KS+S+ +
Sbjct: 202 VPLIAIAGGGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSL 261
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFG 207
K + +S+ L KG+G+G+ S+ FC WAL+ W +++V ++ G + ++++++
Sbjct: 262 KKALKLSKRSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYS 321
Query: 208 AIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS--SKGKELEKIDGNIDIRDVCFA 265
AL A P + ++ + A IF++I S G L+ + G I+ V FA
Sbjct: 322 GFALGQAVPSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFA 381
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
YPSRP+ ++ + S +I +GK A VG SG GKST+IS+V RFY+P +G+IL+D +IK+
Sbjct: 382 YPSRPN-MVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKN 440
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
L LK LR+ +G VSQEP+LF ++ NI +G A+ +QI A+ ANA SFI LP+ Y
Sbjct: 441 LKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGY 500
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
+T++G+ G QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESEK+VQ+AL+ M+ R
Sbjct: 501 NTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKR 560
Query: 446 TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ------NLRPI 499
T I+IAHR+STI N D I V+ DGQV ETG+H L+ Y L Q NLR +
Sbjct: 561 TTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSV 620
Query: 500 --DDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIW-- 555
+ R++A + S E+ E+++++ S G++ + IW
Sbjct: 621 MYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKD---SKGEDLISSSSM-----IWEL 672
Query: 556 FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEVGWYSLAFSL 612
LN E L ++G++ A +G LF + + +Y P K+EV ++ F
Sbjct: 673 IKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVG 732
Query: 613 VGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSD 672
G+ + + LQHYF+ ++GE+ + +R +L++ +L NEI WF+ +N+ GSLTS + +D
Sbjct: 733 AGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAAD 792
Query: 673 TSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQG 732
++V++ I+DR+S IVQ +S + A ++ WR+A V A P L + +G
Sbjct: 793 ATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKG 852
Query: 733 FSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVI 792
F GD A++ SL E+ SNIRTVA+F E+ I ++ L K +S+ G
Sbjct: 853 FGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFG 912
Query: 793 QGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISA 852
G S CL ++A+ LWY +VLI + + F D I+++ + +T S+ E L P ++
Sbjct: 913 YGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKG 972
Query: 853 ITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIE 912
L F +L R+TEI PD P S IKG IEF+N+ F YP+RPE+ + N +L++
Sbjct: 973 TQALGSVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVS 1032
Query: 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL 972
G +A+VGPSG+GKS+V+ L++RFYDP+ G + IDG IK NLR LR ++ LVQQEP
Sbjct: 1033 AGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPA 1092
Query: 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032
LFS SI NI YGNE ASEAEI+E +K AN H+FIS + +GY T VG+KG QLSGGQKQR
Sbjct: 1093 LFSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQR 1152
Query: 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
+AIAR +LK P+++LLDEATSALD +E+ + AL+ L + RTT I VAHR
Sbjct: 1153 VAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKL---------MKGRTT-ILVAHR 1202
Query: 1093 LATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
L+T+ +D IVV+ KG+VVE GSH LV++S G Y +L LQ
Sbjct: 1203 LSTIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/1122 (40%), Positives = 687/1122 (61%), Gaps = 35/1122 (3%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FDT+ +I +SS +++DAIG+K H L + F +G +I + W+++LL V
Sbjct: 141 FDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGV 200
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
VP+I + G Y M+ +S ++A + E+ +SQ++TV+AFVGE +KS+S+ +
Sbjct: 201 VPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSL 260
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFG 207
K + + + L KG+G+G+ S+ FC WAL++W +++V ++ G + +++++F
Sbjct: 261 KKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFS 320
Query: 208 AIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS--SKGKELEKIDGNIDIRDVCFA 265
AL AAP + + + A IF++I S +G L+ + G I+ + V FA
Sbjct: 321 GFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFA 380
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
YPSRP+ ++ + S +I +GK A VG SG GKST+IS+V RFY+P++G+IL+D +IK
Sbjct: 381 YPSRPN-MVFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKS 439
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
L LK R+ +G VSQEP+LF ++ NI +G +A+ +QI A+ ANA SFI LP+ Y
Sbjct: 440 LKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGY 499
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
+T++G+ G QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESEK+VQ+AL+ M+ R
Sbjct: 500 NTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKR 559
Query: 446 TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
T I++AHR+STI N D I V+ DGQV ETG+H L+ Y L Q P ++SR+
Sbjct: 560 TTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQENSRS- 618
Query: 506 ASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFR----IW--FCLN 559
+ S + + Q S+R S QE+ K + F IW LN
Sbjct: 619 ---IMSETCKSQAGSSSSRRV-SSSRRTSSFRVDQEKTKNDDSKKDFSSSSMIWELIKLN 674
Query: 560 ERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEVGWYSLAFSLVGLF 616
E ++G++ A +G PLF I + A+Y P K++V ++ F+ G+
Sbjct: 675 SPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIV 734
Query: 617 SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMV 676
+ + LQHYF+ ++GE+ + +R +L++ +L NEI WF+ +N+ GSLTS + +D ++V
Sbjct: 735 TAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLV 794
Query: 677 KAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGD 736
++ ++DR+S IVQ +S + A ++ WR+A V A P L + +GF GD
Sbjct: 795 RSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGD 854
Query: 737 SAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEK-TKRSSRKESIK---YGVI 792
A++ S+ E+ +NIRTVA++ E+ I ++ L K TK + + I YG+
Sbjct: 855 YTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLS 914
Query: 793 QGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISA 852
Q + C ++A+ LWY +VLI+ K+ F D I+++ + +T S++E L P ++
Sbjct: 915 QFLAFC----SYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKG 970
Query: 853 ITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIE 912
L F +L R+T+I PD P S ++KG IEF+N+ F YP+RPE+ + N +L++
Sbjct: 971 TQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVS 1030
Query: 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL 972
G +A+VGPSG+GKS+V+ L++RFYDP+ G + IDG+ IK NLR LR ++ LVQQEP
Sbjct: 1031 AGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPA 1090
Query: 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032
LFS +I NI YGNE ASEAEI+E +K AN H+FI + +GY T G+KG QLSGGQKQR
Sbjct: 1091 LFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQR 1150
Query: 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
+AIAR +LK P+++LLDEATSALD SE+++ AL+ L + RTT + VAHR
Sbjct: 1151 VAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKL---------MKGRTT-VLVAHR 1200
Query: 1093 LATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
L+T+ +D + V+ KG VVE GSH LV+ G Y +L LQ
Sbjct: 1201 LSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQ 1242
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1161 (39%), Positives = 708/1161 (60%), Gaps = 79/1161 (6%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FD D +TG+V+ +S +I+DA+GEK+G + ATF G +IA + W ++L+
Sbjct: 150 DIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLV 209
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ +P++++ GA + ++ ++A +++EQTI I+TV +F GE+ I ++
Sbjct: 210 MLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNY 269
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQS----VTFCCWALIIWVGAVVVTAKRSTGGEVLA 199
+K ++ + +I+G G+ V FC +AL +W G ++ K TGG+VL
Sbjct: 270 ----NKHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLN 325
Query: 200 AVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNID 258
++++L G+++L +P + F +AA +++F+ I+R+P I SYS+ GK L+ I G+I+
Sbjct: 326 IIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIE 385
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
++DV F YP+RPD+ I +GFSL I +G VALVG SG GKSTV+SL+ RFYDP GD+LI
Sbjct: 386 LKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLI 445
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
D +N+K+ LK +R IG VSQEP LFT S+ DNI G DA E+I A+ +ANA F+
Sbjct: 446 DGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFV 505
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+LP T +G+ G QLSGGQKQRIA+ARAI+K+P ILLLDEATSALD+ESE++VQEAL
Sbjct: 506 DKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEAL 565
Query: 439 ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLR 497
+R M RT +++AHR+ST+ NADMIAV+ G++ E G+H LL+ + Y++L +Q +
Sbjct: 566 DRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEK 625
Query: 498 PIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSAS-------------------- 537
D E+ + EQ++S +E ++ K L S
Sbjct: 626 KSD---------ENAAEEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFG 676
Query: 538 -----------------TGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISK 580
T Q + + K+ +IF RI LN+ E+ L++G+++AA +G+
Sbjct: 677 FPAGIDGNVVQDQEEDDTTQPKTEPKKVSIF-RIA-ALNKPEIPVLILGSISAAANGVIL 734
Query: 581 PLFGFFIITIGVAYYDP--QAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638
P+FG I ++ A++ P + K++ ++++ F ++G S+ + Q +FF + G K +
Sbjct: 735 PIFGILISSVIKAFFQPPKKLKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQR 794
Query: 639 LRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIAT 698
+R + V+ E+ WF++P+N +G++ +R+ +D + ++ ++ D ++ VQ +SSIL
Sbjct: 795 IRSMCFEKVVHMEVGWFDEPENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGL 854
Query: 699 IVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTV 758
I++ + W++A V A++P + G + K +GFS D+ + E + +++ +IRTV
Sbjct: 855 IIAFLACWQLAFVVLAMLPLIALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTV 914
Query: 759 ASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKK 818
ASFC E+ ++ E ++ ++ I G+ GFS + ++A + + A L+D
Sbjct: 915 ASFCAEDKVMNMYSKKCEGPMKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDG 974
Query: 819 QATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSE 878
+ TF R + ++ +I++ +L P A A F I+DR+++I+P S E
Sbjct: 975 KTTFDSVFRVFFALTMAAMAISQSSSLSPDSSKADVAAASIFAIMDRESKIDP----SVE 1030
Query: 879 SGRI----KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL 934
SGR+ KG IE +++ F YP+RP+V + + L I G VALVG SG+GKS+V+ALL
Sbjct: 1031 SGRVLDNVKGDIELRHVSFKYPARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALL 1090
Query: 935 LRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-ASEAE 993
RFYDP+ G I +DG IK L+ LR Q GLV QEP+LF+ +IR NI YG ASE+E
Sbjct: 1091 QRFYDPDSGEITLDGVEIKSLRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESE 1150
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
IV ++ +N H FIS L GYDT+VGE+G QLSGGQKQR+AIAR ++K P ++LLDEATS
Sbjct: 1151 IVSSAELSNAHGFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATS 1210
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113
ALDAESERV+ AL+ + + +RTT I VAHRL+T+ N+DVI V+ G +VE
Sbjct: 1211 ALDAESERVVQDALDRV---------MVNRTT-IVVAHRLSTIKNADVIAVVKNGVIVEK 1260
Query: 1114 GSHSTLVAESQGVYSRLYQLQ 1134
G H TL+ GVY+ L QL
Sbjct: 1261 GKHDTLINIKDGVYASLVQLH 1281
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/1143 (39%), Positives = 696/1143 (60%), Gaps = 38/1143 (3%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++G FD + +TG+V+ +S +I+DA+GEK+G F+ +TF G ++A I W ++L+
Sbjct: 147 DIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLV 206
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ +P++ + GA + S+ ++A +++EQTI I+TV +F GE+ I S+
Sbjct: 207 MLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSY 266
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
+ S + G+GLG+ V F +AL IW G ++ K TGG V+ ++
Sbjct: 267 KKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIII 326
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRDV 262
++ G+++L +P + F +AA +++F+ I+RKP I +Y GK LE I G+I+++DV
Sbjct: 327 VVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDV 386
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YP+RPD+ I GFSL IP+G ALVG SG GKSTVISL+ RFYDP +G +LID +N
Sbjct: 387 HFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVN 446
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
+K+ LK +R IG VSQEP LF+ S+M+NI G +A E+I A+ +ANA FI +LP
Sbjct: 447 LKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLP 506
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
T +G+ G QLSGGQKQRIAIARAI+K+P ILLLDEATSALD+ESE++VQEAL+R M
Sbjct: 507 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVM 566
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLRP--- 498
RT +++AHR+ST+ NADMIAV+ G++ E G+H LL+ S+ Y++L +Q +
Sbjct: 567 VNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVK 626
Query: 499 --------------IDDSRTKASTVESTSTEQQISVV---EQLEEPEESKRELSASTGQE 541
+ S S+V ++S ++V+ L+ S+R TG
Sbjct: 627 TSELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTA 686
Query: 542 EVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP--QA 599
+ RI LN+ E+ L++GTVAAA +G PLFG I + A++ P +
Sbjct: 687 SQEPLPKVSLTRIA-ALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHEL 745
Query: 600 KQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQ 659
K++ ++++ F +G+ SL Q Y F V G K + +R + + E+AWF++PQ
Sbjct: 746 KRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQ 805
Query: 660 NDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCH 719
N +G++ +R+ +D ++++A++ D +S+ VQ ++S I++ W +AL+ ++P
Sbjct: 806 NSSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLI 865
Query: 720 FIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTK 779
I G +Q K +GFS D+ + + E + +++ +IRTVASFC EE ++Q K E
Sbjct: 866 GINGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPI 925
Query: 780 RSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSI 839
+ K+ G+ GFS + +A + + A L++ + TF + + + ++ I
Sbjct: 926 KDGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGI 985
Query: 840 TELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRP 899
++ T P A A F I+DRK++I+ + +KG IE +++ F YP+RP
Sbjct: 986 SQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARP 1045
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
++ + + L I G VALVG SG+GKS+V++LL RFYDP+ G I +DG +K+ L+
Sbjct: 1046 DIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKW 1105
Query: 960 LRSQIGLVQQEPLLFSCSIRNNICYGN---EAASEAEIVEVSKKANIHDFISSLPDGYDT 1016
LR Q+GLV QEP+LF+ +IR NI YG EAA+E+EI+ ++ AN H FISS+ GYDT
Sbjct: 1106 LRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDT 1165
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
VVGE+G QLSGGQKQR+AIAR ++K P I+LLDEATSALDAESERV+ AL+ +
Sbjct: 1166 VVGERGIQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRV------ 1219
Query: 1077 CGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ +RTT I VAHRL+T+ N+DVI V+ G + E G+H TL+ GVY+ L QL
Sbjct: 1220 ---MVNRTT-IVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMT 1275
Query: 1137 SGN 1139
+ N
Sbjct: 1276 ASN 1278
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/1128 (39%), Positives = 676/1128 (59%), Gaps = 36/1128 (3%)
Query: 24 EVGAFDTDL-STGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSL 82
+VG FD + ST VIT VSS VI+D + EKL +FL + + F + ++ + W +++
Sbjct: 113 DVGYFDLHVTSTSDVITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTI 172
Query: 83 LIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+ F + ++L+ G Y + + +S +EA S+ EQ IS ++TV+AF E+ I+
Sbjct: 173 VGFPFIILLLIPGLMYGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEK 232
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
FS + + + + L KG+ +G +T+ W + W G+ +V S GG V + ++
Sbjct: 233 FSTALQGSVKLGLRQGLAKGIAIGS-NGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIV 291
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRD 261
+ FG +L + +++ F++A G I +VI R P I S + +G+ LEK G ++
Sbjct: 292 CVTFGGTSLGQSLSNLKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNH 351
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V F YPSRP+ I L +P+GK VALVG SG GKSTVISL+ RFYDP G+ILID L
Sbjct: 352 VKFTYPSRPETPIFDDLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGL 411
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
I L +K LR +G VSQEP LF S+ +NI G DA +++ A+ +NAHSFISQ
Sbjct: 412 PINKLQVKWLRSQMGLVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQF 471
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ Y T++G+RGVQLSGGQKQRIAIARAI+K+P ILLLDEATSALDSESE++VQEAL+ A
Sbjct: 472 PNSYQTQVGERGVQLSGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNA 531
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDD 501
GRT I+IAHR+STI NAD+I VV +G++ ETG+H LL+ D + ++ L+ +D+
Sbjct: 532 SIGRTTIVIAHRLSTIRNADVICVVHNGRIIETGSHEELLEKLD--GQYTSLVRLQQVDN 589
Query: 502 SRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVK---------GKRTTIFF 552
+ +VE E Q S + + + + S +E ST V+ GK F
Sbjct: 590 KESDHISVE----EGQASSLSK--DLKYSPKEFIHSTSSNIVRDFPNLSPKDGKSLVPSF 643
Query: 553 RIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY---DPQAKQEVGWYSLA 609
+ +N E + G + AA G +P++ + ++ Y+ Q K++ Y L
Sbjct: 644 KRLMSMNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLL 703
Query: 610 FSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRI 669
F + LF+ ++ QHY F +GE +R + +L E+ WF+K +N +G++ SR+
Sbjct: 704 FVGLALFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRL 763
Query: 670 VSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729
D +MV++++ DRMS++VQ IS++ I + LV+ WR ++V +V P + Q
Sbjct: 764 AKDANMVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVL 823
Query: 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789
+ S ++ E L +E+ SNIRT+ +F +E I+ K+ E ++ S ++S
Sbjct: 824 LKSMSRNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLA 883
Query: 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTV 849
G++ G S L A+ WY LI + ++ + + IF+ T I E T+ +
Sbjct: 884 GIMLGTSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDL 943
Query: 850 ISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSL 909
+ +A F +LDR T IEP+ P+ ++KG+I F N+ F YP+RP+V + NFS+
Sbjct: 944 VKGSDAVASVFAVLDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSI 1003
Query: 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQ 969
IE G A+VGPSG+GKS++++L+ RFYDP +GI+ IDG+ I+ +LR LR I LV Q
Sbjct: 1004 DIEDGKSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQ 1063
Query: 970 EPLLFSCSIRNNICYGNEAA--SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027
EP LF+ +IR NI YG + E+EI+E +K AN HDFI+SL +GYDT G++G QLSG
Sbjct: 1064 EPTLFAGTIRENIMYGGASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSG 1123
Query: 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQI 1087
GQKQRIAIAR +LK P+++LLDEATSALD++SE V+ ALE L + RT+ +
Sbjct: 1124 GQKQRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERL---------MVGRTS-V 1173
Query: 1088 TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES-QGVYSRLYQLQ 1134
+AHRL+T+ D I V++ G VVE G+HS+L+A+ +G Y L LQ
Sbjct: 1174 VIAHRLSTIQKCDTIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/1146 (38%), Positives = 700/1146 (61%), Gaps = 58/1146 (5%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FD + +TG+V+ +S +I+DA+GEK+G + +TF G +IA W ++L+
Sbjct: 169 DIAFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLV 228
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ +P++++ GA ++ +++ ++A ++EQT+ I+TV +F GE+ I ++
Sbjct: 229 MVSSIPLLVMSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNY 288
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
+ + E G+GLG V FC +AL +W G ++ K TGG+VL + +
Sbjct: 289 NKHLVSAYRAGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFA 348
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS-SKGKELEKIDGNIDIRDV 262
+L G+++L A+P + F +AA +++F+ I+RKP I S + GK L+ I G+I++ +V
Sbjct: 349 VLTGSMSLGQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNV 408
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YP+RP++ I +GFSLSI +G VALVG SG GKSTV+SL+ RFYDP +G++ ID +N
Sbjct: 409 NFSYPARPEEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGIN 468
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
+K+ LK +R IG VSQEP LFT S+ +NI G +A E+I A+ +ANA FI +LP
Sbjct: 469 LKEFQLKWIRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLP 528
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
T +G+ G QLSGGQKQRIA+ARAI+K+P ILLLDEATSALD+ESE++VQEAL+R M
Sbjct: 529 QGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIM 588
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLRPIDD 501
RT +++AHR+ST+ NADMIAV+ G++ E G+H LL+ + Y++L +Q D
Sbjct: 589 VNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQE----DT 644
Query: 502 SRTKASTVESTSTEQQISVVEQ------------------------LEEPEES--KRELS 535
+T+ ST E + + + ++ E+ ++++
Sbjct: 645 KQTEDSTDEQKLSMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIK 704
Query: 536 ASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY 595
ST +K K+ + FFR+ LN+ E+ L++G++AA +G+ P+FG I ++ A++
Sbjct: 705 VST---PIKEKKVS-FFRVA-ALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFF 759
Query: 596 DP--QAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIA 653
P Q K + ++++ F L+G+ S+ Q FF + G K + +R + V+R E+
Sbjct: 760 KPPEQLKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVG 819
Query: 654 WFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAW 713
WF++ +N +G++ +R+ +D + V+ ++ D ++ VQ ++S+ +++ V W++A +
Sbjct: 820 WFDETENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVL 879
Query: 714 AVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKI 773
A++P + G I K GFS D+ + E + +++ +IRTVASFC EE +++ K
Sbjct: 880 AMLPLIGLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKK 939
Query: 774 SLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFS 833
E R+ ++ I G+ G S + ++A + + A L+D + TF R + +
Sbjct: 940 KCEGPMRTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALT 999
Query: 834 LTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGR----IKGRIEFQ 889
+ +I++ +L P A A F ++DR+++I+P S ESGR +KG IE +
Sbjct: 1000 MAAVAISQSSSLSPDSSKASNAAASIFAVIDRESKIDP----SDESGRVLDNVKGDIELR 1055
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
+I F YPSRP+V + + L I G +ALVG SG+GKS+V+ALL RFYDP+ G I +DG
Sbjct: 1056 HISFKYPSRPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDG 1115
Query: 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-ASEAEIVEVSKKANIHDFIS 1008
IK L+ LR Q GLV QEP+LF+ +IR NI YG A+E EIV ++ +N H FIS
Sbjct: 1116 VEIKTLQLKWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFIS 1175
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
L GYDT+VGE+G QLSGGQKQR+AIAR ++K P ++LLDEATSALDAESERV+ AL+
Sbjct: 1176 GLQQGYDTMVGERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALD 1235
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYS 1128
+ + +RTT + VAHRL+T+ N+DVI V+ G +VE G H TL+ GVY+
Sbjct: 1236 RV---------MVNRTT-VVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYA 1285
Query: 1129 RLYQLQ 1134
L QL
Sbjct: 1286 SLVQLH 1291
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1139 | ||||||
| 224132530 | 1275 | multidrug/pheromone exporter, MDR family | 0.971 | 0.868 | 0.750 | 0.0 | |
| 255549212 | 1289 | multidrug resistance protein 1, 2, putat | 0.978 | 0.864 | 0.731 | 0.0 | |
| 359490850 | 1252 | PREDICTED: ABC transporter B family memb | 0.975 | 0.887 | 0.736 | 0.0 | |
| 357464327 | 1342 | ABC transporter ATP-binding protein/perm | 0.975 | 0.827 | 0.651 | 0.0 | |
| 449524561 | 1229 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.964 | 0.893 | 0.679 | 0.0 | |
| 449468408 | 1229 | PREDICTED: ABC transporter B family memb | 0.964 | 0.893 | 0.678 | 0.0 | |
| 449468410 | 1244 | PREDICTED: ABC transporter B family memb | 0.971 | 0.889 | 0.673 | 0.0 | |
| 302144018 | 1157 | unnamed protein product [Vitis vinifera] | 0.901 | 0.887 | 0.689 | 0.0 | |
| 193848602 | 1269 | MDR-like ABC transporter [Brachypodium d | 0.976 | 0.876 | 0.644 | 0.0 | |
| 357139839 | 1230 | PREDICTED: ABC transporter B family memb | 0.976 | 0.904 | 0.644 | 0.0 |
| >gi|224132530|ref|XP_002321339.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222868335|gb|EEF05466.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1731 bits (4484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 846/1127 (75%), Positives = 964/1127 (85%), Gaps = 20/1127 (1%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
+VGAFDTDLS GK+ITGV++HMS+I+DAIGEKLGHFLSSFATFFSG+LIA ICCWEV+LL
Sbjct: 148 DVGAFDTDLSGGKIITGVTNHMSIIQDAIGEKLGHFLSSFATFFSGILIAAICCWEVALL 207
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LVVPMILVIGATYTK+MN VS KLLYLSEATSM+EQT+SQI+TVFAFVGE IK+F
Sbjct: 208 SLLVVPMILVIGATYTKKMNTVSTVKLLYLSEATSMVEQTVSQIRTVFAFVGESYAIKTF 267
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S+ M KQ+ S+ EALIKGVG+G FQ+VTFC WALIIWVGAVVVTAKR+ GG+VLAA+MS
Sbjct: 268 SESMAKQLSKSKVEALIKGVGIGTFQTVTFCSWALIIWVGAVVVTAKRAHGGDVLAAIMS 327
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI+LTYAAPDMQ+FNQAKAAG E+F VIQRKP I+ SKGK L+++DGNIDIR V
Sbjct: 328 ILFGAISLTYAAPDMQIFNQAKAAGNELFDVIQRKPLITNDSKGKTLDRVDGNIDIRGVH 387
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
FAYPSR D LILKGFSLSIP+GKMVALVGSSGCGKSTVISL+ARFYDPS G+ILID+ NI
Sbjct: 388 FAYPSRQDALILKGFSLSIPSGKMVALVGSSGCGKSTVISLIARFYDPSKGEILIDNHNI 447
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
KDLDLK LR+N+GAVSQEPSLF G++ DN+ VGNM ADD+++ NA+MMANAHSFISQLP+
Sbjct: 448 KDLDLKFLRRNVGAVSQEPSLFAGTIKDNLMVGNMGADDQEVENAAMMANAHSFISQLPN 507
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
QYSTE+GQRG QLSGGQKQRIAIARAI+KNPPILLLDEATSALDSESEKLVQ+ALE+AMQ
Sbjct: 508 QYSTEVGQRGFQLSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQDALEKAMQ 567
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMSTI+NADMIA+VE+GQV ETGTH SLL+TS Y +LF+MQN+ ++SR
Sbjct: 568 GRTVILIAHRMSTIINADMIAIVENGQVIETGTHRSLLETSKVYGKLFSMQNISTANNSR 627
Query: 504 -----------TKASTVESTSTEQQI--SVVEQLEEPEESKRELSASTGQEEVKG-KRTT 549
+ ES ST QQ+ + ++Q EE E + L QE+ KG K +
Sbjct: 628 LVGPSSFIINSVTERSEESASTNQQLLSADLDQHEERGEPNKHLCKPPLQEDQKGRKEAS 687
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA 609
FFRIWF L ++L++ VVG+VAAAFSGISKP FG+FIIT+GV YY A + V W+S+
Sbjct: 688 PFFRIWFGLEHKDLVKTVVGSVAAAFSGISKPFFGYFIITVGVTYYKEDANRRVVWFSIM 747
Query: 610 FSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRI 669
F+L+GL SLFTHTLQHYFFG VGEKAM NLR+ LY+GVL NE+AWFEKP+N GSLTSRI
Sbjct: 748 FALIGLLSLFTHTLQHYFFGAVGEKAMANLRQALYSGVLLNELAWFEKPENTVGSLTSRI 807
Query: 670 VSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729
++DTS VK IISDRMSVIVQC+SSILIATIVS+VV+WRM LVAWAVMPCHFIGGLIQAKS
Sbjct: 808 INDTSKVKIIISDRMSVIVQCLSSILIATIVSMVVNWRMGLVAWAVMPCHFIGGLIQAKS 867
Query: 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789
A+GFSGDSAAAH E + L SES +NIRT+ASFCHEE IL+KAKI LE KR SRKESIKY
Sbjct: 868 AKGFSGDSAAAHYELVELASESTANIRTIASFCHEEQILKKAKICLENPKRRSRKESIKY 927
Query: 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTV 849
G+IQG SLCLWNIAHAVALWYT L+DK QATF DGIR+YQIFSLTVPSITELWTLIPTV
Sbjct: 928 GLIQGVSLCLWNIAHAVALWYTTHLVDKHQATFLDGIRSYQIFSLTVPSITELWTLIPTV 987
Query: 850 ISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSL 909
ISAI VLAPAFE LDR+TEI+PD P+S + I GRIEFQNI+FNYP RPEVTVL+NFSL
Sbjct: 988 ISAIGVLAPAFETLDRETEIQPDIPKSPDLETIVGRIEFQNIQFNYPLRPEVTVLHNFSL 1047
Query: 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQ 969
QIE GLKVALVGPSG+GKSSVLALLLRFYDP EG +LID K I+EYNLR+LR QIG VQQ
Sbjct: 1048 QIEAGLKVALVGPSGSGKSSVLALLLRFYDPREGRVLIDKKDIREYNLRKLRRQIGWVQQ 1107
Query: 970 EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029
EPLLFS SIR+NI YGNE ASE EIV+VS++ANIH+F+S+ PDGYDTVVGEKGCQLSGGQ
Sbjct: 1108 EPLLFSSSIRDNIIYGNEGASETEIVKVSREANIHEFVSNFPDGYDTVVGEKGCQLSGGQ 1167
Query: 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA--LNPKSSSCGELASRTTQI 1087
KQRIAIARTLLKRPAI+LLDEATSALD E+ER IVSAL + LN S TTQI
Sbjct: 1168 KQRIAIARTLLKRPAILLLDEATSALDTETERSIVSALGSVKLNDNRGS----GYTTTQI 1223
Query: 1088 TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
TVAHR++TV NSD I VMDKGE+V+MGSHS L+A S G+YSRLYQLQ
Sbjct: 1224 TVAHRISTVKNSDTIAVMDKGEIVQMGSHSALIATSDGLYSRLYQLQ 1270
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549212|ref|XP_002515660.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545203|gb|EEF46712.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1722 bits (4459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1136 (73%), Positives = 976/1136 (85%), Gaps = 22/1136 (1%)
Query: 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEV 80
I E+GAFDTDL++GKVITGV++HMS+I+DAIGEKL HFLSSFATFFSG+LIA IC WEV
Sbjct: 159 INQEIGAFDTDLTSGKVITGVTNHMSIIQDAIGEKLAHFLSSFATFFSGILIAAICSWEV 218
Query: 81 SLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEI 140
SLL LV+PMILVIGATYTK+MN +SA K++YLSEAT+M+EQTISQIKTVF+FVGE I
Sbjct: 219 SLLTLLVLPMILVIGATYTKKMNTISAAKMVYLSEATAMVEQTISQIKTVFSFVGESHAI 278
Query: 141 KSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAA 200
KSFS+CM KQ+ +++GEALIKGVG GMFQ+VTF WALIIW+GA+VVT ++S GGEV+AA
Sbjct: 279 KSFSECMAKQLTLNKGEALIKGVGTGMFQTVTFVSWALIIWIGAIVVTVQKSNGGEVIAA 338
Query: 201 VMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260
VMSILFGAI+LTYAAPDMQ+FNQAKAAG E+F+VI RKP I + S G+ L K++GNI+I+
Sbjct: 339 VMSILFGAISLTYAAPDMQIFNQAKAAGTEVFKVINRKPLIRHISTGRTLIKVEGNIEIK 398
Query: 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320
DV FAYPSR D LIL+G SLSIPAGK +ALVGSSGCGKST+ISLVARFYDP GDILID+
Sbjct: 399 DVYFAYPSRQDNLILRGLSLSIPAGKTMALVGSSGCGKSTIISLVARFYDPLTGDILIDN 458
Query: 321 LNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQ 380
NIKDLDL+ LR+NIG+V QEPSLF GS+ DN+KVGNMDA D+Q+ +A+++ANAHSFISQ
Sbjct: 459 NNIKDLDLRFLRRNIGSVFQEPSLFAGSIKDNLKVGNMDASDQQMQDAAIVANAHSFISQ 518
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
LP+QY TE+G+RGVQLSGGQKQRIAIARAI+K+PPILLLDEATSALDSESEKLVQ AL+R
Sbjct: 519 LPNQYLTEVGERGVQLSGGQKQRIAIARAILKSPPILLLDEATSALDSESEKLVQYALDR 578
Query: 441 AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPID 500
AM GRTVILIAHR+ST+VNADMIA+VE+GQVTETGTH SLL T FYN LF++ N+ I
Sbjct: 579 AMVGRTVILIAHRLSTVVNADMIAIVENGQVTETGTHSSLLDTHKFYNNLFSLHNISTIS 638
Query: 501 DSRTKAST------VESTSTEQQISVVEQL--------EEPEESKRELSASTGQEEVKG- 545
+SR ++ +++T++E +++QL P + +S S QEE K
Sbjct: 639 NSRFIDTSLFIQHNIQNTASEDH-PIIKQLAPKYNENHNRPSDLSMHMSQSPKQEEQKDI 697
Query: 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGW 605
+++ IFFRIWF L ++ELLR +G+ AAAFSGISKP+FGFFIIT+GVAYY AK++VG
Sbjct: 698 RKSAIFFRIWFGLQKKELLRTAIGSFAAAFSGISKPVFGFFIITVGVAYYKKDAKRQVGL 757
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
YS+ F+L+GL SLFTHTLQHYFFGVVGEKAM NLR+ LY+GVL NEIAWFEKP+N GSL
Sbjct: 758 YSIIFALIGLLSLFTHTLQHYFFGVVGEKAMINLRQALYSGVLHNEIAWFEKPENSVGSL 817
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725
TSRI+ T+MVK IISDRMSVIVQCISSILIAT+VS+VV+WRM LVAWAVMPCHFIGGLI
Sbjct: 818 TSRIIHATAMVKTIISDRMSVIVQCISSILIATVVSMVVNWRMGLVAWAVMPCHFIGGLI 877
Query: 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785
QAKSA+GFS DSAAAH E ++L SESA+NIRT+ASFCHEE+IL+KAK LEK K+ SRK+
Sbjct: 878 QAKSAKGFSRDSAAAHYELVTLASESAANIRTIASFCHEEHILKKAKTCLEKPKKKSRKQ 937
Query: 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTL 845
SIK+G+IQG SLCLWNIAHAVALWYT L++++QATF DGIR+YQIFSLTVPSITELWTL
Sbjct: 938 SIKFGLIQGVSLCLWNIAHAVALWYTTRLVERRQATFEDGIRSYQIFSLTVPSITELWTL 997
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLN 905
IPTVISAITVL PAFE LDR+TEIEPDAP+SS RI GR+E QN+KF YP RPEVTVLN
Sbjct: 998 IPTVISAITVLTPAFETLDRETEIEPDAPKSSHLKRIMGRVELQNVKFYYPLRPEVTVLN 1057
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965
NFSL IE GL+VALVGPSGAGKSS+LALLLRFYDP EG +LIDGK I+EYNLR LR+QIG
Sbjct: 1058 NFSLHIEAGLRVALVGPSGAGKSSILALLLRFYDPGEGTVLIDGKDIREYNLRLLRTQIG 1117
Query: 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025
LVQQEPLLFS SIR+NI YG+E ASEA+IV+VS +ANIH+FISSLPDGY+TVVGEKGCQL
Sbjct: 1118 LVQQEPLLFSSSIRDNIAYGHEGASEADIVKVSMEANIHEFISSLPDGYNTVVGEKGCQL 1177
Query: 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA--LNPKSSSCGELASR 1083
SGGQKQRIAIARTLLKRPAI+LLDEAT ALDAESER IVSALE+ LN K SS R
Sbjct: 1178 SGGQKQRIAIARTLLKRPAILLLDEATGALDAESERSIVSALESINLNSKESSL----YR 1233
Query: 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
+TQITVAHRL+++ +SD+IVVMDKG++VEMGSH TL S+G+YSRLY LQ + N
Sbjct: 1234 STQITVAHRLSSIKDSDIIVVMDKGKLVEMGSHLTLTKMSEGMYSRLYHLQNLTEN 1289
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490850|ref|XP_002269539.2| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1705 bits (4415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 832/1129 (73%), Positives = 977/1129 (86%), Gaps = 18/1129 (1%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDTDL++GK+I+G+SSHMS+I+DAIGEKLGHFLS+ AT FSG+LIA ICCWEVSLL
Sbjct: 129 EIGAFDTDLTSGKIISGISSHMSIIQDAIGEKLGHFLSNIATCFSGILIAAICCWEVSLL 188
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LVVP++LV GATY+K+MNA+SA K+ +LSEATSMIEQT+SQIKTVFAFVGE + KSF
Sbjct: 189 TLLVVPLVLVTGATYSKKMNAISAAKMHFLSEATSMIEQTLSQIKTVFAFVGESTAAKSF 248
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S+CMDKQ IS+ EA+IKGVG G+FQ+VT CCWALIIWVGA+VVTAKRS+GG+++AAVMS
Sbjct: 249 SECMDKQFRISKREAIIKGVGTGLFQTVTTCCWALIIWVGAIVVTAKRSSGGDIIAAVMS 308
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI+LTYAAPD+Q+FN AKAAG E+FQVI+RKP ISY S+GK LEKI+GNID++DV
Sbjct: 309 ILFGAISLTYAAPDIQIFNSAKAAGNEVFQVIKRKPAISYDSEGKTLEKINGNIDMQDVY 368
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
F YPSR ++LIL GFS SIPAGK+VALVGSSGCGKSTVISLVARFYDPS G+ILID+ NI
Sbjct: 369 FTYPSRKERLILDGFSFSIPAGKVVALVGSSGCGKSTVISLVARFYDPSQGEILIDNYNI 428
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
KDLDLK LRKNIGAV QEPSLF+G++ DNIKVG+M+ADD+++ N ++MANAHSFI+QLPD
Sbjct: 429 KDLDLKFLRKNIGAVFQEPSLFSGTIKDNIKVGSMEADDQEVQNVALMANAHSFITQLPD 488
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
QYSTE+G+RGVQLSGGQKQRIAIARAI+KNPPILLLDEATSALDSESEKLVQ A+E+AMQ
Sbjct: 489 QYSTEVGERGVQLSGGQKQRIAIARAIIKNPPILLLDEATSALDSESEKLVQAAIEKAMQ 548
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMST++NADMIAV+E+GQV ETGTH LL TS+FYN LF MQNL P SR
Sbjct: 549 GRTVILIAHRMSTVINADMIAVIENGQVKETGTHSDLLDTSNFYNNLFNMQNLCPDQGSR 608
Query: 504 TKAS-----------TVESTSTEQQISV--VEQLEEPEESKRELSASTGQEEVKGKRTTI 550
S T E+ ST+Q+IS ++Q EEP + R+ + ++ V+GKR
Sbjct: 609 LVHSLPSSHNHVTDLTEENASTDQEISFQDLDQSEEPNKHPRD-ALKEEEQRVRGKRVQ- 666
Query: 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAF 610
FFRIWF L + EL++ +G+ AAA SGISKP FG+FIITIGVAYY AKQ VG YS+ F
Sbjct: 667 FFRIWFGLKKSELIKTAIGSFAAALSGISKPFFGYFIITIGVAYYKEDAKQRVGLYSILF 726
Query: 611 SLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIV 670
SL+GL SLFTHTLQHYFFGV+GEKAMTNLR+ LY+G+L NE+AWFEKP+N+ GSLTSRI+
Sbjct: 727 SLIGLLSLFTHTLQHYFFGVIGEKAMTNLRQALYSGILNNELAWFEKPENNVGSLTSRII 786
Query: 671 SDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSA 730
+DTS VK IISDRMSVIVQCISSILIATIV++ ++WRM LVAWAVMPCHFIGGLIQAK A
Sbjct: 787 NDTSTVKTIISDRMSVIVQCISSILIATIVTMKLNWRMGLVAWAVMPCHFIGGLIQAKFA 846
Query: 731 QGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790
+GFS SAAAH E ++L SESA+N++T+ASFCHE+ IL KAKI+LE R SR+ SIKYG
Sbjct: 847 KGFSSGSAAAHCELVALASESATNMKTIASFCHEDFILDKAKIALEPPMRKSRRASIKYG 906
Query: 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVI 850
+IQGFSLCLWNIAHAVALWYTAVL+++ QATF +GIR+YQIFSLTVPSITELWTLIPTVI
Sbjct: 907 IIQGFSLCLWNIAHAVALWYTAVLVERDQATFENGIRSYQIFSLTVPSITELWTLIPTVI 966
Query: 851 SAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQ 910
SAI++L P F+ LDRKTEIEPD PE+S + +IKGRIEFQN+ FNYP RPEVTVLNNF LQ
Sbjct: 967 SAISILTPTFKTLDRKTEIEPDTPENSHAEKIKGRIEFQNVSFNYPLRPEVTVLNNFCLQ 1026
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQE 970
IE G KVALVGPSGAGKSSVLAL+LRFYDP G ILID K I+ YNLRRLRS+IGLVQQE
Sbjct: 1027 IEAGSKVALVGPSGAGKSSVLALILRFYDPRAGRILIDRKDIRNYNLRRLRSRIGLVQQE 1086
Query: 971 PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030
PLLFS SIR+NICYGN+ ASE EI+EV+++A IH+FIS+L GYDTVVG+KGCQLSGGQK
Sbjct: 1087 PLLFSSSIRDNICYGNDGASETEIIEVAREARIHEFISNLSHGYDTVVGQKGCQLSGGQK 1146
Query: 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA 1090
QRIAIARTLLKRPAI+LLDEATSALD +SER +VSALE+ K ++ G+L SRTTQITVA
Sbjct: 1147 QRIAIARTLLKRPAILLLDEATSALDTQSERAVVSALES--TKLNNNGDL-SRTTQITVA 1203
Query: 1091 HRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
HRL+TVINSD I+VMDKGE+VEMG HSTL+A S G+YS+L QLQ+ N
Sbjct: 1204 HRLSTVINSDTIIVMDKGEIVEMGPHSTLIAVSDGLYSKLVQLQSLGEN 1252
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464327|ref|XP_003602445.1| ABC transporter ATP-binding protein/permease [Medicago truncatula] gi|355491493|gb|AES72696.1| ABC transporter ATP-binding protein/permease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1583 bits (4099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 780/1198 (65%), Positives = 943/1198 (78%), Gaps = 87/1198 (7%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDT+L++GKVITG+S HMSVI+DAIGEKLGHF SS ATFF+G++IA I CWEV+LL
Sbjct: 143 EIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGMVIATIACWEVALL 202
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+VVP+IL+IGATYTK+MN +S TKL Y SEATSMIEQTISQIKTV+AFVGE +KSF
Sbjct: 203 CLVVVPLILLIGATYTKKMNRISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAVKSF 262
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ MDKQ ++S+GEAL+KGVG GMFQ+V+FC W+LIIWVGAVVV A R+ GG+++ AVMS
Sbjct: 263 TENMDKQYVVSKGEALVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAQGGDIITAVMS 322
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI++TYAAPDMQ+FNQAKAAG+E+FQVIQRKP I SKGK KIDG+I++R+V
Sbjct: 323 ILFGAISITYAAPDMQIFNQAKAAGYEVFQVIQRKPLIHNESKGKMPNKIDGSIELRNVY 382
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG--------- 314
F+YPSR ++ IL+G SLSIPAGK VALVGSSGCGKST ISL+ RFYDP+ G
Sbjct: 383 FSYPSRSEKPILQGLSLSIPAGKTVALVGSSGCGKSTAISLITRFYDPTRGIDSVILNAI 442
Query: 315 -------------DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA- 360
+I IDS NIKDLDLK LR NIGAV QEPSLFTG++ DN+K+G MDA
Sbjct: 443 NDAKPDIVQYIPGEIFIDSHNIKDLDLKFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDAS 502
Query: 361 DDE---------------QIYNASMMANAHSFI------------------------SQL 381
D+E Q+ N + +++S + S +
Sbjct: 503 DEEIQKAAVMSNAHSFISQLPNQYLTESSNSIVKGKTLGGEISLLFLNKSVLSLESDSWV 562
Query: 382 PDQYS-------------------TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
P+ S ++GQRGVQ+SGGQKQRIAIARAI+KNPPILLLDEA
Sbjct: 563 PNIASMIWIIIPFMRLIVPYVCLTCQVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEA 622
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
TSALDSESEKLVQEAL+ AMQGRTVILIAHR+ST+VNADMIAVVE+GQ+ ETGTH SLL
Sbjct: 623 TSALDSESEKLVQEALDTAMQGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLD 682
Query: 483 TSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPE-ESKREL---SAST 538
TS FY+ LF+MQNL P + RT S +S E I + E + E +R+L S
Sbjct: 683 TSKFYSTLFSMQNLEPAPELRTTTSKDKSARREDTIDETRPVPETQREVQRDLIEHSVLK 742
Query: 539 GQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQ 598
Q + + IFFRIW+ L ++EL+++ +G+ AAAFSGISKP FGF+IITIGVAY+
Sbjct: 743 EQNKTGTREENIFFRIWYDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFQDD 802
Query: 599 AKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKP 658
AK++VG +S FS +GL SLF+HT QHYFFGVVGEKAM N RR LY+GVL NE+ WF+KP
Sbjct: 803 AKRKVGLFSAIFSAIGLLSLFSHTFQHYFFGVVGEKAMANFRRALYSGVLCNEVGWFDKP 862
Query: 659 QNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718
+N GSLTSRI+SDTSMVK II+DRMSVIVQC+SSILIAT VS+ V+WRMALVAWAVMPC
Sbjct: 863 ENTVGSLTSRIISDTSMVKIIIADRMSVIVQCVSSILIATGVSMYVNWRMALVAWAVMPC 922
Query: 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKT 778
HFIGGLIQAKSA+GFSGD +A H++ ++L SES +NIRT+ASFCHEE +L+KAK L+
Sbjct: 923 HFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLEKAKTYLDIP 982
Query: 779 KRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPS 838
K+ RKESIKYG+IQGFSLCLWNIAHAVALWYT +L+D++QA+F +GIRAYQIFSLTVPS
Sbjct: 983 KKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRAYQIFSLTVPS 1042
Query: 839 ITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSR 898
ITEL+TLIPTVI+AI +L PAF+ LDRKTEIEPD P+ S+ RI+G +EF+N+ F YP R
Sbjct: 1043 ITELYTLIPTVITAINMLTPAFKTLDRKTEIEPDIPDDSQPDRIQGNVEFENVNFKYPLR 1102
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
P VTVL+NFSLQIE G KVA VGPSGAGKSSVLALLLRFYDP G +LIDGK ++EYNLR
Sbjct: 1103 PTVTVLDNFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDLREYNLR 1162
Query: 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVV 1018
LR+QIGLVQQEPLLF+CSIR NICYGN A E+EIVEV+++ANIH+F+S+LP+GY+TVV
Sbjct: 1163 WLRTQIGLVQQEPLLFNCSIRENICYGNNGAFESEIVEVAREANIHEFVSNLPNGYNTVV 1222
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCG 1078
GEKGCQLSGGQKQRIAIARTLLK+PAI+LLDEATSALDAESER IV+A++A+N K +
Sbjct: 1223 GEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEETG- 1281
Query: 1079 ELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
L SR TQITVAHRL+TV NSD I+VM+KG++VE GSHSTL+ G+YSRL++LQ+F
Sbjct: 1282 -LRSRITQITVAHRLSTVRNSDTIIVMEKGKIVETGSHSTLIEVDAGLYSRLFRLQSF 1338
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449524561|ref|XP_004169290.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter B family member 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1580 bits (4092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1114 (67%), Positives = 928/1114 (83%), Gaps = 16/1114 (1%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDTDL+T K+ITG+S+HM++I+DAIGEKLGHFL+S ATF SGV+IA+I CWEVSLL
Sbjct: 130 EIGAFDTDLTTAKIITGISAHMTIIQDAIGEKLGHFLASVATFISGVVIAIISCWEVSLL 189
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LV P+++ IGA YTKRM +S+ K+ Y SEATS+I+Q+ISQI+ V+AFVGERS IK+F
Sbjct: 190 TLLVAPLVMAIGAAYTKRMTLISSIKIGYQSEATSLIQQSISQIRAVYAFVGERSSIKAF 249
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ +K I++S+ EAL+KGVG+GMFQ+VTFCCW+LI+W+GAVVVTA R+ GG+++AAVMS
Sbjct: 250 AEQCEKMIVMSKQEALVKGVGIGMFQTVTFCCWSLIVWIGAVVVTAGRANGGDIIAAVMS 309
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI+LTYAAPDMQ+FNQAKAAG E+FQVIQRKP SK K LE I+G+I+I+ V
Sbjct: 310 ILFGAISLTYAAPDMQIFNQAKAAGKEVFQVIQRKPSSIDGSKEKTLEDIEGHINIQKVH 369
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
FAYPSRP +LIL+ F+LSIPAG+ ALVGSSGCGKSTVISL+ RFYDP GDI ID NI
Sbjct: 370 FAYPSRPHKLILQDFTLSIPAGQSNALVGSSGCGKSTVISLITRFYDPLQGDIFIDHQNI 429
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
KDL+LK +R+NIG VSQEP+LF G++ DNIK+G DA+D+QI NA++MANAHSFIS LP+
Sbjct: 430 KDLNLKFVRENIGIVSQEPALFAGTIKDNIKMGKRDANDQQIENAAVMANAHSFISNLPN 489
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
QY TE+G+ G QLSGGQKQRIAIARAI+KNP ILLLDEATSALDSESE+LVQ+ALE+A+
Sbjct: 490 QYLTEVGEGGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDSESERLVQDALEKAIV 549
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMSTI+ AD+IA++E+G+V ETGTH SLL+ S FY LF+M N+RPI DS
Sbjct: 550 GRTVILIAHRMSTIIGADVIAIIENGRVLETGTHQSLLEKSIFYGNLFSMHNIRPIKDS- 608
Query: 504 TKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNEREL 563
+ S+ + E+LE P+ SK + S EE +G + IFFRIWF L+ E+
Sbjct: 609 ----SAHQQSSSCDLDKDEKLE-PKNSKID---SLRAEEKEGSKE-IFFRIWFGLSNIEI 659
Query: 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTL 623
++ + G+ AAA SGISKP+FGFFIITIGVAYY AK VG YSL FS+VGL S F HT+
Sbjct: 660 MKTIFGSFAAAVSGISKPIFGFFIITIGVAYYHTNAKHRVGLYSLIFSMVGLLSFFMHTI 719
Query: 624 QHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683
QHYFFG+VGEK+M NLR LY+ VLRNE+AWF++ +N+ GSLTS+I++ TSM+K II+DR
Sbjct: 720 QHYFFGIVGEKSMKNLREALYSAVLRNEVAWFDRSENNVGSLTSQIMNTTSMIKTIIADR 779
Query: 684 MSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTE 743
MSVIVQCISSILIAT VSL+V+WRMALVAWAVMP HFIGGLIQAKSA+GFS DSA AH E
Sbjct: 780 MSVIVQCISSILIATTVSLIVNWRMALVAWAVMPFHFIGGLIQAKSAKGFSRDSAVAHHE 839
Query: 744 FISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803
+SL S+SA+NIRT+ASFC EE I+++A++SLE+ KR S++ESIKYG+I G +LCLWNIA
Sbjct: 840 LVSLVSDSATNIRTIASFCQEEEIMKRARMSLEEPKRKSKRESIKYGIINGIALCLWNIA 899
Query: 804 HAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEIL 863
HA+ALWYT +L+ K+QA+F DGIR+YQIFSLTVPSITELWTLIPTVISAI VL PAF L
Sbjct: 900 HAIALWYTTILVHKRQASFEDGIRSYQIFSLTVPSITELWTLIPTVISAIGVLTPAFHTL 959
Query: 864 DRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
DRKT IE + P + + +GRIEFQ +KFNYP+RPEV VL NFSL+I+ G +VAL+GPS
Sbjct: 960 DRKTLIESEIPRGQKIEKFEGRIEFQRVKFNYPTRPEVIVLTNFSLEIKAGSRVALIGPS 1019
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
GAGKSSVLALLLRFYDP EG ILIDGK IKEYNLR LR+ IG V+QEP+LFS SIR NIC
Sbjct: 1020 GAGKSSVLALLLRFYDPEEGNILIDGKDIKEYNLRILRTHIGFVRQEPVLFSSSIRYNIC 1079
Query: 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043
YG E SE E+++VS+ A +H+F+S+LPDGYDT+VGE+GCQLSGGQKQRIAIARTLLK+P
Sbjct: 1080 YGIEHVSETELLKVSRDAKVHEFVSNLPDGYDTLVGERGCQLSGGQKQRIAIARTLLKKP 1139
Query: 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIV 1103
I+LLDE TSALD ESER +VSALE++N G RTTQITVAHRL+TV NSDVIV
Sbjct: 1140 TILLLDEPTSALDVESERTLVSALESIN------GNNGFRTTQITVAHRLSTVTNSDVIV 1193
Query: 1104 VMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
VMD+GE+VE+GSHSTL+ GVYS+L+++Q+ +
Sbjct: 1194 VMDRGEIVEIGSHSTLLTAPDGVYSKLFRIQSLA 1227
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468408|ref|XP_004151913.1| PREDICTED: ABC transporter B family member 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1579 bits (4088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1114 (67%), Positives = 927/1114 (83%), Gaps = 16/1114 (1%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDTDL+T K+ITG+S+HM++I+DAIGEKLGHFL+S ATF SGV+IA+I CWEVSLL
Sbjct: 130 EIGAFDTDLTTAKIITGISAHMTIIQDAIGEKLGHFLASVATFISGVVIAIISCWEVSLL 189
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LV P+++ IGA YTKRM +S+ K+ Y SEATS+I+Q+ISQI+ V+AFVGERS IK+F
Sbjct: 190 TLLVAPLVMAIGAAYTKRMTLISSIKIGYQSEATSLIQQSISQIRAVYAFVGERSSIKAF 249
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ +K I++S+ EAL+KGVG+GMFQ+ TFCCW+LI+W+GAVVVTA R+ GG+++AAVMS
Sbjct: 250 AEQCEKMIVMSKQEALVKGVGIGMFQTATFCCWSLIVWIGAVVVTAGRANGGDIIAAVMS 309
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI+LTYAAPDMQ+FNQAKAAG E+FQVIQRKP SK K LE I+G+I+I+ V
Sbjct: 310 ILFGAISLTYAAPDMQIFNQAKAAGKEVFQVIQRKPSSIDGSKEKTLEDIEGHINIQKVH 369
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
FAYPSRP +LIL+ F+LSIPAG+ ALVGSSGCGKSTVISL+ RFYDP GDI ID NI
Sbjct: 370 FAYPSRPHKLILQDFTLSIPAGQSNALVGSSGCGKSTVISLITRFYDPLQGDIFIDHQNI 429
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
KDL+LK +R+NIG VSQEP+LF G++ DNIK+G DA+D+QI NA++MANAHSFIS LP+
Sbjct: 430 KDLNLKFVRENIGIVSQEPALFAGTIKDNIKMGKRDANDQQIENAAVMANAHSFISNLPN 489
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
QY TE+G+ G QLSGGQKQRIAIARAI+KNP ILLLDEATSALDSESE+LVQ+ALE+A+
Sbjct: 490 QYLTEVGEGGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDSESERLVQDALEKAIV 549
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMSTI+ AD+IA++E+G+V ETGTH SLL+ S FY LF+M N+RPI DS
Sbjct: 550 GRTVILIAHRMSTIIGADVIAIIENGRVLETGTHQSLLEKSIFYGNLFSMHNIRPIKDS- 608
Query: 504 TKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNEREL 563
+ S+ + E+LE P+ SK + S EE +G + IFFRIWF L+ E+
Sbjct: 609 ----SAHQQSSSCDLDKDEKLE-PKNSKID---SLRAEEKEGSKE-IFFRIWFGLSNIEI 659
Query: 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTL 623
++ + G+ AAA SGISKP+FGFFIITIGVAYY AK VG YSL FS+VGL S F HT+
Sbjct: 660 MKTIFGSFAAAVSGISKPIFGFFIITIGVAYYHTNAKHRVGLYSLIFSMVGLLSFFMHTI 719
Query: 624 QHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683
QHYFFG+VGEK+M NLR LY+ VLRNE+AWF++ +N+ GSLTS+I++ TSM+K II+DR
Sbjct: 720 QHYFFGIVGEKSMKNLREALYSAVLRNEVAWFDRSENNVGSLTSQIMNTTSMIKTIIADR 779
Query: 684 MSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTE 743
MSVIVQCISSILIAT VSL+V+WRMALVAWAVMP HFIGGLIQAKSA+GFS DSA AH E
Sbjct: 780 MSVIVQCISSILIATTVSLIVNWRMALVAWAVMPFHFIGGLIQAKSAKGFSRDSAVAHHE 839
Query: 744 FISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803
+SL S+SA+NIRT+ASFC EE I+++A++SLE+ KR S++ESIKYG+I G +LCLWNIA
Sbjct: 840 LVSLVSDSATNIRTIASFCQEEEIMKRARMSLEEPKRKSKRESIKYGIINGIALCLWNIA 899
Query: 804 HAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEIL 863
HA+ALWYT +L+ K+QA+F DGIR+YQIFSLTVPSITELWTLIPTVISAI VL PAF L
Sbjct: 900 HAIALWYTTILVHKRQASFEDGIRSYQIFSLTVPSITELWTLIPTVISAIGVLTPAFHTL 959
Query: 864 DRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
DRKT IE + P + + +GRIEFQ +KFNYP+RPEV VL NFSL+I+ G +VAL+GPS
Sbjct: 960 DRKTLIESEIPRGQKIEKFEGRIEFQRVKFNYPTRPEVIVLTNFSLEIKAGSRVALIGPS 1019
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
GAGKSSVLALLLRFYDP EG ILIDGK IKEYNLR LR+ IG V+QEP+LFS SIR NIC
Sbjct: 1020 GAGKSSVLALLLRFYDPEEGNILIDGKDIKEYNLRILRTHIGFVRQEPVLFSSSIRYNIC 1079
Query: 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043
YG E SE E+++VS+ A +H+F+S+LPDGYDT+VGE+GCQLSGGQKQRIAIARTLLK+P
Sbjct: 1080 YGIEHVSETELLKVSRDAKVHEFVSNLPDGYDTLVGERGCQLSGGQKQRIAIARTLLKKP 1139
Query: 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIV 1103
I+LLDE TSALD ESER +VSALE++N G RTTQITVAHRL+TV NSDVIV
Sbjct: 1140 TILLLDEPTSALDVESERTLVSALESIN------GNNGFRTTQITVAHRLSTVTNSDVIV 1193
Query: 1104 VMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
VMD+GE+VE+GSHSTL+ GVYS+L+++Q+ +
Sbjct: 1194 VMDRGEIVEIGSHSTLLTAPDGVYSKLFRIQSLA 1227
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468410|ref|XP_004151914.1| PREDICTED: ABC transporter B family member 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1561 bits (4042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1125 (67%), Positives = 927/1125 (82%), Gaps = 19/1125 (1%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDTDL+T K+ITG+S H+S+I+DAIGEKLGHF+SS TF GV+IA+I CWEVSLL
Sbjct: 124 EIGAFDTDLTTPKIITGISGHLSIIQDAIGEKLGHFISSVTTFICGVVIAIISCWEVSLL 183
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LV P++L IGA+Y KRM +S+ K+ S+ATS++EQ+ISQI+TV+AFVGER +K+F
Sbjct: 184 TLLVAPLVLAIGASYNKRMTVISSLKMDCQSQATSLVEQSISQIRTVYAFVGERGSMKAF 243
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
+ +KQ ++ + EAL+KGVG+GMFQ+ TFCCW+LI+W+GAVVVTA +++GG+V+AAV+S
Sbjct: 244 EEQCEKQAVMCKQEALVKGVGIGMFQTATFCCWSLIVWIGAVVVTAGKASGGDVIAAVVS 303
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI--SYSSKGKELEKIDGNIDIRD 261
+LFG I LTYAAPDMQVFNQAK G E+FQVIQR P S K L+ I+G+IDIR+
Sbjct: 304 VLFGTITLTYAAPDMQVFNQAKVVGKEVFQVIQRIPATNDSLEEKKSTLKHIEGHIDIRE 363
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V FAYPSRP +L+ + FSLSIPAG+ VALVGSSGCGKSTVISL+ RFYDP GDI ID
Sbjct: 364 VHFAYPSRPQKLVFQDFSLSIPAGQTVALVGSSGCGKSTVISLITRFYDPLQGDIFIDHQ 423
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
N KDL+LK LR NIG VSQEP+LF G++ DNIK+GN+DADD+QI NA+ MANAHSFIS+L
Sbjct: 424 NTKDLNLKFLRTNIGIVSQEPALFAGTIKDNIKMGNIDADDKQIENAAFMANAHSFISEL 483
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+QYSTE+GQ G QLSGGQKQR+AIARAI+KNP ILLLDEATSALDSE+E+LVQ+ALE+A
Sbjct: 484 PNQYSTEVGQGGTQLSGGQKQRVAIARAILKNPKILLLDEATSALDSEAERLVQDALEKA 543
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDD 501
+ GRT ILIAHR+STIV ADMIA++EDG+V+ETGTH SLL+TS FY LF + +++P+ D
Sbjct: 544 IIGRTTILIAHRISTIVGADMIAIIEDGRVSETGTHQSLLETSTFYRNLFNLHSIKPLQD 603
Query: 502 SR----------TKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIF 551
SR S ST E Q S ++Q E+PE ++ S QEE K K +F
Sbjct: 604 SRFVLHTRKNNSNSLSEPGSTHQEAQSSDLDQDEKPELENSKID-SMSQEEEKVKVKEMF 662
Query: 552 FRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFS 611
FRIWF L++ E+++ G++AAA SGISKP+FGFFIITIGVAYY AKQ+VG YSL FS
Sbjct: 663 FRIWFGLSKIEIMKTSFGSLAAALSGISKPIFGFFIITIGVAYYKKNAKQKVGLYSLIFS 722
Query: 612 LVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVS 671
L+GL SLFTHTLQHYFFGVVGEKAM NLR LY+ VLRNE+AWF+KP+N+ G LTS+I++
Sbjct: 723 LLGLLSLFTHTLQHYFFGVVGEKAMRNLREALYSVVLRNEVAWFDKPENNVGLLTSKIMN 782
Query: 672 DTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQ 731
TS++K +I+DRMSVIVQCISSILIATIVS +++WRMALVAWAVMP HFIGGLIQAKSA+
Sbjct: 783 TTSVIKTVIADRMSVIVQCISSILIATIVSFIINWRMALVAWAVMPFHFIGGLIQAKSAK 842
Query: 732 GFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGV 791
GFS DSA H E +SL SESA+NIRT+ASFCHEE I+++A+ISLE+ R ++ESIKYG+
Sbjct: 843 GFSRDSADVHHELVSLASESATNIRTIASFCHEEQIMKRARISLEEPMRKGKRESIKYGI 902
Query: 792 IQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVIS 851
I G SLCLWNI++A+ALWYT +L+ K+QA+F DGIR+YQIFSLTVPSITELWTLIP VI
Sbjct: 903 IYGVSLCLWNISNAIALWYTTILVSKRQASFEDGIRSYQIFSLTVPSITELWTLIPAVIK 962
Query: 852 AITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQI 911
AI +L PAF LDR+T IEP+ P+ + +I+GRI+FQ + F YPSRPEV VL NFSLQI
Sbjct: 963 AIDILTPAFHTLDRRTLIEPEIPKGETTDKIEGRIDFQTVNFKYPSRPEVIVLKNFSLQI 1022
Query: 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP 971
+ G VAL+GPSGAGKSSVLALLLRFYDP +G ILIDGK IKEYNLR LR QIGLVQQEP
Sbjct: 1023 KAGSDVALIGPSGAGKSSVLALLLRFYDPEKGNILIDGKDIKEYNLRTLRRQIGLVQQEP 1082
Query: 972 LLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031
+LFS SIR NICYG++ SEAE+++VSK+ANIH F+SSLPDGYDT+VGEKGCQLSGGQKQ
Sbjct: 1083 VLFSSSIRYNICYGSDQVSEAEVLKVSKEANIHQFVSSLPDGYDTIVGEKGCQLSGGQKQ 1142
Query: 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091
RIAIARTLLK+PAI+LLDE TSALD ESER++V ALE++N G SRTTQITVAH
Sbjct: 1143 RIAIARTLLKKPAILLLDEPTSALDIESERILVRALESIN------GNNGSRTTQITVAH 1196
Query: 1092 RLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
RL+TV NSDVIVVMD+GEVVE+GSH+TL+ GVYS+L+++Q+
Sbjct: 1197 RLSTVSNSDVIVVMDRGEVVEIGSHATLLTTPDGVYSKLFRIQSL 1241
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302144018|emb|CBI23123.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1544 bits (3998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1118 (68%), Positives = 905/1118 (80%), Gaps = 91/1118 (8%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+GAFDTDL++GK+I+G+SSHMS+I+DAIGEKLGHFLS+ AT FSG+LIA ICCWEVSLL
Sbjct: 129 EIGAFDTDLTSGKIISGISSHMSIIQDAIGEKLGHFLSNIATCFSGILIAAICCWEVSLL 188
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
LVVP++LV GATY+K+MNA+SA K+ +LSEATSMIEQT+SQIKTVFAFVGE + KSF
Sbjct: 189 TLLVVPLVLVTGATYSKKMNAISAAKMHFLSEATSMIEQTLSQIKTVFAFVGESTAAKSF 248
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S+CMDKQ IS+ EA+IKGVG G+FQ+VT CCWALIIWVGA+VVTAKRS+GG+++AAVMS
Sbjct: 249 SECMDKQFRISKREAIIKGVGTGLFQTVTTCCWALIIWVGAIVVTAKRSSGGDIIAAVMS 308
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI+LTYAAPD+Q+FN AKAAG E+FQVI+RKP ISY S+GK LEKI+GNID++DV
Sbjct: 309 ILFGAISLTYAAPDIQIFNSAKAAGNEVFQVIKRKPAISYDSEGKTLEKINGNIDMQDVY 368
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
F YPSR ++LIL GFS SIPAGK+VALVGSSGCGKSTVISLVARFYDPS G+ILID+ NI
Sbjct: 369 FTYPSRKERLILDGFSFSIPAGKVVALVGSSGCGKSTVISLVARFYDPSQGEILIDNYNI 428
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
KDLDLK LRKNIGAV QEPSLF+G++ DNIKVG+M+ADD+++ N ++MANAHSFI+QLPD
Sbjct: 429 KDLDLKFLRKNIGAVFQEPSLFSGTIKDNIKVGSMEADDQEVQNVALMANAHSFITQLPD 488
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
QYSTE+G+RGVQLSGGQKQRIAIARAI+KNPPILLLDEATSALDSESEKLVQ A+E+AMQ
Sbjct: 489 QYSTEVGERGVQLSGGQKQRIAIARAIIKNPPILLLDEATSALDSESEKLVQAAIEKAMQ 548
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMST++NADMIAV+E+GQV ETGTH LL TS+FYN LF MQNL P SR
Sbjct: 549 GRTVILIAHRMSTVINADMIAVIENGQVKETGTHSDLLDTSNFYNNLFNMQNLCPDQGSR 608
Query: 504 TKASTVESTSTEQQISV--VEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNER 561
T E+ ST+Q+IS ++Q EEP + R+ + +EE +R
Sbjct: 609 VTDLTEENASTDQEISFQDLDQSEEPNKHPRD---ALKEEE-----------------QR 648
Query: 562 ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTH 621
E + VG + FS I L+ LF TH
Sbjct: 649 EDAKQRVGLYSILFSLI--------------------------------GLLSLF---TH 673
Query: 622 TLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681
TLQHYFFGV+GEKAMTNLR+ LY+G+L NE+AWFEKP+N+ GSLTSRI++DTS VK IIS
Sbjct: 674 TLQHYFFGVIGEKAMTNLRQALYSGILNNELAWFEKPENNVGSLTSRIINDTSTVKTIIS 733
Query: 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAH 741
DRMSVIVQCISSILIATIV++ ++WRM LVAWAVMPCHFIGGLIQAK A+GFS SAAAH
Sbjct: 734 DRMSVIVQCISSILIATIVTMKLNWRMGLVAWAVMPCHFIGGLIQAKFAKGFSSGSAAAH 793
Query: 742 TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801
E ++L SESA+N++T+ASFCHE+ IL KAKI+LE R SR+ SIKYG+IQGFSLCLWN
Sbjct: 794 CELVALASESATNMKTIASFCHEDFILDKAKIALEPPMRKSRRASIKYGIIQGFSLCLWN 853
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFE 861
IAHAVALWYTAVL+++ QATF +GIR+YQIFSLTVPSITELWTLIPTVISAI++L P F+
Sbjct: 854 IAHAVALWYTAVLVERDQATFENGIRSYQIFSLTVPSITELWTLIPTVISAISILTPTFK 913
Query: 862 ILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVG 921
LDRKTEIEPD PE+S + +IKGRIEFQN+ FNYP RPEVTVLNNF LQIE G KVALVG
Sbjct: 914 TLDRKTEIEPDTPENSHAEKIKGRIEFQNVSFNYPLRPEVTVLNNFCLQIEAGSKVALVG 973
Query: 922 PSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981
PSGAGKSSVLAL+LRFYDP G ILID K I+ YNLRRLRS+IGLVQQEPLLFS SIR+N
Sbjct: 974 PSGAGKSSVLALILRFYDPRAGRILIDRKDIRNYNLRRLRSRIGLVQQEPLLFSSSIRDN 1033
Query: 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041
ICYGN+ ASE EI+EV+++A IH+FIS+L GYDTVVG+KGCQLSGGQKQRIAIARTLLK
Sbjct: 1034 ICYGNDGASETEIIEVAREARIHEFISNLSHGYDTVVGQKGCQLSGGQKQRIAIARTLLK 1093
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101
RPAI+LLDEATSALD + L+TVINSD
Sbjct: 1094 RPAILLLDEATSALDTQ----------------------------------LSTVINSDT 1119
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
I+VMDKGE+VEMG HSTL+A S G+YS+L QLQ+ N
Sbjct: 1120 IIVMDKGEIVEMGPHSTLIAVSDGLYSKLVQLQSLGEN 1157
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|193848602|gb|ACF22786.1| MDR-like ABC transporter [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1510 bits (3910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1118 (64%), Positives = 913/1118 (81%), Gaps = 6/1118 (0%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
EVGAFDTDL+T +ITGV++HM++I+DAIGEKLGHF++SF+TFF+G++IA CWEV++L
Sbjct: 156 EVGAFDTDLTTANIITGVTNHMNIIQDAIGEKLGHFVASFSTFFAGIIIAFASCWEVAML 215
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
FLV+P+IL IGATYTK+MN +S ++ +SE TS++EQT+S IKTVF+FVGE IKSF
Sbjct: 216 SFLVIPLILAIGATYTKKMNVISLSRNAIVSEVTSVVEQTLSHIKTVFSFVGENWAIKSF 275
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
C D Q +S+ EA+IKG+GLG+FQ+VTFC WAL++W+GAV V+ + +TGG +AA+MS
Sbjct: 276 VRCTDNQYKLSKKEAMIKGIGLGLFQAVTFCSWALMVWIGAVAVSKRTATGGGTIAAIMS 335
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI++TYAAPD+Q FNQA+AAG E+F+VI+R P ISY G L+K+ G I++R V
Sbjct: 336 ILFGAISITYAAPDLQTFNQARAAGKEVFKVIKRNPSISYGKGGTVLDKVYGEIELRGVR 395
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
FAYPSR D+ IL+GFSLSIPAGK+VAL+GSSGCGKSTVISL+ RFYDP++GDILID +I
Sbjct: 396 FAYPSRQDKPILQGFSLSIPAGKVVALIGSSGCGKSTVISLLQRFYDPTSGDILIDGHSI 455
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
+ +DLKSLR+NI +VSQEPSLF+G++ DN+++G MDA D++I A+ AN H+FIS+LP+
Sbjct: 456 RKIDLKSLRRNIASVSQEPSLFSGTIKDNLRIGKMDATDDEITEAATTANVHTFISKLPN 515
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
Y TE+G+RGVQLSGGQKQR+AIARA++K+PPILLLDEATSALDSESEKLVQ+ALERAM
Sbjct: 516 GYLTEVGERGVQLSGGQKQRVAIARAMLKDPPILLLDEATSALDSESEKLVQDALERAMH 575
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMSTIVNAD I VVE+G+V + GTH LL+ S FY+ + +MQN+ R
Sbjct: 576 GRTVILIAHRMSTIVNADTIVVVENGRVAQNGTHQELLEKSTFYSNVCSMQNIEKEAGKR 635
Query: 504 --TKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNER 561
+ + V T++ + +++ ++K E S QE V+ K T FFRIW+ L +
Sbjct: 636 VASPSDNVIQEQTDEAYNKQHSMKQGLQNKLERSKQPKQE-VR-KETHPFFRIWYGLRKD 693
Query: 562 ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTH 621
++ ++++G+ AAA SGISKPLFG+FI+TIGVAYYDP AK++V YSL F G+ +L +
Sbjct: 694 DIAKILLGSSAAAISGISKPLFGYFIMTIGVAYYDPDAKRKVSKYSLIFFGAGMVTLASS 753
Query: 622 TLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681
LQHY +GV+GEKAM NLR L++ VLRNE+AWFEKP+N GSLTSRIVSDTS VK IIS
Sbjct: 754 ILQHYIYGVIGEKAMKNLREALFSSVLRNELAWFEKPKNGVGSLTSRIVSDTSTVKTIIS 813
Query: 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAH 741
DRM+VIVQCISSILIAT VS+ V+WRM LV+WAVMPCHFIGGLIQA+SA+GF GD+A AH
Sbjct: 814 DRMAVIVQCISSILIATTVSMYVNWRMGLVSWAVMPCHFIGGLIQARSAKGFYGDAAIAH 873
Query: 742 TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801
E +SL SE+ASNIRTVASF +E+ I++KA++SL++ R +R ES+KYGVIQG SLCLWN
Sbjct: 874 QELVSLASEAASNIRTVASFVYEDEIIKKAELSLQEPMRITRIESMKYGVIQGISLCLWN 933
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFE 861
IAHAVALWYT VL+ +KQATF + IR+YQIFSLTVPSITELWTLIP V+SAI +L PAF+
Sbjct: 934 IAHAVALWYTTVLVQRKQATFENSIRSYQIFSLTVPSITELWTLIPMVMSAIAILNPAFD 993
Query: 862 ILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVG 921
+LDR+TEI PD P+ + GR EFQ++ FNYPSRPEVT+L+ F+L IEPG +VALVG
Sbjct: 994 MLDRETEIVPDEPKKPSEQWLVGRTEFQDVSFNYPSRPEVTILDGFNLVIEPGQRVALVG 1053
Query: 922 PSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981
PSGAGKSSVLALLLRFYDP+ G +L+D I++YNLR LR QIGLVQQEP+LF+ SIR N
Sbjct: 1054 PSGAGKSSVLALLLRFYDPHGGTVLVDNTNIRDYNLRWLRKQIGLVQQEPILFNSSIREN 1113
Query: 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041
I YG+E +SE EI++ + ANIH+FIS LP GYDTVVG+KG QLSGGQKQRIAIARTLLK
Sbjct: 1114 ISYGSEESSETEIIQAAMDANIHEFISGLPKGYDTVVGDKGGQLSGGQKQRIAIARTLLK 1173
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101
RP+I+LLDEATSALD+ESERV++S+L A K + E +S+ T ITVAHRL+TVIN+D+
Sbjct: 1174 RPSILLLDEATSALDSESERVVMSSLGAKEWK--NIDERSSKITSITVAHRLSTVINADM 1231
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
IVVM+KG+V+E+G H TLV+ GVYSRL+ LQ+ N
Sbjct: 1232 IVVMEKGKVIELGDHQTLVSADDGVYSRLFHLQSNMNN 1269
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357139839|ref|XP_003571484.1| PREDICTED: ABC transporter B family member 14-like, partial [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1510 bits (3909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 721/1118 (64%), Positives = 913/1118 (81%), Gaps = 6/1118 (0%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
EVGAFDTDL+T +ITGV++HM++I+DAIGEKLGHF++SF+TFF+G++IA CWEV++L
Sbjct: 117 EVGAFDTDLTTANIITGVTNHMNIIQDAIGEKLGHFVASFSTFFAGIIIAFASCWEVAML 176
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
FLV+P+IL IGATYTK+MN +S ++ +SE TS++EQT+S IKTVF+FVGE IKSF
Sbjct: 177 SFLVIPLILAIGATYTKKMNVISLSRNAIVSEVTSVVEQTLSHIKTVFSFVGENWAIKSF 236
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
C D Q +S+ EA+IKG+GLG+FQ+VTFC WAL++W+GAV V+ + +TGG +AA+MS
Sbjct: 237 VRCTDNQYKLSKKEAMIKGIGLGLFQAVTFCSWALMVWIGAVAVSKRTATGGGTIAAIMS 296
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
ILFGAI++TYAAPD+Q FNQA+AAG E+F+VI+R P ISY G L+K+ G I++R V
Sbjct: 297 ILFGAISITYAAPDLQTFNQARAAGKEVFKVIKRNPSISYGKGGTVLDKVYGEIELRGVR 356
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
FAYPSR D+ IL+GFSLSIPAGK+VAL+GSSGCGKSTVISL+ RFYDP++GDILID +I
Sbjct: 357 FAYPSRQDKPILQGFSLSIPAGKVVALIGSSGCGKSTVISLLQRFYDPTSGDILIDGHSI 416
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
+ +DLKSLR+NI +VSQEPSLF+G++ DN+++G MDA D++I A+ AN H+FIS+LP+
Sbjct: 417 RKIDLKSLRRNIASVSQEPSLFSGTIKDNLRIGKMDATDDEITEAATTANVHTFISKLPN 476
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
Y TE+G+RGVQLSGGQKQR+AIARA++K+PPILLLDEATSALDSESEKLVQ+ALERAM
Sbjct: 477 GYLTEVGERGVQLSGGQKQRVAIARAMLKDPPILLLDEATSALDSESEKLVQDALERAMH 536
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSR 503
GRTVILIAHRMSTIVNAD I VVE+G+V + GTH LL+ S FY+ + +MQN+ R
Sbjct: 537 GRTVILIAHRMSTIVNADTIVVVENGRVAQNGTHQELLEKSTFYSNVCSMQNIEKEAGKR 596
Query: 504 --TKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNER 561
+ + V T++ + +++ ++K E S QE V+ K T FFRIW+ L +
Sbjct: 597 VASPSDNVIQEQTDEAYNKQHSMKQGLQNKLERSKQPKQE-VR-KETHPFFRIWYGLRKD 654
Query: 562 ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTH 621
++ ++++G+ AAA SGISKPLFG+FI+TIGVAYYDP AK++V YSL F G+ +L +
Sbjct: 655 DIAKILLGSSAAAISGISKPLFGYFIMTIGVAYYDPDAKRKVSKYSLIFFGAGMVTLASS 714
Query: 622 TLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681
LQHY +GV+GEKAM NLR L++ VLRNE+AWFEKP+N GSLTSRIVSDTS VK IIS
Sbjct: 715 ILQHYIYGVIGEKAMKNLREALFSSVLRNELAWFEKPKNGVGSLTSRIVSDTSTVKTIIS 774
Query: 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAH 741
DRM+VIVQCISSILIAT VS+ V+WRM LV+WAVMPCHFIGGLIQA+SA+GF GD+A AH
Sbjct: 775 DRMAVIVQCISSILIATTVSMYVNWRMGLVSWAVMPCHFIGGLIQARSAKGFYGDAAIAH 834
Query: 742 TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801
E +SL SE+ASNIRTVASF +E+ I++KA++SL++ R +R ES+KYGVIQG SLCLWN
Sbjct: 835 QELVSLASEAASNIRTVASFVYEDEIIKKAELSLQEPMRITRIESMKYGVIQGISLCLWN 894
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFE 861
IAHAVALWYT VL+ +KQATF + IR+YQIFSLTVPSITELWTLIP V+SAI +L PAF+
Sbjct: 895 IAHAVALWYTTVLVQRKQATFENSIRSYQIFSLTVPSITELWTLIPMVMSAIAILNPAFD 954
Query: 862 ILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVG 921
+LDR+TEI PD P+ + GR EFQ++ FNYPSRPEVT+L+ F+L IEPG +VALVG
Sbjct: 955 MLDRETEIVPDEPKKPSEQWLVGRTEFQDVSFNYPSRPEVTILDGFNLVIEPGQRVALVG 1014
Query: 922 PSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981
PSGAGKSSVLALLLRFYDP+ G +L+D I++YNLR LR QIGLVQQEP+LF+ SIR N
Sbjct: 1015 PSGAGKSSVLALLLRFYDPHGGTVLVDNTNIRDYNLRWLRKQIGLVQQEPILFNSSIREN 1074
Query: 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041
I YG+E +SE EI++ + ANIH+FIS LP GYDTVVG+KG QLSGGQKQRIAIARTLLK
Sbjct: 1075 ISYGSEESSETEIIQAAMDANIHEFISGLPKGYDTVVGDKGGQLSGGQKQRIAIARTLLK 1134
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101
RP+I+LLDEATSALD+ESERV++S+L A K + E +S+ T ITVAHRL+TVIN+D+
Sbjct: 1135 RPSILLLDEATSALDSESERVVMSSLGAKEWK--NIDERSSKITSITVAHRLSTVINADM 1192
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
IVVM+KG+V+E+G H TLV+ GVYSRL+ LQ+ N
Sbjct: 1193 IVVMEKGKVIELGDHQTLVSADDGVYSRLFHLQSNMNN 1230
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1139 | ||||||
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.435 | 0.385 | 0.462 | 3.3e-230 | |
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.961 | 0.860 | 0.407 | 2.4e-227 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.964 | 0.868 | 0.404 | 4e-225 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.963 | 0.879 | 0.401 | 1.4e-222 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.412 | 0.349 | 0.474 | 5.8e-222 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.957 | 0.876 | 0.396 | 2.3e-220 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.432 | 0.383 | 0.429 | 1.2e-219 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.557 | 0.496 | 0.365 | 1.1e-216 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.951 | 0.883 | 0.395 | 1e-215 | |
| TAIR|locus:2088897 | 1240 | ABCB15 "ATP-binding cassette B | 0.965 | 0.887 | 0.396 | 6.1e-213 |
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 3.3e-230, Sum P(2) = 3.3e-230
Identities = 231/500 (46%), Positives = 335/500 (67%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT++ T V+ +++ +++DAI EKLG+F+ ATF SG ++ W+++L+
Sbjct: 134 DIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALV 193
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
VVP+I VIG +T ++ +S LS+A +++EQT+ QI+ V AFVGE +++
Sbjct: 194 TLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQAY 253
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S + + L KG+GLG V FCC+AL++W G +V + GG +A + +
Sbjct: 254 SSALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFA 313
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRDV 262
++ G +AL +AP M F +AK A +IF++I KP I +S+ G EL+ + G +++++V
Sbjct: 314 VMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNV 373
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YPSRPD IL F LS+PAGK +ALVGSSG GKSTV+SL+ RFYDP++G +L+D +
Sbjct: 374 DFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQD 433
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
+K L L+ LR+ IG VSQEP+LF S+ +NI +G DAD +I A+ +ANAHSFI +LP
Sbjct: 434 LKTLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLP 493
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
D + T++G+RG+QLSGGQKQRIAIARA++KNP ILLLDEATSALDSESEKLVQEAL+R M
Sbjct: 494 DGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFM 553
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD--FYNRLFTMQNL-RPI 499
GRT ++IAHR+STI AD++AV++ G V+E GTH L + Y +L MQ
Sbjct: 554 IGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHET 613
Query: 500 DDSRTKASTVESTSTEQQIS 519
S + S+ +S +S
Sbjct: 614 AMSNARKSSARPSSARNSVS 633
|
|
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2194 (777.4 bits), Expect = 2.4e-227, P = 2.4e-227
Identities = 456/1118 (40%), Positives = 697/1118 (62%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT+ STG+VI+ ++S + V++DA+ EK+G+FL + F +G I W++SL+
Sbjct: 167 DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226
Query: 84 IFLVVPMILVIGATYT-KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+VP+I + G Y + ++ + Y+ +A + E+ I ++TV AF GE ++
Sbjct: 227 TLSIVPLIALAGGIYAFVAIGLIARVRKSYI-KAGEIAEEVIGNVRTVQAFTGEERAVRL 285
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
+ + ++ R L KG+GLG V F WAL++W +VVV + GG+ ++
Sbjct: 286 YREALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTML 345
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRD 261
+++ ++L AAPD+ F +AKAA + IF++I+R S+K G++L K+DG+I +D
Sbjct: 346 NVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKD 405
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
F+YPSRPD +I +L+IPAGK+VALVG SG GKSTVISL+ RFY+P +G +L+D
Sbjct: 406 ATFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGN 465
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
NI +LD+K LR IG V+QEP+LF ++ +NI G DA E+I A+ ++ A SFI+ L
Sbjct: 466 NISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNL 525
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ + T++G+RG+QLSGGQKQRIAI+RAIVKNP ILLLDEATSALD+ESEK VQEAL+R
Sbjct: 526 PEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRV 585
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLRPID 500
M GRT +++AHR+ST+ NAD+IAVV +G++ E G H +L+ D Y+ L +Q +
Sbjct: 586 MVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQ 645
Query: 501 DSRTKASTVESTSTEQQISVVEQLEEPEESKRE-LSASTGQEEVKGKRTTIFFRIWFCLN 559
+ + T+ + + + + S+RE ++ G + K + T+ R++ +
Sbjct: 646 RNPSLNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDGADPSKKVKVTVG-RLYSMIR 704
Query: 560 ERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD--PQAKQEVGWYSLAFSLVGLFS 617
+ + V GT+ A +G PLF + V+YY + ++E+ ++ F + +
Sbjct: 705 P-DWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVIT 763
Query: 618 LFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVK 677
L +T++H FG +GE+ +R ++ +L+NEI WF++ N + L SR+ SD +++K
Sbjct: 764 LIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLK 823
Query: 678 AIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDS 737
I+ DR ++++Q + ++ + I++ +++WR+ LV A P G + + QG+ GD
Sbjct: 824 TIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDL 883
Query: 738 AAAHTEFISLTSESASNIRTVASFCHEENILQK-AKISLEKTKRSSRKESIKYGVIQGFS 796
A+ + L ES SNIRTVA+FC EE IL+ ++ LE +K S R+ I G+ G S
Sbjct: 884 NKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIA-GLFYGVS 942
Query: 797 LCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVL 856
++ +ALWY + L+DK A F+ ++ + + +T ++ E L P ++ ++
Sbjct: 943 QFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMV 1002
Query: 857 APAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLK 916
A FEILDRKT+I + E E ++G IE + + F+YPSRP+V + +F L + G
Sbjct: 1003 ASVFEILDRKTQIVGETSE--ELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKS 1060
Query: 917 VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC 976
+ALVG SG+GKSSV++L+LRFYDP G ++I+GK IK+ +L+ LR IGLVQQEP LF+
Sbjct: 1061 MALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFAT 1120
Query: 977 SIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036
+I NI YGN AN H FI+SLP+GY T VGE+G Q+SGGQ+QRIAIA
Sbjct: 1121 TIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIA 1180
Query: 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096
R +LK PAI+LLDEATSALD ESERV+ AL+ L +A+RTT + VAHRL+T+
Sbjct: 1181 RAILKNPAILLLDEATSALDVESERVVQQALDRL---------MANRTT-VVVAHRLSTI 1230
Query: 1097 INSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
N+D I V+ G++VE GSH LV G Y +L LQ
Sbjct: 1231 KNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQ 1268
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2173 (770.0 bits), Expect = 4.0e-225, P = 4.0e-225
Identities = 455/1124 (40%), Positives = 696/1124 (61%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT+ STG+VI ++S + V++DAI EK+G+F+ + F +G I W++SL+
Sbjct: 142 DIAVFDTEASTGEVINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLV 201
Query: 84 IFLVVPMILVIGATYTK-RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+VP+I + G Y + ++ + Y+ +A + E+ I ++TV AFVGE +++
Sbjct: 202 TLAIVPLIAIAGGIYAYVTIGLMARVRKSYV-KAGEIAEEVIGNVRTVQAFVGEEKAVRT 260
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
+ + + + + L KG+GLG SV F WAL+IW +VVV S GGE ++
Sbjct: 261 YREALLRTYKYGKRGGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTML 320
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK-GKELEKIDGNIDIRD 261
+++ ++L AAP++ F +A+ A + IFQ+I+R SSK G+ L +DG+I RD
Sbjct: 321 NVVIAGLSLGQAAPNISTFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRD 380
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V FAYPSRPD +IL FSL PAGK+VALVG SG GKSTV+SL+ RFY+P G +L+D
Sbjct: 381 VRFAYPSRPDVVILDRFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGH 440
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
+IKDLD+K LR+ IG V+QEP+LF S+ +NI G DA ++I +A+ ++ A +FI+ L
Sbjct: 441 DIKDLDVKWLRQQIGLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHL 500
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
PD+Y T++G+RG+QLSGGQKQRIAI+RAI+KNP ILLLDEATSALD+ESEK VQEAL+R
Sbjct: 501 PDRYETQVGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRV 560
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS-DFYNRLFTMQ------ 494
M GRT ++IAHR+STI NAD IAVV+ G++ ETGTH L+ Y L +Q
Sbjct: 561 MVGRTTVVIAHRLSTIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQ 620
Query: 495 NLRPIDDSRTKASTVESTSTEQ--QISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFF 552
N + DS + + + S + + + S+ ++S +E K +
Sbjct: 621 NKQSFSDSASLSRPLSSKYSRELSRTSMGGSFRSEKDSVSRYGTVEAHDEGGHKSKPVSM 680
Query: 553 RIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD--PQAKQEVGWYSLAF 610
+ + + + V GTV+A +G PLF + V+YY K+EV ++ F
Sbjct: 681 KKLYSMIRPDWFFGVSGTVSAFVAGSQMPLFALGVTQALVSYYMGWETTKREVRKIAVLF 740
Query: 611 SLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIV 670
+ ++ H ++H FG++GE+ +R ++ +LRNEI WF+ + + L+SR+
Sbjct: 741 CCGAVLTVVFHAIEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRLE 800
Query: 671 SDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSA 730
+D ++V+ I+ DR ++++Q I I+ + I++ +++WR+ LV A P G + +
Sbjct: 801 TDATLVRTIVVDRSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMFM 860
Query: 731 QGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790
+G+ G+ ++ + L +E+ SNIRTVA+FC EE +++ L++ + S + G
Sbjct: 861 KGYGGNLGKSYLKANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGAG 920
Query: 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVI 850
+ G S ++A+ALWY + L+ K+ A+F+ ++++ + +T ++ E + P +I
Sbjct: 921 LFYGVSQFFLFSSYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDII 980
Query: 851 SAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQ 910
+++ FEILDRKT++ DA ++ R++G IE + ++F YP+RPEV V L
Sbjct: 981 KGNQMVSSVFEILDRKTDVLIDA--GNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDLL 1038
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQE 970
++ G +ALVG SG+GKS+VL+L+LRFYDP G +LIDGK I++ L+ LR IGLVQQE
Sbjct: 1039 MKAGKSMALVGMSGSGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRKHIGLVQQE 1098
Query: 971 PLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030
P LF+ +I +NI YG K AN H FIS+LP+GY T VGE+G QLSGGQ+
Sbjct: 1099 PALFATTIYDNILYGKDGATEAEVVDAAKLANAHSFISALPEGYRTRVGERGVQLSGGQR 1158
Query: 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA 1090
QRIAIAR ++K PAI+LLDEATSALD ESERV+ AL+ + + +RTT + VA
Sbjct: 1159 QRIAIARAIVKDPAILLLDEATSALDVESERVVQQALDRV---------MRNRTT-VMVA 1208
Query: 1091 HRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
HRL+T+ N+DVI V+ G+++E G+H L+ G Y +L LQ
Sbjct: 1209 HRLSTIKNADVISVLQDGKIIEQGAHHQLIENRNGAYHKLVSLQ 1252
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2149 (761.5 bits), Expect = 1.4e-222, P = 1.4e-222
Identities = 450/1121 (40%), Positives = 675/1121 (60%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT+ I +SS +++DAIG+K GH L F +G +I + W+++LL
Sbjct: 138 DITFFDTEARDSNFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLL 197
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
VVP+I + G Y M+ +S ++A + E+ +SQ++TV+AFVGE +KS+
Sbjct: 198 TLGVVPLIAIAGGGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSY 257
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S+ + K + +S+ L KG+G+G+ S+ FC WAL+ W +++V ++ G + +++
Sbjct: 258 SNSLKKALKLSKRSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILN 317
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS--SKGKELEKIDGNIDIRD 261
+++ AL A P + ++ + A IF++I S G L+ + G I+
Sbjct: 318 VIYSGFALGQAVPSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCG 377
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V FAYPSRP+ ++ + S +I +GK A VG SG GKST+IS+V RFY+P +G+IL+D
Sbjct: 378 VSFAYPSRPN-MVFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGN 436
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
+IK+L LK LR+ +G VSQEP+LF ++ NI +G A+ +QI A+ ANA SFI L
Sbjct: 437 DIKNLKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSL 496
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ Y+T++G+ G QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESEK+VQ+AL+
Sbjct: 497 PNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNV 556
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDD 501
M+ RT I+IAHR+STI N D I V+ DGQV ETG+H L+ Y L Q+ P ++
Sbjct: 557 MEKRTTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQEN 616
Query: 502 SRTKA-----STVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWF 556
R+ S S S+ + S E+ ++ S G++ + +++ + +
Sbjct: 617 LRSVMYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGEDLISS--SSMIWEL-I 673
Query: 557 CLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP---QAKQEVGWYSLAFSLV 613
LN E L ++G++ A +G LF + + +Y P K+EV ++ F
Sbjct: 674 KLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGA 733
Query: 614 GLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDT 673
G+ + + LQHYF+ ++GE+ + +R +L++ +L NEI WF+ +N+ GSLTS + +D
Sbjct: 734 GIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADA 793
Query: 674 SMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGF 733
++V++ I+DR+S IVQ +S + A ++ WR+A V A P L + +GF
Sbjct: 794 TLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGF 853
Query: 734 SGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQ 793
GD A++ SL E+ SNIRTVA+F E+ I ++ L K +S+ G
Sbjct: 854 GGDYTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGY 913
Query: 794 GFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAI 853
G S CL ++A+ LWY +VLI + + F D I+++ + +T S+ E L P ++
Sbjct: 914 GLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGT 973
Query: 854 TVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEP 913
L F +L R+TEI PD P S IKG IEF+N+ F YP+RPE+ + N +L++
Sbjct: 974 QALGSVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSA 1033
Query: 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLL 973
G +A+VGPSG+GKS+V+ L++RFYDP+ G + IDG IK NLR LR ++ LVQQEP L
Sbjct: 1034 GKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPAL 1093
Query: 974 FSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033
FS SI NI YGN K AN H+FIS + +GY T VG+KG QLSGGQKQR+
Sbjct: 1094 FSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRV 1153
Query: 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093
AIAR +LK P+++LLDEATSALD +E+ + AL+ L + RTT I VAHRL
Sbjct: 1154 AIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKL---------MKGRTT-ILVAHRL 1203
Query: 1094 ATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+T+ +D IVV+ KG+VVE GSH LV++S G Y +L LQ
Sbjct: 1204 STIRKADTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1127 (401.8 bits), Expect = 5.8e-222, Sum P(2) = 5.8e-222
Identities = 224/472 (47%), Positives = 324/472 (68%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
+V FDTD+ T VI +++ V++DAI EKLG+ + ATF SG ++ W+++L+
Sbjct: 200 DVSFFDTDVRTSDVIHAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALV 259
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
VVP+I VIG + +S+ LS+A+ + EQ ++QI+ V +FVGE ++++
Sbjct: 260 TLAVVPLIAVIGGLSAAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAY 319
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S + I KG+GLG FCC+AL++W G +V + GG +A + S
Sbjct: 320 SAALAVAQRIGYRSGFAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFS 379
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVC 263
++ G +AL +AP M F +A+ A +IF++++ KP + G ELE + G +++RDV
Sbjct: 380 VMIGGLALGQSAPSMAAFAKARVAAAKIFRMMEHKPSMEREG-GVELEAVTGRVELRDVE 438
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323
F+YPSRPD IL+G SLS+PAGK +ALVGSSG GKSTV+SL+ RFY+P+ G IL+D ++
Sbjct: 439 FSYPSRPDVGILRGLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDL 498
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
+DL+L+ LR+ IG VSQEP+LF ++ +N+ +G A E++ A+ +ANAHSFI +LPD
Sbjct: 499 RDLNLRWLRRQIGLVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPD 558
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
Y+T++G+RG+QLSGGQKQRIAIARA+++NP ILLLDEATSALDSESEKLVQEAL+R M
Sbjct: 559 AYNTQVGERGLQLSGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMI 618
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQ 494
GRT ++IAHR+STI AD++AV++ G ++E GTH L+ D Y RL MQ
Sbjct: 619 GRTTLVIAHRLSTIRKADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQ 670
|
|
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2128 (754.2 bits), Expect = 2.3e-220, P = 2.3e-220
Identities = 446/1126 (39%), Positives = 678/1126 (60%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT+ +I +SS +++DAIG+K H L + F +G +I + W+++LL
Sbjct: 137 DITFFDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLL 196
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
VVP+I + G Y M+ +S ++A + E+ +SQ++TV+AFVGE +KS+
Sbjct: 197 TLGVVPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSY 256
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
S+ + K + + + L KG+G+G+ S+ FC WAL++W +++V ++ G + +++
Sbjct: 257 SNSLKKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILN 316
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS--SKGKELEKIDGNIDIRD 261
++F AL AAP + + + A IF++I S +G L+ + G I+ +
Sbjct: 317 VIFSGFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQK 376
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V FAYPSRP+ ++ + S +I +GK A VG SG GKST+IS+V RFY+P++G+IL+D
Sbjct: 377 VSFAYPSRPN-MVFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGN 435
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
+IK L LK R+ +G VSQEP+LF ++ NI +G +A+ +QI A+ ANA SFI L
Sbjct: 436 DIKSLKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSL 495
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ Y+T++G+ G QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESEK+VQ+AL+
Sbjct: 496 PNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNV 555
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDD 501
M+ RT I++AHR+STI N D I V+ DGQV ETG+H L+ Y L Q P ++
Sbjct: 556 MEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQETEPQEN 615
Query: 502 SRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFR----IW-- 555
SR S + T Q S S+R S QE+ K + F IW
Sbjct: 616 SR---SIMSETCKSQAGS--SSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSSSSMIWEL 670
Query: 556 FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP---QAKQEVGWYSLAFSL 612
LN E ++G++ A +G PLF I + A+Y P K++V ++ F+
Sbjct: 671 IKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAG 730
Query: 613 VGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSD 672
G+ + + LQHYF+ ++GE+ + +R +L++ +L NEI WF+ +N+ GSLTS + +D
Sbjct: 731 AGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAAD 790
Query: 673 TSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQG 732
++V++ ++DR+S IVQ +S + A ++ WR+A V A P L + +G
Sbjct: 791 ATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKG 850
Query: 733 FSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEK-TKRSSRKESIK--- 788
F GD A++ S+ E+ +NIRTVA++ E+ I ++ L K TK + + I
Sbjct: 851 FGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFG 910
Query: 789 YGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPT 848
YG+ Q + C ++A+ LWY +VLI+ K+ F D I+++ + +T S++E L P
Sbjct: 911 YGLSQFLAFC----SYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPD 966
Query: 849 VISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFS 908
++ L F +L R+T+I PD P S ++KG IEF+N+ F YP+RPE+ + N +
Sbjct: 967 IVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLN 1026
Query: 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968
L++ G +A+VGPSG+GKS+V+ L++RFYDP+ G + IDG+ IK NLR LR ++ LVQ
Sbjct: 1027 LRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQ 1086
Query: 969 QEPLLFSCSIRNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028
QEP LFS +I NI YGN K AN H+FI + +GY T G+KG QLSGG
Sbjct: 1087 QEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGG 1146
Query: 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT 1088
QKQR+AIAR +LK P+++LLDEATSALD SE+++ AL+ L + RTT +
Sbjct: 1147 QKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKL---------MKGRTT-VL 1196
Query: 1089 VAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
VAHRL+T+ +D + V+ KG VVE GSH LV+ G Y +L LQ
Sbjct: 1197 VAHRLSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQ 1242
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1074 (383.1 bits), Expect = 1.2e-219, Sum P(2) = 1.2e-219
Identities = 216/503 (42%), Positives = 333/503 (66%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FD D +TG+V+ +S +I+DA+GEK+G + ATF G +IA + W ++L+
Sbjct: 150 DIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLV 209
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ +P++++ GA + ++ ++A +++EQTI I+TV +F GE+ I ++
Sbjct: 210 MLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNY 269
Query: 144 SDCMDKQIIISRGEALIKG----VGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLA 199
+ K ++ + +I+G +GLG V FC +AL +W G ++ K TGG+VL
Sbjct: 270 N----KHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLN 325
Query: 200 AVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNID 258
++++L G+++L +P + F +AA +++F+ I+R+P I SYS+ GK L+ I G+I+
Sbjct: 326 IIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIE 385
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
++DV F YP+RPD+ I +GFSL I +G VALVG SG GKSTV+SL+ RFYDP GD+LI
Sbjct: 386 LKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLI 445
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
D +N+K+ LK +R IG VSQEP LFT S+ DNI G DA E+I A+ +ANA F+
Sbjct: 446 DGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFV 505
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+LP T +G+ G QLSGGQKQRIA+ARAI+K+P ILLLDEATSALD+ESE++VQEAL
Sbjct: 506 DKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEAL 565
Query: 439 ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLR 497
+R M RT +++AHR+ST+ NADMIAV+ G++ E G+H LL+ + Y++L +Q +
Sbjct: 566 DRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEK 625
Query: 498 PIDDSRTKASTVESTSTEQQISV 520
D++ + + S + +Q S+
Sbjct: 626 KSDENAAEEQKMSSIESFKQSSL 648
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1066 (380.3 bits), Expect = 1.1e-216, Sum P(2) = 1.1e-216
Identities = 240/657 (36%), Positives = 373/657 (56%)
Query: 491 FTMQNLRPIDDSRTKASTVESTSTEQQISVV---EQLEEPEESKRELSASTGQEEVKGKR 547
F NL+ S S+V ++S ++V+ L+ S+R TG +
Sbjct: 636 FRNSNLKK---SMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPLP 692
Query: 548 TTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP--QAKQEVGW 605
RI LN+ E+ L++GTVAAA +G PLFG I + A++ P + K++ +
Sbjct: 693 KVSLTRI-AALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELKRDSRF 751
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
+++ F +G+ SL Q Y F V G K + +R + + E+AWF++PQN +G++
Sbjct: 752 WAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTM 811
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725
+R+ +D ++++A++ D +S+ VQ ++S I++ W +AL+ ++P I G +
Sbjct: 812 GARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFV 871
Query: 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785
Q K +GFS D+ + + E + +++ +IRTVASFC EE ++Q K E + K+
Sbjct: 872 QVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGIKQ 931
Query: 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTL 845
G+ GFS + +A + + A L++ + TF + + + ++ I++ T
Sbjct: 932 GFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSSTF 991
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLN 905
P A A F I+DRK++I+ + +KG IE +++ F YP+RP++ +
Sbjct: 992 APDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPDIQIFR 1051
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965
+ L I G VALVG SG+GKS+V++LL RFYDP+ G I +DG +K+ L+ LR Q+G
Sbjct: 1052 DLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLRQQMG 1111
Query: 966 LVQQEPLLFSCSIRNNICYGNXXXXXXXXX---XXXKKANIHDFISSLPDGYDTVVGEKG 1022
LV QEP+LF+ +IR NI YG + AN H FISS+ GYDTVVGE+G
Sbjct: 1112 LVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGERG 1171
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
QLSGGQKQR+AIAR ++K P I+LLDEATSALDAESERV+ AL+ + + +
Sbjct: 1172 IQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRV---------MVN 1222
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSGN 1139
RTT I VAHRL+T+ N+DVI V+ G + E G+H TL+ GVY+ L QL + N
Sbjct: 1223 RTT-IVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMTASN 1278
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2061 (730.6 bits), Expect = 1.0e-215, Sum P(2) = 1.0e-215
Identities = 438/1108 (39%), Positives = 678/1108 (61%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++ FDT++STG+VI+ ++S + V++DAI EK+G+F+ + F +G I W++SL+
Sbjct: 131 DISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQISLV 190
Query: 84 IFLVVPMILVIGATYT-KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+VP I + G Y + + Y+ +A + E+ I ++TV AF GE + S
Sbjct: 191 TLSIVPFIALAGGIYAFVSSGLIVRVRKSYV-KANEIAEEVIGNVRTVQAFTGEEKAVSS 249
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
+ + R L KG+GLG V F WAL+IW ++VV + GGE ++
Sbjct: 250 YQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGESFTTML 309
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDV 262
+++ ++L AAPD+ F +A AA + IFQ+I+R G++L ++G+I +DV
Sbjct: 310 NVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNTE---DKTGRKLGNVNGDILFKDV 366
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F YPSRPD +I + IPAGK+VALVG SG GKST+ISL+ RFY+P++G +++D +
Sbjct: 367 TFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGND 426
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
I+ LDLK LR +IG V+QEP LF ++ +NI G DA E+I NA+ ++ A SFI+ LP
Sbjct: 427 IRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLP 486
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
+ + T++G+RG+QLSGGQKQRI+I+RAIVKNP ILLLDEATSALD+ESEK+VQEAL+R M
Sbjct: 487 EGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVM 546
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQNLRPIDD 501
GRT +++AHR+ST+ NAD+IAVV G++ E+G+H L+ D Y+ L +Q +
Sbjct: 547 VGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAASPNL 606
Query: 502 SRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNER 561
+ T + V ST ++ + E +S + + K + T+ R++ +
Sbjct: 607 NHTPSLPV-STKPLPELPITETTSSIHQSVNQ------PDTTKQAKVTVG-RLYSMIRPD 658
Query: 562 ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY-DPQAKQ-EVGWYSLAFSLVGLFSLF 619
L GT+ + +G PLF I V+YY D + Q EV S+ F + ++
Sbjct: 659 WKYGLC-GTLGSFIAGSQMPLFALGIAQALVSYYMDWETTQNEVKRISILFCCGSVITVI 717
Query: 620 THTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAI 679
HT++H FG++GE+ +R+ +++ +LRNEI WF+K N + L SR+ SD ++++ I
Sbjct: 718 VHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRTI 777
Query: 680 ISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAA 739
+ DR +++++ + ++ A I+S +++WR+ LV A P G + + QG+ G+ +
Sbjct: 778 VVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFMQGYGGNLSK 837
Query: 740 AHTEFISLTSESASNIRTVASFCHEENILQK-AKISLEKTKRSSRKESIKYGVIQGFSLC 798
A+ + L ES SNIRTV +FC EE +L +K LE ++RS R+ + G++ G S
Sbjct: 838 AYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMA-GILYGVSQF 896
Query: 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAP 858
++ +ALWY ++L++K ++F ++ + + +T + E+ L P ++ ++
Sbjct: 897 FIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVS 956
Query: 859 AFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVA 918
FE+LDR+T++ D E E ++G IE + + F+YPSRP+VT+ ++F+L + G +A
Sbjct: 957 VFELLDRRTQVVGDTGE--ELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMA 1014
Query: 919 LVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI 978
LVG SG+GKSSVL+L+LRFYDP GII+IDG+ IK+ L+ LR IGLVQQEP LF+ +I
Sbjct: 1015 LVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTI 1074
Query: 979 RNNICYGNXXXXXXXXXXXXKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038
NI YG K AN H FISSLP+GY T VGE+G Q+SGGQ+QRIAIAR
Sbjct: 1075 YENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARA 1134
Query: 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098
+LK P I+LLDEATSALD ESERV+ AL+ L + + +A R + I + ++ + +
Sbjct: 1135 VLKNPEILLLDEATSALDVESERVVQQALDRLM-RDRTTVVVAHRLSTIKNSDMISVIQD 1193
Query: 1099 SDVIVVMDKGEVVEM--GSHSTLVAESQ 1124
+I +VE G +S L++ Q
Sbjct: 1194 GKIIEQGSHNILVENKNGPYSKLISLQQ 1221
|
|
| TAIR|locus:2088897 ABCB15 "ATP-binding cassette B15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2058 (729.5 bits), Expect = 6.1e-213, P = 6.1e-213
Identities = 448/1131 (39%), Positives = 676/1131 (59%)
Query: 24 EVGAFDTDL-STGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSL 82
+VG FD + ST VIT VSS VI+D + EKL +FL S +TF ++ I W +++
Sbjct: 125 DVGYFDLHVTSTSDVITSVSSDSFVIQDVLSEKLPNFLMSASTFVGSYIVGFILLWRLAI 184
Query: 83 LIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
+ + ++++ G Y + + ++S +EA + EQ IS ++TV+AF GER I
Sbjct: 185 VGLPFIVLLVIPGLMYGRALISISRKIREEYNEAGFVAEQAISSVRTVYAFSGERKTISK 244
Query: 143 FSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVM 202
FS + + + + L KG+ +G +TF W + W G+ +V + GG V A
Sbjct: 245 FSTALQGSVKLGIKQGLAKGITIGS-NGITFAMWGFMSWYGSRMVMYHGAQGGTVFAVAA 303
Query: 203 SILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRD 261
+I G ++L +++ F +A + G I +VI R P+I S + G +LEKI G ++ ++
Sbjct: 304 AIAIGGVSLGGGLSNLKYFFEAASVGERIMEVINRVPKIDSDNPDGHKLEKIRGEVEFKN 363
Query: 262 VCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
V F YPSR + I F L +P+GK VALVG SG GKSTVISL+ RFYDP G+ILID +
Sbjct: 364 VKFVYPSRLETSIFDDFCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPLAGEILIDGV 423
Query: 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
+I L +K LR +G VSQEP+LF ++ +NI G DA + + A+ +NAH+FISQL
Sbjct: 424 SIDKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDASMDDVVEAAKASNAHNFISQL 483
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
P+ Y T++G+RGVQ+SGGQKQRIAIARAI+K+P ILLLDEATSALDSESE++VQEALE A
Sbjct: 484 PNGYETQVGERGVQMSGGQKQRIAIARAIIKSPTILLLDEATSALDSESERVVQEALENA 543
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDF-YNRLFTMQNLRPID 500
GRT ILIAHR+STI NAD+I+VV++G + ETG+H L++ D Y+ L +Q + D
Sbjct: 544 SIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTLVHLQQIEKQD 603
Query: 501 -DSRTKASTVESTSTE-QQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI-FFRIWFC 557
+ K + S + + S V L + ST + + + + F+
Sbjct: 604 INVSVKIGPISDPSKDIRNSSRVSTLSRSSSANSVTGPSTIKNLSEDNKPQLPSFKRLLA 663
Query: 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY---DPQAKQEVGWYSLAFSLVG 614
+N E + + G ++A G +P + + + ++ Y+ + K++ Y+L+F +
Sbjct: 664 MNLPEWKQALYGCISATLFGAIQPAYAYSLGSMVSVYFLTSHDEIKEKTRIYALSFVGLA 723
Query: 615 LFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTS 674
+ S + QHY F +GE +R + + VL E+ WF++ +N +G++ SR+ D +
Sbjct: 724 VLSFLINISQHYNFAYMGEYLTKRIRERMLSKVLTFEVGWFDRDENSSGAICSRLAKDAN 783
Query: 675 MVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFS 734
+V++++ DRM+++VQ +S++ IA + LV+ WR+ALV AV P + + + S
Sbjct: 784 VVRSLVGDRMALVVQTVSAVTIAFTMGLVIAWRLALVMIAVQPVIIVCFYTRRVLLKSMS 843
Query: 735 GDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQG 794
+ A E L +E+ SN+RT+ +F +E I++ LEK + S R+ESI+ G
Sbjct: 844 KKAIKAQDESSKLAAEAVSNVRTITAFSSQERIMKM----LEKAQESPRRESIRQSWFAG 899
Query: 795 FSLC----LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVI 850
F L L + A+ WY LI T + + I T I + ++ +
Sbjct: 900 FGLAMSQSLTSCTWALDFWYGGRLIQDGYITAKALFETFMILVSTGRVIADAGSMTTDLA 959
Query: 851 SAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQ 910
+ F +LDR T I+P+ P+ E+ RI G++EF ++ F+YP+RP+V + NFS++
Sbjct: 960 KGSDAVGSVFAVLDRYTSIDPEDPDGYETERITGQVEFLDVDFSYPTRPDVIIFKNFSIK 1019
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQE 970
IE G A+VGPSG+GKS+++ L+ RFYDP +GI+ IDG+ I+ Y+LR LR I LV QE
Sbjct: 1020 IEEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRRHIALVSQE 1079
Query: 971 PLLFSCSIRNNICYGNXXXXXXXXXX--XXKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028
P LF+ +IR NI YG K AN HDFI+SL +GYDT G++G QLSGG
Sbjct: 1080 PTLFAGTIRENIIYGGVSDKIDEAEIIEAAKAANAHDFITSLTEGYDTYCGDRGVQLSGG 1139
Query: 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT 1088
QKQRIAIAR +LK P+++LLDEATSALD++SERV+ ALE + + RT+ +
Sbjct: 1140 QKQRIAIARAVLKNPSVLLLDEATSALDSQSERVVQDALERV---------MVGRTS-VV 1189
Query: 1089 VAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ-GVYSRLYQLQAFSG 1138
+AHRL+T+ N D I V+DKG++VE G+HS+L+++ G+Y L LQ SG
Sbjct: 1190 IAHRLSTIQNCDAIAVLDKGKLVERGTHSSLLSKGPTGIYFSLVSLQTTSG 1240
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P06795 | MDR1B_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3731 | 0.9631 | 0.8597 | yes | no |
| P34712 | PGP1_CAEEL | 3, ., 6, ., 3, ., 4, 4 | 0.3607 | 0.9561 | 0.8243 | yes | no |
| P21449 | MDR2_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3627 | 0.9613 | 0.8581 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3694 | 0.9613 | 0.8554 | yes | no |
| Q8LPK2 | AB2B_ARATH | No assigned EC number | 0.4135 | 0.9473 | 0.8476 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_XV000001 | multidrug/pheromone exporter, MDR family, ABC transporter family (1275 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1139 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-128 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-126 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-121 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-120 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-114 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-110 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-109 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-109 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-104 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-101 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-101 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-100 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-100 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-100 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-98 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-97 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-96 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-87 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-81 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-81 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-81 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-80 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-80 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-80 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-79 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-77 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-77 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-74 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 7e-74 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-72 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-71 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-70 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-70 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-69 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-68 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-68 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-67 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-66 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-65 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-64 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-64 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-64 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-64 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 6e-64 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-62 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-62 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-62 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-61 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-61 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-61 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-60 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-60 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-60 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-58 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-57 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-57 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-56 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-55 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-55 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-54 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-52 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-52 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-51 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-49 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-48 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-48 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 9e-48 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-47 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-45 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-45 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-44 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-43 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-43 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-43 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-43 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-43 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-41 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-40 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-40 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-40 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-39 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-39 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-39 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-38 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-38 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 9e-38 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-37 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-37 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-37 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-37 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-37 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-36 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 9e-36 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-35 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-35 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-35 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-35 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-35 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-35 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-35 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-35 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-34 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-34 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-34 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-34 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-34 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-34 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-34 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-33 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-33 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-33 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-33 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-33 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-32 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-32 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-32 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-32 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-32 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-32 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-32 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-32 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-32 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-32 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-31 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-31 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-30 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-30 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-30 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-30 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-30 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-30 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 7e-30 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-29 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-29 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-29 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-29 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-29 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-29 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-29 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-29 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-29 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-29 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-29 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-29 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-28 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-28 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-28 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-28 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-28 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-28 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-28 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-28 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-28 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-28 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-28 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-27 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-27 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-27 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-27 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-27 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-27 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-27 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-27 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-27 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-27 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-27 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-27 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-26 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-26 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-26 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-26 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-26 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-26 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-26 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-26 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-26 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 5e-26 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-26 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-26 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-26 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-26 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-26 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-25 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-25 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-25 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-25 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-25 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-25 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-25 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-25 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-25 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-25 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-25 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-25 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-25 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-25 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-25 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-25 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-25 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-25 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 9e-25 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-25 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-24 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-24 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-24 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-24 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-24 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-24 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-24 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-24 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-24 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-24 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-24 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-24 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-23 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-23 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-23 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-23 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-23 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-23 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-23 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-23 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-23 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-23 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-23 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-23 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-23 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-23 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-23 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-23 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-23 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-22 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-22 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-22 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-22 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-22 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-22 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-22 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-22 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-22 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-22 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-22 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-22 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-22 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-22 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 8e-22 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-21 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-21 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-21 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-21 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-21 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-21 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-21 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-21 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-21 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-21 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-21 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-21 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-21 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-21 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-20 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-20 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-20 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 1e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-20 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-20 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-20 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-20 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-20 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-20 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-20 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-20 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-20 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-20 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 5e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-20 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-20 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-20 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 7e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-20 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-20 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-20 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-19 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-19 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-19 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-19 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-19 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-19 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-19 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-19 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-19 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-19 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-19 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-19 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-19 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-19 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-18 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-18 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-18 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-18 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-18 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-18 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-18 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-18 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-18 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-18 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-17 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-17 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-17 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-17 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-17 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-17 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-17 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-17 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-17 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-16 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-16 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-16 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-16 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-16 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-16 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-16 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-16 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-15 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-15 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-15 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-15 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 9e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-14 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-14 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-14 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-14 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-13 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-13 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-13 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-13 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-13 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-13 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-12 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-12 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-12 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-12 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-12 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 9e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-11 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-11 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-11 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 8e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-10 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-10 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-10 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-10 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 5e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-09 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-09 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-08 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 7e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 9e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-07 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-07 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 9e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 8e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 1e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 4e-04 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-04 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.002 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.003 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 391 bits (1006), Expect = e-128
Identities = 151/238 (63%), Positives = 189/238 (79%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ ++V F YPSRPD ILKG SL+IP GK VALVGSSGCGKSTV+SL+ RFYDP++G+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
L+D ++I+DL+L+ LR IG VSQEP LF G++ +NI+ G DA DE++ A+ AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
FI LPD Y T +G+RG QLSGGQKQRIAIARA+++NP ILLLDEATSALD+ESEKLVQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
AL+RAM+GRT I+IAHR+STI NAD+IAV+++GQV E GTH L+ Y +L Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 384 bits (989), Expect = e-126
Identities = 146/249 (58%), Positives = 184/249 (73%), Gaps = 11/249 (4%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ F YPSRP+V +L SL I PG VALVG SG GKS+V++LL RFYDP G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
L+DG I++ NLR LRSQIGLV QEP+LF +I NI YG A++ E+ E +KKANIHD
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
FI SLPDGYDT+VGE+G QLSGGQKQRIAIAR LL+ P I+LLDEATSALDAESE+++
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
AL+ + RTT I +AHRL+T+ N+D+I V+ G+VVE G+H L+A+ G
Sbjct: 181 ALDRA---------MKGRTT-IVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-G 229
Query: 1126 VYSRLYQLQ 1134
VY++L + Q
Sbjct: 230 VYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-121
Identities = 176/468 (37%), Positives = 278/468 (59%), Gaps = 2/468 (0%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FD + +G+V++ +++ ++++ IG L L + G+++ I +++ L+ L
Sbjct: 109 FDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
VP++L+ + +R+ +S +++A S +T+ I+TV AF E +E F +
Sbjct: 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAV 227
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFG 207
+K +R + + + + F ++WVGA V A + + G + V +
Sbjct: 228 EKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMV 287
Query: 208 AIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKEL-EKIDGNIDIRDVCFAY 266
A ++ + +A A + +++Q +P I + K L + G I+ V FAY
Sbjct: 288 AGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAY 347
Query: 267 PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL 326
P+RPDQ L G +L++ G+ VALVG SG GKST+ L+ RFYDP +G IL+D ++++ L
Sbjct: 348 PARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407
Query: 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
D LR + V Q+P LF S+M+NI+ G DA DE++ A+ A+AH FIS LP+ Y
Sbjct: 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYD 467
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
T LG+RGV LSGGQ+QRIAIARAI+K+ PILLLDEATSALD+ESE+LVQ+ALE M+GRT
Sbjct: 468 TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRT 527
Query: 447 VILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
++IAHR++T++ AD I V++ G++ GTH L+ Y RL +Q
Sbjct: 528 TLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-120
Identities = 204/586 (34%), Positives = 322/586 (54%), Gaps = 23/586 (3%)
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA 609
+ R+ L + LL ++ + +A + PL II +A E+ L
Sbjct: 3 LLRRLLKYLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLA-----DLGELLELLLL 57
Query: 610 FSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRI 669
L+ L LQ Y +G+K + +LRR L+ +LR +++F+K +G L SR+
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRL 115
Query: 670 VSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729
+D V ++S + ++ I ++ + ++ + WR+AL+ ++P + + A+
Sbjct: 116 TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175
Query: 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789
++ S A E + ES S IR + +F E+ L++ + + E+ +R++ + S
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235
Query: 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTV 849
++ L L ++ + L L+ T + I +L ++ +
Sbjct: 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295
Query: 850 ISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSL 909
A FE+LD + E+E D P+ + G IEF+N+ F+YP + VL + S
Sbjct: 296 QRASAAAERLFELLDEEPEVE-DPPDPLK--DTIGSIEFENVSFSYPGKK--PVLKDISF 350
Query: 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQ 969
IEPG KVA+VGPSG+GKS+++ LLLR YDP G ILIDG I++ +L LR +IG+V Q
Sbjct: 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 970 EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029
+PLLFS +IR NI G A++ EI E K AN H+FI++LPDGYDT+VGE+G LSGGQ
Sbjct: 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470
Query: 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITV 1089
+QR+AIAR LL+ P I++LDEATSALD E+E +I AL+ +L T + +
Sbjct: 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALK----------KLLKGRTTLII 520
Query: 1090 AHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135
AHRL+T+ N+D I+V+D G +VE G+H L+A G+Y+RLYQ Q
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLA-KGGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 365 bits (940), Expect = e-114
Identities = 166/465 (35%), Positives = 281/465 (60%), Gaps = 10/465 (2%)
Query: 33 STGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMIL 92
+G +I+ +++ + + + + L +S +++ W ++L++ L++P++
Sbjct: 107 KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166
Query: 93 VIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQII 152
++ + ++ +S L E + + +++S I+ + AF E E+K F + ++
Sbjct: 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRR 226
Query: 153 ISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAV--MSILFGAI- 209
+ + ++ + + ++ L++ +G +V + T G + A + + L I
Sbjct: 227 ANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPIL 286
Query: 210 ALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSR 269
L +Q +A AA +F+++ +P + L+ G+I+ +V F+YP
Sbjct: 287 QLGEVVSLLQ---RASAAAERLFELLDEEPEVE--DPPDPLKDTIGSIEFENVSFSYP-- 339
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329
+ +LK S SI G+ VA+VG SG GKST+I L+ R YDP++G+ILID ++I+D+ L
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399
Query: 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
SLRK IG VSQ+P LF+G++ +NI +G DA DE+I A +ANAH FI+ LPD Y T +
Sbjct: 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIV 459
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVIL 449
G+RGV LSGGQ+QR+AIARA+++NPPIL+LDEATSALD+E+E L+Q+AL++ ++GRT ++
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519
Query: 450 IAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
IAHR+STI NAD I V+++G++ E GTH LL Y RL+ Q
Sbjct: 520 IAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-110
Identities = 188/550 (34%), Positives = 306/550 (55%), Gaps = 37/550 (6%)
Query: 597 PQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFE 656
+ + Y +V L + Y +GE+ + ++RR ++ ++ ++F+
Sbjct: 51 KDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFD 110
Query: 657 KPQNDAGSLTSRIVSDTSMVKAIISDRMSV----IVQCISSILIATIVS-----LVVDWR 707
K N +G + SR+ +DT++++++I +S+ + CI +++ I S LV+
Sbjct: 111 K--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL--- 165
Query: 708 MALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENI 767
V ++P G ++ S + S D A + E+ IRTV +F HE+
Sbjct: 166 -LAVPLVLLPILLFGRRVRKLSRE--SQDRIADAGSYAG---ETLGAIRTVQAFGHEDAE 219
Query: 768 LQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTA--VLIDKKQATFRDG 825
+ ++EK ++R+ ++ + L A LW A V+ K A
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQ 279
Query: 826 IRAYQIFS-LTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKG 884
Y + ++ +++E+W + A L E+L + +I+ A + ++G
Sbjct: 280 FVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKTLPVPLRG 336
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IEF+ + F YP+RP+ L+ +L + PG VALVGPSGAGKS++ LLLRFYDP G
Sbjct: 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR 396
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
IL+DG +++ + LR+++ LV Q+P+LF+ S+ NI YG A++ E+ ++ A+ H
Sbjct: 397 ILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAH 456
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
+FIS+LP+GYDT +GE+G LSGGQ+QRIAIAR +LK I+LLDEATSALDAESE+++
Sbjct: 457 EFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQ 516
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
ALE L + RTT I +AHRLATV+ +D IVVMD+G +V G+H+ L+A+
Sbjct: 517 QALETL---------MKGRTTLI-IAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG- 565
Query: 1125 GVYSRLYQLQ 1134
G+Y+RL +LQ
Sbjct: 566 GLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 340 bits (874), Expect = e-109
Identities = 127/235 (54%), Positives = 169/235 (71%), Gaps = 1/235 (0%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++ ++V F YP +L+ SL IPAG+ VALVG SG GKST+++L+ RFYD +G I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
LID +++D L SLR+ IG VSQ+ LF ++ +NI G A E++ A+ ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
FI +LP+ Y T +G+RGV+LSGGQ+QRIAIARA++K+PPIL+LDEATSALD+ESE+LVQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491
ALER M+ RT +IAHR+STI NAD I V+EDG++ E GTH LL Y +L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-109
Identities = 203/610 (33%), Positives = 313/610 (51%), Gaps = 44/610 (7%)
Query: 532 RELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTV---AAAFSGISKPLFGFFII 588
E A GQ E + FR+ L+ R+ L+ V ++ + P + +I
Sbjct: 134 SEKEAEQGQSETA----DLLFRL-LGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVI 188
Query: 589 TIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN----LRRTLY 644
P A + A + L S ++ G M +R L+
Sbjct: 189 DTLGGDKGPPA------LASAIFFMCLLS-IASSVSAGLRGGSFNYTMARINLRIREDLF 241
Query: 645 TGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVV 704
+LR ++ +F++ N G LTSR+ SDT + +S ++V+++ + +L L +
Sbjct: 242 RSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299
Query: 705 DWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE 764
R+ +V +P F+ + K Q S + A + + E+ S +RTV SF E
Sbjct: 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAE 359
Query: 765 ENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRD 824
E + K +LE+T + ++++++ Y + L + + L+Y L+ + +
Sbjct: 360 EGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVS-SG 418
Query: 825 GIRAYQIFSLTVPS-ITELWTLIPTVISAITVLAPAFEILDRKTEIEPD---APESSESG 880
+ ++ ++ + + L + ++ A+ FE LDRK I AP
Sbjct: 419 NLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL----- 473
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
++G IEFQ++ F+YP+RP+V VL + + PG VALVGPSG+GKS+V ALL Y P
Sbjct: 474 NLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP 533
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKK 1000
G +L+DG + +Y+ L Q+ LV QEP+LFS S+R NI YG + EI+ +K
Sbjct: 534 TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKA 593
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
AN HDFI P+GYDT VGEKG QLSGGQKQRIAIAR L+++P +++LDEATSALDAE E
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
+ L+ ASRT + +AHRL+TV +D I+V+ KG VVEMG+H L+
Sbjct: 654 Q----LLQESR-------SRASRTV-LLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701
Query: 1121 AESQGVYSRL 1130
E QG Y L
Sbjct: 702 -EDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-104
Identities = 162/466 (34%), Positives = 256/466 (54%), Gaps = 8/466 (1%)
Query: 33 STGKVITGVSSHMSVIRDAI-GEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMI 91
S G++I+ V + IR+ + G L + ++ + W+++L++ +P+
Sbjct: 249 SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYS-WKLTLIVLAAIPLN 306
Query: 92 LVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQI 151
++I + + + + +E S + +TI I+TV A E + + + KQ+
Sbjct: 307 VLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQV 366
Query: 152 IISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFG-AIA 210
I + + + + LI+W GA++V T G+++A M L G I+
Sbjct: 367 NIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNM--LAGYFIS 424
Query: 211 LTYAAPDMQV-FNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSR 269
+ F QAK A + ++ P L K+ G I+ +V F Y
Sbjct: 425 PITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD 484
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329
D +L+ SL IP G+ VA+VG SG GKST++ L+ Y P G IL+D +++ D+DL
Sbjct: 485 -DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLA 543
Query: 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
SLR+ +G V Q+P LF+GS+ +NI +GN +A DE+I A+ +A AH FI LP Y T +
Sbjct: 544 SLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVIL 449
G+ G LSGGQ+QR+A+ARA++ P ILLLDEATSALD E+E ++ + L + +QGRTVI+
Sbjct: 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVII 663
Query: 450 IAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495
IAHR+STI +AD I V++ G++ E G+H LL Y RL+ Q
Sbjct: 664 IAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-101
Identities = 161/476 (33%), Positives = 267/476 (56%), Gaps = 22/476 (4%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
++G FD + TG++ + +SS + ++ + L + + + ++++
Sbjct: 248 DLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
+ +P++ + + KR +S +++A + E+ +S ++TV +F E E F
Sbjct: 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366
Query: 144 SDCMDKQIIISRGEALIKGVGL------GMFQSVTFCCWALIIWVGAVVVTAKRSTGGEV 197
+ +++ + +++ +AL L GM V L+++ G +V + + G +
Sbjct: 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQV------LVLYYGGQLVLTGKVSSGNL 420
Query: 198 LAAV---MSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKID 254
++ + + L+Y M QA A ++F+ + RKP I + ++
Sbjct: 421 VSFLLYQEQLGEAVRVLSYVYSGMM---QAVGASEKVFEYLDRKPNIP-LTGTLAPLNLE 476
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G I+ +DV F+YP+RPD +LKG + ++ G++VALVG SG GKSTV +L+ Y P+ G
Sbjct: 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+L+D + + D L + + V QEP LF+GS+ +NI G D DE+I A+ ANA
Sbjct: 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANA 596
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FI + P+ Y TE+G++G QLSGGQKQRIAIARA+V+ P +L+LDEATSALD+E E+L+
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490
QE+ RA RTV+LIAHR+ST+ AD I V++ G V E GTH L++ Y L
Sbjct: 657 QESRSRA--SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-101
Identities = 124/249 (49%), Positives = 170/249 (68%), Gaps = 13/249 (5%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ F Y P VL + S I G KVA+VGPSG+GKS++L LL RFYD + G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
LIDG+ I+E L LR IG+V Q+ +LF+ +I NI YG A++ E++E +K A IHD
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
I PDGYDT+VGE+G +LSGG+KQR+AIAR +LK P I+LLDEATSALD +ER I +
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
AL + RTT I +AHRL+T++N+D I+V+ G +VE G+H L+A+ G
Sbjct: 179 ALRDV---------SKGRTT-IVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GG 227
Query: 1126 VYSRLYQLQ 1134
+Y+ +++ Q
Sbjct: 228 LYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-100
Identities = 126/246 (51%), Positives = 173/246 (70%), Gaps = 12/246 (4%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+EF+N+ F YP VL + SL I G VALVGPSG+GKS+++ L+ RFYD + G I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
LIDG +++Y L LR QIGLV Q+ LF+ ++ NI YG A+ E+ E ++ AN H+
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
FI LP+GYDTV+GE+G +LSGGQ+QRIAIAR LLK P I++LDEATSALD ESER++ +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
ALE L + +RTT +AHRL+T+ N+D IVV++ G++VE G+H L+A G
Sbjct: 180 ALERL---------MKNRTT-FVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGG 228
Query: 1126 VYSRLY 1131
VY++L+
Sbjct: 229 VYAKLH 234
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = e-100
Identities = 184/541 (34%), Positives = 285/541 (52%), Gaps = 42/541 (7%)
Query: 607 SLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLT 666
++ L LF L+ Y +G++ L + +LR +++FEK G +
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRS--VGEII 254
Query: 667 SRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVV----DWRMALVAWAVMPCHFIG 722
SR V + ++ ++ I+ I +L A ++ L V W++ L+ A +P + +
Sbjct: 255 SR-VRELEQIREFLT---GSILTLIIDLLFA-LIFLAVMFLYSWKLTLIVLAAIPLNVLI 309
Query: 723 GLI-----QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEK 777
LI + K+ + + S E+ I TV + E + L K
Sbjct: 310 TLIFQPLLRRKTRKLIEESAEQQ-----SFLVETIKGIETVKALAAEPRFRSQWDNRLAK 364
Query: 778 TKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQI----FS 833
K ++ L ++ + LW+ A+L+ + + T + A+ + F
Sbjct: 365 QVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTL-GQLVAFNMLAGYFI 423
Query: 834 LTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKF 893
+ +++LWT A+ L +ILD E E D +++G IEF+N+ F
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLG---DILDTPPEQEGDKTLIHLP-KLQGEIEFENVSF 479
Query: 894 NYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953
Y VL + SL+I PG KVA+VG SG+GKS++L LLL Y P +G IL+DG +
Sbjct: 480 RYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538
Query: 954 EYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDG 1013
+ +L LR Q+G V Q+P LFS SIR NI GN A++ EI+E ++ A H+FI +LP G
Sbjct: 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMG 598
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
YDT VGE G LSGGQ+QR+A+AR LL +P I+LLDEATSALD E+E +I+ L +
Sbjct: 599 YDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--- 655
Query: 1074 SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133
L RT I +AHRL+T+ ++D I+V+D+G++VE GSH L+A+ G+Y+RLYQ
Sbjct: 656 ------LQGRTV-IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQ 707
Query: 1134 Q 1134
Q
Sbjct: 708 Q 708
|
Length = 709 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 314 bits (808), Expect = e-100
Identities = 124/238 (52%), Positives = 167/238 (70%), Gaps = 2/238 (0%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ +V FAY P + +LK S +IPAGK VA+VG SG GKST++ L+ RFYD S+G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
LID +I+++ L SLR+ IG V Q+ LF ++ NI+ G DA DE++ A+ A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
I + PD Y T +G+RG++LSGG+KQR+AIARAI+KNPPILLLDEATSALD+ +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
AL +GRT I+IAHR+STIVNAD I V++DG++ E GTH LL Y ++ Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = 2e-98
Identities = 190/608 (31%), Positives = 303/608 (49%), Gaps = 63/608 (10%)
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA 609
F R+W + LV+ VA ++ + + + + + + W L
Sbjct: 1 TFRRLWSYVRP-YKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLV 59
Query: 610 FSLVGLFSL--FTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTS 667
++GL L + Y V K + ++R ++ +L +++F++ G+L S
Sbjct: 60 --VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLS 115
Query: 668 RIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQ- 726
RI D+ V + +D V+V+ +++ IV L W++ L+ ++P + L++
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP--VLSILMRR 173
Query: 727 -AKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQK----AKISLEKTKRS 781
+K + S + + + ++ E+ R V F + ++ + + +
Sbjct: 174 VSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233
Query: 782 SRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITE 841
+ SI + Q L + A+A+ L QA Q SLT T
Sbjct: 234 TSAGSISSPITQ---LI---ASLALAVVLFIALF---QA---------QAGSLTAGDFTA 275
Query: 842 LWTLIPTVISAI-----------TVLAPA---FEILDRKTEIEPDAPESSESGRIKGRIE 887
T + +I + LA A F +LD + E D + R +G +E
Sbjct: 276 FITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLD--SPPEKDT-GTRAIERARGDVE 332
Query: 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947
F+N+ F YP R + L++ SL IEPG VALVG SG+GKS+++ L+ RFY+P+ G IL+
Sbjct: 333 FRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391
Query: 948 DGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDF 1006
DG + +Y L LR Q+ LV Q+ +LF+ +I NNI YG E A AEI A DF
Sbjct: 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDF 451
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
+ LP G DT +GE G LSGGQ+QR+AIAR LLK I++LDEATSALD ESER++ +A
Sbjct: 452 VDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA 511
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGV 1126
LE L RTT + +AHRL+T+ +D IVVMD G +VE G+H+ L+A + G+
Sbjct: 512 LERLMQ---------GRTT-LVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GL 560
Query: 1127 YSRLYQLQ 1134
Y++L+ +Q
Sbjct: 561 YAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = 2e-97
Identities = 155/426 (36%), Positives = 246/426 (57%), Gaps = 18/426 (4%)
Query: 78 WEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGER 137
W+++L++ +++P++ ++ +KR+ +S + + T++ E+T+ + V F G+
Sbjct: 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQA 213
Query: 138 SEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWAL----IIWVGAVVVTAKRST 193
E + F D +R A+ + +T +L ++++ A T
Sbjct: 214 YETRRF----DAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLT 269
Query: 194 GGEVLAAVMSI--LFGAI-ALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKEL 250
G+ A + ++ L + +LT MQ + AA +F ++ P + + +
Sbjct: 270 AGDFTAFITAMIALIRPLKSLTNVNAPMQ---RGLAAAESLFTLLDSPPEKD--TGTRAI 324
Query: 251 EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
E+ G+++ R+V F YP R D+ L SL I G+ VALVG SG GKST+++L+ RFY+
Sbjct: 325 ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE 383
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM-DADDEQIYNAS 369
P +G IL+D ++ D L SLR+ + VSQ+ LF ++ +NI G AD +I A
Sbjct: 384 PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERAL 443
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
A A F+ +LP T +G+ GV LSGGQ+QR+AIARA++K+ PIL+LDEATSALD+E
Sbjct: 444 AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 430 SEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489
SE+LVQ ALER MQGRT ++IAHR+STI AD I V++DG++ E GTH+ LL + Y +
Sbjct: 504 SERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQ 563
Query: 490 LFTMQN 495
L MQ
Sbjct: 564 LHNMQF 569
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (782), Expect = 4e-96
Identities = 116/228 (50%), Positives = 167/228 (73%), Gaps = 2/228 (0%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G I+ +V F+Y + +LK + SI G+ VA+VG +G GK+T+I+L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
ILID ++I+D+ KSLR IG V Q+ LF+G++M+NI++G +A DE++ A+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H FI +LP+ Y T LG+ G LS G++Q +AIARA++++P IL+LDEATS +D+E+EKL+
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
QEALE+ M+GRT I+IAHR+STI NAD I V++DG++ E GTH LL
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 3e-87
Identities = 112/238 (47%), Positives = 165/238 (69%), Gaps = 12/238 (5%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
G IEF+N+ F+Y + VL + + I+PG VA+VGP+GAGK++++ LL+RFYDP +G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
ILIDG I++ + + LRS IG+V Q+ LFS +I NI G A++ E++E +K+A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
HDFI LP+GYDTV+GE G LS G++Q +AIAR +L+ P I++LDEATS +D E+E++I
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
ALE L RT+ I +AHRL+T+ N+D I+V+D G+++E G+H L+A
Sbjct: 179 QEALEKLMKG---------RTS-IIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 281 bits (722), Expect = 5e-83
Identities = 153/427 (35%), Positives = 237/427 (55%), Gaps = 22/427 (5%)
Query: 78 WEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGER 137
W++SL++ ++ P++ + +KR +S + + T+ EQ + K V F G+
Sbjct: 165 WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 138 SEIKSF---SDCMDKQIIISRGEALIKGVGL--GMFQSVTFCCWALIIWVGAVVVTAKRS 192
E K F S+ M +Q G ++ + + Q + A +++ +
Sbjct: 225 VETKRFDKVSNRMRQQ-----GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTL 279
Query: 193 TGGE---VLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGK- 248
T G V +++++++ +LT Q A F I + Q K +GK
Sbjct: 280 TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK------DEGKR 333
Query: 249 ELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308
+E+ G+I+ R+V F YP + + L+ + IPAGK VALVG SG GKST+ +L+ RF
Sbjct: 334 VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392
Query: 309 YDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA-DDEQIYN 367
YD G+IL+D +++D L SLR + VSQ LF ++ +NI + EQI
Sbjct: 393 YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEE 452
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A+ MA A FI+++ + T +G+ GV LSGGQ+QRIAIARA++++ PIL+LDEATSALD
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 428 SESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
+ESE+ +Q AL+ + RT ++IAHR+STI AD I VVEDG++ E GTH LL + Y
Sbjct: 513 TESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572
Query: 488 NRLFTMQ 494
+L MQ
Sbjct: 573 AQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 2e-81
Identities = 154/435 (35%), Positives = 232/435 (53%), Gaps = 23/435 (5%)
Query: 66 FFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTIS 125
F+S L V+ SL+ + ++ + +G KR+ K + ATS + ++++
Sbjct: 275 FYSPTLTGVVI---GSLVCYALLSVF--VGPILRKRV----EDKFERSAAATSFLVESVT 325
Query: 126 QIKTVFAFVGERSEIKSFSDCMDKQIIISRGE---ALIKGVGLGMFQSVTFCCWALIIWV 182
I+T+ A E + + + S I G + + Q +TF A+++W
Sbjct: 326 GIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF---AILLWF 382
Query: 183 GAVVVTAKRSTGGEVLAAVMSILFGAIA--LTYAAPDMQVFNQAKAAGFEIFQVIQRKPR 240
GA +V + G+++A M L G + + A Q F Q A E I P
Sbjct: 383 GAHLVIGGALSPGQLVAFNM--LAGRVTQPVLRLAQLWQDFQQTGIA-LERLGDILNSPT 439
Query: 241 ISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKS 299
S+ L ++ G I ++ F Y PD +L +L I G+ + +VG SG GKS
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 300 TVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD 359
T+ L+ R Y P +G +L+D +++ D LR+ +G V QE LF+ S+ DNI + N
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
A E + +A+ +A AH FIS+LP Y+TE+G++G LSGGQ+QRIAIARA+V NP IL+
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHS 479
DEATSALD ESE L+ + +GRTVI+IAHR+ST+ D I V+E GQ+ E+G H
Sbjct: 618 DEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677
Query: 480 LLQTSDFYNRLFTMQ 494
LL Y RL+ Q
Sbjct: 678 LLALQGLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 2e-81
Identities = 114/229 (49%), Positives = 157/229 (68%), Gaps = 10/229 (4%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
+KG ++FQN+ F YP+RP+ VL + S + PG ALVGPSG+GKS+V+ALL FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKA 1001
G +L+DGK I +Y + L S++ LV QEP+LF+ S+++NI YG ++ S + E ++KA
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ H FIS L GYDT VGEKG QLSGGQKQR+AIAR L++ P +++LDEATSALDAESE+
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 1062 VIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
+ AL R T + +AHRL+TV +D I+V+D G +
Sbjct: 188 QVQQALYDWP----------ERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 5e-81
Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 43/214 (20%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ ++V F+YP RP + +LK SL+I G+ VA+VG SG GKST++ L+ R YDP++G+I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
LID ++++DLDL+SLRKNI V Q+P LF+G++ +NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
LSGGQ+QRIAIARA++++PPIL+LDEATSALD E+E L+ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQ 470
AL +G+TVI+IAHR+STI +AD I V++DG+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 1e-80
Identities = 125/292 (42%), Positives = 180/292 (61%), Gaps = 4/292 (1%)
Query: 219 QVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGF 278
QVF A E F+V P + +L ++ G ++ DV F+Y + + +
Sbjct: 298 QVFMAA-PKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDV 354
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338
S G+ VA+VG +G GKST+I+L+ R +DP +G ILID +I+ + SLR+NI V
Sbjct: 355 SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414
Query: 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398
Q+ LF S+ DNI+VG DA DE++ A+ A AH FI + PD Y T +G+RG QLSG
Sbjct: 415 FQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474
Query: 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIV 458
G++QR+AIARA++K+PPIL+LDEATSALD E+E V+ AL+ M+GRT +IAHR+ST+
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR 534
Query: 459 NADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVE 510
NAD I V ++G+V E+G+ L+ + L Q + +D R K E
Sbjct: 535 NADRILVFDNGRVVESGSFDELVARGGRFAALLRAQGML-QEDERRKQPAAE 585
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 277 bits (710), Expect = 3e-80
Identities = 178/547 (32%), Positives = 273/547 (49%), Gaps = 55/547 (10%)
Query: 607 SLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLT 666
+LA V +F L+ Y F + + L LY +L + +FE + G
Sbjct: 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRR--VGDTV 239
Query: 667 SRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMA----LVAWAVMPCH--- 719
+R+ + + ++V++ L+ +V L V + + V + C+
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLD-----LLFVVVFLAVMFFYSPTLTGVVIGSLVCYALL 294
Query: 720 --FIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEK 777
F+G +++ + F +AA S ES + I T+ + E + L
Sbjct: 295 SVFVGPILRKRVEDKFERSAAAT-----SFLVESVTGIETIKATATEPQFQNRWDRQLAA 349
Query: 778 TKRSSRKESIKYGVIQGFSLCLWN-IAHAVALWYTAVLIDKKQATFRDGIRAYQIFS--L 834
+S + G I G ++ L + A+ LW+ A L+ + + A+ + + +
Sbjct: 350 YVAASFR-VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLV-AFNMLAGRV 407
Query: 835 TVPSI--TELWTLIPTVISAITVLAPAFEILDRKTEIEPDA----PESSESGRIKGRIEF 888
T P + +LW A+ L +IL+ TE PE ++G I F
Sbjct: 408 TQPVLRLAQLWQDFQQTGIALERLG---DILNSPTEPRSAGLAALPE------LRGAITF 458
Query: 889 QNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947
+NI+F Y P PEV L+N +L I+PG + +VGPSG+GKS++ LL R Y P G +L+
Sbjct: 459 ENIRFRYAPDSPEV--LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516
Query: 948 DGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFI 1007
DG + + LR Q+G+V QE +LFS SIR+NI N A ++ +K A HDFI
Sbjct: 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFI 576
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
S LP GY+T VGEKG LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE +I+ +
Sbjct: 577 SELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNM 636
Query: 1068 EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127
+ RT I +AHRL+TV D I+V++KG++ E G H L+A QG+Y
Sbjct: 637 REIC---------RGRTV-IIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLY 685
Query: 1128 SRLYQLQ 1134
+RL+Q Q
Sbjct: 686 ARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 9e-80
Identities = 108/219 (49%), Positives = 151/219 (68%)
Query: 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
+ G + ++V FAYP+RPD L+L+ S ++ G++ ALVG SG GKSTV++L+ FY P
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA 372
G +L+D I + K L + V QEP LF SL DNI G E + A+ A
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKA 127
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+AHSFIS+L Y TE+G++G QLSGGQKQR+AIARA+++NP +L+LDEATSALD+ESE+
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
VQ+AL + RTV++IAHR+ST+ AD I V++ G++
Sbjct: 188 QVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 1e-79
Identities = 131/286 (45%), Positives = 178/286 (62%), Gaps = 16/286 (5%)
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYP-SRPEVTVL 904
I V A L FE+ D ++ D P + + GR+KG +EF ++ F+Y SR V
Sbjct: 296 INQVFMAAPKLEEFFEVEDAVPDVR-DPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVE-- 352
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964
+ S + +PG VA+VGP+GAGKS+++ LL R +DP G ILIDG I+ LR I
Sbjct: 353 -DVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411
Query: 965 GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQ 1024
+V Q+ LF+ SI +NI G A++ E+ +++A HDFI PDGYDTVVGE+G Q
Sbjct: 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084
LSGG++QR+AIAR LLK P I++LDEATSALD E+E + +AL+ L + RT
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDEL---------MKGRT 522
Query: 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130
T I +AHRL+TV N+D I+V D G VVE GS LVA G ++ L
Sbjct: 523 TFI-IAHRLSTVRNADRILVFDNGRVVESGSFDELVA-RGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 271 bits (694), Expect = 4e-79
Identities = 128/276 (46%), Positives = 178/276 (64%), Gaps = 16/276 (5%)
Query: 860 FEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919
F ILD + E + R KG IEF+N+ F YP + EV L N + +I G VAL
Sbjct: 319 FAILDLEQEKDEG---KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVAL 374
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979
VG SG+GKS++ LL RFYD +EG IL+DG +++Y L LR+Q+ LV Q LF+ +I
Sbjct: 375 VGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434
Query: 980 NNICYG-NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038
NNI Y E S +I E ++ A DFI+ + +G DTV+GE G LSGGQ+QRIAIAR
Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARA 494
Query: 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098
LL+ I++LDEATSALD ESER I +AL+ EL T + +AHRL+T+
Sbjct: 495 LLRDSPILILDEATSALDTESERAIQAALD----------ELQKNRTSLVIAHRLSTIEK 544
Query: 1099 SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+D I+V++ GE+VE G+H+ L+A+ GVY++L+++Q
Sbjct: 545 ADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 1e-77
Identities = 122/250 (48%), Positives = 167/250 (66%), Gaps = 14/250 (5%)
Query: 886 IEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I F++++F Y P P + L+N SL+I+PG V +VG SG+GKS++ L+ RFY P G
Sbjct: 1 ITFEHVRFRYKPDGPVI--LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
+L+DG + + LR Q+G+V QE +LF+ SIR+NI + S ++E +K A H
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
DFIS LP+GYDT+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE I+
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ + A RT I +AHRL+TV N+D I+VM+KG +VE GSH L+AE
Sbjct: 179 RNMHDI---------CAGRTV-IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-N 227
Query: 1125 GVYSRLYQLQ 1134
G+Y+ LYQLQ
Sbjct: 228 GLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 5e-77
Identities = 157/445 (35%), Positives = 249/445 (55%), Gaps = 25/445 (5%)
Query: 694 ILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESAS 753
L+A I+ V W AL + + + +I + F A ++ + +S
Sbjct: 71 SLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLL 130
Query: 754 NIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAV 813
N TV F +EE + +LE ++++ K + V+ +++ V + +A+
Sbjct: 131 NFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSAL 190
Query: 814 LIDKKQATFRDGIRAYQI-FSLTVPS--ITELWTLIPTVISAITVLAPAFEILDRKTEIE 870
+++ Q T D + + F L++P + + I ++ + + F++LD + E+
Sbjct: 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKM---FDLLDVEAEVS 247
Query: 871 --PDAPESSESGRIKGRIEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGK 927
PDAP G + F N+ F Y P RP +LN S I G VA+VG SGAGK
Sbjct: 248 DAPDAPPLWPV--RLGAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGK 302
Query: 928 SSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE 987
S++L LL RFYD N G I IDG+ I++ + LR IG+V Q+ +LF+ +I NI YG
Sbjct: 303 STILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP 362
Query: 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
A+ E+ ++ A IHDFI SLP+GYDT VGE+G +LSGG+KQR+AIART+LK P I++
Sbjct: 363 DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107
LDEATSALD +E+ I +AL E+++ T + +AHRL+T+I++D I+V+D
Sbjct: 423 LDEATSALDTHTEQAIQAALR----------EVSAGRTTLVIAHRLSTIIDADEIIVLDN 472
Query: 1108 GEVVEMGSHSTLVAESQGVYSRLYQ 1132
G +VE G+H L+A G+Y+ +++
Sbjct: 473 GRIVERGTHEELLAA-GGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 255 bits (653), Expect = 2e-74
Identities = 118/240 (49%), Positives = 163/240 (67%), Gaps = 4/240 (1%)
Query: 255 GNIDIRDVCFAY-PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
G + +V FAY P RP IL G S +IP GK VA+VG SG GKST++ L+ RFYD ++
Sbjct: 261 GAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G I ID +I+D+ +SLR+ IG V Q+ LF ++ NIK G DA E++ A+ A
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ 377
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
H FI LP+ Y T +G+RG++LSGG+KQR+AIAR I+KNPPIL+LDEATSALD+ +E+
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTM 493
+Q AL GRT ++IAHR+STI++AD I V+++G++ E GTH LL Y ++
Sbjct: 438 IQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWRR 497
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 7e-74
Identities = 111/239 (46%), Positives = 152/239 (63%), Gaps = 3/239 (1%)
Query: 257 IDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I V F Y +PD +IL SL I G++V +VG SG GKST+ L+ RFY P NG
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
+L+D ++ D LR+ +G V QE LF S+ DNI + + E++ A+ +A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
FIS+LP+ Y T +G++G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ GRTVI+IAHR+ST+ NAD I V+E G++ E G+H LL + Y L+ +Q
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 8e-72
Identities = 232/923 (25%), Positives = 425/923 (46%), Gaps = 95/923 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + + F + +R L G + SIP G +VA+VG GCGKS+++S + D G +
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH- 375
++ ++ V Q+ + SL +NI G A +E+ Y + A A
Sbjct: 696 -------------HMKGSVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALL 740
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
+ LP TE+G++GV LSGGQKQR+++ARA+ N I L D+ SA+D+ K +
Sbjct: 741 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800
Query: 436 EAL---ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ-TSDFYNRLF 491
E + E ++ +T IL+ H +S + D+I V+ G+++E G++ LLQ F L
Sbjct: 801 EHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860
Query: 492 TMQNLRPIDDSRTKASTVESTS------TEQQISVVEQLEEPEESKRELSASTGQEEVKG 545
T + + S E + V + + + + +R+LSAS+ +
Sbjct: 861 TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGK--QLQRQLSASSSDSGDQS 918
Query: 546 KRTTIFFRIWFCLNERELLRLV------VGTVAAAFSGISKPLFGFFIITIGVAYYDPQA 599
+ + + E +L+ G V + G FI + + +
Sbjct: 919 RHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNH 978
Query: 600 KQEVG---WYSL-------------------AFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637
+ W SL + +G+ F + G +A
Sbjct: 979 VSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASR 1038
Query: 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIA 697
L + L LR+ +++FE+ +G+L +R + V ++I + + + + +++ A
Sbjct: 1039 VLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGA 1096
Query: 698 TIVSLVVDWRMALVAWAVMPCHFIGGLIQ---AKSAQGFSGDSAAAHTEFISLTSESASN 754
IV L+ + A + P + +Q S++ + + + S +E+
Sbjct: 1097 LIVILLA---TPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLG 1153
Query: 755 IRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVL 814
+ + +F +E + ++ + +++ +++ + + ++ L + + + L + A+
Sbjct: 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN---RWLAVRLECVGNCIVL-FAALF 1209
Query: 815 IDKKQATFRDGIRAYQI-FSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDA 873
+ + G+ + +SL V T + + S + A E L +E E +A
Sbjct: 1210 AVISRHSLSAGLVGLSVSYSLQV---TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEA 1266
Query: 874 PESSESGRI------KGRIEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVALVGPSGAG 926
P + +GR+EF+N Y R ++ VL + ++ I G KV +VG +GAG
Sbjct: 1267 PWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAG 1324
Query: 927 KSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI-CYG 985
KSS+ L R + EG I+IDG I + L LR +I ++ Q+P+LFS S+R N+ +
Sbjct: 1325 KSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS 1384
Query: 986 NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045
S+ E+ + A++ F+S+LPD D E G LS GQ+Q + +AR LL++ I
Sbjct: 1385 Q--YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442
Query: 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105
++LDEAT+A+D E++ +I S + + C T +T+AHRL T+++ ++V+
Sbjct: 1443 LVLDEATAAVDLETDNLIQSTIRT---QFEDC-------TVLTIAHRLNTIMDYTRVIVL 1492
Query: 1106 DKGEVVEMGSHSTLVAESQGVYS 1128
DKGEV E G+ S L+ + YS
Sbjct: 1493 DKGEVAEFGAPSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-71
Identities = 100/224 (44%), Positives = 130/224 (58%), Gaps = 53/224 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ F+YP RP+ VL + SL I+PG KVA+VGPSG+GKS++L LLLR YDP G I
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
LIDG +++ +L LR I V Q+P LFS +IR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
LSGGQ+QRIAIAR LL+ P I++LDEATSALD E+E +I+
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
AL A LA T I +AHRL+T+ ++D I+V+D G
Sbjct: 138 ALRA----------LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-70
Identities = 110/263 (41%), Positives = 159/263 (60%), Gaps = 14/263 (5%)
Query: 868 EIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGK 927
E E A S S R+ G +E +NI F Y S E ++ NFSL ++PG +VALVG SG+GK
Sbjct: 460 EEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGK 518
Query: 928 SSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE 987
S++ L+ Y P G IL DG +E L + + +V Q+ LF ++R+N+ +
Sbjct: 519 STIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP 578
Query: 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
+A++V K A IHD I+S P GYD + E G LSGGQ+QR+ IAR L++ P+I++
Sbjct: 579 TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI 638
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107
LDEATSALD E+E++I L + C T I VAHRL+T+ + D I+V+++
Sbjct: 639 LDEATSALDPETEKIIDDNL-----RRRGC-------TCIIVAHRLSTIRDCDEIIVLER 686
Query: 1108 GEVVEMGSHSTLVAESQGVYSRL 1130
G+VV+ G+H L A G Y+RL
Sbjct: 687 GKVVQRGTHEELWAVG-GAYARL 708
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 5e-70
Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 14/233 (6%)
Query: 884 GRIEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
G IEF+N+ Y RP VL N S I+PG KV +VG +G+GKSS+L L R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
G ILIDG I + L LRS+I ++ Q+P+LFS +IR+N+ E S+ E+ + ++
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
+ +F+ SLP G DTVV E G LS GQ+Q + +AR LL++ I++LDEAT+++D E++ +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
I + T +T+AHRL T+I+SD I+V+DKG VVE S
Sbjct: 178 IQKTIRE---------AFKDCTV-LTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 1e-69
Identities = 94/217 (43%), Positives = 147/217 (67%), Gaps = 1/217 (0%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G I+ R+V F+YP++ L SL+I AG+ VA++G G GKST++ L+A Y P++G
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+L+D +I+ LD LR+NIG V Q+ +LF G+L DNI +G ADDE+I A+ +A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
F+++ P+ ++G+RG LSGGQ+Q +A+ARA++ +PPILLLDE TSA+D SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
+E L + + +T+I+I HR S + D I V++ G++
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 3e-68
Identities = 93/253 (36%), Positives = 150/253 (59%), Gaps = 1/253 (0%)
Query: 245 SKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL 304
S K + I+I ++ + L +L+I AG++ ALVG+SG GKST+++L
Sbjct: 307 SGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNL 366
Query: 305 VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQ 364
+ F P+ G+I ++ ++++DL ++ RK I VSQ P LF G++ +NI + DA DE+
Sbjct: 367 LLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEE 426
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
I A A F+ PD T +G+ G LSGGQ QR+A+ARA++ +LLLDE T+
Sbjct: 427 IIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 425 ALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS 484
LD+E+E+++ +AL+ + +TV++I HR+ +AD I V+++G++ E GTH L +
Sbjct: 486 HLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ 545
Query: 485 DFYNRLFTMQNLR 497
Y L Q R
Sbjct: 546 GLYANLLKQQEGR 558
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 242 bits (621), Expect = 4e-68
Identities = 133/435 (30%), Positives = 235/435 (54%), Gaps = 33/435 (7%)
Query: 63 FATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQ 122
FA F V IA+I + + + +P+IL+ G + ++ ++ + ++ +++ +
Sbjct: 272 FALLFLLV-IAIIG-GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE 329
Query: 123 TISQIKTVFAFVGERSEI-----KSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWA 177
++S ++T+ A E ++ + + L + Q V+
Sbjct: 330 SLSGLETIKALNAE-GRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVS----V 384
Query: 178 LIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQV------FNQAKAAGFEI 231
I+ VG +++ T G ++A VM AL AP Q+ + QAK A +
Sbjct: 385 AIVVVGVYLISDGELTMGGLIACVM---LSGRAL---APLGQLAGLLTRYQQAKTALQSL 438
Query: 232 FQVIQ----RKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKM 287
+++Q R + + + + G I+ R+V FAYP + + L SL+I G+
Sbjct: 439 DELMQLPVERPEGTRFLHRPR----LQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEK 493
Query: 288 VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347
VA++G G GKST++ L+ Y P+ G +L+D ++I+ +D LR+NIG V Q+P LF G
Sbjct: 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553
Query: 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407
+L DNI +G ADDE+I A+ +A F+ + PD ++G+RG LSGGQ+Q +A+A
Sbjct: 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613
Query: 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVE 467
RA++++PPILLLDE TSA+D+ SE+ ++ L+R + G+T++L+ HR S + D I V++
Sbjct: 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMD 673
Query: 468 DGQVTETGTHHSLLQ 482
+G++ G +L+
Sbjct: 674 NGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 5e-67
Identities = 93/228 (40%), Positives = 135/228 (59%), Gaps = 11/228 (4%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
GRIEF+N+ F+YP++ L+N SL I G KVA++G G+GKS++L LL Y P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+L+DG I++ + LR IG V Q+ LF ++R+NI G A + I+ ++ A +
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
DF++ P+G D +GE+G LSGGQ+Q +A+AR LL P I+LLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
L L L +T I + HR + + D I+VMD G +V
Sbjct: 180 KERLRQL---------LGDKTL-IIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (625), Expect = 4e-66
Identities = 265/1104 (24%), Positives = 494/1104 (44%), Gaps = 133/1104 (12%)
Query: 81 SLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEI 140
SL++FL++P+ +I ++M ++ L + + +I + ++ + TV + E+S
Sbjct: 447 SLILFLLIPLQTLI----VRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFE 502
Query: 141 KSFSDCMDKQIIISRGEALIKGVGLGMFQS----VTFCCWALIIWVGAVVVTAKRSTGGE 196
++++ R L+ + S VT + + + +G + A+ T
Sbjct: 503 SRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLS 562
Query: 197 VLAAVMSILFGAIALTYAAPDM--QVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKID 254
+ A + S L P++ QV N A + I +++ + RI ++ L+
Sbjct: 563 LFAVLRSPL-------NMLPNLLSQVVN-ANVSLQRIEELLLSEERIL--AQNPPLQPGA 612
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I I++ F++ S+ + L +L IP G +VA+VG +G GK+++IS
Sbjct: 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS----------- 661
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
++ L+ + +R ++ V Q +F ++ +NI G+ D + E+ + A +
Sbjct: 662 -AMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS-DFESERYWRAIDVTAL 719
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKL 433
+ LP + TE+G+RGV +SGGQKQR+++ARA+ N I + D+ SALD+ + ++
Sbjct: 720 QHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQV 779
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTM 493
++ ++G+T +L+ +++ + D I +V +G + E GT L ++ + +L M
Sbjct: 780 FDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL--M 837
Query: 494 QNLRPIDDS---RTKASTVESTSTEQQISVVEQ-LEEPEESKRELSASTGQEE------- 542
+N +D + T + I V E+ L ++ KR S QEE
Sbjct: 838 ENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIIS 897
Query: 543 --VKGKRTTIFFRIW------FCLNERELLRLVVGTVAAAFSGISKPLF---GFFIITIG 591
V + +W C E+LR+ T + ++ S P GF+I+
Sbjct: 898 WNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYA 957
Query: 592 VAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNE 651
+ +G+ +A + F L + +L A L + +LR
Sbjct: 958 L----------LGFGQVAVTFTNSFWLISSSLH----------AAKRLHDAMLNSILRAP 997
Query: 652 IAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIV----QCISSILIATIVSLVVDWR 707
+ +F N G + +R D + +++ M++ + Q +S+ + VS
Sbjct: 998 MLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS------ 1049
Query: 708 MALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENI 767
+ WA+MP LI +A + ++ E L S + S I A F N
Sbjct: 1050 -TISLWAIMPL-----LILFYAAYLYYQSTS---REVRRLDSVTRSPI--YAQFGEALNG 1098
Query: 768 LQ-----KAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAH----AVALWYTAVLIDKK 818
L KA + K S +I++ + S I V +W TA +
Sbjct: 1099 LSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR 1158
Query: 819 QATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKT---EIEPDAPE 875
+ L + + TL+ V+ + + ++R ++ +A
Sbjct: 1159 NGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATA 1218
Query: 876 SSESGR------IKGRIEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVALVGPSGAGKS 928
E+ R +G I+F+++ Y RP + VL+ S + P KV +VG +GAGKS
Sbjct: 1219 IIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276
Query: 929 SVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA 988
S+L L R + +G I+ID + ++ L LR + ++ Q P+LFS ++R NI +E
Sbjct: 1277 SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE- 1335
Query: 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
++A++ E ++A+I D I P G D V E G S GQ+Q +++AR LL+R I++L
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108
DEAT+++D ++ +I + + SC T + +AHRL T+I+ D I+V+ G
Sbjct: 1396 DEATASVDVRTDSLI---QRTIREEFKSC-------TMLVIAHRLNTIIDCDKILVLSSG 1445
Query: 1109 EVVEMGSHSTLVAESQGVYSRLYQ 1132
+V+E S L++ + R+
Sbjct: 1446 QVLEYDSPQELLSRDTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 242 bits (618), Expect = 3e-65
Identities = 159/524 (30%), Positives = 263/524 (50%), Gaps = 79/524 (15%)
Query: 26 GAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLS--SFATFFSGVLI-AVICCWEVSL 82
G F + K+ + + ++ + IG K F++ ++A+ F G+ I ++ ++L
Sbjct: 145 GQFHDNNPGSKLTSDLDFYLEQVNAGIGTK---FITIFTYASAFLGLYIWSLFKNARLTL 201
Query: 83 LIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKS 142
I V P+I + G K++ T LLY + S+IE+ + I+TV ++ GE++ +K
Sbjct: 202 CITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKK 261
Query: 143 F--SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRST------- 193
F S+ + + I+ ++ + +GM +A W G ++ + S
Sbjct: 262 FNLSEKLYSKYILKAN--FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDF 319
Query: 194 -GGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEK 252
GG V++ ++ +L LT P++ + ++ A ++++I RKP + + GK+L+
Sbjct: 320 HGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD 379
Query: 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
I I ++V F Y +R D I K + ++ GK A VG SGCGKST++ L+ R YDP+
Sbjct: 380 IK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438
Query: 313 NGDILI-DSLNIKDLDLKSLRKNIGAVSQEP-------------SLFT------------ 346
GDI+I DS N+KD++LK R IG VSQ+P SL++
Sbjct: 439 EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYN 498
Query: 347 ---------------------GSLMDNIKVGNMDA-----------DDEQIYNASMMANA 374
G L D + + D ++ + S
Sbjct: 499 EDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
H F+S LPD+Y T +G +LSGGQKQRI+IARAI++NP IL+LDEATS+LD++SE LV
Sbjct: 559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618
Query: 435 QEALE--RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
Q+ + + + R I+IAHR+STI A+ I V+ + + T
Sbjct: 619 QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVD 662
|
Length = 1466 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 4e-65
Identities = 95/244 (38%), Positives = 137/244 (56%), Gaps = 3/244 (1%)
Query: 223 QAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSI 282
AA +F V+ PR +++ V AYP R L+ S ++
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPV-TAAPAPSLEFSGVSVAYPGRRP--ALRPVSFTV 345
Query: 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP 342
P G+ VALVG SG GKST+++L+ F DP+ G I ++ + + D D S R I V Q P
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405
Query: 343 SLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402
LF G++ +NI++ DA D +I A A F++ LP T +G+ G LSGGQ Q
Sbjct: 406 FLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQ 465
Query: 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADM 462
R+A+ARA +++ P+LLLDE T+ LD+E+E V EAL QGRTV+L+ HR++ AD
Sbjct: 466 RLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADR 525
Query: 463 IAVV 466
I V+
Sbjct: 526 IVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 232 bits (595), Expect = 1e-64
Identities = 111/300 (37%), Positives = 163/300 (54%), Gaps = 30/300 (10%)
Query: 845 LIPTVISAITVLAP----------------AFEILDRKTEIEPDAPESS---ESGRIKGR 885
LI V+ + LAP A + LD ++ + PE + R++G
Sbjct: 404 LIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGE 463
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ F YP + E L+N SL I PG KVA++G G+GKS++L LLL Y P EG +
Sbjct: 464 IEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
L+DG I++ + LR IG V Q+P LF ++R+NI G A + EI+ ++ A + +
Sbjct: 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTE 582
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
F+ PDG D +GE+G LSGGQ+Q +A+AR LL+ P I+LLDE TSA+D SE
Sbjct: 583 FVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
L+ LA +T + V HR + + D I+VMD G +V G ++ +
Sbjct: 643 RLKRW---------LAGKTL-VLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEALRK 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 239 bits (610), Expect = 2e-64
Identities = 190/657 (28%), Positives = 309/657 (47%), Gaps = 97/657 (14%)
Query: 528 EESKRELSASTGQE---EVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFG 584
+E ++EL+ E ++K ++ FF + CL L V V A SG + P
Sbjct: 22 DEVEKELNKKGTFELYKKIKTQKIP-FFLPFKCLPASHRKLLGVSFVCATISGGTLP--- 77
Query: 585 FFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLY 644
FF+ GV + + V + L+G+F + + VV K + L+
Sbjct: 78 FFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFL 137
Query: 645 TGVLRNEIAWFEKPQNDAGS-LTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLV 703
V + + + N+ GS LTS + V A I + I S+ L I SL
Sbjct: 138 KSVFYQDGQFHD---NNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194
Query: 704 VDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCH 763
+ R+ L V P +I G+I K + S + +S+ E+ IRTV S+C
Sbjct: 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCG 254
Query: 764 EENILQKAKISLEK-----TKRSSRKESIKYGVIQGFSLCLWNIAHAVALWY-TAVLI-D 816
E+ IL+K +S EK +++ ES+ G+I GF L ++A WY T ++I D
Sbjct: 255 EKTILKKFNLS-EKLYSKYILKANFMESLHIGMINGFIL----ASYAFGFWYGTRIIISD 309
Query: 817 KKQATFRDGIRAYQIFSLTVPSITELWTL---IPTVISAITVLAPA---FEILDRKTEIE 870
+ + S+ + + ++ L +P + + L +EI++RK +E
Sbjct: 310 LSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE 369
Query: 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSV 930
+ + + + +I+F+N++F+Y +R +V + + + + G A VG SG GKS++
Sbjct: 370 NN--DDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTI 427
Query: 931 LALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG---- 985
L L+ R YDP EG II+ D +K+ NL+ RS+IG+V Q+PLLFS SI+NNI Y
Sbjct: 428 LKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSL 487
Query: 986 ----------NEAASEA----------------------------EIVEVSKKAN----- 1002
NE +++ E++E+ K
Sbjct: 488 KDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDS 547
Query: 1003 ----------IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
IHDF+S+LPD Y+T+VG +LSGGQKQRI+IAR +++ P I++LDEAT
Sbjct: 548 EVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
S+LD +SE ++ + L +R T I +AHRL+T+ ++ I V+ E
Sbjct: 608 SSLDNKSEYLVQKTINNLKGNE-------NRIT-IIIAHRLSTIRYANTIFVLSNRE 656
|
Length = 1466 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 4e-64
Identities = 112/326 (34%), Positives = 176/326 (53%), Gaps = 21/326 (6%)
Query: 177 ALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKA-----AGFEI 231
ALI+ VG + V + T G M + F ++ ++ P +
Sbjct: 392 ALILVVGGLRVMEGQLTIG------MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNR 445
Query: 232 FQVIQRKPR-------ISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPA 284
+ R P + ++ + ++ G +++R++ F Y S + +++ FSL++
Sbjct: 446 LDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQP 504
Query: 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSL 344
G+ VALVG SG GKST+ LVA Y P +G+IL D + +++ + L ++ V Q+ L
Sbjct: 505 GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564
Query: 345 FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404
F G++ DN+ + + D + A A H I+ P Y EL + G LSGGQ+QR+
Sbjct: 565 FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624
Query: 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIA 464
IARA+V+NP IL+LDEATSALD E+EK++ + L R +G T I++AHR+STI + D I
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEII 682
Query: 465 VVEDGQVTETGTHHSLLQTSDFYNRL 490
V+E G+V + GTH L Y RL
Sbjct: 683 VLERGKVVQRGTHEELWAVGGAYARL 708
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 4e-64
Identities = 96/265 (36%), Positives = 155/265 (58%), Gaps = 3/265 (1%)
Query: 226 AAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAG 285
A+ I ++ ++KP +++ + ++ + +V F YP +P Q +LKG SL I AG
Sbjct: 309 ASARRINEITEQKPEVTFPTTST-AAADQVSLTLNNVSFTYPDQP-QPVLKGLSLQIKAG 366
Query: 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF 345
+ VAL+G +GCGKST++ L+ R +DP G+IL++ I D +LR+ I VSQ LF
Sbjct: 367 EKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLF 426
Query: 346 TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIA 405
+ +L DN+ + +A DE + + + LG+ G QLSGG+++R+
Sbjct: 427 SATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV 465
IARA++ + P+LLLDE T LD+E+E+ + E L Q +TV++I HR++ + D I V
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV 545
Query: 466 VEDGQVTETGTHHSLLQTSDFYNRL 490
+++GQ+ E GTH LL Y +L
Sbjct: 546 MDNGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 6e-64
Identities = 143/456 (31%), Positives = 241/456 (52%), Gaps = 17/456 (3%)
Query: 60 LSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSM 119
L++F F + A W +S+++ ++ + ++I +R A +
Sbjct: 138 LATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKH 197
Query: 120 IEQTISQIKTVFAF---VGERSEIKSFSD-CMDKQIIISRGEALIKGVGLGMFQSVTFCC 175
+ +IS + V ++ E S +K F++ + Q + AL G+ M +++ C
Sbjct: 198 VSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR-MASTISMMC 256
Query: 176 WALIIWVGAVVVTAKRSTGGEVLAAV--MSILFGAIALTYAAPDMQVFNQAKAAGFEIFQ 233
I+ +G V+V + GEV+A + ++L G + +AK F F
Sbjct: 257 ---ILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDF--FD 311
Query: 234 VIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGS 293
+ + + EL + G ++ R + F + + + S AG+ VA+VG
Sbjct: 312 LEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGP 369
Query: 294 SGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353
+G GK+T+I+L+ R YDP+ G ILID ++I + +SLRK+I V Q+ LF S+ +NI
Sbjct: 370 TGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429
Query: 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413
++G A DE++Y A+ A AH FI + + Y T +G+RG +LSGG++QR+AIARAI+KN
Sbjct: 430 RLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489
Query: 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
PIL+LDEATSALD E+E V+ A++ + RT +IAHR+ST+ NAD++ ++ G++ E
Sbjct: 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549
Query: 474 TGTHHSLLQTSDFYNRLFTMQNL---RPIDDSRTKA 506
G+ L+Q + +L L +P KA
Sbjct: 550 KGSFQELIQKDGRFYKLLRRSGLLTNQPATKPLRKA 585
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 2e-62
Identities = 79/223 (35%), Positives = 134/223 (60%), Gaps = 4/223 (1%)
Query: 255 GNIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
G+I+ ++V Y RP+ +LK S SI G+ V +VG +G GKS+++ + R + S+
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G ILID ++I + L LR I + Q+P LF+G++ N+ DE+++ A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVG 117
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
F+ LP T + + G LS GQ+Q + +ARA+++ IL+LDEAT+++D E++ L
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
+Q+ + A + TV+ IAHR+ TI+++D I V++ G+V E +
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-62
Identities = 151/452 (33%), Positives = 244/452 (53%), Gaps = 39/452 (8%)
Query: 696 IATIVSLVV--------DWRMALVAWAVMPCH-FIGGLIQAKSAQGFSGDSAAAHTEFIS 746
+AT V+L + DWR+++V + + I L+ ++ G + H F
Sbjct: 138 LATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVF-K 196
Query: 747 LTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLC--LWNIAH 804
S+S SN+ V S+ N ++ +L++ ++ S +Y V+ ++L L +A
Sbjct: 197 HVSDSISNVSVVHSY----NRIEAETSALKQ--FTNNLLSAQYPVLDWWALASGLNRMAS 250
Query: 805 AVA----LWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAF 860
++ L VL+ K + + + I +L + + ++ I + A L F
Sbjct: 251 TISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFF 310
Query: 861 EILD--RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVA 918
++ D + E DAPE +KG +EF++I F + + + + + S + + G VA
Sbjct: 311 DLEDSVFQREEPADAPELPN---VKGAVEFRHITFEFANSSQG--VFDVSFEAKAGQTVA 365
Query: 919 LVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI 978
+VGP+GAGK++++ LL R YDP G ILIDG I LR I V Q+ LF+ SI
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425
Query: 979 RNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038
R NI G E A++ E+ E +K A HDFI +GYDT+VGE+G +LSGG++QR+AIAR
Sbjct: 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485
Query: 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098
+LK I++LDEATSALD E+E + +A++AL +RTT I +AHRL+TV N
Sbjct: 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR---------KNRTTFI-IAHRLSTVRN 535
Query: 1099 SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130
+D+++ +D+G ++E GS L+ + Y L
Sbjct: 536 ADLVLFLDQGRLIEKGSFQELIQKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 4e-62
Identities = 103/272 (37%), Positives = 157/272 (57%), Gaps = 15/272 (5%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
EI ++K E+ P +S + + + N+ F YP +P+ VL SLQI+ G KVAL+
Sbjct: 316 EITEQKPEVT--FPTTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEKVALL 372
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G +G GKS++L LL R +DP +G IL++G+ I +Y+ LR I +V Q LFS ++R+
Sbjct: 373 GRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432
Query: 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
N+ AS+ ++EV ++ + + G + +GE G QLSGG+++R+ IAR LL
Sbjct: 433 NLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
++LLDE T LDAE+ER I+ L E A T + + HRL + D
Sbjct: 492 HDAPLLLLDEPTEGLDAETERQILELLA----------EHAQNKTVLMITHRLTGLEQFD 541
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132
I VMD G+++E G+H L+A+ QG Y +L Q
Sbjct: 542 RICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 4e-62
Identities = 99/273 (36%), Positives = 159/273 (58%), Gaps = 15/273 (5%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
+ILD+K E+ +++ +G+ +E +N+ F YP + L NF+L + G KVA++
Sbjct: 315 DILDQKPEVTFPDEQTATTGQA---LELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAIL 370
Query: 921 GPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980
G SG+GKS++L LL +DP +G I ++G I + + LR I ++ Q LFS ++R+
Sbjct: 371 GRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRD 430
Query: 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
N+ N AS+ E+ ++ + + S PDG +T +GE G +LSGG+++R+A+AR LL
Sbjct: 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL 490
Query: 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSD 1100
+ LLDE T LD +ER +++ L E A T + V HRL + D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLF----------EHAEGKTLLMVTHRLRGLERMD 540
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133
I+V+D G+++E G+H+ L+A G Y RLYQL
Sbjct: 541 RIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-61
Identities = 106/276 (38%), Positives = 158/276 (57%), Gaps = 14/276 (5%)
Query: 860 FEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919
F +L+ ++ + I +N+ F YP L++ +L I+ G AL
Sbjct: 295 FTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTAL 352
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979
VG SGAGKS++L LLL F P +G I ++G +++ + R QI V Q P LF+ +IR
Sbjct: 353 VGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412
Query: 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
NI AS+ EI+ +A + +F+ PDG DTV+GE G LSGGQ QR+A+AR L
Sbjct: 413 ENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARAL 471
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099
L +++LLDE T+ LDAE+E++I+ AL+ ELA + T + + HRL ++
Sbjct: 472 LSPASLLLLDEPTAHLDAETEQIILQALQ----------ELAKQKTVLVITHRLEDAADA 521
Query: 1100 DVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135
D IVV+D G +VE G+H L +E QG+Y+ L + Q
Sbjct: 522 DRIVVLDNGRLVEQGTHEEL-SEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 5e-61
Identities = 102/315 (32%), Positives = 177/315 (56%), Gaps = 5/315 (1%)
Query: 177 ALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPD-MQVFNQAKAAGFEIFQVI 235
L++W+ A V A A++ I A AP Q Q A+ + ++
Sbjct: 259 GLLLWMAAQVG-AGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDIL 317
Query: 236 QRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSG 295
+KP +++ ++ +++R+V F YP + LK F+L++ G+ VA++G SG
Sbjct: 318 DQKPEVTFP--DEQTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSG 374
Query: 296 CGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV 355
GKST++ L+A +DP G I ++ + I LD ++LR+ I ++Q LF+G+L DN+++
Sbjct: 375 SGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRL 434
Query: 356 GNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415
N DA DE+++ A + PD +T LG+ G +LSGG+++R+A+ARA++ + P
Sbjct: 435 ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494
Query: 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475
+ LLDE T LD +E+ V L +G+T++++ HR+ + D I V+++G++ E G
Sbjct: 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEG 554
Query: 476 THHSLLQTSDFYNRL 490
TH LL + Y RL
Sbjct: 555 THAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 6e-61
Identities = 165/612 (26%), Positives = 286/612 (46%), Gaps = 99/612 (16%)
Query: 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
YSL ++ + + TL++Y+ V+GEK ++R L+ +L EI++F++ ++ G L
Sbjct: 868 YSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLL 927
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFI---- 721
++ I D ++K + + + + I L++ ++S + +VA + +FI
Sbjct: 928 SAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF---YFCPIVAAVLTGTYFIFMRV 984
Query: 722 ---------------GGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEE- 765
+ Q + ++ D L E+ N+ TV + E+
Sbjct: 985 FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSF-LIQEAFYNMNTVIIYGLEDY 1043
Query: 766 --NILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFR 823
N+++KA ++ + + +++++ ++ GFS ++ A W+ + LI +
Sbjct: 1044 FCNLIEKA---IDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVD 1100
Query: 824 DGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE---PDAPESSESG 880
D +++ F T +L +L +A + ++ RK+ I+
Sbjct: 1101 DFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKN 1160
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD- 939
IKG+IE ++ F Y SRP V + + + + A+VG +G+GKS+V++LL+RFYD
Sbjct: 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220
Query: 940 PNEGIILIDG----------------------KGIKEY---------------------- 955
N+ I+ K + E+
Sbjct: 1221 KNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKIL 1280
Query: 956 ---------NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
NL+ LR+ +V QEP+LF+ SI NI +G E A+ ++ K A I +F
Sbjct: 1281 LDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
I SLP+ YDT VG G LSGGQKQRIAIAR LL+ P I+LLDEATS+LD+ SE++I
Sbjct: 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE-----VVEMGSHSTLVA 1121
+ + K+ T IT+AHR+A++ SD IVV + + V G+H L++
Sbjct: 1401 IVDIKDKADK--------TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452
Query: 1122 ESQGVYSRLYQL 1133
GVY + +L
Sbjct: 1453 VQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 1e-60
Identities = 111/305 (36%), Positives = 179/305 (58%), Gaps = 20/305 (6%)
Query: 831 IFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQN 890
F ++T+L + ++++ I + A IL+ E++ ++ G++ G IE
Sbjct: 400 AFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KTDPGKLSGAIEVDR 456
Query: 891 IKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
+ F Y P P +L++ SLQIEPG VA+VGPSG+GKS++L LLL F P G + DG
Sbjct: 457 VTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514
Query: 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISS 1009
+ + +++ +R Q+G+V Q L S SI NI G + E E ++ A + + I +
Sbjct: 515 QDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD-EAWEAARMAGLAEDIRA 573
Query: 1010 LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069
+P G TV+ E G LSGGQ+QR+ IAR L+++P I+L DEATSALD ++ ++ +LE
Sbjct: 574 MPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633
Query: 1070 LNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
L T+I +AHRL+T+ N+D I V+D G VV+ G++ L+A +G++++
Sbjct: 634 LK------------VTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQ 680
Query: 1130 LYQLQ 1134
L + Q
Sbjct: 681 LARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 1e-60
Identities = 155/479 (32%), Positives = 247/479 (51%), Gaps = 29/479 (6%)
Query: 27 AFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICC-WEVSLLIF 85
AFDT G++I+ V++ VIRD + L S A +L+A+ W ++L+
Sbjct: 115 AFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRS-AALIGAMLVAMFSLDWRMALVAI 172
Query: 86 LVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAF-----VGERSEI 140
++ P +LV+ Y + + YL++ + I+ + + F GER
Sbjct: 173 MIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGE 232
Query: 141 KSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAA 200
S S M + + R + + L +F ++ C L++ G +A + VL A
Sbjct: 233 ASRSHYMARMQTL-RLDGFLLRPLLSLFSALILC--GLLMLFG---FSASGTIEVGVLYA 286
Query: 201 VMSILFGA-----IALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDG 255
+S L G I LT +Q QA AG +F+++ PR Y + + L+ G
Sbjct: 287 FISYL-GRLNEPLIELTTQQSMLQ---QAVVAGERVFELMDG-PRQQYGNDDRPLQS--G 339
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
IDI +V FAY R D L+L+ +LS+P+ VALVG +G GKST+ SL+ +Y + G+
Sbjct: 340 RIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
I +D + L LR+ + V Q+P + + + N+ +G D +EQ++ A
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLA 456
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
LPD T LG++G LS GQKQ +A+AR +V+ P IL+LDEAT+ +DS +E+ +Q
Sbjct: 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ 516
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+AL + T+++IAHR+STIV AD I V+ GQ E GTH LL Y +++ +Q
Sbjct: 517 QALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 4e-60
Identities = 97/257 (37%), Positives = 134/257 (52%), Gaps = 20/257 (7%)
Query: 852 AITVLAPAFEILDRKTEIEP---DAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFS 908
+ F +LD + +EF + YP R L S
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAPVTAAPAP-----SLEFSGVSVAYPGRRPA--LRPVS 342
Query: 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968
+ PG +VALVGPSGAGKS++L LLL F DP EG I ++G + + + R QI V
Sbjct: 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402
Query: 969 QEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028
Q P LF+ +I NI AS+AEI E ++A + +F+++LP G DT +GE G LSGG
Sbjct: 403 QHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGG 462
Query: 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT 1088
Q QR+A+AR L+ ++LLDE T+ LDAE+E ++ AL LA T +
Sbjct: 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALR----------ALAQGRTVLL 512
Query: 1089 VAHRLATVINSDVIVVM 1105
V HRLA +D IVV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 8e-58
Identities = 96/241 (39%), Positives = 148/241 (61%), Gaps = 3/241 (1%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+++IR F YP D L+ + ++ G+M+ + G +G GKST++SL+ R +D S GD
Sbjct: 315 DVNIRQ--FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD 371
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
I + + L L S R + VSQ P LF+ ++ +NI +G DA ++I + + +A+ H
Sbjct: 372 IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVH 431
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
I +LP Y TE+G+RGV LSGGQKQRI+IARA++ N IL+LD+A SA+D +E +
Sbjct: 432 DDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495
L + +GRTVI+ AHR+S + A I V++ G + + G H L Q S +Y ++ Q
Sbjct: 492 HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551
Query: 496 L 496
L
Sbjct: 552 L 552
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 3e-57
Identities = 79/220 (35%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
+ + + ++PAG+ +ALVG SG GK+++++ + F P G + I+ + +++LD +S
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPES 420
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
RK++ V Q P L G+L DN+ +GN DA DEQ+ A A F+ LP T +G
Sbjct: 421 WRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILI 450
+ LS GQ QR+A+ARA+++ +LLLDE T++LD+ SE+LV +AL A + +T +++
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 451 AHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490
H++ + D I V++DGQ+ + G + L Q + L
Sbjct: 541 THQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 9e-57
Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 12/225 (5%)
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967
+ + G ++ALVGPSGAGK+S+L LL F P +G + I+G ++E + R + V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 968 QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027
Q P L ++R+N+ GN AS+ ++ + + A + +F+ LP G DT +G++ LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQI 1087
GQ QR+A+AR LL+ ++LLDE T++LDA SE++++ AL + R T +
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN----------AASRRQTTL 538
Query: 1088 TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132
V H+L + D I VM G++V+ G ++ L G+++ L
Sbjct: 539 MVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 8e-56
Identities = 100/250 (40%), Positives = 147/250 (58%), Gaps = 16/250 (6%)
Query: 890 NIK-FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
NI+ F YP + L N + ++PG + + GP+G+GKS++L+L+ R +D +EG I
Sbjct: 317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFH 375
Query: 949 GKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS 1008
+ + L RS++ +V Q P LFS ++ NNI G A++ EI V++ A++HD I
Sbjct: 376 DIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDIL 435
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LP GYDT VGE+G LSGGQKQRI+IAR LL I++LD+A SA+D +E I+ L
Sbjct: 436 RLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL- 494
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYS 1128
GE RT I+ AHRL+ + + I+VM G + + G+H L +S G Y
Sbjct: 495 ------RQWGE--GRTVIIS-AHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYR 544
Query: 1129 RLY---QLQA 1135
+Y QL+A
Sbjct: 545 DMYRYQQLEA 554
|
Length = 569 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 2e-55
Identities = 129/425 (30%), Positives = 220/425 (51%), Gaps = 30/425 (7%)
Query: 82 LLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGER---S 138
LL L +P+ VI + + N ++ + + S I + ++ I+T+ + E S
Sbjct: 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYS 358
Query: 139 EIKS-FSDCMDKQ---IIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTG 194
+I S F D ++K +G+ IK + +V I+W GA +V + T
Sbjct: 359 KIDSEFGDYLNKSFKYQKADQGQQAIK-AVTKLILNVV------ILWTGAYLVMRGKLTL 411
Query: 195 GEVLAAVMSILFGAIALTYAAPDMQVFN------QAKAAGFEIFQVIQRKPRISYSSKGK 248
G+++ F A+ + P + N A+ A + +V K
Sbjct: 412 GQLIT------FNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRT 465
Query: 249 ELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308
EL ++G+I I DV ++Y + IL SL+I +VG SG GKST+ L+ F
Sbjct: 466 ELNNLNGDIVINDVSYSYGYGSN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523
Query: 309 YDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD-ADDEQIYN 367
+ +G+IL++ ++KD+D +LR+ I + QEP +F+GS+++N+ +G + ++I+
Sbjct: 524 FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWA 583
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A +A I +P Y TEL + G +SGGQKQRIA+ARA++ + +L+LDE+TS LD
Sbjct: 584 ACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
Query: 428 SESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
+ +EK + L +Q +T+I +AHR+S +D I V++ G++ E G+H LL + FY
Sbjct: 644 TITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702
Query: 488 NRLFT 492
L
Sbjct: 703 ASLIH 707
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 4e-55
Identities = 101/240 (42%), Positives = 146/240 (60%), Gaps = 6/240 (2%)
Query: 252 KIDGNIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
K+ G I++ V F Y RPD LIL SL I G+ VA+VG SG GKST++ L+ F
Sbjct: 447 KLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASM 370
P +G + D ++ LD++++R+ +G V Q L +GS+ +NI G DE + A+
Sbjct: 505 PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE-AWEAAR 563
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
MA I +P T + + G LSGGQ+QR+ IARA+V+ P ILL DEATSALD+ +
Sbjct: 564 MAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
Query: 431 EKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490
+ +V E+LER T I+IAHR+STI NAD I V++ G+V + GT+ L+ + +L
Sbjct: 624 QAIVSESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 6e-54
Identities = 147/569 (25%), Positives = 261/569 (45%), Gaps = 20/569 (3%)
Query: 565 RLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA-KQEVGWYSLAFSLVGLFSLFTHTL 623
+L+V V AA + G + + + Y P +G S+ + + +
Sbjct: 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYI 215
Query: 624 QHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683
Q + V+G++ ++ + + +++F + G + SR +S++ A+ S
Sbjct: 216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRR--TGEIVSRFTDASSIIDALASTI 273
Query: 684 MSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTE 743
+S+ + + ++I + + + + L++ +P + + ++ ++ + D+ A+
Sbjct: 274 LSLFLD-MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAV 332
Query: 744 FISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803
S E + I T+ S E K S K Q I
Sbjct: 333 LNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL 392
Query: 804 HAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEIL 863
+ V LW A L+ + + T I + S + + + L P + +A E+
Sbjct: 393 NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY 452
Query: 864 DRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
+E + + +E + G I ++ ++Y + L++ SL I+ K +VG S
Sbjct: 453 LVDSEFI-NKKKRTELNNLNGDIVINDVSYSYGYGSNI--LSDISLTIKMNSKTTIVGMS 509
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
G+GKS++ LL+ F+ G IL++G +K+ + LR I + QEP +FS SI N+
Sbjct: 510 GSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL 569
Query: 984 YGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042
G E S+ EI + A I D I ++P GY T + E+G +SGGQKQRIA+AR LL
Sbjct: 570 LGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629
Query: 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102
+++LDE+TS LD +E+ IV+ L L K T I VAHRL+ SD I
Sbjct: 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDK-----------TIIFVAHRLSVAKQSDKI 678
Query: 1103 VVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
+V+D G+++E GSH L+ + G Y+ L
Sbjct: 679 IVLDHGKIIEQGSHDELLDRN-GFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 3e-52
Identities = 101/277 (36%), Positives = 164/277 (59%), Gaps = 22/277 (7%)
Query: 860 FEILD--RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKV 917
FE++D R+ D P S GRI+ N+ F Y R + VL N +L + V
Sbjct: 319 FELMDGPRQQYGNDDRPLQS------GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFV 370
Query: 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS 977
ALVG +G+GKS++ +LL+ +Y EG I +DG+ + + LR + +VQQ+P++ + +
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADT 430
Query: 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037
N+ G + SE ++ + + + + SLPDG T +GE+G LS GQKQ +A+AR
Sbjct: 431 FLANVTLGRDI-SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489
Query: 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097
L++ P I++LDEAT+ +D+ +E+ I AL A+ TT + +AHRL+T++
Sbjct: 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----------HTTLVVIAHRLSTIV 539
Query: 1098 NSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+D I+V+ +G+ VE G+H L+A +QG Y ++YQLQ
Sbjct: 540 EADTILVLHRGQAVEQGTHQQLLA-AQGRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 5e-52
Identities = 134/552 (24%), Positives = 245/552 (44%), Gaps = 44/552 (7%)
Query: 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGV-AYYDPQAKQ--EVGWYSLAFSLVG 614
L + RL + + A + G + +GV A+ +A + V + S+A V
Sbjct: 7 LLKPRRRRLALAVLLGALAL------GSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVR 60
Query: 615 LFSLFTHTLQHYFFGVVGE----KAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIV 670
F + + Y +VG +++ LR +Y + R +A + + G L R+
Sbjct: 61 AFGI-GRAVFRYLERLVGHDAALRSLGALRVRVYERLARQALAGRRRLRR--GDLLGRLG 117
Query: 671 SDTSMVKAIISDRMSVIVQCISS---ILIATIVSLVVDWRMALVAWAVMPCH-FIGGLIQ 726
+D ++ + + VIV + A V+ AL+ A + F+ L+
Sbjct: 118 ADVDALQDLY---VRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVS 174
Query: 727 AKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKES 786
++A+ A E + +++ + + L + + + + R+ R+ +
Sbjct: 175 LRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAALAQVEEADRELTRAERRAA 234
Query: 787 IKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLI 846
+ +L +A +A+ A R + L + E + +
Sbjct: 235 AATALGAALTL----LAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAAL 290
Query: 847 PTVISAITVLAPA----FEILDRKTEI-EPDAPESSESGRIKGRIEFQNIKFNYPSRPEV 901
P +T + A E+LD + E AP + G K +E +++ YP P V
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPV 350
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
L+ SL + PG +VA++GPSG+GKS++LA L DP +G + +DG + + +R
Sbjct: 351 --LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021
++ + Q+ LF ++R N+ A++ E+ ++ + D++ +LPDG DTV+GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA 1081
G +LSGG++QR+A+AR LL I+LLDE T LDAE+ ++ L A L+
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA---------LS 519
Query: 1082 SRTTQITVAHRL 1093
RT + + H L
Sbjct: 520 GRTV-VLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 2e-51
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 44/216 (20%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ +V F YP + +L+ S SI G+ +A++G SG GKST+ L+ P++G +
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+D +I D L ++G + Q+ LF+GS+ +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
LSGGQ+QR+ +ARA+ NP IL+LDE S LD E E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 437 ALERA-MQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
A+ G T I+IAHR T+ +AD I V+EDG+V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 8e-49
Identities = 160/552 (28%), Positives = 240/552 (43%), Gaps = 99/552 (17%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLG---------HFLSSF------ATFFS 68
E+ FD D ++ S+H++ RD K G HF+ F + +F
Sbjct: 913 EISFFDQDKHAPGLL---SAHIN--RDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFC 967
Query: 69 GVLIAVIC-CWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSE------ATSMIE 121
++ AV+ + + + +F + + K +N T Y S+ + +I+
Sbjct: 968 PIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEIN-QPGTVFAYNSDDEIFKDPSFLIQ 1026
Query: 122 QTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIW 181
+ + TV + E +D + + L+ + G QS + W
Sbjct: 1027 EAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYW 1086
Query: 182 VGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAA--GFE-IFQVIQRK 238
G+ ++ + + ++ + LF +YA M + ++ A FE + +I RK
Sbjct: 1087 FGSFLIRRGTILVDDFMKSLFTFLFTG---SYAGKLMSLKGDSENAKLSFEKYYPLIIRK 1143
Query: 239 PRISYSSKG----KELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSS 294
I G K I G I+I DV F Y SRP+ I K + S + K A+VG +
Sbjct: 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203
Query: 295 GCGKSTVISLVARFYDPSNGDILI-------DSLNIKD---------------------- 325
G GKSTV+SL+ RFYD N ++ D N +D
Sbjct: 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKE 1263
Query: 326 -----------------LD--------LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA 360
LD LK LR VSQEP LF S+ +NIK G DA
Sbjct: 1264 GGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323
Query: 361 DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
E + A A FI LP++Y T +G G LSGGQKQRIAIARA+++ P ILLLD
Sbjct: 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383
Query: 421 EATSALDSESEKLVQEALE--RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTET---- 474
EATS+LDS SEKL+++ + + +T+I IAHR+++I +D I V + T +
Sbjct: 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443
Query: 475 -GTHHSLLQTSD 485
GTH LL D
Sbjct: 1444 HGTHEELLSVQD 1455
|
Length = 1466 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 181 bits (462), Expect = 1e-48
Identities = 102/310 (32%), Positives = 175/310 (56%), Gaps = 13/310 (4%)
Query: 178 LIIWVGAVVVTAKRSTGGEVLAAVMSILFG-AIA-LTYAAPDMQVFNQAKAAGFEIFQVI 235
L++ +GA + T G ++A SIL G A+A + A + F+ A+ A + +++
Sbjct: 241 LVLGLGAYLAIDGEITPGMMIAG--SILVGRALAPIDGAIGGWKQFSGARQAYKRLNELL 298
Query: 236 QRKPRISYSSKGK--ELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGS 293
+Y S+ L + +G++ + +V P + L+G S S+ AG+ +A++G
Sbjct: 299 -----ANYPSRDPAMPLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGP 352
Query: 294 SGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353
SG GKST+ L+ + P++G + +D ++K D ++ K+IG + Q+ LF G++ +NI
Sbjct: 353 SGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI 412
Query: 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413
+AD E+I A+ +A H I +LPD Y T +G G LSGGQ+QRIA+ARA+ +
Sbjct: 413 ARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472
Query: 414 PPILLLDEATSALDSESEKLVQEALERA-MQGRTVILIAHRMSTIVNADMIAVVEDGQVT 472
P +++LDE S LD E E+ + A++ +G TV++I HR S + D I V++DG++
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532
Query: 473 ETGTHHSLLQ 482
G +L
Sbjct: 533 RFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 6e-48
Identities = 94/295 (31%), Positives = 153/295 (51%), Gaps = 25/295 (8%)
Query: 177 ALIIWVGAVVVTAKRSTGGE----------VLAAVMSILFGA----IALTYAAPDMQVFN 222
AL + + V GG LA ++ + A AL AA Q
Sbjct: 242 ALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAA---QQLT 298
Query: 223 QAKAAGFEIFQVIQRKPRISYSS----KGKELEKIDGNIDIRDVCFAYPSRPDQLILKGF 278
+ +AA I +V+ ++ S L K +++RD+ YP +L G
Sbjct: 299 RVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPT--LELRDLSAGYP--GAPPVLDGV 354
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338
SL +P G+ VA++G SG GKST+++ +A DP G++ +D + + LD +R+ +
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414
Query: 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398
+Q+ LF ++ +N+++ DA DE+++ A ++ LPD T LG+ G +LSG
Sbjct: 415 AQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHR 453
G++QR+A+ARA++ + PILLLDE T LD+E+ + E L A+ GRTV+LI H
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 9e-48
Identities = 86/233 (36%), Positives = 128/233 (54%), Gaps = 32/233 (13%)
Query: 884 GRIEFQNIKFNY-PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
G IE +N+ Y P P V L N S +++ G K+ +VG +GAGKS+++ L RF + E
Sbjct: 5 GEIEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
G I IDG I L LRS + ++ Q+P LFS +IR+N+ +E S+ EI +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR--- 118
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
V E G LS GQ+Q + +AR LLKRP +++LDEAT+++D ++ +
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
I + E + +T +T+AHRL T+I+ D I+VMD GEV E
Sbjct: 164 I----------QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 9e-47
Identities = 101/313 (32%), Positives = 172/313 (54%), Gaps = 17/313 (5%)
Query: 178 LIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQV------FNQAKAAGFEI 231
++ +GA +V T G ++A SIL G AL AP F A+ + +
Sbjct: 259 AVLGLGAWLVIKGEITPGMMIAG--SILSGR-AL---APIDLAIANWKQFVAARQSYKRL 312
Query: 232 FQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALV 291
+++ P +++ L G + + + A P + + ILKG S ++ AG+ + ++
Sbjct: 313 NELLAELP---AAAERMPLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGII 368
Query: 292 GSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351
G SG GKST+ L+ + P++G + +D +++ D + L ++IG + Q+ LF G++ +
Sbjct: 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428
Query: 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411
NI +AD E++ A+ +A H I +LP Y T +G+ G LSGGQ+QRIA+ARA+
Sbjct: 429 NIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488
Query: 412 KNPPILLLDEATSALDSESEKLVQEALERA-MQGRTVILIAHRMSTIVNADMIAVVEDGQ 470
+P +++LDE S LDSE E + A+ A +G TV++IAHR S + + D I V++DG+
Sbjct: 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGR 548
Query: 471 VTETGTHHSLLQT 483
+ G +L
Sbjct: 549 IAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-45
Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 22/224 (9%)
Query: 254 DGNIDIRDVCFAY-PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
G I++ ++ Y P P +LK S + AG+ + +VG +G GKST+I + RF +
Sbjct: 4 HGEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA 372
G I ID ++I + L+ LR ++ + Q+P+LF+G++ N+ + DE+IY A
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGA---- 116
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+ + G+ LS GQ+Q + +ARA++K P +L+LDEAT+++D ++
Sbjct: 117 --------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
L+Q+ + T++ IAHR+ TI++ D I V++ G+V E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 9e-45
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 41/219 (18%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ I +V F+YP + +Q +LK SL + G+ +AL+G SG GKST++ L+ P G+I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+D + + DL+ K+L I ++Q P LF +L +N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
G + SGG++QR+A+AR ++++ PI+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475
+ ++ +T+I I H ++ I + D I +E+G++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 5e-44
Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 27/234 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----P 311
I++RD+ Y + LK SL IP G++ AL+G SGCGKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 312 SNGDILIDSLNIKDLDLK--SLRKNIGAVSQEPSLFTGSLMDNIKVG-------NMDADD 362
G++L+D +I DLD+ LR+ +G V Q+P+ F GS+ DN+ G + D
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
E++ A A L D+ L G LSGGQ+QR+ +ARA+ P +LLLDE
Sbjct: 118 ERVEEALRKA-------ALWDEVKDRLHALG--LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
TSALD S ++E + + T++++ H M AD A + +G++ E G
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-43
Identities = 79/245 (32%), Positives = 129/245 (52%), Gaps = 10/245 (4%)
Query: 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS 929
P + +G + +N+ P + L S ++ G +A++GPSG+GKS+
Sbjct: 301 YPSRDPAMPLPEPEGHLSVENVTI-VPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKST 359
Query: 930 VLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA 989
+ L++ + P G + +DG +K+++ IG + Q+ LF ++ NI E A
Sbjct: 360 LARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENA 419
Query: 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+I+E +K A +H+ I LPDGYDTV+G G LSGGQ+QRIA+AR L P +++LD
Sbjct: 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
E S LD E E+ + +A++AL A T + + HR + + D I+V+ G
Sbjct: 480 EPNSNLDEEGEQALANAIKALK---------ARGITVVVITHRPSLLGCVDKILVLQDGR 530
Query: 1110 VVEMG 1114
+ G
Sbjct: 531 IARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 1e-43
Identities = 97/273 (35%), Positives = 156/273 (57%), Gaps = 20/273 (7%)
Query: 867 TEIEPDAPESSESGR------IKGRIEFQNIKFNYPSRPEVT-VLNNFSLQIEPGLKVAL 919
++ +AP E+ R G I+F+++ Y RPE+ VL+ S +I P KV +
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGI 1270
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979
VG +GAGKSS+L L R + G ILIDG I ++ L LR +G++ Q P+LFS ++R
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
N+ NE ++A++ E ++A++ D I G D V E G S GQ+Q +++AR L
Sbjct: 1331 FNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARAL 1389
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099
L+R I++LDEAT+A+D ++ +I + + + SC T + +AHRL T+I+
Sbjct: 1390 LRRSKILVLDEATAAVDVRTDALI---QKTIREEFKSC-------TMLIIAHRLNTIIDC 1439
Query: 1100 DVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132
D I+V+D G VVE + L++ +S++ Q
Sbjct: 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 3e-43
Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 10/260 (3%)
Query: 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS 929
P A E +G + + + P + + L S ++ G + ++GPSG+GKS+
Sbjct: 319 LPAAAERMPLPAPQGALSVERLTAAPPGQKKPI-LKGISFALQAGEALGIIGPSGSGKST 377
Query: 930 VLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA 989
+ LL+ + P G + +DG +++++ +L IG + Q+ LF +I NI E A
Sbjct: 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEA 437
Query: 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+++E ++ A +H+ I LP GYDT +GE G LSGGQ+QRIA+AR L P +++LD
Sbjct: 438 DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLD 497
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
E S LD+E E + +A+ A K+ T + +AHR + + + D I+V+ G
Sbjct: 498 EPNSNLDSEGEAALAAAILAA--KARGG-------TVVVIAHRPSALASVDKILVLQDGR 548
Query: 1110 VVEMGSHSTLVAESQGVYSR 1129
+ G ++A+ R
Sbjct: 549 IAAFGPREEVLAKVLRPPPR 568
|
Length = 580 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 14/218 (6%)
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
++++ F+YP + L SL+I G+ V +VG +G GKST++ L+ P++G++L+
Sbjct: 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIKVG--NMDADDEQIYNASMMANA 374
D ++ L LK LR+ +G V Q P F ++ + + G N+ +E+I A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ L D+ S LSGGQKQR+AIA + +P ILLLDE T+ LD + +
Sbjct: 121 LVGLEGLRDR-SPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173
Query: 435 QEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470
E L++ +G+T+I++ H + ++ AD + V+EDG+
Sbjct: 174 LELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 3e-43
Identities = 74/220 (33%), Positives = 118/220 (53%), Gaps = 48/220 (21%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++++V Y + +L SL+I AG++VAL+G SG GKST++ +A +P +G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 317 LIDSLNIKDLD--LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMAN 373
LID ++ DL+ L LR+ IG V Q+ +LF ++++NI +G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 434 VQEALE--RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470
V+ L+ +A G TV+L+ H + AD + V+ DG+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 80/245 (32%), Positives = 115/245 (46%), Gaps = 37/245 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----P 940
IE +++ Y + L + SL I G AL+GPSG GKS++L LL R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 941 NEGIILIDGKGIKEYNLRR--LRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
+EG +L+DGK I + ++ LR ++G+V Q+P F SI +N+ YG
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 993 EIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
E VE + +KA + D + LSGGQ+QR+ +AR L P ++LLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
TSALD S I + EL T + V H + +D + G +
Sbjct: 169 TSALDPISTAKIEELIA----------ELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
Query: 1111 VEMGS 1115
VE G
Sbjct: 219 VEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 7e-42
Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 20/219 (9%)
Query: 257 IDIRDVCFAYPSRPDQ--LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I + D F + S + LK +L +P G++VA+VG G GKS+++S + + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+ S+ +I VSQEP + G++ +NI G DE+ Y + A A
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACA 105
Query: 375 -HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEK 432
+ LPD TE+G++G+ LSGGQKQRI++ARA+ + I LLD+ SA+D+
Sbjct: 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 433 LVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQ 470
+ + + + +T IL+ H++ + +AD I V+++G+
Sbjct: 166 IFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 2e-41
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 53/230 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ N+ F+YP + + VL N SL+++ G K+AL+G SG+GKS++L LL P +G I
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
+DG + + + L S I ++ Q P LF ++RNN+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
G + SGG++QR+A+AR LL+ I+LLDE T LD +ER ++S
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 1066 AL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
+ E L K T I + H L + + D I+ ++ G+++ G
Sbjct: 140 LIFEVLKDK-----------TLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-41
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 52/225 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ F YP VL N S IEPG +A++GPSG+GKS++ L+L P G +
Sbjct: 1 LEVENVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
+DG I +++ L +G + Q+ LFS SI NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
LSGGQ+QR+ +AR L P I++LDE S LD E ER +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
A+ AL A+ T+I +AHR T+ ++D I+V++ G V
Sbjct: 138 AIAALK---------AAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-40
Identities = 69/289 (23%), Positives = 132/289 (45%), Gaps = 26/289 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++R++ Y D+ L G S + G++ L+G +G GK+T++ ++A P++G+I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAH 375
L+ ++ + +R+ IG V QEPSL+ ++ +N++ + A + +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLE-----------FFARLYGLSK 110
Query: 376 SFISQLPDQYSTELG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
+ ++ G ++ LSGG KQR++IA A++ +P +L+LDE TS LD E
Sbjct: 111 EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 430 SEKLVQEALE--RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486
S + + E L G T++L H + D + ++ DG++ GT L F
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK--EKF 228
Query: 487 YNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELS 535
+ ++ + E+ ++E L E +
Sbjct: 229 GGKGVIELEPERLELAELLEGLKLVKGEEELAEILEALLEEGVKIESIE 277
|
Length = 293 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-40
Identities = 71/214 (33%), Positives = 103/214 (48%), Gaps = 60/214 (28%)
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
I ++ F Y R L SL++ AG++VALVG +G GKST++ +A P++G+ILI
Sbjct: 2 IENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
D +I L L+ LR+ I
Sbjct: 59 DGKDIAKLPLEELRRR-------------------------------------------I 75
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+P QLSGGQ+QR+A+ARA++ NP +LLLDE TS LD S + + E L
Sbjct: 76 GYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123
Query: 439 ER-AMQGRTVILIAHRMSTIVNA-DMIAVVEDGQ 470
A +GRTVI++ H A D + V++DG+
Sbjct: 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-40
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 31/241 (12%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IE +N+ F YP L + SL+IE G +V L+GP+G+GKS++L LL P G
Sbjct: 3 MIEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 945 ILIDGKGIK-EYNLRRLRSQIGLVQQEPLLFSC--SIRNNICYG--NEAASEAEIVEVSK 999
+L+DG E +L LR ++GLV Q P ++ + + +G N EI E
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 1000 KA----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+A + + + P LSGGQKQR+AIA L P I+LLDE T+ L
Sbjct: 121 EALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGL 169
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D + R ++ L+ L + T I V H L V+ +D +VV+D G+++ G
Sbjct: 170 DPKGRRELLELLKKLKEEGGK--------TIIIVTHDLELVLEYADRVVVLDDGKILADG 221
Query: 1115 S 1115
Sbjct: 222 D 222
|
Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 1e-39
Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 257 IDIRDVCFAYPSRPDQLI--LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I++ +V + + L SL IP G++ ++G SG GKST++ L+ P++G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 315 DILIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIY 366
+ +D ++ L L+ LR+ IG + Q +L + ++ +N+ ++ + + +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
A ++ + L D+ + QLSGGQKQR+AIARA+ NP ILL DEATSAL
Sbjct: 122 VAELLE-----LVGLSDK----ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL 172
Query: 427 DSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
D E+ + + E L+ + G T++LI H M + D +AV++ G++ E GT
Sbjct: 173 DPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 86/237 (36%), Positives = 130/237 (54%), Gaps = 26/237 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ ++V + S + ILK S+ G + +VG SG GKST+I L+ R DP+ G I
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
LID ++IK +D+ LR+ IG V Q+P LF G++ DNI+ G M ++ + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-------DVEY 113
Query: 377 FIS--QLPDQYSTELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
++S L +Y+T R V+ LSGG+ QR++IAR + NP +LLLDE TSALD S ++
Sbjct: 114 YLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 434 VQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFY 487
++E + + TVI I H M D A + G + E +T DF+
Sbjct: 170 IEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA------KTYDFF 220
|
Length = 241 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 30/232 (12%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
E +N+ F+YP L++ SL I+ G V +VGP+G+GKS++L LL P G +L
Sbjct: 1 ELKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 947 IDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSKKA- 1001
+DGK + + +L+ LR ++GLV Q P F ++ + +G N E EI E ++A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1002 ---NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ P LSGGQKQR+AIA L P I+LLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
R ++ L+ L A T I V H L ++ +D ++V++ G+
Sbjct: 169 GRRELLELLKKLK---------AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 6e-39
Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 24/228 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++++ + Y S L SL++ G+ +AL+G SGCGK+T++ L+A P +G+I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIYNASMM 371
LID ++ + + R+NIG V Q+ +LF ++ +NI K+ + + +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR------- 108
Query: 372 ANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
A + + L R +LSGGQ+QR+A+ARA+ + P +LLLDE SALD++
Sbjct: 109 ARVRELLELVGL---EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 431 EKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+ ++E L+ G T I + H + AD IAV+ +G++ + G
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 1e-38
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 28/234 (11%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I++++V Y +++ LK +L I AG+ VA+VG SG GKST+++L+ P++G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 316 ILIDSLNIKDLDLKSL----RKNIGAVSQEPSLF-TGSLMDNIKVG------NMDADDEQ 364
+LI+ ++ L K L RK IG V Q +L ++++N+++ +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 365 IYNASMMAN-AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ + + P + LSGGQ+QR+AIARA++ NP I+L DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKPSE-----------LSGGQQQRVAIARALINNPKIILADEPT 170
Query: 424 SALDSESEKLVQEALERAM---QGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474
LDS++ K V E L R + +G+T+I++ H AD + ++DG++ E
Sbjct: 171 GNLDSKTAKEVLELL-RELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-38
Identities = 84/229 (36%), Positives = 141/229 (61%), Gaps = 4/229 (1%)
Query: 255 GNIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
G ++ R+ C Y R D L+L+ +++I G+ V +VG +G GKS++ + R + +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G+I+ID LNI + L LR I + Q+P LF+GSL N+ + DE+++ A +A+
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAH 1399
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
+F+S LPD+ E + G LS GQ+Q + +ARA+++ IL+LDEAT+A+D E++ L
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNL 1459
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
+Q + + TV+ IAHR++TI++ + V++ G+V E G +LLQ
Sbjct: 1460 IQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 78/226 (34%), Positives = 115/226 (50%), Gaps = 24/226 (10%)
Query: 886 IEFQNIKFNYPSRPEVT--VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I ++ F + S + T L + +L++ G VA+VGP G+GKSS+L+ LL + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+ + G I V QEP + + +IR NI +G E +V K +
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACAL 106
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+ LPDG T +GEKG LSGGQKQRI++AR + I LLD+ SA+DA R I
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
++ G L + T+I V H+L + ++D IVV+D G
Sbjct: 167 F--------ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 7e-38
Identities = 71/235 (30%), Positives = 126/235 (53%), Gaps = 33/235 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+I+++ ++ D+ +LKG SLS+ G++V ++G SG GKST++ + +P +G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 317 LIDSLNI-KDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI-----KVGNMDADD------E 363
+D ++ D+ LR+ +G V Q+ +LF ++++N+ KV + + E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ + A ++ P QLSGGQ+QR+AIARA+ +P ++L DE T
Sbjct: 120 LLEKVGLADKADAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPT 164
Query: 424 SALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
SALD E V + ++ A +G T+I++ H M AD + ++ G++ E G
Sbjct: 165 SALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 8e-38
Identities = 70/243 (28%), Positives = 119/243 (48%), Gaps = 28/243 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++R + ++ R +LKG L + G+++A++G SG GKST++ L+ P +G++
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 317 LIDSLNIKDL---DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG---NMDADDEQIYNAS 369
LID +I L +L LR+ +G + Q +LF ++ +N+ + +E+I
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 370 M----MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ P +LSGG K+R+A+ARA+ +P +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 426 LDS-ESEKLVQEALE-RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
LD S + + G T I++ H + T AD IAV+ DG++ GT L
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Query: 483 TSD 485
+ D
Sbjct: 227 SDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 9e-38
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 23/234 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS-- 312
I+I ++ Y ++ LK +L IP ++ AL+G SGCGKST++ + R D P
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 313 -NGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDE 363
G +L D +I K +D+ LR+ +G V Q+P+ F S+ DNI G + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+I S+ A L D+ L + LSGGQ+QR+ IARA+ P +LLLDE T
Sbjct: 119 EIVEESLKKAA------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 424 SALDSESEKLVQEALERAMQGRTVILIAHRMS-TIVNADMIAVVEDGQVTETGT 476
SALD + ++E ++ + T++++ H M +D A DG++ E G
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 58/218 (26%), Positives = 110/218 (50%), Gaps = 48/218 (22%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++R++ Y + L SL++ G++ L+G +G GK+T+I ++ P +G+I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAH 375
+ +IK + + +++ IG + +EPSL+ ++ +N+K
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------- 95
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
LSGG KQR+A+A+A++ +P +L+LDE TS LD ES +
Sbjct: 96 --------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 436 EAL-ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
E L E +G+T++L +H + D +A++ +G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 2e-37
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 32/237 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + + Y S V L++ SL +EPG +AL+GPSG GK+++L L+ P+ G I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG------NEAASEAEIVEVS 998
LIDG+ + R IG+V Q+ LF ++ NI +G +A A + E+
Sbjct: 58 LIDGRDVTGVPPERRN--IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ + ++ P +LSGGQ+QR+A+AR L + P+++LLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
+ L+ L EL T I V H + +D I VM++G +V++G
Sbjct: 165 LREELREELKEL------QREL--GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 17/225 (7%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I+++++ Y +++ LKG SLSI G+ VA+VG SG GKST+++++ P++G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 316 ILIDSLNIKDLDLKSL----RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASM 370
+ +D +I L K L R++IG V Q +L + ++N+++ + A +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKER 117
Query: 371 MANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
A + + L D+ L +LSGGQ+QR+AIARA+ +P I+L DE T LDS
Sbjct: 118 RERAEELLERVGLGDR----LNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 429 ESEKLVQEALER--AMQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
E+ K V E L G T++++ H AD I + DG++
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 73/248 (29%), Positives = 119/248 (47%), Gaps = 42/248 (16%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ ++ F Y +P IL S SIP G++ ++G +G GKST++ +A P +G++
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM----------------DA 360
L+D +I L K L K + V Q PS + V +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAP-----FGLTVYELVLLGRYPHLGLFGRPSKE 114
Query: 361 DDEQIYNA-SMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILL 418
D+E + A ++ H L R V +LSGG++QR+ IARA+ + PILL
Sbjct: 115 DEEIVEEALELLGLEH-------------LADRPVDELSGGERQRVLIARALAQETPILL 161
Query: 419 LDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
LDE TS LD + V E L +G TV+++ H ++ AD + +++DG++ G
Sbjct: 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221
Query: 476 THHSLLQT 483
T +L
Sbjct: 222 TPEEVLTE 229
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 7e-37
Identities = 81/250 (32%), Positives = 125/250 (50%), Gaps = 46/250 (18%)
Query: 886 IEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
IE +N+ + VT L++ SL+I G ++G SGAGKS++L L+ P G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 944 IILIDGKGIKEYN---LRRLRSQIGLVQQEP-LLFSCSIRNNICYGNEAASEA------- 992
+ +DG+ + + LR+LR +IG++ Q LL S ++ N+ + E A
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 993 -----EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
E+V +S KA+ P QLSGGQKQR+AIAR L P I+L
Sbjct: 122 VAELLELVGLSDKAD------RYPA-----------QLSGGQKQRVAIARALANNPKILL 164
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS--DVIVVM 1105
DEATSALD E+ + I+ L+ +N + T + + H + V+ D + V+
Sbjct: 165 CDEATSALDPETTQSILELLKDINRE--------LGLTIVLITHEME-VVKRICDRVAVL 215
Query: 1106 DKGEVVEMGS 1115
D+G +VE G+
Sbjct: 216 DQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 7e-37
Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 20/233 (8%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
++++++ ++P+ + L S SI G+ + LVG SG GKST+ + P++G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 316 ILIDSLNIKDLD---LKSLRKNIGAVSQEP--SL---FT--GSLMDNIKVGNMDADDEQI 365
I+ D ++ L K RK I V Q+P SL T + + +++ + E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
A ++ LP++ L + +LSGGQ+QR+AIARA+ NP +L+ DE TSA
Sbjct: 122 KEAVLLLLVGV---GLPEEV---LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175
Query: 426 LDSESEKLVQEALE--RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
LD + + + L+ + G T++ I H + + AD +AV+ G++ E G
Sbjct: 176 LDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-37
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 36/239 (15%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP----- 311
I++RD+ Y D+ LK +L IP K+ AL+G SGCGKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 312 SNGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNI-----KVGNMDAD-DE 363
G++L+D NI +D+ LR+ +G V Q+P+ F S+ DN+ G D + DE
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ ++ A L D+ L + + LSGGQ+QR+ IARA+ P +LL+DE T
Sbjct: 125 IVESSLKKAA-------LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 424 SALDSES----EKLVQEALERAMQGRTVILIAHRM---STIVNADMIAVVEDGQVTETG 475
SALD S E+L+ E ++ T++++ H M + + +D A G++ E G
Sbjct: 178 SALDPISTLKIEELITELKKKY----TIVIVTHNMQQAARV--SDYTAFFYLGELVEFG 230
|
Length = 253 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ ++ F YP + LK SL I G+ V L+G +G GKST++ L+ P++G++
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 317 LIDSLNIKD-LDLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG------NMDADDEQIYN 367
L+D L+ L LR+ +G V Q P LF ++ D + G + +E++
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A + + + P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPFN-----------LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 428 SESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+ + + E L++ + G+T+I++ H + ++ AD + V++DG++ G +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 49/248 (19%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ ++ + VL SL +E G V ++GPSG+GKS++L L +P+ G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 946 LIDGKGI-KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG---------NEAASEA-- 992
+DG+ + + ++ +LR ++G+V Q+ LF ++ N+ EA +A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 993 --EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
E V ++ KA+ + P QLSGGQ+QR+AIAR L P +ML DE
Sbjct: 120 LLEKVGLADKADAY------PA-----------QLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASR-TTQITVAH--RLATVINSDVIVVMDK 1107
TSALD E ++ ++ +LA T I V H A + +D ++ MD+
Sbjct: 163 PTSALDPELVGEVLDVMK----------DLAEEGMTMIIVTHEMGFAREV-ADRVIFMDQ 211
Query: 1108 GEVVEMGS 1115
G+++E G
Sbjct: 212 GKIIEEGP 219
|
Length = 240 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-36
Identities = 78/260 (30%), Positives = 133/260 (51%), Gaps = 18/260 (6%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ +V Y ++ + +L+I G+ + L+G SG GK+T + ++ R +P++G+I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIK-VGNMDADDEQIYNASMMANA 374
LID +I DLD LR+ IG V Q+ LF ++ +NI V + D++
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 375 HSFISQLPDQYSTELGQR-GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
L +E R +LSGGQ+QR+ +ARA+ +PPILL+DE ALD + K
Sbjct: 119 DLV--GLD---PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ 173
Query: 434 VQEALERAMQ--GRTVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLLQT--SDFYN 488
+QE ++ + G+T++ + H + + AD IAV++ G++ + T +L +DF
Sbjct: 174 LQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233
Query: 489 RLFTM--QNLRPIDDSRTKA 506
F + LR +
Sbjct: 234 DFFGESERGLRLLSLVSVAD 253
|
Length = 309 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-35
Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 54/228 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ Y + TVLN+ SL IE G VAL+GPSG+GKS++L + +P+ G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 946 LIDGKGI--KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKAN 1002
LIDG+ + E L LR +IG+V Q+ LF ++ NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
LSGGQ+QR+A+AR L P ++LLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
+ + L++L + T + V H L +D +VV+ G+
Sbjct: 139 VRALLKSLQAQLG--------ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-35
Identities = 71/251 (28%), Positives = 120/251 (47%), Gaps = 42/251 (16%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ Y ++ +++ +L IE G + L+GPSG+GK++ L ++ R +P G I
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICY------GNEAASEAEIVEVS 998
LIDG+ I + + LR +IG V Q+ LF ++ NI ++ + E+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 999 KKANI--HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+ ++ P +LSGGQ+QR+ +AR L P I+L+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMDKGEV 1110
+ + + ++ L + T + V H +LA D I VMD GE+
Sbjct: 168 PITRKQLQEEIKELQKE--------LGKTIVFVTHDIDEALKLA-----DRIAVMDAGEI 214
Query: 1111 VEMGSHSTLVA 1121
V+ + ++A
Sbjct: 215 VQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-35
Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 35/235 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++IR+V ++ D + SL I G+ V L+G SGCGK+T++ ++A F PS+G+I
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDADDEQIYNASMM 371
L+D +I D+ ++ IG V Q +LF ++ +N+ KV E
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 372 ANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ L R QLSGGQ+QR+A+ARA+V P +LLLDE SALD++
Sbjct: 121 LE----LVGL-----EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 431 EKLVQEALERAMQGR---TVILIAH------RMSTIVNADMIAVVEDGQVTETGT 476
+ +++ L + +Q T + + H MS D IAV+ DG++ + GT
Sbjct: 172 REQMRKEL-KELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 33/238 (13%)
Query: 257 IDIRDVCFAYPSRPDQLI-LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I++++V + ++ LK SLS+P G++ ++G SG GKST+I + P++G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 316 ILIDSLNIKDLDLKSL---RKNIGAVSQEPSLFTG-SLMDNI----KVGNMDAD--DEQI 365
+L+D ++ L K L R+ IG + Q +L + ++ +N+ ++ + +E++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 366 YN----ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
+ A ++ + QLSGGQKQR+ IARA+ NP +LL DE
Sbjct: 122 LELLELVGLEDKADAYPA---------------QLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 422 ATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
ATSALD E+ + + L + G T++LI H M + D +AV+E G+V E GT
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 35/253 (13%)
Query: 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IE +N+ + +VT L + SL + G ++G SGAGKS+++ + P G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 945 ILIDGK---GIKEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKK 1000
+L+DG + LR+ R +IG++ Q LL S ++ N+ E A + E+ ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-AEIEER 120
Query: 1001 AN-------IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
+ D + P QLSGGQKQR+ IAR L P ++L DEATS
Sbjct: 121 VLELLELVGLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV--INSDVIVVMDKGEVV 1111
ALD E+ + I++ L +N + T + + H + V I D + VM+KGEVV
Sbjct: 170 ALDPETTQSILALLRDINRE--------LGLTIVLITHEMEVVKRI-CDRVAVMEKGEVV 220
Query: 1112 EMGSHSTLVAESQ 1124
E G+ + A Q
Sbjct: 221 EEGTVEEVFANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-35
Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 26/206 (12%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+++R+V Y + L+ SLS+ G+ VALVG SGCGKST++ ++A P++G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVG----NMDADDEQIYNASM 370
+L+D + + G V Q+ +L +++DN+ +G + + + +
Sbjct: 61 VLVD-----GEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 371 MANAH--SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ F + P QLSGG +QR+A+ARA+ +P +LLLDE SALD+
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 429 ESEKLVQEALERAMQ--GRTVILIAH 452
+ + +QE L + G+TV+L+ H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 86/264 (32%), Positives = 151/264 (57%), Gaps = 26/264 (9%)
Query: 875 ESSESGRIK--GRIEFQNIKFNYPS--RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSV 930
SS SG + G I+ ++ Y + +P VL + I+PG KV + G +G+GKSS+
Sbjct: 7 GSSNSGLVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSL 63
Query: 931 LALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAAS 990
R D +G I+IDG I + L LRS++ ++ Q+P+LFS SIR N+ +
Sbjct: 64 SLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL-DPECKCT 122
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ + E + A + + + SLP G D VV E G S GQ+Q +AR +++ +I+++DE
Sbjct: 123 DDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDE 182
Query: 1051 ATSALDAESE----RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMD 1106
AT+++D +E +V+++A A RT +T+AHR++T++++D+++V+
Sbjct: 183 ATASIDMATENILQKVVMTA-------------FADRTV-VTIAHRVSTILDADLVLVLS 228
Query: 1107 KGEVVEMGSHSTLVAESQGVYSRL 1130
+G +VE + L+A+ GV++ L
Sbjct: 229 RGILVECDTPENLLAQEDGVFASL 252
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 4e-35
Identities = 72/240 (30%), Positives = 128/240 (53%), Gaps = 19/240 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ +V Y + + +L I G+ + L+G SG GK+T + ++ R +P++G+I
Sbjct: 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIK-VGNMDADDEQIYNA---SMM 371
ID +I++ D LR+ IG V Q+ LF ++ +NI V + ++ ++
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
A ++ D+Y E LSGGQ+QR+ +ARA+ +PP+LL+DE ALD +
Sbjct: 119 ALVGLDPAEFADRYPHE-------LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 432 KLVQEALERAMQ--GRTVILIAHRM-STIVNADMIAVVEDGQVTETGTHHSLL--QTSDF 486
+QE +R Q G+T++ + H + AD IA++++G++ + GT +L +DF
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 7e-35
Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 30/272 (11%)
Query: 869 IEPDAPESSESGRIK-GRIEFQNIKFNY----PSRPEVTVLNNFSLQIEPGLKVALVGPS 923
IEP +P S+ ++ G + F+ ++ Y P VL S +I P KV +VG +
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRT 1345
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
G+GKS++L +R + G I ++G+ I Y LR LR Q ++ Q+P+LF ++R N+
Sbjct: 1346 GSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVD 1405
Query: 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR- 1042
EA+S AE+ + + + ++S +G D+ V E G S GQ+Q + +AR LLK+
Sbjct: 1406 PFLEASS-AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464
Query: 1043 PAIMLLDEATS----ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098
+L+DEAT+ ALD + + ++SA A T IT+AHRL TV
Sbjct: 1465 SGFILMDEATANIDPALDRQIQATVMSAFSAY--------------TVITIAHRLHTVAQ 1510
Query: 1099 SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130
D I+VMD G V EMGS LV Q ++ +
Sbjct: 1511 YDKIIVMDHGAVAEMGSPRELVMNRQSIFHSM 1542
|
Length = 1560 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 9e-35
Identities = 70/243 (28%), Positives = 114/243 (46%), Gaps = 38/243 (15%)
Query: 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKS---SVLALLLRFYDPN 941
IE +N+ Y E V L + +L+IE G VA+VGPSG+GKS ++L L + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 942 EGIILIDGKGIKEYNLRRL----RSQIGLV-QQEPLLFSCSIRNNICYG------NEAAS 990
G +LI+GK + + + + L R +IG V Q LL ++ N+ +
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 991 EAEIVEVSKKANI-HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+ E+ + + + P +LSGGQ+QR+AIAR L+ P I+L D
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILAD 167
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
E T LD+++ + ++ L LN + T I V H +D ++ + G+
Sbjct: 168 EPTGNLDSKTAKEVLELLRELNKE--------RGKTIIMVTHDPELAKYADRVIELKDGK 219
Query: 1110 VVE 1112
+ E
Sbjct: 220 IEE 222
|
Length = 226 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 1e-34
Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 24/250 (9%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IEF+ + + S +L + S++ E G +VGPSGAGKS+++ L+ R DP EG
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
ILIDG IK ++ LR +IG+V Q+P LF ++++NI YG E K ++
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGE-------KNVDVE 112
Query: 1005 DFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
++S L Y T LSGG+ QR++IARTL P ++LLDE TSALD S +
Sbjct: 113 YYLSIVGLNKEYAT---RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVA 1121
I + L K + T I + H + D ++KG +VE
Sbjct: 170 IEELIVKLKNKMN--------LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
Query: 1122 ESQGVYSRLY 1131
Q ++L+
Sbjct: 222 NPQNEVTKLF 231
|
Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 22/232 (9%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+ +R++ Y L SL I G+ + +VG SG GKST+ L+A PS+G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 316 ILIDSLNI-KDLDLKSLRKNIGAVSQEP--SL---FT--GSLMDNIKVGNMDADDEQIYN 367
IL+D + K+ + + V Q+P SL T L + ++ + ++I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
LP + L +R +LSGGQ+QRIAIARA++ P +L+LDE TSALD
Sbjct: 124 L-----LDQV--GLPPSF---LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173
Query: 428 SESEKLVQEALERAMQGR--TVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+ + L + R T + I+H ++ + + D IAV+++GQ+ E G
Sbjct: 174 VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225
|
Length = 252 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 76/240 (31%), Positives = 125/240 (52%), Gaps = 34/240 (14%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+E +N++ ++ S VL + +L IE G V L+GPSG GKS++L ++ +P G
Sbjct: 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG--NEAASEAEI----VEV 997
ILIDG+ + + + I +V Q L+ ++ NI +G +AEI EV
Sbjct: 60 ILIDGRDVTDLPPEKRG--IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+K + ++ P QLSGGQ+QR+A+AR L+++P + LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGS 1115
+ ++ S ++ L+ + TT I V H A + +D IVVM+ G + ++G+
Sbjct: 167 KLRVLMRSEIKKLHERLG--------TTTIYVTHDQVEAMTL-ADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 50/224 (22%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
++ ++ Y R +L SLSI AG++V ++G +G GKST++ +A PS+G+IL
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 318 IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSF 377
+D ++ L K L + I V Q ++ + +
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--------ALELLGL---------------------- 87
Query: 378 ISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEK 432
L R +LSGG++QR+ +ARA+ + PPILLLDE TS LD E +
Sbjct: 88 ---------AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
L++ +G+TV+++ H ++ AD + +++DG++ G
Sbjct: 139 LLRR--LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-34
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++I V ++ +L+ +LS+ G+ VA++G SGCGKST++ L+A P++G++
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAH 375
L+D + +IG V QE +L +++DN+ +G + A A
Sbjct: 61 LLD-----GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG---LELRGKSKAEARERAK 112
Query: 376 SFISQLPDQYSTELGQRG----VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
+ L QLSGG +QR+AIARA+ P +LLLDE ALD+ +
Sbjct: 113 ELLEL------VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTR 166
Query: 432 KLVQEALER--AMQGRTVILIAH 452
+ +Q+ L R +TV+L+ H
Sbjct: 167 EELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-34
Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 24/180 (13%)
Query: 886 IEFQNIKFNYPS-RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+E +N+ Y VT L + SL +E G VALVGPSG GKS++L ++ P G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAA--SEAEIVEVS--- 998
+L+DG+ + G V Q+ L ++ +N+ G E +AE E +
Sbjct: 61 VLVDGEPV-----TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 999 -KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ + F ++ P QLSGG +QR+A+AR L P ++LLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 4e-34
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 28/238 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ +N+ F+YP+ E L N S +I G VA++G +G+GKS++ +L P G I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAE----IVEV 997
IDG I + NL+ +R +IG++ Q P ++ ++I +G N+ + I ++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+KK + D++ P LSGGQKQR+AIA L P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
+ +R I + L T I++ H + I +D ++V +G+++ G
Sbjct: 176 KGKREIKKIMVDLRKTRKK--------TLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 9e-34
Identities = 82/256 (32%), Positives = 135/256 (52%), Gaps = 41/256 (16%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++R V ++ R IL G L +P G+++A++G SG GKST++ L+ P G+I
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 317 LIDSLNIKDL---DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG---NMDADDEQIYNAS 369
LID +I L +L +RK +G + Q+ +LF+ ++ +N+ + + I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 370 MM---------ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
+M A A + S +LSGG ++R+A+ARAI +P +L LD
Sbjct: 126 LMKLELVGLRGAAADLYPS---------------ELSGGMRKRVALARAIALDPELLFLD 170
Query: 421 EATSALD----SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
E TS LD ++L++E L A+ G TVI++ H + +++ AD +AV+ DG+V G
Sbjct: 171 EPTSGLDPISAGVIDELIRE-LNDAL-GLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228
Query: 476 THHSLLQTSDFYNRLF 491
T LL + D + R F
Sbjct: 229 TPEELLASDDPWVRQF 244
|
Length = 263 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-33
Identities = 67/224 (29%), Positives = 92/224 (41%), Gaps = 68/224 (30%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
E +N+ F Y R L+N SL ++ G VALVGP+G+GKS++L + P G IL
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 947 IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
IDGK I + L LR +
Sbjct: 58 IDGKDIAKLPLEELRRR------------------------------------------- 74
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
I +P QLSGGQ+QR+A+AR LL P ++LLDE TS LD S ++
Sbjct: 75 IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
L L T I V H +D ++V+ G+
Sbjct: 123 LRELA---------EEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 72/216 (33%), Positives = 116/216 (53%), Gaps = 29/216 (13%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID--SLNIKDLDL 328
D +LKG L++ G++V ++G SG GKST++ + +P +G I+ID L ++
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 329 KSLRKNIGAVSQEPSLFTG-SLMDNI-----KVGNMDADDEQIYNASMMANAHSFISQ-- 380
LR+ +G V Q+ +LF ++++NI KV M + + A + +
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-------ERALELLEKVG 124
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE- 439
L D+ QLSGGQ+QR+AIARA+ NP ++L DE TSALD E LV E L+
Sbjct: 125 LADKAD----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE---LVGEVLDV 177
Query: 440 ---RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
A +G T++++ H M AD + ++DG++
Sbjct: 178 MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-33
Identities = 81/247 (32%), Positives = 117/247 (47%), Gaps = 34/247 (13%)
Query: 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN- 941
IE +++ Y + L + +L I AL+GPSG GKS++L L R D
Sbjct: 5 IPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP 61
Query: 942 ----EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG---NEAASEA 992
EG +L+DGK I + ++ LR ++G+V Q+P F SI +N+ YG + +
Sbjct: 62 GARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKE 121
Query: 993 --EIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
EIVE S KKA + D + + LSGGQ+QR+ IAR L +P ++L+D
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLH-------KSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108
E TSALD S I + EL + T + V H + SD G
Sbjct: 175 EPTSALDPISTLKIEELIT----------ELKKKYTIVIVTHNMQQAARVSDYTAFFYLG 224
Query: 1109 EVVEMGS 1115
E+VE G
Sbjct: 225 ELVEFGP 231
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 85/245 (34%), Positives = 116/245 (47%), Gaps = 35/245 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI- 944
IE +N+ Y E L N +L I AL+GPSG GKS++L L R D G+
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 945 ----ILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA------ASEA 992
+L DG+ I K+ ++ LR ++G+V Q+P F SI +NI YG
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 993 EIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
EIVE S KKA +L D + + LSGGQ+QR+ IAR L P ++LLDE
Sbjct: 119 EIVEESLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
TSALD + I ++ EL + T + V H + SD GE+
Sbjct: 172 TSALDPIATGKIEELIQ----------ELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
Query: 1111 VEMGS 1115
VE G
Sbjct: 222 VEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-33
Identities = 75/241 (31%), Positives = 124/241 (51%), Gaps = 32/241 (13%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I+++++ YP LK +L I G+MVA++G SG GKST++ + DP++G+
Sbjct: 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 316 ILIDSLNIKDL---DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMM 371
IL + + I L +L+ LR++IG + Q+ +L S+++N+ +G +
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG----------YT 110
Query: 372 ANAHSFISQLP--DQYS-----TELG------QRGVQLSGGQKQRIAIARAIVKNPPILL 418
+ S D+ +G QR LSGGQ+QR+AIARA+V+ P I+L
Sbjct: 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170
Query: 419 LDEATSALDSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
DE ++LD ES K V + L+ G TVI+ H++ AD I ++ G++ G
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
Query: 476 T 476
Sbjct: 231 P 231
|
Length = 258 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 8e-33
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 30/251 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ Y + T L+ S ++EPG L+GP+GAGK+++L +L P G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNI-----CYGN-EAASEAEIVEVS 998
L+ G + + ++R +IG V QEP L+ ++R N+ YG + +E I E+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ + D + SGG KQR++IA LL P +++LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117
S R I L L T + H L D +++++ G+++ G+
Sbjct: 171 SRREIWELLRELA--------KEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222
Query: 1118 TLVAESQGVYS 1128
L + G
Sbjct: 223 ELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 6/233 (2%)
Query: 255 GNIDIRDVCFAYPS--RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
G I I D+C Y + +P +LK I G+ V + G +G GKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA 372
+G I+ID ++I L L +LR + + Q+P LF+GS+ N+ DD +++ A +A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDD-RLWEALEIA 133
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+ + LP + + G S GQ+Q +ARA V+ IL++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
++Q+ + A RTV+ IAHR+STI++AD++ V+ G + E T +LL D
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQED 246
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 69/233 (29%), Positives = 129/233 (55%), Gaps = 32/233 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++++V ++ +LK +L I G+ V L+G SGCGKST++ ++A +P++G+I
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DEQIYNAS 369
LID ++ DL + ++ I V Q +L+ ++ +NI K+ + D+++ +
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
+ +++ P +QLSGGQ+QR+A+ARA+V+ P + LLDE S LD++
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 430 SEKLVQEALERAMQ--GRTVILIAHR----MSTIVNADMIAVVEDGQVTETGT 476
L++ +++ + G T I + H M+ AD I V+ DG++ + GT
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL---ADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 31/238 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ ++ T +++ SL I+ G V L+GPSG GK+++L ++ F P+ G I
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGN-------EAASEAEIVEV 997
L+DG+ I ++ + IG+V Q LF ++ N+ +G +A +A + E
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ + F P QLSGGQ+QR+A+AR L+ P ++LLDE SALDA
Sbjct: 121 LELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
+ + L+ L EL +T A + SD I VM+ G + ++G+
Sbjct: 170 KLREQMRKELKELQ------RELGITFVYVTHDQEEALAM-SDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 2e-32
Identities = 57/182 (31%), Positives = 88/182 (48%), Gaps = 26/182 (14%)
Query: 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
+E + + ++ V VL + +L +E G VA++GPSG GKS++L L+ P
Sbjct: 1 MALLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIV 995
G +L+DG+ + IG V QE L ++ +N+ G ++A +
Sbjct: 58 GEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
E+ + + F P QLSGG +QR+AIAR L RP ++LLDE AL
Sbjct: 113 ELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 1056 DA 1057
DA
Sbjct: 162 DA 163
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 83/302 (27%), Positives = 132/302 (43%), Gaps = 56/302 (18%)
Query: 856 LAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRP--------EVTVLNNF 907
L A L + I + + + +N+ Y SR EV +++
Sbjct: 254 LLAAVPRLGDEKIIRLPRRGPLRAEPL---LSVRNLSKRYGSRKGLFVRERGEVKAVDDV 310
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK--GIKEYNLRRLRSQIG 965
S + G + LVG SG+GKS++ +L P+ G I+ DG+ + LRRLR +I
Sbjct: 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQ 370
Query: 966 LVQQEPLLFSC-----SIRNNI-------CYGNEAASEAEIVEVSKKANI-HDFISSLPD 1012
+V Q+P +S ++ + + G+ A A + E+ + + +F+ P
Sbjct: 371 MVFQDP--YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH 428
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA--LEAL 1070
+LSGGQ+QR+AIAR L P +++LDE SALD V V A L L
Sbjct: 429 -----------ELSGGQRQRVAIARALALEPKLLILDEPVSALD-----VSVQAQVLNLL 472
Query: 1071 NPKSSSCGELASR--TTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127
+L T + ++H LA V +D + VM G +VE G + Q Y
Sbjct: 473 K-------DLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPY 525
Query: 1128 SR 1129
+R
Sbjct: 526 TR 527
|
Length = 539 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-32
Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + +V F+YP+ + LK S I G+ VA++G +G GKST+ ++ P +G+I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEP-SLFTGSLM-DNIKVG--NMDADDEQ----IYNA 368
ID + I +LK +RK IG + Q P + F G+ + D+I G N ++ I +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ ++ + P Q LSGGQKQR+AIA + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEP-QN----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 429 ESEKLVQEALE--RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
+ ++ +++ + R + +T+I I H M + AD + V +G++ G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-32
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 17/198 (8%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
I ++ F+Y + IL SL + AG+++AL G +G GK+T+ ++A S+G IL
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 318 IDSLNIKDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
++ K + K RK+IG V Q+ LFT S+ + + +G + D +++ +
Sbjct: 59 LNG---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
+ L +++ L SGGQKQR+AIA A++ +L+ DE TS LD ++ + V
Sbjct: 116 --LYALKERHPLSL-------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 436 EALER-AMQGRTVILIAH 452
E + A QG+ VI+I H
Sbjct: 167 ELIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 4e-32
Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 38/235 (16%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ +V + + L +L I G+ V L+G SGCGK+T + ++A +P++G I
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDAD--DEQIYNAS 369
I ++ DL K ++I V Q +L+ ++ DNI K+ + D DE++ +
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-- 427
+ I L D+ QLSGGQ+QR+A+ RAIV+ P + L+DE S LD
Sbjct: 116 ELLQ----IEHLLDRKPK-------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 428 ------SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+E ++L Q G T I + H + AD IAV+ DGQ+ + G
Sbjct: 165 LRVQMRAELKRLQQR------LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 35/239 (14%)
Query: 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IE +N+ Y E V L SL IE G VA+VGPSG+GKS++L +L P G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 945 ILIDGKGIKEYNLRRL----RSQIGLV-QQEPLLFSCSIRNNICYGNEAAS------EAE 993
+ +DG I + + + L R IG V Q LL + N+ A
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
E+ ++ + D ++ P +LSGGQ+QR+AIAR L P I+L DE T
Sbjct: 121 AEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEV 1110
LD+E+ + ++ L LN + + TT + V H LA +D I+ + G++
Sbjct: 170 NLDSETGKEVMELLRELNKE--------AGTTIVVVTHDPELAEY--ADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 5e-32
Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 36/237 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ ++ VL L ++ G V ++GPSG+GKS++L + +P+ G I
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 946 LIDGKGI--KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG-------NEAASEAEIV 995
+IDG + + N+ LR ++G+V Q+ LF ++ NI ++A +E +
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
E+ +K + D + P QLSGGQ+QR+AIAR L P +ML DE TSAL
Sbjct: 118 ELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSAL 166
Query: 1056 DAESERVIVSALEALNPKSSSCGELA-SRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
D E ++ L+ + +LA T + V H + +D ++ MD G +
Sbjct: 167 DPE---LVGEVLDVMK-------DLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 7e-32
Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 44/250 (17%)
Query: 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+E +N+ ++P+ V L++ S I+ G + LVG SG+GKS++ +L P G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 945 ILIDGKGIKEYNLRRL---RSQIGLVQQEPLLFSC-----SIRNNIC---------YGNE 987
I+ DGK + + + R R +I +V Q+P S +I I E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
A EA ++ + + ++ P +LSGGQ+QR+AIAR L P +++
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASR--TTQITVAHRLATVIN-SDVIVV 1104
DE TSALD + I+ L+ +L T + + H L V +D + V
Sbjct: 169 ADEPTSALDVSVQAQILDLLK----------KLQEELGLTLLFITHDLGVVAKIADRVAV 218
Query: 1105 MDKGEVVEMG 1114
M G++VE G
Sbjct: 219 MYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 73/234 (31%), Positives = 119/234 (50%), Gaps = 34/234 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++ +V Y + L G SL I G+ L+G SGCGK+T++ L+A F P++G+I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADD------EQI 365
L+D +I +L ++ + V Q +LF ++ +NI ++ + + E +
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ A+ SQL SGGQ+QR+AIARA+V P +LLLDE A
Sbjct: 116 DLVQLEGYANRKPSQL---------------SGGQQQRVAIARALVNEPKVLLLDEPLGA 160
Query: 426 LDSESEKLVQEALERAMQ--GRTVILIAHRMS-TIVNADMIAVVEDGQVTETGT 476
LD + K +Q L+R + G T + + H + +D IAV+ G++ + GT
Sbjct: 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 9e-32
Identities = 74/207 (35%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--P--- 311
I +R++ F Y LK +L I ++ A +G SGCGKST++ R Y+ P
Sbjct: 14 IQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 312 SNGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNAS 369
+ G+IL+D NI D+ LR +G V Q+P+ F S+ DNI G E++ A
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLF--EKLSRAE 128
Query: 370 MMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
M +++ L ++ +L Q G LSGGQ+QR+ IAR I P +LLLDE SALD
Sbjct: 129 MDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
Query: 428 SESEKLVQEALERAMQGRTVILIAHRM 454
S ++E + Q TV+++ H M
Sbjct: 189 PISTGRIEELITELKQDYTVVIVTHNM 215
|
Length = 260 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-31
Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 4/229 (1%)
Query: 255 GNIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
G+I DV Y RP+ +L G S I + V +VG +G GKS++++ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G ILID +I L LRK +G + Q P LF+G++ N+ N + +D ++ + A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAH 1352
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
I + E+ + G S GQ+Q +++ARA+++ IL+LDEAT+A+D ++ L
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
+Q+ + + T+++IAHR++TI++ D I V++ G+V E T +LL
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461
|
Length = 1622 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 7e-31
Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 38/222 (17%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKS 330
LK SLSI G+ VAL+G SG GKST++ + +P++G +LID +I L L+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE- 388
LR+ IG + Q+ +L S+++N+ G S L + E
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSG--------------RLGRRSTWRSLFGLFPKEE 121
Query: 389 ----------LG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+G QR QLSGGQ+QR+AIARA+++ P ++L DE ++LD S +
Sbjct: 122 KQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR 181
Query: 433 LVQEALERAMQ--GRTVILIAHRMSTIV-NADMIAVVEDGQV 471
V + L+R + G TVI+ H++ AD I ++DG++
Sbjct: 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 79/257 (30%), Positives = 122/257 (47%), Gaps = 30/257 (11%)
Query: 885 RIEFQNIKFNYPSRPEV-TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
+ +N+ Y LNN SL+IE G + +VG SG+GKS++ LL P+ G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 944 IILIDGKGI-KEYNLRRLRSQIGLVQQEPL-----LFSC--SIRNNICYGNEAASEAEIV 995
IL+DGK + + + + +V Q+P + + + + S+ I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 996 EVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
E+ + + F+ P +LSGGQ+QRIAIAR L+ P +++LDE TSA
Sbjct: 123 ELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LD V V A + LN E T + ++H LA V + D I VMD G++VE+
Sbjct: 172 LD-----VSVQA-QILNLLLELKKER--GLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223
Query: 1114 GSHSTLVAESQGVYSRL 1130
G L++ Y+R
Sbjct: 224 GPTEELLSHPSHPYTRE 240
|
Length = 252 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 80/254 (31%), Positives = 118/254 (46%), Gaps = 58/254 (22%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ YP+ L + SL I PG VAL+GPSGAGKS++L L +P G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 946 LIDGKGI---KEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAA-----------S 990
LIDG I K LR+LR QIG++ QQ L+ S+ N+ G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 991 EAEIVEVS---KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
+ E ++ + D D QLSGGQ+QR+AIAR L+++P ++L
Sbjct: 119 KEEKQRALAALERVGLLDKAYQRAD-----------QLSGGQQQRVAIARALMQQPKLIL 167
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--------- 1098
DE ++LD S R ++ L+ +N R ITV +++
Sbjct: 168 ADEPVASLDPASSRQVMDLLKRIN-----------REEGITV------IVSLHQVDLARE 210
Query: 1099 -SDVIVVMDKGEVV 1111
+D IV + G +V
Sbjct: 211 YADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 62/260 (23%), Positives = 122/260 (46%), Gaps = 6/260 (2%)
Query: 566 LVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGW-YSLAFSLVGLFSLFTHTLQ 624
L++ + +G + +F + + E SLA L+ + L LQ
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRF-LDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQ 59
Query: 625 HYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEK--PQNDAGSLTSRIVSDTSMVKAIISD 682
F+ GE+ +R+ L+ +LR + N G LTSR+ +D S ++ + D
Sbjct: 60 GSFYL--GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 683 RMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHT 742
++ + Q +++++ IV W++ LV A++P + + AK + + A+
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 743 EFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNI 802
+ S+ ES S IRTV +F EE L++ +LE +++ K++I G+ G + + +
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 803 AHAVALWYTAVLIDKKQATF 822
++A+ALW+ A L+ +
Sbjct: 238 SYALALWFGAYLVISGGLSV 257
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 2e-30
Identities = 78/242 (32%), Positives = 120/242 (49%), Gaps = 34/242 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE + + ++ R TVL L + G +A++GPSG+GKS++L L++ P+ G +
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 946 LIDGKGI---KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG---NEAASEAEIVE-V 997
LIDG+ I E L RLR ++G++ Q LF S ++ N+ + + SE EI E V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 998 SKK---ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+K + P +LSGG K+R+A+AR L P ++L DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LD + VI + +L EL T I V H L T +D I V+ G++V
Sbjct: 167 LDPIASGVIDDLIRSLK------KELG--LTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218
Query: 1114 GS 1115
G+
Sbjct: 219 GT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 31/237 (13%)
Query: 257 IDIRDVCFAYPSRPDQLI-LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I+++++ +P + L SL IPAG++ ++G+SG GKST+I + P++G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 316 ILIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIYN 367
+L+D ++ L L+ R+ IG + Q +L + ++ DN+ ++ + +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK--- 118
Query: 368 ASMMANAHSF-----ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
A +S D+Y QLSGGQKQR+AIARA+ NP +LL DEA
Sbjct: 119 ----ARVTELLELVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEA 167
Query: 423 TSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
TSALD + + + E L+ + G T++LI H M + D +AV++ G++ E GT
Sbjct: 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 25/237 (10%)
Query: 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--P 311
G I ++D+ Y D LK +L I ++ AL+G SGCGKST + + R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 312 S---NGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-------NMD 359
S G++L+D +I D+D+ LRK +G V Q+P+ F S+ DN+ G +
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
DE I S+ A L D+ L + + LSGGQ+QR+ IARA+ P +LL+
Sbjct: 118 KLDE-IVEKSLKGAA------LWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
DE TSALD S ++E ++ + T++++ H M +D A +G++ E G
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227
|
Length = 250 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 34/243 (13%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+E +N+ F Y +P +L++ S I G ++GP+G+GKS++L L P G
Sbjct: 2 MLEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFSCSIRNNICYG----------NEAASEAE 993
+L+DGK I + + L ++ V Q P F ++ + G E
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
+ E + + D V E LSGG++QR+ IAR L + I+LLDE TS
Sbjct: 119 VEEALELLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
LD + ++ L LN + T + V H L +D ++++ G++V
Sbjct: 168 HLDIAHQIEVLELLRDLNREKG--------LTVVMVLHDLNLAARYADHLILLKDGKIVA 219
Query: 1113 MGS 1115
G+
Sbjct: 220 QGT 222
|
Length = 258 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 3e-30
Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 35/261 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN-- 941
IE +N Y E + N +++I A++GPSG GK+++L + R D P
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 942 -EGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
EG I G+ I + ++ R ++G+V Q+P F SI +N+ +G
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 993 EIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
IVE S KKA + D + S + + G +LSGGQ+QR+ IAR L P ++LLDE
Sbjct: 121 RIVEESLKKAALWDEVKSELN-------KPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
TSALD + + I LE EL+ T + V H + I +D I M +GE+
Sbjct: 174 TSALDPIATQRIEKLLE----------ELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
Query: 1111 VEMGSHSTLVAESQGVYSRLY 1131
+E G +V + + Y
Sbjct: 224 IEYGPTREIVERPKNKLTEEY 244
|
Length = 250 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 7e-30
Identities = 85/252 (33%), Positives = 123/252 (48%), Gaps = 51/252 (20%)
Query: 886 IEFQNIKFNYP-SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
IE +NI +P + LNN SL I G ++G SGAGKS+++ + P G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 945 ILIDGKGI---KEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAA--SEAEI---- 994
+L+DG+ + E LR+ R QIG++ Q LL S ++ +N+ E A +AEI
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 995 ------VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
V +S KA+ P QLSGGQKQR+AIAR L P ++L
Sbjct: 122 TELLELVGLSDKAD------RYP-----------AQLSGGQKQRVAIARALASNPKVLLC 164
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITV---AHRLATVINS--DVIV 1103
DEATSALD + R I+ L+ +N R +T+ H + V+ D +
Sbjct: 165 DEATSALDPATTRSILELLKDIN-----------RELGLTIVLITHEMD-VVKRICDRVA 212
Query: 1104 VMDKGEVVEMGS 1115
V+D G +VE G+
Sbjct: 213 VIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-29
Identities = 116/484 (23%), Positives = 214/484 (44%), Gaps = 43/484 (8%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSG-VLIAVICCWEVSLLIFL 86
F T+ TG+VI S + I + + F++ S LI + ++ ++
Sbjct: 1001 FHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS----TISLWA 1055
Query: 87 VVPMILVIGATYTKRMNAVSATKLL---YLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
++P++++ A Y + + L S + + ++ + ++ A+ K
Sbjct: 1056 IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKIN 1115
Query: 144 SDCMDKQI------IISRGEALIKGVGLGMFQSVTFCCWALIIWVGAV--VVTAKRSTGG 195
MD I S I+ LG ++IW+ A V+ +
Sbjct: 1116 GKSMDNNIRFTLANTSSNRWLTIRLETLG----------GVMIWLTATFAVLRNGNAENQ 1165
Query: 196 EVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEK--- 252
A+ M +L + L V QA A + V + I S+ + +
Sbjct: 1166 AGFASTMGLLL-SYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNR 1224
Query: 253 ------IDGNIDIRDVCFAY-PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLV 305
G+I DV Y P P +L G S + + V +VG +G GKS++++ +
Sbjct: 1225 PVSGWPSRGSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNAL 1282
Query: 306 ARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQI 365
R + G I+ID ++ L LR+ + + Q P LF+G++ NI + + +D +
Sbjct: 1283 FRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADL 1341
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ A A+ I + P E+ + G S GQ+Q +++ARA+++ IL+LDEAT++
Sbjct: 1342 WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
Query: 426 LDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL--QT 483
+D ++ L+Q + + T+++IAHR++TI++ D I V+ GQV E + LL T
Sbjct: 1402 VDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDT 1461
Query: 484 SDFY 487
S F+
Sbjct: 1462 SAFF 1465
|
Length = 1495 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 65/195 (33%), Positives = 106/195 (54%), Gaps = 17/195 (8%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-----GDILIDSLNIKD 325
D+ L S+ IP ++ A++G SGCGKST + + R D + G++ N+ D
Sbjct: 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110
Query: 326 LDLK--SLRKNIGAVSQEPSLFTGSLMDNI----KVGNMDADDEQIYNASMMANAHSFIS 379
D+ +LR+ IG V Q+P+ F S+ DN+ K+ D D ++ S+ A
Sbjct: 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAA----- 165
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE 439
L D+ +L G+ LSGGQ+QR+ IARAI +P ++L+DE SALD + +++ +E
Sbjct: 166 -LWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIE 224
Query: 440 RAMQGRTVILIAHRM 454
+ TV+++ H M
Sbjct: 225 ELAEEYTVVIVTHNM 239
|
Length = 285 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 55/200 (27%), Positives = 103/200 (51%), Gaps = 31/200 (15%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
D++IL +L+I GKM A++G SG GKST+++++ +G + ++ L+ K
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 331 ----LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFIS-----QL 381
R+ +G + Q +L++N E + + + +S +
Sbjct: 70 ASKFRREKLGYLFQN-----FALIEN----------ETVEENLDLGLKYKKLSKKEKREK 114
Query: 382 PDQYSTELG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
+ ++G Q+ +LSGG++QR+A+ARAI+K PP++L DE T +LD ++ V
Sbjct: 115 KKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVL 174
Query: 436 EAL-ERAMQGRTVILIAHRM 454
+ L E +G+T+I++ H
Sbjct: 175 DLLLELNDEGKTIIIVTHDP 194
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-29
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNI--KDLD 327
+KG + K+ AL+G SG GKST + + R D G IL ++I K+++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNI-----KVGNMDADD-EQIYNASMMANAHSFISQL 381
+ +RK+IG V Q P+ F S+ +NI + G D ++I S+ A L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA------L 149
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
DQ +L + + LSGGQ+QR+ IARAI P ILL+DE SALD S ++E +
Sbjct: 150 WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209
Query: 442 MQGRTVILIAHRM 454
+ T+I++ H M
Sbjct: 210 KKNYTIIIVTHNM 222
|
Length = 267 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 32/239 (13%)
Query: 886 IEFQNIKFNYP--SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I ++I F YP + L + S + G VA+VG +G+GKS++ LL P G
Sbjct: 6 IRVEHISFRYPDAATY---ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSK 999
I + G + E + +R Q+G+V Q P ++++++ +G N E+VE
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 1000 KA----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+A + DF++ P +LSGGQKQR+AIA L +P I++LDEATS L
Sbjct: 123 QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
D R ++ + L + T +++ H L +D ++VM+KGE++E G
Sbjct: 172 DPRGRREVLETVRQLKEQ--------KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 54/226 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ Y + L++ SL +E G L+GP+GAGK++++ ++L P+ G I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
+ GK IK+ ++ +IG + +EP L Y N E N+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSL----------YENLTVRE----------NLK- 95
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
LSGG KQR+A+A+ LL P +++LDE TS LD ES R
Sbjct: 96 -------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
L L T + +H L D + +++ G +
Sbjct: 137 LLRELK---------KEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 79/280 (28%), Positives = 138/280 (49%), Gaps = 9/280 (3%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G + ++D+ Y + +L+ S SI G+ V L+G +G GKST++S R + + G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
DI ID ++ + L+ RK G + Q+ +F+G+ N+ DE+I+ +
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLD-PYGKWSDEEIWKVAEEVGL 117
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
S I Q P Q L G LS G KQ + +AR+++ ILLLDE ++ LD + +++
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL-QTSDFYNRLFTM 493
++ L++A TVIL HR+ ++ V+E+ +V + + LL + S F +
Sbjct: 178 RKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237
Query: 494 QNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRE 533
L+ + S + QI ++ EE EE ++
Sbjct: 238 DRLKLFPRRNSSKSKRKPRP---QIQALQ--EETEEEVQD 272
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 32/249 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + F Y +R L++ S + PG VAL+GP+GAGKS++ +LL R Y EG I
Sbjct: 2 LEVAGLSFRYGAR---RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLL-FSCSIRNNICYGNEAA----SEAEIVEVSKK 1000
+ G ++ L ++G+V Q+P L S+R N+ Y AA S AE +
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAE-----AR 110
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
A I + ++ L G +K +L+GG ++R+ IAR LL RPA++LLDE T LD S
Sbjct: 111 ARIAELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITV---AHRLATVINSDVIVVMDKGEVVEMGSHS 1117
I + + AL +R ++V H + + D +VV+ +G V+ G+ +
Sbjct: 169 AAITAHVRAL-----------ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAA 217
Query: 1118 TLVAESQGV 1126
L + G
Sbjct: 218 ELRGATGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-29
Identities = 59/245 (24%), Positives = 116/245 (47%), Gaps = 37/245 (15%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKST----VISLVARFYDP 311
+++ ++ + + ++ ++ S + G+++ +VG SG GKST ++ L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 312 SNGDILIDSLNIKDLDLKSLR----KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYN 367
++G++++D ++ L + +R K I + Q+P SL + +G+ QI
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP---MTSLNPVMTIGD------QI-- 114
Query: 368 ASMMANAHSFISQLPDQYSTE--LGQRGV-----------QLSGGQKQRIAIARAIVKNP 414
+ H S+ + L Q G+ QLSGG +QR+ IA A+ P
Sbjct: 115 REALR-LHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 415 PILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
+L+ DE T+ALD ++ + + L+ + G V+ I H + + AD + V+ G++
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233
Query: 472 TETGT 476
ETG
Sbjct: 234 VETGP 238
|
Length = 539 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 26/228 (11%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL----RKN 334
L+I G++ ++G SG GKST + ++ R +P+ G I ID NI L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG------NMDADDEQIYNASMMANAHSFISQLPDQYST 387
IG V Q+ +LF +++ N +G E+ + + + PD+
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE--- 129
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--AMQGR 445
LSGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L++ A +
Sbjct: 130 --------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLF 491
T++ I H + + D I +++ G++ + GT +L+ ++ Y F
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 22/211 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN--- 313
+++R++ Y D+ L S+ IP ++ A +G SGCGKST++ R D +
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 314 --GDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDE 363
G+I +D NI K +D+ LR+ +G V Q P+ F S+ +N+ G N +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ S+ A L D+ L + LSGGQ+QR+ IARAI P +LLLDE T
Sbjct: 143 EAVERSLRGAA------LWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 424 SALDSESEKLVQEALERAMQGRTVILIAHRM 454
SALD S ++E + T++++ H M
Sbjct: 197 SALDPISTLKIEELITELKSKYTIVIVTHNM 227
|
Length = 272 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 26/229 (11%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL----RKN 334
SL + G++ ++G SG GKST++ + R +P++G +LID +I + K L RK
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG------NMDADDEQIYNASMMANAHSFISQLPDQYST 387
I V Q +L ++++N+ G +E+ A + + + PD
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---- 159
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--AMQGR 445
+LSGG +QR+ +ARA+ +P ILL+DEA SALD + +Q+ L R A +
Sbjct: 160 -------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFT 492
T++ I H + + D IA+++DG++ + GT +L ++ Y R F
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-29
Identities = 71/267 (26%), Positives = 126/267 (47%), Gaps = 43/267 (16%)
Query: 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN--- 941
+E +N+ + + V + + S ++EPG + +VG SG+GKS LAL L P
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKS-TLALALMGLLPEGGR 64
Query: 942 --EGIILIDGKGIKEYN---LRRLR-SQIGLVQQEPL-----LFSCSIRNNIC------- 983
G +++DG+ + + +R+LR +I ++ Q+P+ + + I + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT--IGDQIREALRLHG 122
Query: 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043
G+ A + VE+ ++ + D QLSGG +QR+ IA L +P
Sbjct: 123 KGSRAEARKRAVELLEQVGLPD---------PERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVI 1102
+++ DE T+ALD ++ I+ L+ L + + + H L V +D +
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRE--------LGMAVLFITHDLGVVAELADRV 225
Query: 1103 VVMDKGEVVEMGSHSTLVAESQGVYSR 1129
VVM KGE+VE G +++ Q Y+R
Sbjct: 226 VVMYKGEIVETGPTEEILSNPQHPYTR 252
|
Length = 539 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 90/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PSN- 313
ID RDV F Y D LKG S+ I +VA +G SGCGKST + L R D P+
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 314 --GDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG---NMDADDEQIY 366
G+I ID NI K + + LRKN+G V Q P+ F S+ +N+ G N D+ I
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
+ L D+ +L + LSGGQ+QR+ IARA+ +P +LL+DE SAL
Sbjct: 121 QRVEETLKGA---ALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177
Query: 427 DSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDF 486
D S V+E + + T++++ H M A V D +T+ F
Sbjct: 178 DPISTAKVEELIHELKKDYTIVIVTHNMQ------QAARVSD-------------KTAFF 218
Query: 487 YNRLFTMQNLRPIDDSRTKASTVESTSTEQQIS 519
Y M + DD++ + E +T+ I+
Sbjct: 219 Y-----MGEMVEYDDTKKIFTNPEKEATQNYIT 246
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 6e-29
Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 16/236 (6%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I ++V F Y S LK S +IP G+ ++VG +G GKST+ L+ +G+I
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQI---YNASMMAN 373
++ I D + + LRK+IG V Q P DN VG++ D +A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNP--------DNQFVGSIVKYDVAFGLENHAVPYDE 118
Query: 374 AHSFISQ-LPDQYSTELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
H +S+ L E LSGGQKQR+AIA + NP +++LDEATS LD ++
Sbjct: 119 MHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 432 KLVQEALERAMQGR--TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
+ + + + + T+I I H +S + AD + V+ G V + GT + ++
Sbjct: 179 QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234
|
Length = 269 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-29
Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 41/267 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ YP L + +L+I G VA++GPSGAGKS++L L DP G I
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 946 LIDGKGIKEYN---LRRLRSQIGLV-QQEPLLFSCSIRNNICYG--------------NE 987
L +G I + LR+LR IG++ QQ L+ S+ N+ G
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
+A+ ++ ++ I D ++ LSGGQ+QR+AIAR L+++P I+L
Sbjct: 122 KEDKAQALDALERVGILDK-----------AYQRASTLSGGQQQRVAIARALVQQPKIIL 170
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106
DE ++LD ES + ++ L+ +N + T I H++ +D I+ +
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGI--------TVIVNLHQVDLAKKYADRIIGLK 222
Query: 1107 KGEVVEMGSHSTLVAES-QGVYSRLYQ 1132
G +V G S L E+ +Y
Sbjct: 223 AGRIVFDGPASELTDEALDEIYGNEIS 249
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 29/221 (13%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
F L++PAG++VA++G SG GKST+++L+A F P++G+ILI+ ++ + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP--PAERPVSM 75
Query: 338 VSQEPSLFTG-SLMDNIKVG-----NMDADD-EQIYNASMMANAHSFISQLPDQYSTELG 390
+ QE +LF ++ NI +G ++A+ E++ A+ F+ +LP +
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE------ 129
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE-----RAMQGR 445
LSGGQ+QR+A+AR +V+ PILLLDE SALD L E L +
Sbjct: 130 -----LSGGQRQRVALARCLVREQPILLLDEPFSALD---PALRAEMLALVSQLCDERKM 181
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485
T++++ H AD + +++G++ G+ LL
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
|
Length = 231 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 73/238 (30%), Positives = 112/238 (47%), Gaps = 32/238 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ Y L+ SL I+ G L+GPSG GK+++L L+ F P G I
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVS 998
L+DGK I NL + + V Q LF ++ NI +G +A + + E
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ + + P QLSGGQ+QR+AIAR L+ P ++LLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ + L+ L + T + V H + SD I VM+KG++ ++G+
Sbjct: 165 LRKDMQLELKRLQKELG--------ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 20/219 (9%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNIKD 325
++ +K ++ I ++ A++G SGCGK+T++ + R D P G I +I D
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 326 --LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSF 377
LD+ RK +G V Q+P+ F S+ DN+ G ++I S+ A
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAA--- 131
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L D+ +EL + G +LSGGQ+QR+ IARA+ P ++LLDE TSALD + + +++
Sbjct: 132 ---LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 438 LERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
LE + T++++ H + + AD IA + G++ E G
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 19/233 (8%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNI-- 323
L +K L IP ++ A +G SGCGKST++ R D P G + N+
Sbjct: 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNI----KVGNMDADDEQIYNASMMANAHSFIS 379
D+D +R+ IG V Q+P+ F S+ DNI ++ D +++ S+ A
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAA----- 136
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE 439
L D+ +L Q G+ LSGGQ+QR+ IARAI P ++L+DE SALD S ++E +
Sbjct: 137 -LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195
Query: 440 RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491
+ T+I++ H M +DM A + ++TE G + L D ++F
Sbjct: 196 ELKEQYTIIIVTHNMQQAARVSDMTAFF-NVELTEGGGRYGYLVEFDRTEKIF 247
|
Length = 264 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 66/196 (33%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I F+N+ YP E L + S I G V L GPSGAGKS++L L+ P G I
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 946 LIDGKGI---KEYNLRRLRSQIGLVQQE-PLLFSCSIRNNICYGNEAA--SEAEI----V 995
L++G + K + LR QIG+V Q+ LL ++ N+ EI
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
EV + +LP QLSGG++QR+AIAR ++ +PA++L DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1056 DAESERVIVSALEALN 1071
D + I+ E +N
Sbjct: 169 DPDLSWEIMRLFEEIN 184
|
Length = 223 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 67/211 (31%), Positives = 116/211 (54%), Gaps = 29/211 (13%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
F L++ G++VA++G SG GKST+++L+A F +P++G I ++ + L ++ +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSM 74
Query: 338 VSQEPSLFTG-SLMDNIKVG-----NMDA-DDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ QE +LF ++ NI +G ++A E++ +A+ ++ +LP+Q
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ------ 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-----AMQGR 445
LSGGQ+QR+A+AR +V+ PILLLDE SALD L +E L + + R
Sbjct: 129 -----LSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLREEMLALVKQLCSERQR 180
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETG 475
T++++ H +S A IAVV G++
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-28
Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 20/219 (9%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD 325
D ILK +L IP + AL+G SGCGKST I + R D G I +D ++I D
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 326 --LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG----NMDADD--EQIYNASMMANAHSF 377
+D+ LRK +G V Q+P+ F S+ DN+ G D +D E+ S+ A A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAA--- 131
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L D+ +L + + LSGGQ+QR+ IAR I +P ++L+DE SALD S +++
Sbjct: 132 ---LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 438 LERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+ + + T++++ H M + + +G++ E+G
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 70/249 (28%), Positives = 125/249 (50%), Gaps = 28/249 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I F+N+ F Y S T L + S I G ++VG +G+GKS++ L++ G I
Sbjct: 8 IVFKNVSFQYQSDASFT-LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPL-LFSCSI-RNNICYG--NEAASEAEIVEVSKKA 1001
+ + I + N +LR IG+V Q P F SI + ++ +G N A E+ +A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1002 ----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
++ + P+ LSGGQKQR+AIA L P++++LDEATS LD
Sbjct: 127 LKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117
++ + ++ + + + + T I++ H L+ + +D ++VM+KG V + G+ +
Sbjct: 176 DARQNLLDLVRKVKSEHN--------ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPT 227
Query: 1118 TLVAESQGV 1126
+ ++ +
Sbjct: 228 EIFDHAEEL 236
|
Length = 269 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 2e-28
Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 15/207 (7%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDLDLKSLRKNI 335
++ I K+ AL+G+SGCGKST + R D +G + I+ ++K+ D+ +LRKN+
Sbjct: 22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81
Query: 336 GAVSQEPSLFTGSLMDNI----KVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTEL 389
G V Q+P++F S+ +NI K+ M + D+E+ + F ++ +L
Sbjct: 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLF-----EEVKDKL 136
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVIL 449
Q + LSGGQ+QR+ IARA+ P +LLLDE TSALD S +++E L+ ++I+
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196
Query: 450 IAHRMSTIVN-ADMIAVVEDGQVTETG 475
+ H M AD A G++ E G
Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 29/220 (13%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
L N SL++E G ++GP+G+GKS +L + F P+ G IL++GK I NL +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 963 QIGLVQQEPLLF-SCSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSLPDGYD 1015
I V Q LF ++ NI YG ++ E +++E+++ I D
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI-----------D 120
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
++ K LSGG++QR+AIAR L+ P I+LLDE SALD ++ + L+ + +
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 1076 SCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMG 1114
T + V H +D + +M G+++++G
Sbjct: 181 --------VTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 44/241 (18%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + + F YP LK S S+ G+ VA+VG +G GKST+ L+ P G I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD-------------- 362
+ + + + + +R+ +G V Q P DN VG DD
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNP--------DNQFVGATVQDDVAFGLENIGVPREE 116
Query: 363 --EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
E++ A F+++ P + LSGGQKQR+AIA + P I++LD
Sbjct: 117 MVERVDQALRQVGMEDFLNREPHR-----------LSGGQKQRVAIAGVLALQPDIIILD 165
Query: 421 EATSALDSESEKLVQEALE-----RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475
EATS LD +E LE + +G TV+ I H + AD + V+ G++ E G
Sbjct: 166 EATSMLDPRGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 476 T 476
T
Sbjct: 223 T 223
|
Length = 279 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-28
Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 42/238 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++R + ++ + ++ L+I G+ + L+G SGCGK+TV+ L+A F P +G I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI-------KVGNMDADDEQIYNA 368
++D +I + + +++ V Q +LF ++ +N+ K + ++ A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEI-TPRVMEA 128
Query: 369 SMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
M QL E QR QLSGGQ+QR+AIARA+V P +LLLDE+ SALD
Sbjct: 129 LRMV-------QL-----EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 428 SESEKLVQ---EALERAMQGRTVILIAH------RMSTIVNADMIAVVEDGQVTETGT 476
+ K +Q +AL+R + G T + + H MS D I V+ DG++ + GT
Sbjct: 177 YKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMS-----DRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 38/243 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ + L++ SL I G VAL+GPSG+GK+++L L+ P+ G I
Sbjct: 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVS 998
L G+ + ++ +G V Q LF ++ +N+ +G +E EAEI
Sbjct: 60 LFGGEDATDVPVQE--RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI---- 113
Query: 999 KKANIHDFI-----SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
+A +H+ + L D Y QLSGGQ+QR+A+AR L P ++LLDE
Sbjct: 114 -RAKVHELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
ALDA+ + + L L+ + T + V H + +D +VVM+KG + +
Sbjct: 166 ALDAKVRKELRRWLRRLHDELH--------VTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217
Query: 1113 MGS 1115
+G+
Sbjct: 218 VGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-28
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+I I +V + + L SL I +G++VAL+G SG GKST++ ++A P G
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 316 ILIDSLNIKDLDLKSLRK-NIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIYNAS 369
I ++ + D+ ++R +G V Q +LF ++ DNI KV + A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSE-----AE 113
Query: 370 MMANAHSFI-----SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ A + L D+Y QLSGGQ+QR+A+ARA+ P +LLLDE
Sbjct: 114 IRARVEELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFG 166
Query: 425 ALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
ALD++ K ++ L + G T + + H + AD + V+ G++ + G
Sbjct: 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 57/231 (24%), Positives = 112/231 (48%), Gaps = 27/231 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ IR++ Y + + SL++ G++ L+G +G GK+T + ++ P++G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKV-----GNMDADDEQIYNASM 370
I+ +I+ D K+ R+++G Q +LF ++ ++++ G + + +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110
Query: 371 MANAHSFISQLPDQYSTELGQ----RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
+ L L R LSGG K+++++A A++ P +LLLDE TS L
Sbjct: 111 KEEVELLLRVL------GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164
Query: 427 DSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
D S + + + + +GR++IL H M D IA++ DG++ G+
Sbjct: 165 DPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 37/253 (14%)
Query: 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--P 940
G+I +++ Y + L +L IE AL+GPSG GKS+ L L R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 941 N---EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAA 989
+ EG +L+DG+ I + ++ +LR ++G+V Q+P F SI +N+ YG +
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 990 SEAEIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
EIVE S K A + D + D + LSGGQ+QR+ IAR L P ++L+
Sbjct: 118 KLDEIVEKSLKGAALWD---EVKDRLK----KSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMD 1106
DE TSALD S I ++ EL T + V H + A+ I SD
Sbjct: 171 DEPTSALDPISTLKIEELIQ----------ELKKDYTIVIVTHNMQQASRI-SDKTAFFL 219
Query: 1107 KGEVVEMGSHSTL 1119
GE+VE G L
Sbjct: 220 NGEIVEFGDTVDL 232
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ F ++ + +TVL+ + + G KVAL+GPSG+GKS++L +L+ +EG I
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 946 LIDGKGI-------------KEYNLRRLRSQIGLVQQEPLLF--SCSIRN------NICY 984
++G+ + E +LR++R++IG+V Q LF + N +
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117
Query: 985 GNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044
A +E +E+ + D +P QLSGGQ+QR+AIAR L RP
Sbjct: 118 MARAEAEKRAMELLDMVGLADKADHMP-----------AQLSGGQQQRVAIARALAMRPK 166
Query: 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIV 1103
+ML DE TSALD E +V E LN E T + V H + +D +
Sbjct: 167 VMLFDEVTSALDPE----LVG--EVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVC 218
Query: 1104 VMDKGEVVEMG 1114
DKG +VE G
Sbjct: 219 FFDKGRIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (285), Expect = 5e-28
Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 15/233 (6%)
Query: 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
+D I IR V F Y +LK ++ P ++ A++G SGCGKST++ + R D
Sbjct: 1 MDPKIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIV 57
Query: 313 NG-----DILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN--MDADDE 363
+G +L+D+ NI +LD+ +LRK +G V Q+P+ F S+ DN+ G + +
Sbjct: 58 SGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ 117
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ + + + L D+ L + G+ LSGGQ+QR+ IAR + P ++L+DE
Sbjct: 118 SRLDEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 424 SALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNA-DMIAVVEDGQVTETG 475
SALD S ++E ++ Q T+ ++ H M A D + G + E G
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 5e-28
Identities = 62/251 (24%), Positives = 112/251 (44%), Gaps = 36/251 (14%)
Query: 257 IDIRDVCFAYP-SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-- 313
++++++ ++P + G S + G+++ +VG SG GKS + + N
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 314 ---GDILIDSLNIKDLDLKSLRKN----IGAVSQEPSLFTGSLMDNIKVGN-----MDAD 361
G+IL D ++ L K LRK I + Q+P SL + +G+ +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM---TSLNPVMTIGDQIAEVLRLH 118
Query: 362 DEQIYNASMMANAHSFISQ--LPD------QYSTELGQRGVQLSGGQKQRIAIARAIVKN 413
+ + A + +PD Y +LSGG +QR+ IA A+ N
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYP-------HELSGGMRQRVMIAMALALN 171
Query: 414 PPILLLDEATSALDSESEKLVQEALE--RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470
P +L+ DE T+ALD + + + L+ + +G +ILI H + + AD +AV+ G+
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGR 231
Query: 471 VTETGTHHSLL 481
+ E G +
Sbjct: 232 IVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 8e-28
Identities = 80/275 (29%), Positives = 130/275 (47%), Gaps = 61/275 (22%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ YP+ L N +L I PG VA++GPSGAGKS++L + R +P+ G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 946 LIDGKGI---KEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAA-----------S 990
L++G I + LR+LR +IG++ Q L+ ++ N+ +G S
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 991 EAEIV---EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
E + ++ + D D QLSGGQ+QR+AIAR L ++P ++L
Sbjct: 120 EEDKERALSALERVGLADKAYQRAD-----------QLSGGQQQRVAIARALAQQPDLIL 168
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--------- 1098
DE ++LD ++ + ++ L+ +N + ITV +IN
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKRINKED-----------GITV------IINLHQVDLAKK 211
Query: 1099 -SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132
+D IV + GE+V G+ S L E V +Y
Sbjct: 212 YADRIVGLKAGEIVFDGAPSELDDE---VLRHIYG 243
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-28
Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 27/245 (11%)
Query: 259 IRDVCFAYPSRPDQLI--------LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
+R++ Y SR + + S + G+ + LVG SG GKST+ ++A
Sbjct: 283 VRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 311 PSNGDILID--SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN-------MDAD 361
PS+G I+ D L++ +L+ LR+ I V Q+P SL + VG+ +
Sbjct: 343 PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP---YSSLNPRMTVGDILAEPLRIHGG 399
Query: 362 DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
+ +A + LP ++ L + +LSGGQ+QR+AIARA+ P +L+LDE
Sbjct: 400 GSGAERRARVAELLELVG-LPPEF---LDRYPHELSGGQRQRVAIARALALEPKLLILDE 455
Query: 422 ATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478
SALD + V L+ + G T + I+H ++ + AD +AV+ DG++ E G
Sbjct: 456 PVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515
Query: 479 SLLQT 483
+ +
Sbjct: 516 KVFEN 520
|
Length = 539 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 9e-28
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR-- 332
+ SL + G++ ++G SG GKST++ L+ R +P+ G+IL+D +I L LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 333 --KNIGAVSQEPSLFTG-SLMDNI----KVGNMDADD------EQIYNASMMANAHSFIS 379
K I V Q +L ++++N+ +V + + E + + A + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE 439
+L SGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L
Sbjct: 164 EL---------------SGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208
Query: 440 R--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS-LLQTSDFYNRLFT 492
A +T++ I H + + D IA+++DG++ + GT LL ++ Y R F
Sbjct: 209 ELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFV 265
|
Length = 386 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-27
Identities = 77/296 (26%), Positives = 149/296 (50%), Gaps = 23/296 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-SNGD 315
I I++ F++ S+ ++ L +L +P G +VA+VGS+G GK+++IS + P S+
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
++I R + V Q +F ++ DNI G+ D E+ A +
Sbjct: 675 VVI-------------RGTVAYVPQVSWIFNATVRDNILFGS-PFDPERYERAIDVTALQ 720
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV- 434
+ LP TE+G+RGV +SGGQKQR+++ARA+ N + + D+ SALD+ + V
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ ++ ++G+T +L+ +++ + D I +V +G + E GT+ L + +L M+
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL--ME 838
Query: 495 NLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI 550
N +++ E+ E + + + + + +S+ ++ +GK I
Sbjct: 839 NAGKMEEYVE-----ENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLI 889
|
Length = 1622 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 87/265 (32%), Positives = 127/265 (47%), Gaps = 41/265 (15%)
Query: 873 APESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLA 932
A S +I+ +N+ F Y + L N +L I A +GPSG GKS++L
Sbjct: 1 AAMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLR 57
Query: 933 LLLRFYD--PN---EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG 985
R Y+ P EG IL+DG+ I + ++ LR+++G+V Q+P F SI +NI +G
Sbjct: 58 TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 986 ---NEAASEAEIVEVSKKANIHDFISSLPDG--YDTV---VGEKGCQLSGGQKQRIAIAR 1037
E S AE+ E + A L ++ V + + G LSGGQ+QR+ IAR
Sbjct: 118 VRLFEKLSRAEMDERVEWA--------LTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169
Query: 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL---A 1094
+ RP ++LLDE SALD S +E L EL T + V H + A
Sbjct: 170 GIAIRPEVLLLDEPCSALDPIS----TGRIEEL------ITELKQDYTVVIVTHNMQQAA 219
Query: 1095 TVINSDVIVVMDKGEVVEMGSHSTL 1119
SD M GE++E G+ T+
Sbjct: 220 RC--SDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 20/233 (8%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD 325
D L SL ++ AL+G SGCGKST + + R D G+IL+D NI D
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77
Query: 326 --LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG---NMDADDEQIYNASMMANAHSFISQ 380
+D+ LR+ +G V Q+P+ F S+ +N+ G N D + + H+
Sbjct: 78 PHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA---A 134
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
L D+ L + + LSGGQ+QR+ IARA+ P +LL+DE SALD + + ++E +
Sbjct: 135 LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL------QTSDF 486
T+I++ H M +D+ A G++ E G + QT D+
Sbjct: 195 LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQTEDY 247
|
Length = 253 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 38/232 (16%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
+ IL SLS+P GK+ AL+G +GCGKST++ AR P +G + + I L +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKV---------------GNMDADDEQIYNASMMANAH 375
L + + + Q G I V G + A+D N +M
Sbjct: 74 LARRLALLPQHHLTPEG-----ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAM---EQ 125
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESE 431
+ I+ L D+ T+ LSGGQ+QR +A + ++ P++LLDE T+ LD E
Sbjct: 126 TRINHLADRRLTD-------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELM 178
Query: 432 KLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+L++ E QG+TV+ + H ++ D + V+ +G V GT ++
Sbjct: 179 RLMR---ELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-27
Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 31/322 (9%)
Query: 806 VALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITEL-WTLIPTVISAIT---VLAPAFE 861
VAL AV + + D +A+ SL + +I ++P VIS+I V
Sbjct: 554 VALITFAVYVTVDENNILDAEKAF--VSLALFNILRFPLNILPMVISSIVQASVSLKRLR 611
Query: 862 ILDRKTEIEPDAPE--SSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919
I E+EPD+ E + + G I N F + +R LN + I G VA+
Sbjct: 612 IFLSHEELEPDSIERRTIKPGEGNS-ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAV 669
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979
VG G GKSS+L+ LL D EG + + G + V Q+ + + S+R
Sbjct: 670 VGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLR 716
Query: 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
NI +G +A +E +V + + + LP G T +GEKG LSGGQKQR+++AR +
Sbjct: 717 ENILFG-KALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099
I L D+ SA+DA + I + P+ G L ++ T+I V H ++ +
Sbjct: 776 YSNADIYLFDDPLSAVDAHVGKHIFE--HVIGPE----GVLKNK-TRILVTHGISYLPQV 828
Query: 1100 DVIVVMDKGEVVEMGSHSTLVA 1121
DVI+VM G++ EMGS+ L+
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQ 850
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 33/241 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ Y +NN +L+I G + L+GPSG+GK++ + ++ R +P G I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICY--GNEAASEAEIVEVSKKAN 1002
IDG+ I+E + LR +IG V Q+ LF ++ NI + +I +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RER 113
Query: 1003 IHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ ++ L +LSGGQ+QR+ +AR L P ++L+DE ALD +
Sbjct: 114 ADELLALVGLDPA--EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMDKGEVVEMG 1114
+ + L + T + V H RLA D I +M GE+V++G
Sbjct: 172 DQLQEEFKRLQQE--------LGKTIVFVTHDIDEAFRLA-----DRIAIMKNGEIVQVG 218
Query: 1115 S 1115
+
Sbjct: 219 T 219
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 2e-27
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 80/244 (32%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
E +N+ Y R TVL++ SL IE G V ++GP+GAGKS++L L P+ G IL
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 947 IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
+DGK + + + L +I V Q + +
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 1007 ISSLPDGYDTVVGEKGC-QLSGGQKQRIAIARTLLKRPAIMLLDEATSALD--------- 1056
++ +LSGG++QR+ +AR L + P I+LLDE TS LD
Sbjct: 91 A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 1057 ------AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
E + +V L LN LA+R A R ++++ G +
Sbjct: 139 LLRRLARERGKTVVMVLHDLN--------LAAR-----YADR---------VILLKDGRI 176
Query: 1111 VEMG 1114
V G
Sbjct: 177 VAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 31/210 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++ ++ +Y +RP +L+ SLS+ G++ AL+G +G GKST++ + PS+G+I
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG---------SLMDNIKVGNMD----ADDE 363
I ++ + R IG V Q+ S+ L K G D E
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
++ A + ++G+ LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 119 KVDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 424 SALDSESEKLVQEAL-ERAMQGRTVILIAH 452
+ +D +K + + L E +G+TV+++ H
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197
|
Length = 254 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 10/188 (5%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNI-KDLDL 328
LK +L IPA ++ AL+G SGCGKST++ + R D G + +D +I ++D+
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQYS 386
LR +G V Q+P+ F S+ +N+ G D+++ + + + + L D+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG--AALWDEVK 136
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
L LSGGQ+QR+ IAR I P ++L+DE TSALD + ++E +E + T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 447 VILIAHRM 454
++++ H M
Sbjct: 197 IVIVTHSM 204
|
Length = 249 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-27
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 39/244 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I N+K + + L++ SL I+ G VAL+GPSGAGKS++L ++ P+ G I
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 946 LIDGKGIKEYNLRRLRSQ---IGLVQQEPLLF-SCSIRNNICYG----NEAASEAEIVEV 997
++G+ + ++ L + +G V Q LF ++ +NI +G E SEAEI
Sbjct: 60 RLNGRVLF--DVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI--- 114
Query: 998 SKKANIHDFI-----SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
+A + + + L D Y QLSGGQ+QR+A+AR L P ++LLDE
Sbjct: 115 --RARVEELLRLVQLEGLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPF 165
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA-TVINSDVIVVMDKGEVV 1111
ALDA+ + + L L+ + T + V H + +D +VV+++G +
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLG--------VTTVFVTHDQEEALELADRVVVLNQGRIE 217
Query: 1112 EMGS 1115
++G
Sbjct: 218 QVGP 221
|
Length = 345 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 39/210 (18%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
YP+ + LK +L+I G+ VA++G SG GKST++ + R +PS+G IL++ +I
Sbjct: 11 YPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITK 68
Query: 326 L---DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
L L+ LR+ IG + Q +L ++++N+ G + L
Sbjct: 69 LRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRL--------------GYKPTWRSL 114
Query: 382 PDQYSTE-----------LG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
++S E +G QR QLSGGQ+QR+AIARA+ + P ++L DE +
Sbjct: 115 LGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIA 174
Query: 425 ALDSESEKLVQEALERAMQ--GRTVILIAH 452
+LD ++ K V + L+R + G TVI+ H
Sbjct: 175 SLDPKTSKQVMDYLKRINKEDGITVIINLH 204
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 30/199 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ +Y +RP VL + SL +E G AL+GP+GAGKS++L +L P+ G I
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 946 LIDGKGIKEYNLRRLRSQIGLV-QQEPLLFS------------CSIRNNICYGNEAASEA 992
I GK +++ RR R +IG V Q+ + S + +
Sbjct: 62 KIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
++ E ++ + D +GE LSGGQKQR+ +AR L + P ++LLDE
Sbjct: 119 KVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1053 SALDAESERVIVSALEALN 1071
+ +D ++ I L+ L
Sbjct: 168 TGVDVAGQKEIYDLLKELR 186
|
Length = 254 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 3e-27
Identities = 74/247 (29%), Positives = 128/247 (51%), Gaps = 27/247 (10%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ F Y +V LN S I G V+++G +G+GKS+ L+ ++ EG +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSKKA 1001
IDG+ + N+ LR +IG+V Q P ++ +++ +G N+ E+++ +A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1002 ----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
N+ DF + P +LSGGQKQR+A+A + RP I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117
+ I+ + + K + T +++ H L +SD I+VM GE+++ + S
Sbjct: 174 TGRQEIMRVIHEIKEK--------YQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPS 225
Query: 1118 TLVAESQ 1124
L A S+
Sbjct: 226 ELFATSE 232
|
Length = 277 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-27
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 47/208 (22%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+ G S SI G+ + LVG SGCGKST+ L+ +P++G+IL + +I L + R+
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRE 87
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+ L++ KVG E+ + P +
Sbjct: 88 RVLE-----------LLE--KVG----LPEEFLY------------RYPHE--------- 109
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQEALERAMQGRTVIL 449
LSGGQ+QRI IARA+ NP +++ DE SALD ++ L+++ L+ + G T +
Sbjct: 110 --LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD-LQEEL-GLTYLF 165
Query: 450 IAHRMSTIVN-ADMIAVVEDGQVTETGT 476
I+H +S + +D IAV+ G++ E G
Sbjct: 166 ISHDLSVVRYISDRIAVMYLGKIVEIGP 193
|
Length = 268 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-27
Identities = 109/529 (20%), Positives = 222/529 (41%), Gaps = 56/529 (10%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
+ P L L+ S+S+P GK+ ++G++G GKST++ + ++ S G + +
Sbjct: 668 FELEPKVL-LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------ 720
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
++I V Q+ + ++ NI + + D ++ +A ++ + ++QL
Sbjct: 721 -------RSIAYVPQQAWIMNATVRGNILFFD-EEDAARLADAVRVSQLEADLAQLGGGL 772
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAMQG 444
TE+G++GV LSGGQK R+++ARA+ N + LLD+ SALD+ E++V+E A+ G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 445 RTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRT 504
+T +L H++ + AD + + DG+V +G+ ++TS + ++ + +
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDA 892
Query: 505 KASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI-------------- 550
A E + E +E E + G+ T
Sbjct: 893 DAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYV 952
Query: 551 -FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA 609
+ R FC G V A F +++ ++ GV + + + +
Sbjct: 953 AYLR--FCGG-----LHAAGFVLATF-AVTE----LVTVSSGV-WLSMWSTRSFKLSAAT 999
Query: 610 FSLVGLFSLFTHTLQHYFFGVVGEKAM----TNLRRTLYTGVLRNEIAWFEKPQNDAGSL 665
+ V L + T + +AM N+ R L V R +++F+ G +
Sbjct: 1000 YLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRI 1057
Query: 666 TSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG--- 722
+R D ++ + ++QC+ SI + +V+ V A++PC ++
Sbjct: 1058 LNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTS---ASQPFVLVALVPCGYLYYRL 1114
Query: 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKA 771
+ + + A + +L E+ T+ ++ ++Q+A
Sbjct: 1115 MQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEA 1163
|
Length = 1560 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 22/230 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++R+V + L SL IP+G++VAL+G SG GK+T++ L+A P +G I
Sbjct: 3 IEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG-NMDADDEQIYNASMMANA 374
L + D+ ++ +N+G V Q +LF ++ DN+ G + E+ A + A
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 375 HSFI-----SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
H + L D+Y QLSGGQ+QR+A+ARA+ P +LLLDE ALD++
Sbjct: 118 HELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 430 SEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
K ++ L R T + + H + AD + V+ G++ + GT
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF N+ YP L+ ++ I G V LVGPSGAGKS++L L+ + P G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 946 LIDGKGIKEYNLRR---LRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
++G+ + + R LR +IG+V Q+ L + Y N A + E+ V +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP----DRNVYENVAFA-LEVTGVPPR-- 111
Query: 1003 IHDFISSLPDGYDTVVGEKG------CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+ +P + +VG +LSGG++QR+AIAR ++ P I++ DE T LD
Sbjct: 112 --EIRKRVPAALE-LVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
Query: 1057 AESERVIVSALEALN 1071
++ I++ L+ +N
Sbjct: 169 PDTTWEIMNLLKKIN 183
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 27/233 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ F Y E LN+ S ++ G ++++G +G+GKS+ + L+ + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSKKA 1001
+IDG + E N+ +R +IG+V Q P ++ +++ +G N+ E+ E +A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1002 ----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ DF P +LSGGQKQR+AIA + RP I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110
E ++ ++ + + T I++ H L V SD ++VM G+V
Sbjct: 174 EGRLELIKTIKGIRDD--------YQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 32/238 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE NI + S L++ +L++ G VAL+GPSG+GKS++L ++ P+ G I
Sbjct: 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVS 998
++G+ + R +IG V Q LF ++R+NI +G +A +A + E+
Sbjct: 58 RLNGQDATRVHARD--RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ + P+ QLSGGQ+QR+A+AR L P ++LLDE ALDA+
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ + S L L+ + T + V H + +D IVVM G++ ++GS
Sbjct: 165 VRKELRSWLRKLHDEVH--------VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 68/209 (32%), Positives = 104/209 (49%), Gaps = 23/209 (11%)
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNG 314
RDV Y ++ L L IP + A +G SGCGKST + + R D G
Sbjct: 23 RDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG 79
Query: 315 DILIDSLNIKD--LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-------NMDADDEQI 365
I +D +I D LD+ LR +G V Q+P+ F S+ +N+ G A+ ++I
Sbjct: 80 KITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEI 139
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
S+ L ++ L + G LSGGQ+QR+ IARAI +P ++L+DE SA
Sbjct: 140 VETSLRKAG------LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
Query: 426 LDSESEKLVQEALERAMQGRTVILIAHRM 454
LD + V+E ++ Q T++++ H M
Sbjct: 194 LDPIATAKVEELIDELRQNYTIVIVTHSM 222
|
Length = 267 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 65/193 (33%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNI--KDLD 327
L +L I K+ AL+G SGCGKST + + R D G++L+D NI KD+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSFISQL 381
+ LRK +G V Q+P+ F S+ DN+ G + ++I ++ A L
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAA------L 133
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D+ +L + ++LSGGQ+QR+ IAR I P ++L+DE TSALD S +++ +
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 442 MQGRTVILIAHRM 454
+ T++++ H M
Sbjct: 194 KKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 41/245 (16%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF---YDPNE 942
+E +++K++YP E L + + E G VAL+GP+GAGKS+ L L F P
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKST---LFLHFNGILKPTS 56
Query: 943 GIILIDGKGIKEYN---LRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEI- 994
G +LI G+ IK Y+ L +R +G+V Q P LF+ ++ ++ +G N S+ E+
Sbjct: 57 GEVLIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVE 115
Query: 995 ---VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
E K + F + P LSGGQK+R+AIA L +P I++LDE
Sbjct: 116 KRVKEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEP 164
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEV 1110
TS LD I+ L LN + T I H + V + +D + VM G++
Sbjct: 165 TSGLDPMGASQIMKLLYDLNKEG---------ITIIISTHDVDLVPVYADKVYVMSDGKI 215
Query: 1111 VEMGS 1115
++ G+
Sbjct: 216 IKEGT 220
|
Length = 275 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 34/216 (15%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKS 330
+L +L I G++V L G SG GK+T+++L+ G + + + + +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 331 LRKNIGAVSQEPSLFTGSL--MDNIKVG-----NMDADDEQIYNASMMA----NAHSFIS 379
LR+NIG + Q +L G L N+++ N+ + + +M+ H +
Sbjct: 80 LRRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH--LD 136
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE 439
P LSGGQKQR+AIARA+V P ++L DE T+ALDS+S + V E ++
Sbjct: 137 YYPHN-----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 440 R--AMQGRTVILIAH--RMSTIVNADMIAVVEDGQV 471
+ QG T++++ H R+ + AD I +EDG++
Sbjct: 186 KLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-26
Identities = 63/210 (30%), Positives = 104/210 (49%), Gaps = 15/210 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ +V YP L G ++SI AG+ V LVG SG GKST++ L+ + P++G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 317 LIDSLNIKDLDLKS---LRKNIGAVSQEPSLF-TGSLMDNIKVGN--MDADDEQIYNASM 370
++ ++ DL ++ LR+ IG V Q+ L ++ +N+ +I
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
A +S E LSGG++QR+AIARAIV +P IL+ DE T LD ++
Sbjct: 119 AALELVGLSHKHRALPAE-------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 431 EKLVQEALERAMQGRTVILIAHRMSTIVNA 460
+ L++ + T +++A +V+
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDT 201
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 19/194 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNIKD--LD 327
L ++SIP ++ AL+G SGCGKST++ R D P GDIL + NI D D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSFISQL 381
+ +LR+ IG V Q P+ F S+ +N+ G + I S+ A L
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA------L 135
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D+ L + LSGGQ+QR+ IAR + NP ++L+DE SALD + +++ +E
Sbjct: 136 WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 442 MQGRTVILIAHRMS 455
+ TVI++ H M
Sbjct: 196 KKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-26
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 13/239 (5%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
G++ +++ Y + VL N S I PG +V L+G +G+GKS++L+ LR + EG
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
I IDG L++ R G++ Q+ +FS + R N+ S+ EI +V+++ +
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL-DPYGKWSDEEIWKVAEEVGL 117
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
I P D V+ + GC LS G KQ + +AR++L + I+LLDE ++ LD + +VI
Sbjct: 118 KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVI 177
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122
L+ + C T I HR+ ++ +V+++ +V + S L+ E
Sbjct: 178 RKTLKQ---AFADC-------TVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 66/242 (27%), Positives = 111/242 (45%), Gaps = 54/242 (22%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
E +++ +Y P VL + S +++PG +A+VGP+GAGKS++L +L P G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 947 IDGKGIKEYNLRRLRSQIGLVQQEPLL---FSCSIRNNICYGN---------------EA 988
+ GK L + R +IG V Q + F S+R+ + G
Sbjct: 58 VFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 989 ASEA-EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
EA E V +S+ A+ I +LSGGQ+QR+ +AR L++ P ++L
Sbjct: 113 VDEALERVGLSELADRQ--IG---------------ELSGGQQQRVLLARALVQDPDLLL 155
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMD 1106
LDE + +D +++ I L L T + V H L V+ D +++++
Sbjct: 156 LDEPFAGVDPKTQEDIYELLRELR---------REGMTILVVTHDLGLVLEYFDRVLLLN 206
Query: 1107 KG 1108
+
Sbjct: 207 RT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-26
Identities = 68/218 (31%), Positives = 108/218 (49%), Gaps = 29/218 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS-----LNIKDLDLK 329
L G SL++ G++ AL+G +G GKST++ +++ Y P +G+ILID + +D
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD---- 79
Query: 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGN--------MDADDEQIYNASMMANAHSFISQ 380
+L I V QE SL S+ +NI +G +D +M A +++
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-------RKAMRRRARELLAR 132
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKLVQEALE 439
L + LS Q+Q + IARA+ + +L+LDE T+AL E+E+L
Sbjct: 133 LGL--DIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRR 190
Query: 440 RAMQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETGT 476
QG +I I+HR+ + AD I V+ DG+V T
Sbjct: 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228
|
Length = 500 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-26
Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ Y + L G SL++ G M L+G +G GK+T++ ++A PS+G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV----------GNMDADDEQIY 366
ID ++ + LR+ IG + QE ++ N V + + + +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVY-----PNFTVREFLDYIAWLKGIPSKEVKAR 110
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
++ + L D+ ++G LSGG ++R+ IA+A+V +P IL++DE T+ L
Sbjct: 111 VDEVLELVN-----LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 427 DSESEKLVQEALERAMQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETG 475
D E + L + R VIL H + + + +AV+ G++ G
Sbjct: 162 DPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 21/226 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNIKD--LD 327
+K S+ P + A++G SGCGKSTV+ + R +D PS G IL+D +I D +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 328 LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNM------DADDEQIYNASMMANAHSFISQ 380
S+R+ +G V Q+P+ F S+ DN+ G ++ ++I +S+ A
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVA------ 133
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
L D+ L ++LSGGQ+QR+ IAR I P ++L+DE SALD S ++E +E
Sbjct: 134 LWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE 193
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485
+ T+I++ H M +D A G + E G + T +
Sbjct: 194 LKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 50/245 (20%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ +N+ Y + L+ SL + PG+ L+GP+GAGK++++ +L P+ G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS----------CSIRNNICYGNEAASEAEIV 995
IDG+ + + ++LR +IG + QE ++ + I +A +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI---PSKEVKARVD 112
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
EV + N+ D +K LSGG ++R+ IA+ L+ P+I+++DE T+ L
Sbjct: 113 EVLELVNLGD-----------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV------IVVMDKGE 1109
D E ER+ L EL I L+T I DV + V++KG+
Sbjct: 162 DPE-ERIRFRNL---------LSELGEDRIVI-----LSTHIVEDVESLCNQVAVLNKGK 206
Query: 1110 VVEMG 1114
+V G
Sbjct: 207 LVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 77/253 (30%), Positives = 121/253 (47%), Gaps = 34/253 (13%)
Query: 244 SSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVIS 303
S K + + I +++V +Y +K IP GK+ AL+G SGCGKSTV+
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLR 57
Query: 304 LVARFYD--PS---NGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-- 354
+ R D G +L D ++ +D +R+ IG V Q+P+ F S+ +NI
Sbjct: 58 SLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117
Query: 355 ------VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408
G+MD ++ S+ A + D+ +L + G LSGGQ+QR+ IAR
Sbjct: 118 ARINGYTGDMD----ELVERSLRKAA------VWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIA--- 464
I P ++L+DE SALD S ++E + + T++++ H M V +DM A
Sbjct: 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN 227
Query: 465 --VVEDGQVTETG 475
VE G + G
Sbjct: 228 AEEVEGGSGGKVG 240
|
Length = 269 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 24/238 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ + F Y +R L S ++ G+ VAL+G +G GKST+ SL+ R Y G I
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMM---- 371
+ +++ +L + +G V Q+P+L S+ N++ Y+A++
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLR-----------YHAALHGLSR 106
Query: 372 ANAHSFISQLPDQY--STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
A A + I++L + + + +L+GG ++R+ IARA++ P +LLLDE T LD
Sbjct: 107 AEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 430 SEKLVQEALER--AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
S + + QG +V+ H + I D + V+ G+V G L +
Sbjct: 167 SRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATG 224
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 39/221 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I +V AYP + L+ S IP G+ V L G SG GKST++ L+ P+ G I
Sbjct: 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 317 LI---DSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMA 372
L+ D +K ++ LR+ IG V Q+ L ++ +N+ A
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV------------------A 101
Query: 373 NAHSFISQLPDQYSTE---------LGQRG----VQLSGGQKQRIAIARAIVKNPPILLL 419
I + P + L + QLSGG++QR+AIARAIV P +LL
Sbjct: 102 LPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLA 161
Query: 420 DEATSALDSE-SEKLVQEALERAMQGRTVILIAHRMSTIVN 459
DE T LD + S ++++ E G TV++ H +VN
Sbjct: 162 DEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVN 201
|
Length = 223 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 55/252 (21%)
Query: 886 IEFQNIKFNYPSR------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD 939
+E +N+K +P V ++ S I+ G + LVG SG GKS++ L+L +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 940 PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSK 999
P G IL +GK I + + R ++ LL E V + +
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV-----LELL-------------------EKVGLPE 100
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+F+ P +LSGGQ+QRI IAR L P +++ DE SALD
Sbjct: 101 -----EFLYRYPH-----------ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHST 1118
+ I++ L+ L + T + ++H L+ V SD I VM G++VE+G
Sbjct: 145 QAQILNLLKDLQEELG--------LTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196
Query: 1119 LVAESQGVYSRL 1130
+ + Y++
Sbjct: 197 VFSNPLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 26/205 (12%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+L L IPAG+ VA+VG SGCGKST++ L+A PS G++L + L R+
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA-----PLAEARE 81
Query: 334 NIGAVSQEPSLFT-GSLMDNIKVG---NMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
+ + Q+ L ++DN+ +G Q A +A+
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD--------------RA 127
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTV 447
+ LSGGQKQR+A+ARA++ P +LLLDE ALD+ + +Q+ +E Q G TV
Sbjct: 128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQV 471
+L+ H +S V AD + ++E+G++
Sbjct: 188 LLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 6e-26
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 33/260 (12%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G I I + AY + +L SL I AG+++AL+G SGCGK+T++ +A F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--- 57
Query: 315 DILIDSLNIKDLDLKSL---RKNIGAVSQEPSLFTG-SLMDNIKVG----NMDADD--EQ 364
L + I D DL ++ + + Q +LF + DN+ G M D E+
Sbjct: 58 AGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ +A + + LP QLSGG +QRIAIARAI P +LLLDE S
Sbjct: 118 VADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 425 ALDSESEKLVQE---ALERAMQGRTVILIAH-RMSTIVNADMIAVVEDGQVTETGTHHSL 480
ALD+ ++E AL + T++ + H + + AD +++DG++ G +L
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Query: 481 LQ--TSDFYNRLFTMQNLRP 498
F N+ P
Sbjct: 227 YDAPADGFAAEFLGAANILP 246
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 928 SSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRLRSQIGLVQQEPLLF-SCSIRNNICYG 985
S++L L+ P G IL+DG+ + + LR +IG+V Q+P LF ++R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 986 -NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044
+ ++A E ++ + DF+ P LSGGQKQR+AIAR LLK+P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 1045 IMLLDEATS 1053
++LLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 41/215 (19%)
Query: 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320
D+ +Y P +L+ S + G+ +A+VG +G GKST++ + P++G I +
Sbjct: 4 DLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 321 LNIKDLDLKSLRKNIGAVSQEPSL---FTGSLMDNIKVGNM----------DADDEQIYN 367
++ RK IG V Q S+ F S+ D + +G AD ++
Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE 115
Query: 368 A----SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
A + A I +L SGGQ+QR+ +ARA+V++P +LLLDE
Sbjct: 116 ALERVGLSELADRQIGEL---------------SGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 424 SALDSESEKLVQEALER-AMQGRTVILIAHRMSTI 457
+ +D ++++ + E L +G T++++ H + +
Sbjct: 161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-26
Identities = 74/246 (30%), Positives = 120/246 (48%), Gaps = 31/246 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +++ F Y + L SL I G K AL+GP+GAGKS++L L Y P G +
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEI---VEVS 998
+ G+ + N + +RS++GLV Q+P +FS ++ +++ +G N + E+ VE +
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 999 KKA-NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
KA + DF P LS GQK+R+AIA L P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116
+ ++ L+ L+ T I H + +D ++V+ +G V+ G
Sbjct: 172 RGQETLMEILDRLH---------NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK 222
Query: 1117 STLVAE 1122
S L E
Sbjct: 223 SLLTDE 228
|
Length = 274 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 25/220 (11%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-DLKSLRK 333
LK SL + G ++G +G GKS ++ +A F P +G IL LN KD+ +L ++
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL---LNGKDITNLPPEKR 71
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVG------NMDADDEQIYNASMMANAHSFISQLPDQYS 386
+I V Q +LF ++ NI G + + ++ + M I L ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG----IDHLLNRKP 127
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--G 444
LSGG++QR+AIARA+V NP ILLLDE SALD +++ ++E L++ + G
Sbjct: 128 E-------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 445 RTVILIAHRMSTI-VNADMIAVVEDGQVTETGTHHSLLQT 483
TV+ + H AD +A++ +G++ + G + +
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-25
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 299 STVISLVARFYDPSNGDILIDSLNIKDL-DLKSLRKNIGAVSQEPSLF-TGSLMDNIKVG 356
ST++ L+ P++G IL+D + L K LRK IG V Q+P LF ++ +N+ G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 357 -NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415
D + A F+ + P LSGGQKQR+AIARA++K P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 416 ILLLDEATS 424
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-----GDILIDSLNI--KDLD 327
LK S+ IP + AL+G SGCGKST I + R D G + I+ +I D+D
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSFISQL 381
+ LRKN+G V Q+P+ F S+ DN+ G N D + NA A L
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSA-------AL 140
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D+ S L + LSGGQ+QR+ IAR + P I+L DE TSALD S +++ +
Sbjct: 141 WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 442 MQGRTVILIAHRM 454
+ T++++ H M
Sbjct: 201 KKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 64/209 (30%), Positives = 112/209 (53%), Gaps = 12/209 (5%)
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI-----LIDSLNIK 324
L ++ IP G++ +VG GCGKS+++ + G + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPD 383
++ R ++ +Q+P L ++ +NI G+ ++Q Y A A + I LP
Sbjct: 72 ATRSRN-RYSVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPF 128
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAM 442
TE+G+RG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ L+QE + + +
Sbjct: 129 GDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFL 188
Query: 443 QG--RTVILIAHRMSTIVNADMIAVVEDG 469
Q RT++L+ H++ + +AD I ++DG
Sbjct: 189 QDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 30/214 (14%)
Query: 275 LKGFSLSIP---AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD----LD 327
L F+L I ++ + G+SG GKST++ +A P G I+++ + D ++
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 328 LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
L ++ IG V Q+ +LF ++ +N+ G + + D+
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFG-------------LKRKRNREDRISVDELL 116
Query: 387 -----TELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
L R QLSGG+KQR+A+ARA+ P +LLLDE SALD + L++
Sbjct: 117 DLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
Query: 441 AMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
+ VI + H +S AD I V+EDG++
Sbjct: 177 IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 30/205 (14%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
NI F+Y E+ L++ SL + G +AL G +GAGK+++ +L + G IL++G
Sbjct: 4 NISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 950 KGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNEAASE--AEIVEVSKKANIHD 1005
K IK + R IG V Q+ LF+ S+R + G + + V K +++
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
P LSGGQKQR+AIA LL +++ DE TS LD ++ +
Sbjct: 119 LKERHP-----------LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-- 165
Query: 1066 ALEALNPKSSSCGELASRTTQITVA 1090
ELA++ + V
Sbjct: 166 --------GELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 83/258 (32%), Positives = 127/258 (49%), Gaps = 35/258 (13%)
Query: 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-- 939
+K ++E +N+ Y E LN+ +L I AL+GPSG GKS+ L L R D
Sbjct: 1 MKIKMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 940 PN---EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEA 988
N EG +L+DGK I K+ ++ LR ++G+V Q+P F SI +N+ YG +
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
+IVE + K ++L D + + +LSGGQ+QR+ IART+ +P ++L+
Sbjct: 118 KELDKIVEWALKK------AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILM 171
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMD 1106
DE TSALD S I + EL T + V H + A+ + SD
Sbjct: 172 DEPTSALDPISTLKIEDLMV----------ELKKEYTIVIVTHNMQQASRV-SDYTAFFL 220
Query: 1107 KGEVVEMGSHSTLVAESQ 1124
G+++E + E Q
Sbjct: 221 MGDLIEFNKTEKIFLEPQ 238
|
Length = 251 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 18/212 (8%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKSL 331
L SL +PAG++ ++G+SG GKST+I V P++G +++D ++ L +L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADD---EQIYNASMMANAHSFISQLPDQYST 387
R+ IG + Q +L + ++ N+ + ++ D+ ++I A + D Y +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVAL-PLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GR 445
LSGGQKQR+AIARA+ NP +LL DEATSALD + + + E L+ + G
Sbjct: 140 -------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
T++LI H M + D +AV+ +G++ E GT
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF N+ YP L++ SL I G + L GPSGAGK+++L LL P+ G +
Sbjct: 2 IEFHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 946 LIDGKGIKEYNLRR---LRSQIGLVQQE-PLLFSCSIRNNIC------YGNEAASEAEIV 995
I G+ + R+ LR +IG+V Q+ LL ++ N+ E + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
++ + + P+ QLSGG++QR+AIAR ++ P ++L DE T L
Sbjct: 120 AALRQVGLEHKADAFPE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1056 DAESERVIVSALEALN 1071
D + I+ L+ LN
Sbjct: 169 DPDLSERILDLLKRLN 184
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ +V AYP L SL I G+ + L G SG GK+T++ L+ PS G +
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 317 LIDSLNIKDL---DLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDADD--EQIY 366
I ++ L L LR+ IG V Q+ L ++ +N+ +V + ++
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 367 NA-SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
A + H P+Q LSGG++QR+AIARAIV +PP+LL DE T
Sbjct: 120 AALRQVGLEHK-ADAFPEQ-----------LSGGEQQRVAIARAIVNSPPLLLADEPTGN 167
Query: 426 LDSESEKLVQEALERA-MQGRTVILIAH 452
LD + + + + L+R +G TVI+ H
Sbjct: 168 LDPDLSERILDLLKRLNKRGTTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 49/194 (25%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
+NI + + +L++ +L IE G A++G SG+GKS++L ++ + G + ++
Sbjct: 2 KNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 949 GKGIKEYNLRR----LRSQIG-LVQQEPLLFSCSIRNNICYG------NEAASEAEIVEV 997
G+ N ++ R ++G L Q L+ + ++ N+ G ++ + E
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEA 118
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+K ++ + +K +LSGG++QR+A+AR +LK P ++L DE T +LD
Sbjct: 119 LEKVGLNLKLK-----------QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDP 167
Query: 1058 ESERVIVSALEALN 1071
++ ++ L LN
Sbjct: 168 KNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 79/243 (32%), Positives = 111/243 (45%), Gaps = 35/243 (14%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN- 941
+I+ +++ F Y + L S++IE VA +GPSG GKS+ L L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 942 --EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-------NEAAS 990
EG I IDG+ I K + LR +G+V Q P F SI N+ YG + A
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ E K A + D + + E LSGGQ+QR+ IAR + P+++L+DE
Sbjct: 120 RQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
SALD S + +E L EL T + V H + SD GE
Sbjct: 173 PASALDPIS----TAKVEEL------IHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGE 222
Query: 1110 VVE 1112
+VE
Sbjct: 223 MVE 225
|
Length = 250 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 61/210 (29%), Positives = 108/210 (51%), Gaps = 27/210 (12%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
F L+ G++ A+VG SG GKST+++L+A F P +G +LI+ +++ + +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA--DRPVSM 74
Query: 338 VSQEPSLFTG-SLMDNIKVG-----NMDADDEQ-IYNASMMANAHSFISQLPDQYSTELG 390
+ QE +LF ++ N+ +G + A+D Q I A +LP +
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGE------ 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQEALERAMQGRT 446
LSGG++QR+A+AR +V++ P+LLLDE +ALD +E LV + A T
Sbjct: 129 -----LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL--HAETKMT 181
Query: 447 VILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
V+++ H+ A + +++G++ G
Sbjct: 182 VLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 20/218 (9%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLR 332
IL G SL++P G++VAL+G +G GK+T++ + P +G I D +I L + R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 333 KNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ 391
IG V + +F ++ +N+ +G + + + + +L ++ Q
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKR--KARLERVYELFPRLKER----RKQ 128
Query: 392 RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE---ALER-AMQGRTV 447
LSGG++Q +AIARA++ P +LLLDE + L + K+V+E A+ +G T+
Sbjct: 129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTI 185
Query: 448 ILI---AHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482
+L+ A I AD V+E G+V GT LL
Sbjct: 186 LLVEQNARFALEI--ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
D IL SLS+ AG+ +A+ G SGCGKST++ +VA P++G +L + ++ L ++
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
R+ + +Q P+LF ++ DN+ QI N A + + L
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF------PWQIRNRRPDRAAALDLLARFALPDSILT 128
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--AMQGRTVI 448
+ +LSGG+KQRIA+ R + P ILLLDE TSALD +++ ++E + R Q V+
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188
Query: 449 LIAH-RMSTIVNADMIAVVEDGQVTE 473
I H + I +AD + ++ G E
Sbjct: 189 WITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 22/239 (9%)
Query: 886 IEFQNIKFNY-PSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I+ +N+ Y P E L+N +++IE G V L+G +G+GKS+++ L P G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 944 IILIDGKGI--KEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEV 997
I+IDG I K+ L +R ++GLV Q P LF +I +I +G N SE EI
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
K+A ++ + Y+ + +LSGGQK+R+AIA + P I++LDE T+ LD
Sbjct: 123 VKRA-----MNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ I++ ++ L+ + T I V+H + V +D I+VM+KG+ G+
Sbjct: 178 KGRDEILNKIKELHKE--------YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 39/245 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE + + ++ R +L+ L + G +A++G SG+GKS++L L+L P++G I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 946 LIDGKGIKEYN---LRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA---SEAEIVEVS 998
LIDG+ I + + L +R ++G++ Q+ LF S ++ N+ + E+ I E+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 999 KKANIHDFISSLPDGYDTVVGEKG-------CQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
+ +VG +G +LSGG ++R+A+AR + P ++ LDE
Sbjct: 126 -LMKLE------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
TS LD S VI + LN A T I V H L +++ +D + V+ G+V
Sbjct: 173 TSGLDPISAGVIDELIRELND--------ALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 1111 VEMGS 1115
+ G+
Sbjct: 225 IAEGT 229
|
Length = 263 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 5e-25
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 6/161 (3%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
+LNN SL + G +A+ GPSG GKS++L ++ P G +L +G+ + R
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022
Q+ Q P LF ++ +N+ + + + + A + D ++ D+++ +
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNR----RPDRAAAL-DLLARFALP-DSILTKNI 131
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+LSGG+KQRIA+ R L P I+LLDE TSALD ++R I
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 44/250 (17%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ I Y + L + +L G + L+GPSGAGKSS+L +L P G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 946 LIDG------KGIKEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYG---------NEAA 989
I G K + +R LR +G+V QQ L +++ N+ ++A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+ AE ++ K+ + + P LSGGQ+QR+AIAR L+ P ++L D
Sbjct: 120 ARAE--KLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDK 1107
E T+ALD E IVS ++ L + TQ+ V H + A S V V M+
Sbjct: 167 EPTAALDPEITAQIVSIIKELA---------ETGITQVIVTHEVEVARKTASRV-VYMEN 216
Query: 1108 GEVVEMGSHS 1117
G +VE G S
Sbjct: 217 GHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-25
Identities = 63/220 (28%), Positives = 114/220 (51%), Gaps = 13/220 (5%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNI--KDL 326
IL +L I ++ A +G SGCGKST + R D G++ ID +++ D
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVG---NMDADDEQIYNASMMANAHSFISQLPD 383
++ LR +G V Q+P+ F S+ DN+ G + A +++ + ++ + + + L +
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD-EIVEKSLTSVG-LWE 137
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
+ L +LSGGQ+QR+ IARAI P +LL+DE SALD + +++ ++ +
Sbjct: 138 ELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK 197
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
T+I++ H M +D +A + G++ E T + +
Sbjct: 198 NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237
|
Length = 251 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-25
Identities = 73/241 (30%), Positives = 118/241 (48%), Gaps = 38/241 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + I ++ + V++N L I G + L+GPSG GK++VL L+ F P+ G I
Sbjct: 15 VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAEIVEVSKKA- 1001
++DG+ I ++ + V Q LF ++ N+ +G + AEI +A
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 1002 ---NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ +F P QLSGGQ+QR+AIAR ++ +P ++LLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQIT---VAH-RLATVINSDVIVVMDKGEVVEMG 1114
+ + + L+AL R IT V H + + SD IVVM G + + G
Sbjct: 179 LRKQMQNELKALQ-----------RKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
Query: 1115 S 1115
+
Sbjct: 228 T 228
|
Length = 375 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 6e-25
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 24/244 (9%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
Y +P + L+ SL+I +G++V ++G SGCGK+T+++L+A F PS G I ++ I+
Sbjct: 13 YEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71
Query: 326 LDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQ 384
+ G V Q +L +++DN+ G I A AH ++ + +
Sbjct: 72 PGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALVGLE 123
Query: 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ- 443
+ + QLSGG +QR+ IARA+ P +LLLDE ALD+ + + +QE L Q
Sbjct: 124 GAEH--KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181
Query: 444 -GRTVILIAHRM-STIVNADMIAVVE--DGQVTETGTHHSLLQTSDFYNRLFTMQNLRPI 499
G+ V+LI H + + A + V+ G+V E L DF R + R I
Sbjct: 182 TGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER---LPL----DFARRYAAGEPSRAI 234
Query: 500 DDSR 503
Sbjct: 235 KSDP 238
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-25
Identities = 76/252 (30%), Positives = 114/252 (45%), Gaps = 48/252 (19%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ I Y + L + +L G + L+GPSGAGKSS+L +L P G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 946 LIDG------KGIKEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYG---------NEAA 989
I G K + +R LR +G+V QQ L +++ N+ ++A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL 119
Query: 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+ AE ++ ++ + + P LSGGQ+QR+AIAR L+ P ++L D
Sbjct: 120 ARAE--KLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVLLFD 166
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRT--TQITVAHR--LATVINSDVIVVM 1105
E T+ALD E IVS + L + T TQ+ V H +A S V V M
Sbjct: 167 EPTAALDPEITAQIVSIIREL-----------AETGITQVIVTHEVEVARKTASRV-VYM 214
Query: 1106 DKGEVVEMGSHS 1117
+ G +VE G S
Sbjct: 215 ENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNI--KDLD 327
LK +LSIP ++ A++G SGCGKST I + G++ + NI +D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSFISQL 381
L LRKNIG V Q+ + F S+ DN+ G ++I S+ A L
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA------L 141
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D+ L + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S + ++E + +
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 442 MQGRTVILIAHRM 454
+ T++++ H M
Sbjct: 202 KEKYTIVIVTHNM 214
|
Length = 259 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 7e-25
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 17/194 (8%)
Query: 290 LVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-S 348
L+G SGCGK+T++ L+A F P +G I++D ++ ++ ++I V Q +LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 349 LMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG-VQLSGGQKQRIAI 406
+ +N+ G M ++ A + QL E R QLSGGQ+QR+A+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLE-ALRLV-QL-----EEFADRKPHQLSGGQQQRVAL 111
Query: 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ---GRTVILIAHRMS-TIVNADM 462
ARA+V P ILLLDE SALD + +Q L + +Q G T + + H + +D
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLEL-KTIQEQLGITFVFVTHDQEEAMTMSDR 170
Query: 463 IAVVEDGQVTETGT 476
IA++ G++ + GT
Sbjct: 171 IAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 9e-25
Identities = 85/250 (34%), Positives = 118/250 (47%), Gaps = 37/250 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----P 940
+E +N+ Y + L + S++I A +GPSG GKS++L R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 941 NEGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
EG I +DG+ I K+ ++ LR ++G+V Q P F SI N+ YG N
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
E VE S + ++L D + E LSGGQ+QR+ IAR + P ++LLDE T
Sbjct: 143 EAVERSLRG------AALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPT 196
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL---ATVINSDVIVVMDKGE 1109
SALD S I E L EL S+ T + V H + A V SD M G+
Sbjct: 197 SALDPISTLKI----EEL------ITELKSKYTIVIVTHNMQQAARV--SDYTAFMYMGK 244
Query: 1110 VVEMGSHSTL 1119
+VE G TL
Sbjct: 245 LVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 9e-25
Identities = 66/210 (31%), Positives = 104/210 (49%), Gaps = 33/210 (15%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD 325
D LKG S+ IP + AL+G SGCGKST + + R D +G + +D +I
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 326 --LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-------------------NMDADDEQ 364
++L LRK +G V Q P+ F S+ +NI G + DA+DE
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ + A L D+ + L + LSGGQ+QR+ IAR + +P ++L+DE S
Sbjct: 177 VERSLRQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 425 ALDSESEKLVQEALERAMQGRTVILIAHRM 454
ALD + +++ +E + TV+++ H M
Sbjct: 230 ALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
|
Length = 305 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 25/213 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS-- 312
ID++D+ Y ++ +L+I + A +G SGCGKSTV+ + R ++ P
Sbjct: 5 IDVKDLNIYYG---SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 313 -NGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVG-------NMDAD 361
G++L+D ++ +D ++R+ IG V Q P+ F T S+ DN+ G N
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 362 DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
DE + + AN L ++ L + G LSGGQ+QR+ IARAI P +LL+DE
Sbjct: 122 DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 422 ATSALDSESEKLVQEALERAMQGRTVILIAHRM 454
SALD S +++ + Q T++++ H M
Sbjct: 175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-25
Identities = 78/251 (31%), Positives = 119/251 (47%), Gaps = 21/251 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----P 311
I +DV +Y + L G SL ++ AL+G SGCGKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 312 SNGDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA--DDEQIYN 367
G+I + NI +DL LRK +G V Q+P+ F S+ DN+ G A D+++ +
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
+ + + + + L + SGGQ+QRI IARA+ P ++LLDE TSALD
Sbjct: 122 QRVEESLKQ--AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
Query: 428 SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ---- 482
S ++E L T I++ H + +D A + +G + E G +
Sbjct: 180 PISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK 239
Query: 483 --TSDFYNRLF 491
TSD+ N F
Sbjct: 240 QITSDYLNGRF 250
|
Length = 251 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 895 YPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK- 953
YP PEV L + E G +AL+G +GAGKS++L L P G +LIDG+ +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 954 -EYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSKKA----NIH 1004
L R ++GLV Q+P LF+ + ++ +G N SEAE+ ++A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
LSGG+K+R+AIA + RP ++LLDE T+ LD ++
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 1065 SALEALN 1071
+ L L
Sbjct: 168 AILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 14/196 (7%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
D IL S S+ AG+ + G SGCGKST++ +VA P++G +L + +I L +
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVG---NMDADDEQIYNASMMANAHSFISQLPDQYST 387
R+ + +Q P+LF ++ DN+ D I+ + F LPD T
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLE----RF--ALPD---T 129
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGR 445
L + +LSGG+KQRI++ R + P +LLLDE TSALD ++ V E + R + Q
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI 189
Query: 446 TVILIAHRMSTIVNAD 461
V+ + H I +AD
Sbjct: 190 AVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 19/218 (8%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD----LDLKSLRKN 334
++P + A+ G SG GK+T+I L+A P G+I+++ + D + L ++
Sbjct: 17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ 391
IG V QE LF S+ N++ G + +I ++ I L LG+
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG--IGHL-------LGR 127
Query: 392 RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVIL 449
+LSGG+KQR+AI RA++ +P +LL+DE +ALD + + LER G ++
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 450 IAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486
++H + ++ AD + V+EDG+V G + + D
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 14/239 (5%)
Query: 254 DGNI-DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-- 310
N+ +IR+ F Y +R +L +L I K+ A +G SGCGKST + + + D
Sbjct: 77 HANVFEIRNFNFWYMNRTKH-VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI 135
Query: 311 ---PSNGDILIDSLNIKDLDLKSL--RKNIGAVSQEPSLFTGSLMDNIKVG--NMDADDE 363
G+I N + + SL R IG V Q+P+ F S+ DN+ G N +D
Sbjct: 136 EGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDR 195
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+I + + S + L D+ +L + G LSGGQ+QR+ IARAI P +LL+DE T
Sbjct: 196 KILEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253
Query: 424 SALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
SALD + ++E + + ++I++ H M+ +D G + E G ++
Sbjct: 254 SALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 76/251 (30%), Positives = 123/251 (49%), Gaps = 33/251 (13%)
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PSN--- 313
+ + F Y LK ++ + ++ AL+G SGCGKST + R +D P N
Sbjct: 19 VNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE 75
Query: 314 GDILI--DSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-------NMDADD 362
G+I++ D++NI ++D +R I V Q+P+ F S+ +N+ G +
Sbjct: 76 GEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILE 135
Query: 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
E++ NA + NA L D+ LG LSGGQ+QR+ IARA+ +P ILL DE
Sbjct: 136 ERVENA--LRNA-----ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
TSALD + ++E + T++++ H M +D A + G++ E G ++
Sbjct: 189 TSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
Query: 482 ------QTSDF 486
QT D+
Sbjct: 249 IKPKNKQTEDY 259
|
Length = 265 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-24
Identities = 73/211 (34%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
LK SLS+ G+ V L+G SGCGK+T++ ++A + G I +I L ++
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
+ G V Q +LF ++ DNI G N ++ A +A + LP G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV--AERVAELLDLVG-LPGSERKYPG 133
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS-ESEKLVQEALERAMQGR---T 446
QLSGGQ+QR+A+ARA+ +P +LLLDE SALD+ E L E R +Q R T
Sbjct: 134 ----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI--RQLQRRLGVT 187
Query: 447 VILIAH-RMSTIVNADMIAVVEDGQVTETGT 476
I++ H + + AD I V+ G + + GT
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 71/242 (29%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+++++ F Y ++ L S + G+ ++++G +G GKST + L+ + +G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD-------------- 362
+ID + + ++ +R IG V Q P DN VG DD
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP--------DNQFVGATVEDDVAFGLENKGIPHEE 116
Query: 363 --EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
E++ A + F + P +LSGGQKQR+AIA A+ P I++LD
Sbjct: 117 MKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILD 165
Query: 421 EATSALDSESE-KLVQEALE-RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478
EATS LD E +L++ R TVI I H + + +D + V+++GQV T T
Sbjct: 166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPR 225
Query: 479 SL 480
L
Sbjct: 226 EL 227
|
Length = 279 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 69/197 (35%), Positives = 101/197 (51%), Gaps = 25/197 (12%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKDLD 327
L L L IPA K++A +G SGCGKST++ R D G +L NI D
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 328 LKS--LRKNIGAVSQEPSLFTGSLMDNIKV--------GNMDADDEQIYNASMMANAHSF 377
+ S LR+ +G V Q P+ F S+ +NI GN+D ++ S+ A
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD----ELVEDSLRRAA--- 146
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
+ ++ +L ++G LSGGQ+QR+ IARAI P +LL+DE SALD S + V+E
Sbjct: 147 ---IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEEL 203
Query: 438 LERAMQGRTVILIAHRM 454
+ T+I++ H M
Sbjct: 204 CLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 23/220 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI----KDLDLKS 330
+ + GK A+VG +G GKST+I + P+ G + +D + I KD ++
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 331 LRKNIGAVSQ--EPSLFTGSLMDNIKVG----NMDADDEQIYNASMMANAHSFISQLPDQ 384
+RK IG V Q E LF ++ I G M+ D+ + Y AH + L
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-------AHRLLMDL--G 133
Query: 385 YSTE-LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM- 442
+S + + Q Q+SGGQ ++IAI + NP I++LDE T+ LD +S++ V L+
Sbjct: 134 FSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193
Query: 443 -QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480
+ +T+IL++H M+ + AD + V+++G + + L
Sbjct: 194 DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 36/239 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ VT L++ +L I G V L+GPSG GK++ L ++ +P G I
Sbjct: 1 VELENV---TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 946 LIDGKGI-----KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEA--ASEAEIVE- 996
I G+ + K+ + I +V Q L+ ++ +NI +G + + EI E
Sbjct: 58 YIGGRDVTDLPPKDRD-------IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER 110
Query: 997 VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
V + A + I L D QLSGGQ+QR+A+ R +++ P + L+DE S LD
Sbjct: 111 VREVAELLQ-IEHLLDRKPK-------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
A+ + + L+ L + TT I V H + +D I VM+ G++ ++G
Sbjct: 163 AKLRVQMRAELKRLQQRLG--------TTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 31/238 (13%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRL 960
+N+ SL + G ++G SG+GKS++L + R +P G +LIDG+ I + LR L
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 961 RSQ-IGLVQQEPLLF-SCSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSLPD 1012
R + I +V Q L ++ N+ +G A E E + + + PD
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD 159
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
+LSGG +QR+ +AR L P I+L+DEA SALD R + L L
Sbjct: 160 -----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 1073 KSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
+ + T + + H L + D I +M G +V++G+ ++ Y R
Sbjct: 209 E--------LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-24
Identities = 74/248 (29%), Positives = 121/248 (48%), Gaps = 25/248 (10%)
Query: 886 IEFQNI-KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ NI K + + LNN SL + G ++G SGAGKS+++ + P G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 945 ILIDGKGI---KEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKK 1000
+++DG+ + L + R QIG++ Q LL S ++ N+ E + + E+ +K
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-DEIKRK 120
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ L D +D+ LSGGQKQR+AIAR L P ++L DEATSALD +
Sbjct: 121 VTELLALVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQIT---VAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116
+ I+ L+ +N R +T + H + V D + V+ GE++E G+
Sbjct: 177 QSILELLKEIN-----------RRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225
Query: 1117 STLVAESQ 1124
S + + +
Sbjct: 226 SEIFSHPK 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-24
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI--KDLDLKSLR 332
L ++ I G+ V L+G +G GKST+I + P++G I+ID ++I K + L +R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 333 KNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIYN---ASMMANAHSFISQLPDQY 385
K +G V Q P LF ++ +I G N+ +E+I N +M Y
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD--------Y 134
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD--SESEKLVQEALERAMQ 443
+ +LSGGQK+R+AIA + P IL+LDE T+ LD E L +
Sbjct: 135 EDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
T+IL++H M + AD I V+ G+ GT
Sbjct: 195 NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 37/238 (15%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++ RD+ ++YP LKG + G+MVAL+G +G GKST+ P++G++
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 317 LIDSLNIKDLDLKSL---RKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIYNAS 369
LI IK D KSL RK +G V Q P LF ++ +++ G N+ E++
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQ------LSGGQKQRIAIARAIVKNPPILLLDEAT 423
A +G G + LSGGQK+R+AIA + P I++LDE T
Sbjct: 119 KEALK-------------AVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT 165
Query: 424 SALD----SESEKLVQEALERAMQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETGT 476
S LD S+ KL+ + L + +G T+I+ H + + V AD + V+ DG++ + GT
Sbjct: 166 SGLDPMGASQIMKLLYD-LNK--EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 41/229 (17%)
Query: 907 FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL---RSQ 963
F L +E G +VA++GPSGAGKS++L L+ F P G + ++G+ + R
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQ-----DHTTTPPSRRP 72
Query: 964 IGLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDT 1016
+ ++ QE LFS ++ NI G AA ++ ++++ I D ++ LP
Sbjct: 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---- 128
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL--EALNPKS 1074
QLSGGQ+QR+A+AR L++ I+LLDE SALD AL E L S
Sbjct: 129 -------QLSGGQRQRVALARCLVREQPILLLDEPFSALD--------PALRQEMLTLVS 173
Query: 1075 SSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
C E + T + V+H L A I +VV D G + G L++
Sbjct: 174 QVCQE--RQLTLLMVSHSLEDAARIAPRSLVVAD-GRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 5e-24
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 28/234 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ + Y L KG +++I G++ A++G +G GKST+ + PS+G I
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 317 LIDSLNIKDLD-----LKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIYN 367
L D K +D L LR+++G V Q+P LF+ S+ ++ G N+ ++++
Sbjct: 64 LFDG---KPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A + I L D+ + LS GQK+R+AIA +V P +L+LDE T+ LD
Sbjct: 121 RVDNALKRTGIEHLKDKPTH-------CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 428 ----SESEKLVQEALERAMQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETGT 476
SE KL+ E + G T+I+ H + + + D + V+++G+V G
Sbjct: 174 PMGVSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-24
Identities = 69/237 (29%), Positives = 114/237 (48%), Gaps = 34/237 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +++ Y P F L + G VA++GPSGAGKS++L L+ F +P G I
Sbjct: 1 LALDKVRYEYEHLPM-----EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVS 998
++ + L + + ++ QE LF+ ++R NI G A + ++V+ +
Sbjct: 56 KVNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
++ I D++ LP+ QLSGGQ+QR+A+AR L++ I+LLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-P 161
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMG 1114
R E L C E + T + V H L+ I V+ +G++ +
Sbjct: 162 LLRE-----EMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 6e-24
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 56/207 (27%)
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329
L G SLS+ G++ AL+G +G GKST++ +++ Y P +G+IL+D K++
Sbjct: 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG---KEVSFA 67
Query: 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
S R DA I + QL
Sbjct: 68 SPR--------------------------DARRAGIA----------MVYQL-------- 83
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERAMQGRTVI 448
S G++Q + IARA+ +N +L+LDE T+AL +E E+L + QG VI
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 449 LIAHRMSTIVN-ADMIAVVEDGQVTET 474
I+HR+ + AD + V+ DG+V T
Sbjct: 137 FISHRLDEVFEIADRVTVLRDGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 30/220 (13%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNLRR 959
VL + +L+I PG V L GPSG+GK+++L L+ EG + + G+ G E L +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 960 LRSQIGLV-QQEPLLFSCSIRNNICYG---NEAASEAEIVEVSKK----ANIHDFISSLP 1011
LR IG + Q LL + R N+ S E E ++ + D + P
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
LSGGQKQR+AIAR L+ RP ++L DE T+ALD++S R +V ++ L
Sbjct: 140 H-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKL- 187
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
+ C L +T +R+ V +D IV M+ G+++
Sbjct: 188 AREQGCTILI-----VTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 63/244 (25%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I I +V +Y +++L SL IP G + +++G +G GKST++S+++R +G+I
Sbjct: 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV-------------GNMDADDE 363
ID L + K L K + + QE + + V G + +D
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQE-----NHINSRLTVRDLVGFGRFPYSQGRLTKEDR 113
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+I N ++ + + L D+Y E LSGGQ+QR IA + ++ +LLDE
Sbjct: 114 RIINEAI---EYLHLEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 424 SALDSESEKLVQEALERAMQ--GRTVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSL 480
+ LD + + + L R G+T++++ H ++ +D I +++G+V + G+ +
Sbjct: 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 481 LQTS 484
+Q
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-23
Identities = 65/255 (25%), Positives = 112/255 (43%), Gaps = 45/255 (17%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLAL-LLRFYDPN-----EGIILIDGKGI-- 952
V ++ S +++ G + +VG SG+GKS VLA ++ G IL DGK +
Sbjct: 18 VKAVDGVSFELKKGEILGIVGESGSGKS-VLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 953 -KEYNLRRLR-SQIGLVQQEPLL-----------FSCSIRNNICYGNEAASEAEIVEVSK 999
E LR++R +I ++ Q+P+ + +R + ++ ++ +E+ +
Sbjct: 77 LSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLE 136
Query: 1000 KANIHD---FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
I D + S P +LSGG +QR+ IA L P +++ DE T+ALD
Sbjct: 137 LVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ I+ L+ L + T I + H L V +D + VM G +VE G
Sbjct: 186 VTVQAQILDLLKELQREKG--------TALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237
Query: 1116 HSTLVAESQGVYSRL 1130
+ + Y+R
Sbjct: 238 VEEIFKNPKHPYTRG 252
|
Length = 316 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 11/190 (5%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNI--KDLD 327
LKG L ++ AL+G SGCGKST + + R D P G++ + NI + D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQY 385
+ LRK +G V Q+P+ F S+ +N+ G A D+ + + ++ + + + D+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ--AAIWDEV 138
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
L + + LSGGQ+QR+ IAR + P ++LLDE TSALD S ++ L
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 446 TVILIAHRMS 455
T+IL+ H M
Sbjct: 199 TIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 31/241 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLAL---LLRFYDPNE 942
+EF+++ F YP + LN+ S I G AL+G +G+GKS++ L LL D
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVS 998
I +DG + + +R ++G+V Q P ++ +++ +G N A E++++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 999 KKA----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+ + D+I S P LSGGQKQR+AIA L P I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
LD + I+ + L K++ T I++ H + +D ++V+D G+++ G
Sbjct: 174 LDPAGKEQILKLIRKLKKKNN--------LTVISITHDIDEANMADQVLVLDDGKLLAQG 225
Query: 1115 S 1115
S
Sbjct: 226 S 226
|
Length = 282 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 1e-23
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 41/203 (20%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLDLKSL 331
+LK S G++ A++G SG GKST+++ +A R +G++LI+ + LD +S
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING---RPLDKRSF 80
Query: 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ 391
RK IG V Q+ L +L + M ++ +L
Sbjct: 81 RKIIGYVPQDDILH-PTL--------------TVRETLM--------------FAAKL-- 109
Query: 392 RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILI 450
RG LSGG+++R++IA +V NP +L LDE TS LDS S V L R A GRT+I
Sbjct: 110 RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
Query: 451 AHRMSTIV--NADMIAVVEDGQV 471
H+ S+ + D + ++ G+V
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-23
Identities = 67/238 (28%), Positives = 123/238 (51%), Gaps = 3/238 (1%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G +D++ + Y + +L+ S S+ G+ V L+G +G GKST++S + R + G
Sbjct: 1216 GQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG 1273
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+I ID ++ + L++ RK G + Q+ +F+G+ N+ DE+I+ +
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGL 1332
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
S I Q PD+ L G LS G KQ + +AR+I+ ILLLDE ++ LD + +++
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
Query: 435 QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492
++ L+++ TVIL HR+ ++ V+E V + + LL + + + +
Sbjct: 1393 RKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 20/218 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-DLKSLRK 333
+ SL + G++V L+G +G GK+T+ +L+ FY PS+G ++ +I L + R
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIY---------NASMMANAHSFISQ--L 381
I Q LF G ++++N+ VG A + L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALE- 439
+ G LS GQ++R+ IARA+ P +LLLDE + L E+E+L + E
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 440 RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
R G T++LI H M ++ AD I V+ G+V GT
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 81/239 (33%), Positives = 114/239 (47%), Gaps = 45/239 (18%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YN 956
L S+ I AL+GPSG GKS+ L L R D +G + +DG+ I + N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYG------------------NEAASEAEIVEVS 998
L LR ++G+V Q P F SIR NI YG ++ +E E+VE S
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 999 -KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
++A + D ++ D D +G LSGGQ+QR+ IAR L P ++L+DE SALD
Sbjct: 181 LRQAALWDEVNDRLD--DNALG-----LSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMG 1114
+ S +E L ELA T + V H + A I+ V + GE+VE
Sbjct: 234 ----IATSKIEDL------IEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYD 282
|
Length = 305 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-23
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 54/238 (22%)
Query: 885 RIEFQNIKFNYPSRP---EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL--LRFYD 939
+ F+N+ S P +L N S + +PG A++GPSGAGKS++L L R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 940 PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYGNEAASEAEIVEVS 998
G +LI+G+ + R R IG V Q+ +L ++R +
Sbjct: 63 GVSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETL---------------- 103
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
F + L +G LSGG+++R++IA L+ P+++ LDE TS LD+
Sbjct: 104 ------MFAAKL----------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS--DVIVVMDKGEVVEMG 1114
S ++S L L + G RT ++ H+ ++ I D ++++ +G V+ G
Sbjct: 146 SALQVMSLLRRL----ADTG----RTIICSI-HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 81/230 (35%), Positives = 109/230 (47%), Gaps = 38/230 (16%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-----EGIILIDGKGIKEYNLR 958
LN+ SL P AL+GPSG+GKS++L + R D N G I+ +G I Y+ R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPR 78
Query: 959 ----RLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEAEIVEVS-KKANIHDFI 1007
LR +IG+V Q+P F SI N+ YG + E VE S K A+I D +
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV 138
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
+D+ +G LSGGQ+QR+ IAR L P I+LLDE TSALD S I L
Sbjct: 139 KDRL--HDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETL 191
Query: 1068 EALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGS 1115
L T + V + A+ I SD G+++E
Sbjct: 192 LGLKDD----------YTMLLVTRSMQQASRI-SDRTGFFLDGDLIEYND 230
|
Length = 252 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 30/239 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +++ ++Y LNN + ++A++GP+GAGKS++ P G +
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG------NEAASEAEIVEV 997
LI G+ I + N+R +R +GLV Q P +FS ++ +I +G +E +
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ + +P LSGG+K+R+AIA + P +++LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ + ++ L L P++ T I H+L V +D I VMDKG +V G+
Sbjct: 171 QGVKELIDFLNDL-PETYG-------MTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
Length = 277 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD 325
++ + S+ I + AL+G SGCGKST + + R D S G+IL + LNI D
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 326 --LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD------EQIYNASMMANAHSF 377
+++ +LR+ IG V Q+P+ F S+ +NI A + ++I S+ A
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--- 149
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L D+ L + LSGGQ+QR+ IAR + P +LLLDE SALD S ++E
Sbjct: 150 ---LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL 206
Query: 438 LERAMQGRTVILIAHRMSTIVN-ADMIA------VVEDGQVTETGTHHSLLQTSDFYNRL 490
+ + ++I++ H M + +D A +VE Q + T +T D+ N
Sbjct: 207 ITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKTEDYINGR 266
Query: 491 F 491
F
Sbjct: 267 F 267
|
Length = 268 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 13/231 (5%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
++++D+ +YPS +Q+ +LKG SL I AG+MVA+VG+SG GKST+++++ P++G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 316 ILIDSLNIKDLDLKSL----RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASM 370
+ ++ LD +L R++ G + Q L + + N++V + A E+
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER---KQR 121
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+ A + +L + + QLSGGQ+QR++IARA++ ++L DE T ALDS S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 431 EKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQ-VTETGTHHS 479
+ V L + +G TVI++ H A+ + + DG+ V
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230
|
Length = 648 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 68/224 (30%), Positives = 108/224 (48%), Gaps = 35/224 (15%)
Query: 904 LNNFSLQIE---PGLKV-ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI----KEY 955
L NF+L P + AL GPSG+GK+S++ ++ P+EG I ++G+ + K
Sbjct: 10 LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI 69
Query: 956 NLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGY 1014
L + +IG V Q+ LF ++R N+ YG + A+ ++ I + P
Sbjct: 70 FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-- 127
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
LSGG+KQR+AI R LL P ++L+DE ++LD +R I+ LE L
Sbjct: 128 ---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL---- 174
Query: 1075 SSCGELASRTTQIT---VAHRLATVIN-SDVIVVMDKGEVVEMG 1114
I V+H L V+ +D +VV++ G+V G
Sbjct: 175 -------RDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 3e-23
Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 907 FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ--I 964
F L + G VA++GPSGAGKS++L L+ F P G ILI+G ++ +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH----TASPPAERPV 73
Query: 965 GLVQQEPLLFS-CSIRNNICYG-------NEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016
++ QE LF+ ++ NI G N E + + + + F+ LP
Sbjct: 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREK-VEAAAAQVGLAGFLKRLPG---- 128
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL--EALNPKS 1074
+LSGGQ+QR+A+AR L++ I+LLDE SALD AL E L S
Sbjct: 129 -------ELSGGQRQRVALARCLVREQPILLLDEPFSALD--------PALRAEMLALVS 173
Query: 1075 SSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
C E + T + V H D +V +D G + GS L++ + L
Sbjct: 174 QLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALLG 229
|
Length = 231 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 92/269 (34%), Positives = 128/269 (47%), Gaps = 41/269 (15%)
Query: 861 EILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALV 920
+++ K EI P PE+ E +E +++ Y + V N+ S+ IE AL+
Sbjct: 3 QMVREKIEIAP-FPEAKEH-----ILEVKDLSIYYGEKRAV---NDISMDIEKHAVTALI 53
Query: 921 GPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLL 973
GPSG GKS+ L + R D +EG IL +G I N+ LR +IG+V Q+P
Sbjct: 54 GPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113
Query: 974 FSCSIRNNICYGNEAASEA------EIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLS 1026
F SI NNI + + A E EIVE S KA +L D + LS
Sbjct: 114 FPKSIYNNITHALKYAGERRKSVLDEIVEESLTKA-------ALWDEVKDRLHSSALSLS 166
Query: 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQ 1086
GGQ+QR+ IARTL +PA++LLDE SALD S + +E L EL +
Sbjct: 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISN----AKIEEL------ITELKEEYSI 216
Query: 1087 ITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
I V H + + SD G++VE
Sbjct: 217 IIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 77/269 (28%), Positives = 128/269 (47%), Gaps = 46/269 (17%)
Query: 886 IEFQNIKFNYPSRP--------EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937
+E ++++ +P + + ++ SL + G + LVG SG+GKS++ LLR
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 938 YDPNEGIILIDGKGIKEYN---LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEI 994
P++G I DG+ I + +R LR ++ +V Q+P S S R + +I
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY-GSLSPRMTV---------GQI 385
Query: 995 VEVSKKANIHDFISSLPDGYDTVVG---EKGC----------QLSGGQKQRIAIARTLLK 1041
+E + +H+ S + V+ E G + SGGQ+QRIAIAR L+
Sbjct: 386 IEEGLR--VHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL 443
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD 1100
+P ++LLDE TSALD + ++ L L K + + ++H LA V
Sbjct: 444 KPELILLDEPTSALDRSVQAQVLDLLRDLQQK--------HGLSYLFISHDLAVVRALCH 495
Query: 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
++VM G++VE G + A Q Y+R
Sbjct: 496 RVIVMRDGKIVEQGPTEAVFANPQHEYTR 524
|
Length = 534 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 3e-23
Identities = 64/234 (27%), Positives = 115/234 (49%), Gaps = 31/234 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ ++ Y L+G SL + G++VAL+G +G GK+T++ + P +G I
Sbjct: 4 LEVENLSAGYGKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 317 LIDSLNIKDLDL-KSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANA 374
+ D +I L + R I V + +F ++ +N+ +G D++ +
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE-AQERDLEEV 119
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ +L ++ QR LSGG++Q +AIARA++ P +LLLDE + L + K+V
Sbjct: 120 YELFPRLKER----RNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIV 172
Query: 435 QEALE-----RAMQGRTVILIAHRMSTIVNADM---IA----VVEDGQVTETGT 476
+E E R G T++L+ NA IA V+E+G++ +GT
Sbjct: 173 EEIFEAIKELRKEGGMTILLVEQ------NARFALEIADRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 21/243 (8%)
Query: 257 IDIRDVCFAY-PSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I + V Y P ++ L ++SIP+G VA++G +G GKST++ + P++G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 315 DILIDSLNI----KDLDLKSLRKNIGAVSQ--EPSLFTGSLMDNIKVGNMD---ADDEQI 365
+ I I K+ LK LRK +G V Q E LF ++ +I G M+ ++++
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
A M + LP++ L + +LSGGQ +R+AIA + P +L+LDE T+
Sbjct: 123 QKAREMIE----LVGLPEEL---LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 426 LDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
LD + K + E + + G T +L+ H M AD I V+ G V GT +
Sbjct: 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
Query: 483 TSD 485
D
Sbjct: 236 DPD 238
|
Length = 290 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 71/228 (31%), Positives = 109/228 (47%), Gaps = 31/228 (13%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN---EGIILIDGKGI--KEY 955
+L + +L I A +GPSG GKS+ L R D PN +G + IDG + +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA-------EIVEVSKKANIHDFIS 1008
N+ LR+++G+V Q+P F SI +N+ YG + A EIVE S +
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS------V 133
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
L + + + +LSGGQ+QR+ IAR + +P ++L+DE SALD + VI + ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
EL T I V H + SD + G +VE +
Sbjct: 194 ----------ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 4e-23
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
YP P+ +LKG + + G+++AL+G++G GKST++ + P +G +LID + D
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL-D 57
Query: 326 LDLKSL---RKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIY----NASMMANA 374
K L R+ +G V Q+P LF + ++ G N+ + ++ A A
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
+ LSGG+K+R+AIA A+ P +LLLDE T+ LD + +
Sbjct: 118 SGLRERPTHC-----------LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 435 QEALERAM-QGRTVILIAH 452
L R +G TV++ H
Sbjct: 167 LAILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 5e-23
Identities = 75/245 (30%), Positives = 115/245 (46%), Gaps = 29/245 (11%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEYNLRRL 960
L + ++QIE AL+G SG GKS+ L R D +G++ I+GK +K ++ L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYG--------NEAASEAEIVEVSKKANIHDFISSLPD 1012
R +G+V Q+P +F SI NI Y N+ EA +V+ +K + + +
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD--- 134
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
+ + LSGGQ+QR+ IAR L +P ++LLDE TSALD S VI L+
Sbjct: 135 ----KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK---- 186
Query: 1073 KSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
EL+ + I V H + +D GE++E G + ++ Y
Sbjct: 187 ------ELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAY 240
Query: 1132 QLQAF 1136
AF
Sbjct: 241 LSGAF 245
|
Length = 246 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-23
Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 27/225 (12%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSL 331
+L L+I G++V ++G SG GKST++ + + + ++GD+++D L + D +D + +
Sbjct: 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
R+ G V Q+ LF + ++N+ G + ++ AS A +L + L
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGPL-----RVRGAS-KEEAEKQARELLAKVG--LA 127
Query: 391 QRG----VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--- 443
+R +LSGGQ+QR+AIARA+ P ++L DE TSALD E L E L + MQ
Sbjct: 128 ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE---LRHEVL-KVMQDLA 183
Query: 444 --GRTVILIAHRMSTI--VNADMIAVVEDGQVTETGTHHSLLQTS 484
G T++++ H + V + +I ++ G++ E G L++
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLI-FIDKGRIAEDGDPQVLIKNP 227
|
Length = 240 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 6e-23
Identities = 84/279 (30%), Positives = 123/279 (44%), Gaps = 39/279 (13%)
Query: 867 TEIEPDAPESSESGRIKGR---IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
T D + S IE +++ Y + L++ S+ I A++GPS
Sbjct: 18 TTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPS 74
Query: 924 GAGKSSVLALLLRFYD-----PNEGIILIDGKGIKEYNLR--RLRSQIGLVQQEPLLFSC 976
G GKS+ L + R D EG + GK + + ++ LR +IG+V Q+P F
Sbjct: 75 GCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK 134
Query: 977 SIRNNICYG----NEAASEAEIVEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031
SI +N+ YG E VE S ++A + D + D G LSGGQ+Q
Sbjct: 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLD-------SSGLDLSGGQQQ 187
Query: 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091
R+ IAR + P ++L+DE SALD V S +E L ELA T + V H
Sbjct: 188 RLCIARAIAPDPEVILMDEPASALDP----VATSKIEDL------IEELAEEYTVVIVTH 237
Query: 1092 RL--ATVINSDVIVVMDKGEVVEMGSHSTLV--AESQGV 1126
+ A I+ V + GE+VE + ESQ V
Sbjct: 238 NMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQRV 276
|
Length = 285 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 6e-23
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 23/212 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L +L +P G +VAL+G SG GKST++ ++A P +G I ++ + + + +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 335 IGAVSQEPSLFTG-SLMDNIKVG------NMDADDEQIYNASMMANAHSFISQLPDQYST 387
IG V Q +LF ++ DNI G ++ + + L D+Y
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQ----LEGLGDRYPN 129
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GR 445
QLSGGQ+QR+A+ARA+ P +LLLDE ALD++ K ++ L +
Sbjct: 130 -------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
T + + H + AD I V+ +G++ + G+
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-23
Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 26/234 (11%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI---KDLDLK 329
L +K SL+I G++ ++G SG GKST++ L+ R +P+ G +LID ++I D +L+
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 330 SLR-KNIGAVSQEPSLFTG-SLMDNIKVG----NMDADD--EQIYNASMMANAHSFISQL 381
+R K I V Q +L +++DN G ++A++ E+ +A ++
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER- 440
PD+ LSGG +QR+ +ARA+ NP ILL+DEA SALD +Q+ L +
Sbjct: 162 PDE-----------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKL 210
Query: 441 -AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLF 491
A RT++ I+H + + D IA++++G+V + GT +L ++ Y R F
Sbjct: 211 QAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264
|
Length = 400 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 6e-23
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNIKD 325
D+ +K +L + G + AL+G SGCGK+T + + R +D + G IL+D +I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 326 --LDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDADDE--QIYNASMMANAHS 376
+D ++R+ +G V Q+P+ F T S+ DN+ K+ + D ++ S+ A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA-- 133
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
L D+ L LSGGQ+QR+ IARA+ P ILL+DE TSALD S +++
Sbjct: 134 ----LWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189
Query: 437 ALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
+ + T+I++ H M +D + G + E G L
Sbjct: 190 LMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 6e-23
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 39/246 (15%)
Query: 886 IEFQNIKFNYPSRPEVT---VLNNFSLQIEPGLKVALVGPSGAGKSSVL----ALLLRFY 938
I+ +N+ + Y S E T L++ +L+++ G + ++G +G+GKS++ ALL+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--- 61
Query: 939 DPNEGIILIDGKGIK-EYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAE 993
P+EG + +DG E NL +R++ G+V Q P + + + ++ +G N E
Sbjct: 62 -PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEE 120
Query: 994 I---VEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
I V+ S KK ++++ P LSGGQKQR+AIA L RP ++ D
Sbjct: 121 IRERVDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFD 169
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
E T+ LD R +V+ ++ LN K T I + H + + +D I+VMD G+
Sbjct: 170 EPTAMLDPSGRREVVNTIKELNKKYG--------ITIILITHYMEEAVEADRIIVMDSGK 221
Query: 1110 VVEMGS 1115
VV G+
Sbjct: 222 VVMEGT 227
|
Length = 280 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 6e-23
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 12/212 (5%)
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID--SLNIKDLD 327
P + SLS+ G++ AL+G +G GKST++ ++ Y P +G+I +D + IK
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS-P 73
Query: 328 LKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY- 385
++R IG V Q L T ++ +NI +G + I A + I +L ++Y
Sbjct: 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLI----DRRQARARIKELSERYG 129
Query: 386 -STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERAMQ 443
+ + LS G++QR+ I +A+ + +L+LDE T+ L E+++L + A +
Sbjct: 130 LPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE 189
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474
G+T+I I H++ ++ AD + V+ G+V T
Sbjct: 190 GKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 6e-23
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
+ +L SL + G++ +G +G GK+T + ++ P +G+I D
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG--KSYQKNIE 69
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQ--YSTE 388
+ IGA+ + P + N+ A + A ++ I ++ D
Sbjct: 70 ALRRIGALIEAPGFY----------PNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTV 447
++ S G KQR+ IA A++ NP +L+LDE T+ LD + K ++E + QG TV
Sbjct: 120 AKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITV 179
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
++ +H +S I AD I ++ G++ E G
Sbjct: 180 LISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 8e-23
Identities = 76/224 (33%), Positives = 103/224 (45%), Gaps = 32/224 (14%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE-----GIILIDGKGI--KEYN 956
+ +Q E AL+GPSG+GKS+ L L R D + G IL G I KE N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA------EIVEVSKKANIHDFISSL 1010
+ +R IG+V Q P F+ SI NI + E A EIVE S K ++L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQ------AAL 149
Query: 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070
D + + LSGGQ+QR+ IAR + +P I+L+DE SALD + LE
Sbjct: 150 WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP----ISTMQLE-- 203
Query: 1071 NPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVE 1112
+ EL T I V H + A SD G+++E
Sbjct: 204 ----ETMFELKKNYTIIIVTHNMQQAARA-SDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 9e-23
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + I ++ V L+ SL + PG AL+G +GAGKS+++ +L Y P+ G I
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 946 LIDGKGIKEYNLRRLRSQ-IGLVQQEPLLF-SCSIRNNICYGNEAASEAEIV---EVSKK 1000
LIDGK + + R + I V QE L + S+ NI G E ++ + ++
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1001 ANIHDFISSL--PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD-A 1057
A + ++ L DT+VG+ LS Q+Q + IAR L +++LDE T+AL
Sbjct: 126 AR--ELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179
Query: 1058 ESERVIVSALEALNPKSSSCGELASR-TTQITVAHRLATVI-NSDVIVVMDKGEVV 1111
E+ER+ + + L ++ I ++HRL V +D I V+ G VV
Sbjct: 180 ETERL----FDLIR-------RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 9e-23
Identities = 72/214 (33%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNI--KDLD 327
LK +L I ++ A++G SGCGKST I + R + PS G IL NI K
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG-------NMDADDEQIYNASMMANAHSFISQ 380
++ LR N+G V Q+P+ F S+ DN+ G + DE I S+ A
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDE-IVEKSLRGAA------ 152
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
+ D+ L LSGGQ+QR+ IAR + P ++L+DE TSALD S V+E ++
Sbjct: 153 IWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473
+ ++I++ H M +D A +G V E
Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 904 LNNFSLQIE---PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK----GIKEYN 956
L +F+L+I+ + G SGAGKS++L + P+ G I+++G K+ N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 957 LRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD 1015
L + +IGLV Q+ LF ++R N+ +G + E + ++ + + L G D
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLD 122
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
++ QLSGG+KQR+A+AR L +P ++LLDE SALD
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 36/219 (16%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKS 330
ILKG L + G+ VA+VG SG GKST+++++A DPS+G++ + + LD +
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 331 LR-KNIGAVSQE----PSLFTGSLMDNIKV-----GNMDADDEQIYNASMMANAHSFISQ 380
LR +++G V Q P+L + ++N+ + G AD A A + +
Sbjct: 85 LRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSAD--------SRAGAKALLEA 133
Query: 381 LPDQYSTELGQR----GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
+ LG+R QLSGG++QR+A+ARA P +L DE T LD + + +
Sbjct: 134 V------GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
Query: 437 AL--ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
L +G T++L+ H D + G++ E
Sbjct: 188 LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 76/253 (30%), Positives = 120/253 (47%), Gaps = 34/253 (13%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-----LIDGK---GIK 953
TVL+ L+++PG VA++GPSG+GK+++L + P G I ID +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 954 EYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYG-----NEAASEAEIVEVSKKANIHDFI 1007
+ +R+LR +G V Q LF ++ NI G E EA A + +
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG--L 134
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
+ Y +LSGGQ+QR+AIAR L RP ++L DE TSALD E +++ +
Sbjct: 135 AGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 1068 EALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGV 1126
L + + T + V H ++ + +D + MD+G +VE G L A+ Q
Sbjct: 188 RQLAQE---------KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQP 238
Query: 1127 YSRLYQLQAFSGN 1139
+R + L+ F
Sbjct: 239 RTRQF-LEKFLLQ 250
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 1e-22
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 19/193 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNI--KDLD 327
+K + I + + A++G SGCGKST + + R D PS G ++ D +I K D
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDEQIYNASMMANAHSFISQL 381
LRK IG V Q+P+ F S+ DNI G N E+I S+ A L
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA------L 168
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D+ S L + + LSGGQ+QR+ +AR + P ILLLDE TSALD ++ +++ ++
Sbjct: 169 WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 442 MQGRTVILIAHRM 454
T++++ H M
Sbjct: 229 RGSYTIMIVTHNM 241
|
Length = 286 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----P 311
I ++D+ F Y + ++G S+ I K+ A++G SGCGKST I + R +
Sbjct: 8 IKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 312 SNGDILIDSLNIKD--LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG------NMDADDE 363
G + NI D +++ LR+ IG V Q P+ F S+ +N+ G AD +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+I +++ A L + +L + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 424 SALDSESEKLVQEALERAMQGRTVILIAHRM 454
SALD + V+E + T+ ++ H M
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 97.1 bits (243), Expect = 2e-22
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 11/212 (5%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRK 333
L S S+ G++ L+G +G GK+T+ +L++ F P++G +L D +I L + R
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
IG Q P LF ++++N+ V A + + ++ +G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVA-AQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 393 GV------QLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERAMQGR 445
+ +LS GQ++R+ IARA+ +P +LLLDE + L E+E+L + E +G
Sbjct: 135 DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGI 194
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
TV+L+ H M +++ AD + V++ G+V GT
Sbjct: 195 TVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 3e-22
Identities = 78/245 (31%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----- 939
RIE +N+ + + +L N +L I AL+GPSG GKS+ + L R D
Sbjct: 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGF 59
Query: 940 PNEGIILIDGKGIKEYNLR--RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE------ 991
+EG I +DG I + + LR ++G+V Q+P F SI +N+ YG E
Sbjct: 60 RHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFI 119
Query: 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
E VE S KA ++L D + + LSGGQ+QR+ IART+ P ++L+DE
Sbjct: 120 EERVEESLKA------AALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGE 1109
SALD S I + +L T + V H + AT ++ ++ GE
Sbjct: 174 CSALDPISTTKIEDLIH----------KLKEDYTIVIVTHNMQQATRVSKYTSFFLN-GE 222
Query: 1110 VVEMG 1114
++E G
Sbjct: 223 IIESG 227
|
Length = 250 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 3e-22
Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 31/245 (12%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-- 941
G I +++ Y + TVL++ SL+IE G +AL+G SG GK+++L + F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEA--ASEAEIVE-- 996
G I I + + + + + L+ Q LF + +N+ +G A +A+I E
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 997 --VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
K + D + LP QLSGG +QRIAIAR + P ++LLDE SA
Sbjct: 119 ADALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
LDA + + AL+ EL T + + +D +M G + G
Sbjct: 168 LDANIRANMREEIAALHE------ELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
Query: 1115 SHSTL 1119
L
Sbjct: 222 EPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
+D I++ D+ F Y LKG SLSIP G AL+G +G GKST++ + Y P
Sbjct: 1 MDNIIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIYN- 367
G + + + + K +R +G V Q+P +F+ ++ D++ G NM D +++
Sbjct: 59 RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR 118
Query: 368 ---ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
A F + P LS GQK+R+AIA + +P +++LDE +
Sbjct: 119 VEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
Query: 425 ALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
LD ++ + E L+R QG+TVI+ H + AD + V+++G+V G
Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 69/245 (28%), Positives = 124/245 (50%), Gaps = 32/245 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF+N+ ++ VL+N L I+ G V ++GPSG+GKS++L + + + G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 946 LIDGKGIK--EYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG-------NEAASEAEIV 995
++DG + + + R +R + G+V Q+ LF + N+ +G ++ +E +
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
E+ K + + P +LSGGQ+QR+AIAR L +P +ML DE TSAL
Sbjct: 119 ELLAKVGLAERAHHYPS-----------ELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
D E ++ ++ L + + + T +I A ++A+ ++ +DKG + E G
Sbjct: 168 DPELRHEVLKVMQDLAEEGMT---MVIVTHEIGFAEKVAS-----RLIFIDKGRIAEDGD 219
Query: 1116 HSTLV 1120
L+
Sbjct: 220 PQVLI 224
|
Length = 240 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 3e-22
Identities = 70/209 (33%), Positives = 104/209 (49%), Gaps = 22/209 (10%)
Query: 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI-------KDLDLKSLRKN 334
I ++ +G SGCGKSTV+ + R D G ++ K +D +R+
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 335 IGAVSQEPSLFTGSLMDNIKVG---NMDADD--EQIYNASMMANAHSFISQLPDQYSTEL 389
IG V Q+P+ F+ S+ DN+ G N D +++ +A A L D+ +L
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWDEVKDKL 143
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVIL 449
G+ LSGGQ+QR+ IARAI P +LLLDE SALD + + V+E + + T+ L
Sbjct: 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203
Query: 450 IAHRMSTIVN-ADMIAV--VEDGQVTETG 475
+ H M + AD A V+ Q T TG
Sbjct: 204 VTHNMQQAIRVADTTAFFSVDISQGTRTG 232
|
Length = 261 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 3e-22
Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 18/223 (8%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI----KDLDLKS 330
L +L+I G A +G +G GKST++ L+ + P+ G + +D I K+ D+K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 331 LRKNIGAVSQ--EPSLFTGSLMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQYS 386
+RK +G V Q E LF +++ ++ G N E+ A +A + + S
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE---AEALAREKLALVGI----S 135
Query: 387 TELGQRG-VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-G 444
L ++ +LSGGQ +R+AIA + P IL+LDE T+ LD + K + ++ Q G
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 445 RTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486
T++L+ H M + N AD + V+E G++ +G + Q DF
Sbjct: 196 MTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQDVDF 238
|
Length = 280 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-22
Identities = 63/213 (29%), Positives = 109/213 (51%), Gaps = 24/213 (11%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL---DLKS 330
+LKG SLSI G++VA+VGSSG GKST++ L+ +P++G++L + ++ L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 331 LR-KNIGAVSQEPSLFTG-SLMDNIK----VGNMDADDEQIYNASMMANAHSFISQLPDQ 384
LR K +G + Q L + ++N+ +G + + M+
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG--------- 130
Query: 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK----LVQEALER 440
+ R +LSGG++QR+AIARA+V P ++L DE T LD+ + K L+ E L R
Sbjct: 131 LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE-LNR 189
Query: 441 AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
+ +++ H + D + ++DGQ+
Sbjct: 190 E-LNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 46/180 (25%), Positives = 100/180 (55%)
Query: 27 AFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFL 86
+F S G++ + +++ +S IRD +G+KLG F S AT G ++ W+++L++
Sbjct: 90 SFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLA 149
Query: 87 VVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDC 146
++P+++++ A K++ ++ + ++A S+ E+++S I+TV AF E E++ +
Sbjct: 150 ILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKA 209
Query: 147 MDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILF 206
++ +A+ G+ G+ Q +++ +AL +W GA +V + + G V A + L
Sbjct: 210 LEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 82/248 (33%), Positives = 123/248 (49%), Gaps = 31/248 (12%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----- 939
++E + + F Y + L++ SL+ E AL+GPSG GKS+ L L R D
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 940 PNEGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG---NEAASEAEI 994
EG IL+DG+ I ++ LR ++G+V Q+P F SI N+ YG N +A +
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
E +++ H ++L D + E LSGGQ+QR+ IAR L P ++L+DE SA
Sbjct: 123 AERVERSLRH---AALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL---ATVINSDVIVVMDKGEVV 1111
LD + +E L EL +R T I V H + A V SDV G+++
Sbjct: 180 LDP----IATQKIEEL------IHELKARYTIIIVTHNMQQAARV--SDVTAFFYMGKLI 227
Query: 1112 EMGSHSTL 1119
E+G +
Sbjct: 228 EVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 4e-22
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 35/221 (15%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
F L++ G+ VA++G SG GKST+++L+A F P++G + ++ + R+ +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD--HTTTPPSRRPVSM 75
Query: 338 VSQEPSLFTG-SLMDNIKVG---NMDADDEQIYNASMMANA---HSFISQLPDQYSTELG 390
+ QE +LF+ ++ NI +G + + Q +A +++LP Q
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ------ 129
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQEAL-ERAMQGR 445
LSGGQ+QR+A+AR +V+ PILLLDE SALD E LV + ER +
Sbjct: 130 -----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL--- 181
Query: 446 TVILIAHRMSTIVNADMIA----VVEDGQVTETGTHHSLLQ 482
T+++++H + +A IA VV DG++ G LL
Sbjct: 182 TLLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 73/235 (31%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS---NGDILIDSLNI--KDLD 327
L SL ++ AL+G SG GKST++ + R D P G I+ + NI D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVG---NMDAD----DEQIYNASMMANAHSFISQ 380
LRK IG V Q+P+ F S+ +N+ G D DE + + A+
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS------- 133
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
+ D+ L + LSGGQ+QR+ IAR + +P I+LLDE TSALD S ++E L
Sbjct: 134 IWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 441 AMQGRTVILIAHRM---STIVNADMIAVVEDGQVTETGTHHSLL------QTSDF 486
T++L+ M S I +D DG + E + +T D+
Sbjct: 194 LKDDYTMLLVTRSMQQASRI--SDRTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246
|
Length = 252 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 4e-22
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 29/225 (12%)
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
+V + + S + E G L+G +GAGK+++L ++ P+ G + IDG
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF 72
Query: 959 RLRSQIGLVQQE-PLLFSCSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSLP 1011
+R +IG++ E L + R N+ Y + +A I E+SK+ + +++
Sbjct: 73 -VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL---- 127
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
D VGE S G KQ++AIAR L+ P+I++LDE TS LD + R ++ L
Sbjct: 128 ---DRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 1072 PKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
I +H + V D ++V+ KGEVV GS
Sbjct: 181 ---------NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGS 216
|
Length = 245 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-22
Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
++ +Y +P + L + SL I G V ++GPSG GK+++L L+ F P+ G I ++G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 950 KGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEA-----ASEAEIV-EVSKKAN 1002
+ I+ R G+V Q L ++ +N+ +G + A EI ++
Sbjct: 67 RRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ QLSGG +QR+ IAR L P ++LLDE ALDA
Sbjct: 122 LEGAEHKYI-----------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 31/230 (13%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-----GDILID---SLN 322
Q +L G L + G++VA++G SG GK+T++ + P GDI ID SL+
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
+ ++ LR+++G V Q +LF ++++NI G + E A A ++++
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEP--KEEATARARELLAKV 132
Query: 382 -----PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
Y +LSGGQ+QR+AIARA+ P ++L DE TSALD E LV E
Sbjct: 133 GLAGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGE 182
Query: 437 ALER----AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
L A + RT++++ H MS + AD ++ G++ E G +L
Sbjct: 183 VLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 5e-22
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 42/230 (18%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK---DLD--- 327
+LKG SL AG +++++GSSG GKST + + PS G I ++ I+ D D
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 328 -------LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDA--------DDEQIYNASMM 371
L+ LR +G V Q +L++ ++++N+ ++A E I A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENV----IEAPVHVLGVSKAEAIERAEKY 136
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
A I++ D Y LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 137 L-AKVGIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE-- 186
Query: 432 KLVQEAL----ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
LV E L + A +GRT++++ H M + + + + G++ E G
Sbjct: 187 -LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 6e-22
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 31/224 (13%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRL 960
+N+ L I G ++G SG+GKS+ + +L R +P G I IDG+ I + + LR +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 961 -RSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSLPD 1012
R +IG+V Q+ LF +I N G E + + +E+ K + ++ PD
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD 128
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
+LSGG +QR+ +AR L P I+L+DEA SALD + L+ L
Sbjct: 129 -----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177
Query: 1073 KSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
T + + H L I D IV+M GE+V++G+
Sbjct: 178 TLQK--------TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 6e-22
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ RD+C++Y + L + P +A++G +G GKST+ P++G +
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIYNASMMA 372
LI I +++ +RK +G V Q P +F+ ++ +I G N+ D+E +
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETV------- 114
Query: 373 NAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
AH S L EL R LSGG+K+R+AIA I P +L+LDE T+ LD +
Sbjct: 115 -AHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
Query: 432 KLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYN 488
K + + L + G TVI H++ + AD I V++ G++ GT + D
Sbjct: 174 KELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233
Query: 489 R 489
R
Sbjct: 234 R 234
|
Length = 277 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-22
Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 29/226 (12%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
TV++N +L I+ G V L+GPSG GK++VL L+ P EG I IDG+ + +++ +
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--Q 77
Query: 962 SQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAEIVEVSKKA-NIHDFISSLPDGY-DT 1016
I +V Q LF S+ N+ YG + E + K+A + D G+ D
Sbjct: 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----AGFEDR 132
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
V Q+SGGQ+QR+A+AR L+ +P ++L DE S LDA R S E +
Sbjct: 133 YVD----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR---SMREKIR----- 180
Query: 1077 CGELASR--TTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119
EL + T + V H + SD ++VM+KG+++++GS L
Sbjct: 181 --ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 7e-22
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 25/234 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--PS-- 312
I+IRD+ ++ +L G +L IP + AL+G SG GKST++ + R + P
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 313 -NGDILIDSLNIKDLDLKSLRKNIGAVSQEPS-LFTGSLMDNIKVG--------NMDADD 362
+G++ +D +I +D+ LR+ + V Q P+ + S+ +N+ +G +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
E++ A A QL D+ L +LSGGQ+QR+ IARA+ P +LL DE
Sbjct: 121 ERVRWALEKA-------QLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
T+ LD E+ ++ + T++L+ H +D +A + GQ+ E G
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 8e-22
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNI--KDLD 327
L ++ I + AL+G SGCGKST + + R D G+++ + NI + D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
+ LR+ IG V Q P+ F S+ DNI G + + S L ++
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTV 447
+L + LSGGQ+QR+ IAR + P ++L+DE TSALD S ++E + + T+
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
I++ H M +D A +G + E + L
Sbjct: 203 IIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-22
Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 40/233 (17%)
Query: 870 EPDAPESSESGRI------KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
+ RI I +N+ P T+L+ + ++ PG ++ + G S
Sbjct: 371 MDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGES 428
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
GAGK+S+L L + G I S + + Q P L ++R +C
Sbjct: 429 GAGKTSLLRALAGLWPWGSGRIS-----------MPADSALLFLPQRPYLPQGTLREALC 477
Query: 984 Y--GNEAASEAEIVEVSKKANIHDFISSLP--DGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
Y S+AE+V V K + D L D +D V LSGG++QR+A AR L
Sbjct: 478 YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV-------LSGGEQQRLAFARLL 530
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
L +P + LDEATSALD E+E + L+ P T I+V HR
Sbjct: 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELP----------DATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 8e-22
Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 39/254 (15%)
Query: 263 CFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321
C + ++L L S + K+ ++G+SG GKST+++ G I + +
Sbjct: 29 CVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI 88
Query: 322 NIKD----------------LDLKSLRKNIGAVSQEP--SLFTGSLMDNI-------KVG 356
I D + K LR+ + V Q P LF ++ +I V
Sbjct: 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK 148
Query: 357 NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416
+A + + M S++ + P LSGGQK+R+AIA + P I
Sbjct: 149 KSEAKKLAKFYLNKMGLDDSYLERSP-----------FGLSGGQKRRVAIAGILAIQPEI 197
Query: 417 LLLDEATSALDSESEK-LVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474
L+ DE T+ LD + E ++Q L+ +TV +I H M ++ AD + V++ G++ +T
Sbjct: 198 LIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257
Query: 475 GTHHSLLQTSDFYN 488
GT + + N
Sbjct: 258 GTPYEIFTDQHIIN 271
|
Length = 320 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 9e-22
Identities = 69/237 (29%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-- 311
D ++ + V F YP + L S SIP G AL+G +G GKST+ L+ P
Sbjct: 3 DNIVEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 312 -SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD-------E 363
N I +D + + + +R+ +G V Q P DN VG DD
Sbjct: 62 NPNSKITVDGITLTAKTVWDIREKVGIVFQNP--------DNQFVGATVGDDVAFGLENR 113
Query: 364 QIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
+ M+ ++ + D +E LSGGQKQR+AIA + P I++LDE
Sbjct: 114 AVPRPEMIKIVRDVLADVGMLDYIDSE----PANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 422 ATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
+TS LD ++ + + + + + TVI I H + AD + V++DG++ G+
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-21
Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 41/305 (13%)
Query: 844 TLIPTVISAITV------LAPAFEILDRKTEIEPDAPESSESGRIKGR-----IEFQNIK 892
TL V S+I V ++ F+ +D + + P S G IE + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFID----LPQEEPRPSGGGGKYQLSTVLVIENPHAQ 1209
Query: 893 FNYPSRPEVTV--------------LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938
+PS ++ V L + S +E G +V L+G +G+GKS++L+ LLR
Sbjct: 1210 KCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269
Query: 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVS 998
EG I IDG L+ R G++ Q+ +FS + R N+ E S+ EI +V+
Sbjct: 1270 S-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL-DPYEQWSDEEIWKVA 1327
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
++ + I PD D V+ + G LS G KQ + +AR++L + I+LLDE ++ LD
Sbjct: 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118
+ ++I L+ + S T I HR+ ++ +V++ V + S
Sbjct: 1388 TLQIIRKTLK----------QSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQK 1437
Query: 1119 LVAES 1123
L+ E+
Sbjct: 1438 LLNET 1442
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-21
Identities = 67/217 (30%), Positives = 110/217 (50%), Gaps = 27/217 (12%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338
+L+I G MV L+G SGCGK+TV+ LVA P+ G I ID ++ ++ +++I V
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83
Query: 339 SQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL------GQ 391
Q +LF SL +N+ Y M+ Q + + EL
Sbjct: 84 FQSYALFPHMSLGENVG-----------YGLKMLGVPKEERKQRVKE-ALELVDLAGFED 131
Query: 392 RGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR---TV 447
R V Q+SGGQ+QR+A+ARA++ P +LL DE S LD+ + ++E + R +Q + T
Sbjct: 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI-RELQQQFNITS 190
Query: 448 ILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLLQT 483
+ + H S +D + V+ G++ + G+ L +
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
|
Length = 351 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 1e-21
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 22/221 (9%)
Query: 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP----SNGDILIDSLNIKDLDLKSLR 332
+LS+ G+++ALVG SG GKS + P ++G+IL+D + L ++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRG-- 61
Query: 333 KNIGAVSQEP-----SLFT--GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
++I + Q P LFT ++ ++ ++ + + +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSL------GKLSKQARALILEALEAVGLPDP 115
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-- 443
L + QLSGG QR+ IA A++ PP L+ DE T+ LD ++ V + L Q
Sbjct: 116 EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLF 175
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
G ++LI H + + AD +AV++DG++ E GT +
Sbjct: 176 GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-21
Identities = 80/260 (30%), Positives = 126/260 (48%), Gaps = 54/260 (20%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL- 960
V+ N S + PG + LVG SG+GKS+ LLR ++G I DG+ + N R+L
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 961 --RSQIGLVQQEP---LLFSCSIRNNICYG--------NEAASEAEIVEVSKKANIHDFI 1007
R +I +V Q+P L ++ I G + A E +++ V ++ +
Sbjct: 359 PVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLD--- 415
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
P+ E SGGQ+QRIAIAR L+ +P++++LDE TS+LD + I++ L
Sbjct: 416 ---PETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL 468
Query: 1068 EALNPKSSSCGELASRTTQITVAHRLATV-INSDV---------IVVMDKGEVVEMGSHS 1117
++L K H+LA + I+ D+ ++V+ +GEVVE G
Sbjct: 469 KSLQQK-----------------HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511
Query: 1118 TLVAESQGVYSRLYQLQAFS 1137
+ A Q Y+R QL A S
Sbjct: 512 RVFAAPQQEYTR--QLLALS 529
|
Length = 529 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 2e-21
Identities = 66/167 (39%), Positives = 92/167 (55%), Gaps = 21/167 (12%)
Query: 918 ALVGPSGAGKSSVLALLLRFYD--PN---EGIILIDGKGI--KEYNLRRLRSQIGLVQQE 970
A++GPSG GKS+ L + R D P+ G ++ DG+ I K + LR +IG+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 971 PLLFSCSIRNNICYG------NEAASEAEIVEVS-KKANIHDFISSLPDGYDTVVGEKGC 1023
P F SI +NI YG N+ EIVE S +KA + D +S D +
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLD-------KNAL 181
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070
LSGGQ+QR+ +ARTL P I+LLDE TSALD ++ I ++ L
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
|
Length = 286 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 2e-21
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 31/230 (13%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNL 957
+ L++ S + PG L+GP+GAGK+++ L+ F P G +L DG+ G+ + +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 958 RRLRSQIGLVQQEPLLF-SCSIRNNI---------CYGNEAASEAEIVEVSKKA-NIHDF 1006
RL IG Q P LF ++ N+ A + E E ++A + +
Sbjct: 73 ARLG--IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLER 130
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
+ L D D GE LS GQ++R+ IAR L P ++LLDE + L+ E +
Sbjct: 131 V-GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ L T + V H + V++ +D + V+D+G V+ G+
Sbjct: 186 IRELR---------ERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-21
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
+LNN S + G + GPSG GKS++L ++ P G +L +G+ I R
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 962 SQIGLVQQEPLLFSCSIRNNICYG----NEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017
Q+ Q P LF ++ +N+ + N+ A + ++ F +LP DT+
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL-----DDLERF--ALP---DTI 130
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
+ + +LSGG+KQRI++ R L P ++LLDE TSALD ES + V
Sbjct: 131 LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD-ESNKHNV 176
|
Length = 225 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-21
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 29/222 (13%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T L + SL ++ G V L+GPSG GK+++L ++ G I G+ I L +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75
Query: 962 SQIGLVQQEPLLF-SCSIRNNICYG--NEAASEAEIVEVSKKANIHDFISSLPDGYDTVV 1018
G+V Q LF + ++ +NI YG N AE+ E + A + D + LP
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAELLDLVG-LPG-----S 127
Query: 1019 GEK-GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSC 1077
K QLSGGQ+QR+A+AR L P ++LLDE SALDA RV +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDA---RVREHLRTEIR------ 178
Query: 1078 GELASR--TTQITVAH--RLATVINSDVIVVMDKGEVVEMGS 1115
+L R T I V H A + +D IVVM+ G + ++G+
Sbjct: 179 -QLQRRLGVTTIMVTHDQEEALSM-ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 38/228 (16%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYN 956
E+++L L ++ G VA+VGPSG+GKS++LA+L DP+ G + + G+ + E
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81
Query: 957 LRRLRSQ-IGLVQQ-----------EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
LR++ +G V Q E + +R + A S A + + +
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE----SSADSRAGAKALLEAVGLG 137
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
++ P QLSGG++QR+A+AR RP ++ DE T LD + I
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112
L ALN + TT + V H D + + G +VE
Sbjct: 187 DLLFALNRERG--------TTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 3e-21
Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNI-- 323
++KG L IP + AL+G SGCGKST++ R + + G++ + NI
Sbjct: 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG--------NMDADDEQIYNASMMANA 374
D+D +R+ +G V Q P+ F ++ DN+ +G + DE++ A A
Sbjct: 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKA-- 133
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
L D+ L LSGGQ+QR+ IARA+ P ILL+DE T+ +D +
Sbjct: 134 -----ALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI 188
Query: 435 QEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+E L + T++L+ H + +D +A + G++ E G
Sbjct: 189 EELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 4e-21
Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 36/230 (15%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK +L I G+M+A+ GS+G GK++++ L+ +PS G I K
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI----------------K 95
Query: 334 NIGAVSQEPS---LFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTEL 389
+ G +S + G++ +NI G + DE Y + + A I++ P++ +T L
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVL 153
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVI 448
G+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK + E+ + + M +T I
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRI 213
Query: 449 LIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
L+ +M + AD I ++ +G +S FY +Q+LRP
Sbjct: 214 LVTSKMEHLKKADKILILHEG-------------SSYFYGTFSELQSLRP 250
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 5e-21
Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 33/248 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN-- 941
+ +N+ Y + L + ++ I AL+GPSG GKS++L R D P
Sbjct: 7 LSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 942 -EGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
G IL +G+ I + ++ LR +IG+V Q P F SI N+ YG +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
IVE S K ++L D + + LSGGQ+QR+ IARTL P ++L+DE
Sbjct: 124 TIVEKSLKG------AALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPC 177
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111
SALD + + +E L +L T I V H + SD M G+++
Sbjct: 178 SALDP----IATAKIEDL------IEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227
Query: 1112 EMGSHSTL 1119
E + +
Sbjct: 228 EFDKTTQI 235
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 5e-21
Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 29/218 (13%)
Query: 919 LVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CS 977
L+GPSG GK+++L LL F P+ G I++DG+ + LR I +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRH-INMVFQSYALFPHMT 58
Query: 978 IRNNICYG----NEAASE--AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031
+ N+ +G +E ++E + + +F P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107
Query: 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091
R+A+AR L+ +P I+LLDE SALD + + L+ + + T + V H
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG--------ITFVFVTH 159
Query: 1092 RLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYS 1128
+ SD I +M KG++ ++G+ + E ++
Sbjct: 160 DQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 5e-21
Identities = 83/261 (31%), Positives = 119/261 (45%), Gaps = 47/261 (18%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKS----SVLALL-LRFYDPNEGIILIDGK---G 951
V + S IE G +ALVG SG+GKS S+L LL G IL DG+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 952 IKEYNLRRLR-SQIGLVQQEPL-----LFSCSIRNNICYG-------NEAASEAEIVEVS 998
E LR +R ++IG++ QEP+ L + I + + AA+ A +E+
Sbjct: 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHT--IGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 999 KKANIHD---FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+ I + + + P +LSGGQ+QR+ IA L P +++ DE T+AL
Sbjct: 140 ELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D + I+ L+ L EL IT H L V +D + VM GE+VE G
Sbjct: 189 DVTVQAQILDLLKELQ------AELGMAILFIT--HDLGIVRKFADRVYVMQHGEIVETG 240
Query: 1115 SHSTLVAESQGVYSRLYQLQA 1135
+ TL A Q Y+R L A
Sbjct: 241 TTETLFAAPQHPYTRK-LLAA 260
|
Length = 534 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 5e-21
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 48/233 (20%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN--- 956
+ VL SL I G VA+VG SG+GKS++L LL +P G +L +G+ + + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 957 LRRLRSQ-IGLVQQ---------------EPLLFSCSIRNNICYGNEAASEA-EIVEVSK 999
+LR++ +G + Q PLL + ++ E A E E V +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEH 133
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ N + +LSGG++QR+AIAR L+ +P+++L DE T LD +
Sbjct: 134 RIN-----------------HRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN 176
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112
++I + LN T+ + V H L D ++ M G++
Sbjct: 177 AKIIFDLMLELNR--------ELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-21
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 257 IDIRDVCFAY-PSRPDQLI-LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I +V + Y P P + L S + G VALVG +G GKST++ PS+G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 315 DILID----SLNIKDLDLKSLRKNIGAVSQ--EPSLFTGSLMDNIKVG--NMDADDEQIY 366
I I + + +LK LRK + V Q E LF +++ +++ G N +++
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 367 NASMMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
A ++ + L + + + +LSGGQ +R+AIA + P IL LDE +
Sbjct: 123 EK-----ALKWLKKVGLSEDL---ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174
Query: 425 ALDSESEK-LVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
LD E K ++Q + G TVIL+ H M + AD + V+E G++
Sbjct: 175 GLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-21
Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 34/234 (14%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
++ +R+V AY D +I K +L I G+ V VG SGCGKST++ ++A D ++GD
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGN--MDADDEQIYNASMMA 372
+ I + D+ + +G V Q +L+ S+ +N+ G A E+I
Sbjct: 60 LFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ---RV 114
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
N + + QL + L ++ LSGGQ+QR+AI R +V P + LLDE S LD+
Sbjct: 115 NQVAEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA---- 166
Query: 433 LVQEALERAMQ----------GRTVILIAH-RMSTIVNADMIAVVEDGQVTETG 475
AL M+ GRT+I + H ++ + AD I V++ G+V + G
Sbjct: 167 ----ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 6e-21
Identities = 74/201 (36%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI- 944
IE +N+ Y + LNN +++I AL+GPSG GKS+ L L R D EGI
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 945 ----ILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
++ +GK I +++ LR +IG+V Q P F SI +NI YG +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
EIVE S K S+L + + LSGGQ+QR+ IARTL P ++L+DE T
Sbjct: 125 EIVEQSLKK------SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178
Query: 1053 SALDAES----ERVIVSALEA 1069
SALD S E +I++ E+
Sbjct: 179 SALDPISTGKIEELIINLKES 199
|
Length = 254 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 6e-21
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 269 RPDQLI--LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL 326
+P++L+ L G S ++ GK +A+VG SGCGKST+ L+ P+ G++ ++
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82
Query: 327 D---LKSLRKNIGAVSQEPSLFTGSLMDNIKVG-----------NMDADDEQIYNASMMA 372
D K LR+ I V Q P GSL KVG ++ A + + +MMA
Sbjct: 83 DPEAQKLLRQKIQIVFQNP---YGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA 139
Query: 373 NAHSFISQLPDQYSTELGQRGVQL-SGGQKQRIAIARAIVKNPPILLLDEATSALD 427
+ P+ Y R + SGGQ+QRIAIARA++ +P +++ DE SALD
Sbjct: 140 K----VGLRPEHY-----DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 9e-21
Identities = 63/168 (37%), Positives = 87/168 (51%), Gaps = 22/168 (13%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEYNLR 958
L + L I A +GPSG GKS+ L L R D G I +DG+ I + L
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 959 --RLRSQIGLVQQEPLLFSCSIRNNICYGNE----AASEAE---IVEVS-KKANIHDFIS 1008
LR+++G+V Q+P F SI N+ YG A S+AE IVE S +KA + + +
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+ E G LSGGQ+QR+ IAR + P ++L+DE SALD
Sbjct: 155 DR-------LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
|
Length = 267 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-20
Identities = 78/240 (32%), Positives = 115/240 (47%), Gaps = 26/240 (10%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----- 939
+I+ +N+ Y E L N S+QI AL+GPSG GKS+ + L R D
Sbjct: 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 940 PNEGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AASEAEIV 995
EG + I+G+ I + ++ LR +G+V Q+P F SI +N+ YG A++ ++
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
V + A ++L D + LSGGQ+QR+ IARTL +P I+L DE TSAL
Sbjct: 129 GVVENALRS---AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D S + +E L L T + V H + SD GE++E G
Sbjct: 186 DPIS----TARIEDL------IMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (234), Expect = 1e-20
Identities = 82/263 (31%), Positives = 126/263 (47%), Gaps = 39/263 (14%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PN 941
E +N F Y +R + VL++ +L I+ A +GPSG GKS+ L L + D +
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 942 EGIILIDGKGIKEYNLR--RLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEAE 993
EG I G + + LR++IG+V Q+P F SI +N+ YG N+ +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
IVE S K+ ++L D + + G LSGGQ+QR+ IAR + P ++L+DE TS
Sbjct: 201 IVEKSLKS------AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 1054 ALD----AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108
ALD A+ E +I+ EL + + I V H +A SD V +G
Sbjct: 255 ALDPIATAKIEELIL--------------ELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300
Query: 1109 EVVEMGSHSTLVAESQGVYSRLY 1131
+ E G T+ + ++ Y
Sbjct: 301 WIEEAGETKTIFIHPKNKRTKDY 323
|
Length = 329 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-20
Identities = 69/241 (28%), Positives = 126/241 (52%), Gaps = 26/241 (10%)
Query: 886 IEFQNIKFNYPS-RP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I QN+ + Y + P E L + +L IE G A +G +G+GKS+++ LL + P +G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 944 IILIDGKGI----KEYNLRRLRSQIGLVQQ--EPLLFSCSIRNNICYG--NEAASEAEIV 995
+ +D I K +++++R ++GLV Q E LF ++ ++ +G N S+ E
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
++++ IS +++ + +LSGGQ +R+AIA L P I++LDE T+ L
Sbjct: 123 ALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D + + +++ + L+ S T + V H + V N +D + V++KG++V G
Sbjct: 177 DPKGRKELMTLFKKLH---------QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
Query: 1115 S 1115
Sbjct: 228 K 228
|
Length = 280 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-20
Identities = 62/246 (25%), Positives = 114/246 (46%), Gaps = 23/246 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ D+ +Y S+ ++ S G++ L+G +G GK+T++ ++A P +G +
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
ID ++ D +R+ IG + E L+ + A + Y A + +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYA----------RLTARENLKYFARLNGLSRK 108
Query: 377 FISQLPDQYSTELG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
I + S L +R + S G KQ++AIARA+V +P IL+LDE TS LD +
Sbjct: 109 EIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 431 EKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT--SDF 486
+ + +++ +GR VI +H M + D + V+ G+V G+ +L
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRN 228
Query: 487 YNRLFT 492
+F
Sbjct: 229 LEEIFA 234
|
Length = 245 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 1e-20
Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 23/234 (9%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL N +L+IE G +A+ G +G+GK+S+L L+L +P+EG I G+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I+ NI +G + E V K + + I+ P+ +TV+GE G
Sbjct: 100 -ISFSSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD LD +E+ I +S C +A+
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF--------ESCVCKLMAN 209
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V ++ + +D I+++ +G G+ S L + S+L F
Sbjct: 210 K-TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTF 262
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (230), Expect = 1e-20
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 7/219 (3%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-----DILIDSLNIKDL 326
+ +L S+ PA + +L+G +G GK+T + + R D +G D+L+ +I +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 327 -DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
D+ R+ +G + Q P+ F S+MDN+ G +A A L D
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
L +LSGGQ+Q + +AR + NP +LLLDE TSALD + + ++E +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
TVI++ H ++ +D A+ DG++ E G L +
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 55/210 (26%), Positives = 104/210 (49%), Gaps = 38/210 (18%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
+ D+ +L+ SL++ G+ + LVG +G GKST++ ++A +P +G++ ++
Sbjct: 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLR--- 67
Query: 328 LKSLRKNIGAVSQEPSLFTGS------LMDNIKVGNMDADDEQIYNASMMANAH-----S 376
+G +SQEP L + ++ + A+ E+ Y +
Sbjct: 68 -------VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 377 FISQLPDQYSTE---------LGQRGVQ-----LSGGQKQRIAIARAIVKNPPILLLDEA 422
+ + D ++ E LG LSGG ++R+A+ARA+++ P +LLLDE
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEP 180
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAH 452
T+ LD ES + +++ L + G TVI+++H
Sbjct: 181 TNHLDLESIEWLEDYL-KRYPG-TVIVVSH 208
|
Length = 530 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 2e-20
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ ++ F Y D L G S SI G+ V+++G +G GKST L+ ++ G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEP-SLFTGSLM-DNIKVG--NMDADDEQIYN----A 368
ID + ++ +LR+ IG V Q P + F G+ + D++ G N E++ A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD- 427
+ N F ++ P +LSGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 428 ---SESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS 484
E +++ E E+ TV+ I H + ++D I V++ G++ + L TS
Sbjct: 174 TGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 485 D 485
+
Sbjct: 232 E 232
|
Length = 277 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 50/251 (19%)
Query: 257 IDIRDVCFAYPSRP-------DQLI-LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308
+++ D+ +P + D L + G SL++ G+ + LVG SG GKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 309 YDPSNGDILIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM------- 358
PS G+I D +I L ++ LR+ + V Q+P GSL + VG +
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP---YGSLSPRMTVGQIIEEGLRV 392
Query: 359 ------DADDEQIYNASMMANAHSFISQLP----DQYSTELGQRGVQLSGGQKQRIAIAR 408
A+ +Q ++ L ++Y E SGGQ+QRIAIAR
Sbjct: 393 HEPKLSAAERDQRVIEALEE------VGLDPATRNRYPHEF-------SGGQRQRIAIAR 439
Query: 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR---TVILIAHRMSTI-VNADMIA 464
A++ P ++LLDE TSALD + V + L R +Q + + + I+H ++ + +
Sbjct: 440 ALILKPELILLDEPTSALDRSVQAQVLDLL-RDLQQKHGLSYLFISHDLAVVRALCHRVI 498
Query: 465 VVEDGQVTETG 475
V+ DG++ E G
Sbjct: 499 VMRDGKIVEQG 509
|
Length = 534 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 2e-20
Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 38/240 (15%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++ R++ R +L SL++ G++VA++G +G GKST++ ++ P +G++
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL---FTGS---LMDNIKVGNMDADDEQIYNASM 370
++ + D L + + Q SL FT M G A+D+ + A++
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 371 MANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIV------KNPPILLLDEAT 423
D L R QLSGG++QR+ +AR + P LLLDE T
Sbjct: 120 ---------AQVD--LAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 424 SALD-SESEKLVQEALERAM-QGRTVILIAHRMSTIVN-----ADMIAVVEDGQVTETGT 476
SALD + +++ A + A +G VI++ H +N AD I ++ G++ GT
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHD----LNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 76/281 (27%), Positives = 134/281 (47%), Gaps = 53/281 (18%)
Query: 250 LEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY 309
+ K+ I + ++ F Y + Q IL+G S+ I K+ A++G SGCGKST + + R
Sbjct: 1 MSKLIPAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 310 DPSN-----GDILIDSLNI--KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG------ 356
+ + G + + NI + ++L LR+ + V +P+LF S+ DN+ G
Sbjct: 58 ELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 357 --NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414
++ DD I +++ + L D+ ++ + + LSGGQ+QR+ IARA+ P
Sbjct: 118 RPKLEIDD--IVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKP 169
Query: 415 PILLLDEATSALDSES----EKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVED- 468
+LL+DE LD + E L+Q R+ T+++++H + + +D A +
Sbjct: 170 KVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL--TMVIVSHNLHQVSRLSDFTAFFKGN 227
Query: 469 ----GQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
GQ+ E G ++F P DSRT+
Sbjct: 228 ENRIGQLVEFGL----------TKKIFN----SPH-DSRTR 253
|
Length = 261 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
Y R ++ SL + +G++V L+G +G GK+T ++ P +G IL+D +I
Sbjct: 14 YKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70
Query: 326 LDL-KSLRKNIGAVSQEPSLFTG-SLMDNIK-VGNMDADDEQIYNASMMANA--HSF-IS 379
L + K R IG + QE S+F ++ DNI V + D + +A F I+
Sbjct: 71 LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT 130
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQ 435
L D + LSGG+++R+ IARA+ NP +LLDE + +D + +++++
Sbjct: 131 HLRDS-------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 436 EALERAMQGRTVILIA-HRM-STIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
+R + +LI H + T+ D ++ DG+V G+ ++ D
Sbjct: 184 HLKDRGIG----VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-20
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 28/186 (15%)
Query: 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
+ +N+ +Y R V+N+ SL++ G V L+GP+GAGK++ +++ P+
Sbjct: 2 MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 943 GIILIDGKGIKEYNL-RRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKK 1000
G IL+D + I + + +R R IG + QE +F ++ +NI A EI E K
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI----MAV--LEIREKDLK 112
Query: 1001 AN---------IHDF-ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ +F I+ L D K LSGG+++R+ IAR L P +LLDE
Sbjct: 113 KAERKEELDALLEEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDE 165
Query: 1051 ATSALD 1056
+ +D
Sbjct: 166 PFAGVD 171
|
Length = 243 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 14/237 (5%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF---YDPS-- 312
D+ ++ Y D+ ILK ++ IP + ++G SG GKST++ ++ R YD
Sbjct: 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIK 68
Query: 313 -NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKV---GNMDADDEQIYN 367
+G +L +I +D LRK +G V Q+P+ F S+ DNI + + +I
Sbjct: 69 VDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI-- 126
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
++ + + Y L QLSGGQ+QR+ IARA+ P +LL+DE TS +D
Sbjct: 127 KKIVEECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMID 185
Query: 428 SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
+ + +++ + +++++H + AD +A + +G++ E G+ + + +
Sbjct: 186 IVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 2e-20
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 896 PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955
+ V ++ S ++PG L+GP+GAGK++ L +L +P+ G +DG + +
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK- 71
Query: 956 NLRRLRSQIGLVQQEPLLFS-CSIRNNICY-----G-NEAASEAEIVEVSKKANIHDFIS 1008
R ++G V L+ + R N+ Y G A + E++ + + + +
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL- 130
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
D VG S G +Q++AIAR L+ P ++LLDE T+ LD + R + +
Sbjct: 131 ------DRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
L ++ L S T + RL D +VV+ +G VV G
Sbjct: 181 QL--RALGKCILFS-THIMQEVERLC-----DRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-20
Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 34/251 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ + + +NY L ++ I+ G A++G +GAGKS++ L P+ G I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 946 LIDGKGIKEYN---LRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVS 998
L DGK I +Y+ L +LR +G+V Q+P LFS S+ ++ +G N E E+ +
Sbjct: 64 LFDGKPI-DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD-- 1056
A I L D + LS GQK+R+AIA L+ P +++LDE T+ LD
Sbjct: 123 DNALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
Query: 1057 --AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEM 1113
+E +++V + L T I H + V + D + VM +G V+
Sbjct: 176 GVSEIMKLLVEMQKELG------------LTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223
Query: 1114 GSHSTLVAESQ 1124
G+ + AE +
Sbjct: 224 GNPKEVFAEKE 234
|
Length = 283 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-20
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
Y +P L+ +L++ +G+++ ++G SGCGK+T+++L+A F +G I +D ++
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 326 LDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQ 384
+ G V Q L ++ DN+ G Q+ M L
Sbjct: 68 PGAER-----GVVFQNEGLLPWRNVQDNVAFG------LQLAGVEKMQRLEIAHQMLKKV 116
Query: 385 YSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
+R + QLSGGQ+QR+ IARA+ NP +LLLDE ALD+ + + +Q L + Q
Sbjct: 117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ 176
Query: 444 --GRTVILIAH 452
G+ V+LI H
Sbjct: 177 ETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 34/257 (13%)
Query: 871 PDAPESSESGRIKGR---IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGK 927
P+ E + I+ IE +N+ + +L + S Q+ PG A+VGP+GAGK
Sbjct: 14 PEPKEPKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGK 70
Query: 928 SSVLALLLRFYDPNEGIILIDGK--GIKEYNLRRLRSQIGLV---QQEPLLFSCSIRNNI 982
+++L+LL + P+ G + + G+ G E LR +IGLV E ++R+ +
Sbjct: 71 TTLLSLLTGEHPPSSGDVTLLGRRFGKGETI-FELRKRIGLVSSELHERFRVRETVRDVV 129
Query: 983 CYG-------NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035
G + AE + ++ L D LS G+++R+ I
Sbjct: 130 LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRP-------FGSLSQGEQRRVLI 182
Query: 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095
AR L+K P +++LDE LD + +++ LE L + + V H
Sbjct: 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGA-------PALLFVTHHAEE 235
Query: 1096 VINS-DVIVVMDKGEVV 1111
+ +++ +GEVV
Sbjct: 236 IPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 4e-20
Identities = 76/242 (31%), Positives = 113/242 (46%), Gaps = 31/242 (12%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-----ILIDGKGI-KEYNL 957
L + +L I AL+GPSG GKS++L L R D EG+ + +DG+ I ++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLP 1011
LR ++G+V Q+P F SI N+ YG A E+VE S + ++L
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG------AALW 132
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
D + LSGGQ+QR+ IART+ P ++L+DE TSALD + I +E
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME--- 189
Query: 1072 PKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
EL T + V H + A I SD GE+VE + + + ++
Sbjct: 190 -------ELKKNYTIVIVTHSMQQARRI-SDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
Query: 1130 LY 1131
Y
Sbjct: 242 GY 243
|
Length = 249 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 22/206 (10%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
L S S+ G++ L+G +G GK+T I ++ P +G++L D + R
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA----RN 70
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG--- 390
IG + +E L+ +KV D+ +Y A + + D++ L
Sbjct: 71 RIGYLPEERGLYP-----KMKVI-----DQLVYLAQLKGLKKEEARRRIDEWLERLELSE 120
Query: 391 ---QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL-ERAMQGRT 446
+R +LS G +Q++ A++ +P +L+LDE S LD + +L+++ + E A G+T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 447 VILIAHRMSTIVN-ADMIAVVEDGQV 471
VIL H+M + D + ++ G+
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 24/239 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ ++ Y R ++ G SLS+ G++V L+G +G GK+T ++ P +G I
Sbjct: 1 LRAENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 317 LIDSLNIKDLDL-KSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANA 374
L+D +I L + K R IG + QE S+F ++ +NI A E +
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL-----AVLEIRGLSK--KER 110
Query: 375 HSFISQLPDQYSTE--LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----S 428
+ +L +++ + LSGG+++R+ IARA+ NP LLLDE + +D
Sbjct: 111 EEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 429 ESEKLVQEALERAMQGRTVILIA-HRMS-TIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
+ +K+++ +R + +LI H + T+ D ++ +G+V GT +
Sbjct: 171 DIQKIIKILKDRGIG----VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 4e-20
Identities = 65/211 (30%), Positives = 115/211 (54%), Gaps = 17/211 (8%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331
Q + SL+I G++ AL+G+SGCGKST++ ++A F P+ G I++D +++ +
Sbjct: 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV--PPY 89
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
++ I + Q +LF ++ NI G +++ A + + + + + Q E
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFG---LKQDKLPKAEIASRVNEMLGLVHMQ---EFA 143
Query: 391 QRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ----EALERAMQGR 445
+R QLSGGQ+QR+A+AR++ K P +LLLDE ALD + +Q + LER G
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV--GV 201
Query: 446 TVILIAH-RMSTIVNADMIAVVEDGQVTETG 475
T +++ H + + A IA++ G+ + G
Sbjct: 202 TCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 5e-20
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 21/167 (12%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGI--KEYN 956
L N +L I A++GPSG GKS+ + L R + G IL + I K Y+
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEAEIVEVS-KKANIHDFISS 1009
+ LR+ +G+V Q+P F SI +N+ YG + + EIVE S + A I D
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---E 156
Query: 1010 LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
L D LSGGQ+QR+ IAR L P ++L+DE TSALD
Sbjct: 157 LKDRLHD----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-20
Identities = 61/242 (25%), Positives = 114/242 (47%), Gaps = 31/242 (12%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
ID+ D+ D +L G LS+ G +V LVG +G GK+T++ + P+ G +
Sbjct: 4 IDVSDLSV---EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL-FTGSLMDNIKVG---------NMDADDEQIY 366
L+ +++ L ++ + + +V Q+ SL F + +++G D
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
+M + ++Q D+ T LSGG++QR+ +ARA+ + P+LLLDE T++L
Sbjct: 121 ERAM---ERTGVAQFADRPVTS-------LSGGERQRVLLARALAQATPVLLLDEPTASL 170
Query: 427 DSESE----KLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
D + +LV+ ++ G+T + H + D + ++ DG+V G +L
Sbjct: 171 DINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
Query: 482 QT 483
Sbjct: 228 TA 229
|
Length = 402 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 5e-20
Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 49/221 (22%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNL 957
+L +L I+ G AL+GP+G+GKS++ ++ Y+ EG IL G+ I +
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 958 -RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016
R R I L Q P EI V DF+ + +G
Sbjct: 72 EERARLGIFLAFQYP--------------------PEIPGVK----NADFLRYVNEG--- 104
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
SGG+K+R I + LL P + +LDE S LD ++ R++ + L + S
Sbjct: 105 --------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1077 CGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMGS 1115
+ + H RL I D + V+ G +V+ G
Sbjct: 157 V---------LIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 6e-20
Identities = 79/238 (33%), Positives = 106/238 (44%), Gaps = 32/238 (13%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-----ILIDGKG 951
S L+ SL E AL+GPSG GKS+ L L R D E I I +G+
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 952 I--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAAS-------EAEIVEVSKKAN 1002
I + +L LR ++G+V Q+P F S+ +N+ YG + A + + E K+A
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAA 132
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
I D D SGGQ+QRI IAR L RP ++LLDE TSALD S
Sbjct: 133 IW---KETKDNLD----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119
I L EL + T I V H L SD + G+++E G +
Sbjct: 186 IEETLM----------ELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 6e-20
Identities = 70/202 (34%), Positives = 105/202 (51%), Gaps = 30/202 (14%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI---KDLD--- 327
+LKG SL AG +++++GSSG GKST + + PS G I+++ I +D D
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 328 -------LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFIS 379
L+ LR + V Q +L++ ++++N+ M+A Q+ S +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV----MEAP-IQVLGLSKQEARERAVK 134
Query: 380 QLPDQYSTELGQRG--VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L E Q V LSGGQ+QR++IARA+ P +LL DE TSALD E LV E
Sbjct: 135 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEV 191
Query: 438 LERAMQ-----GRTVILIAHRM 454
L R MQ G+T++++ H M
Sbjct: 192 L-RIMQQLAEEGKTMVVVTHEM 212
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 6e-20
Identities = 60/217 (27%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLDL-KS 330
ILKG +L++ G++ A++G +G GKST+ + Y+ + G+IL D +I +L +
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
R I Q P G + D ++ + + + FI +L + + L
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAA---MNARRGARGILPE----FIKEL-KEKAELL 130
Query: 390 G------QRGVQ--LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER- 440
G +R V SGG+K+R I + ++ P + +LDE S LD ++ K+V E +
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190
Query: 441 AMQGRTVILIAH--RMSTIVNADMIAVVEDGQVTETG 475
+GR V++I H R+ + D + V+ DG++ ++G
Sbjct: 191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 7e-20
Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 22/164 (13%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRL 960
+N+ SL +E G ++G SG+GKS+++ LL R +P G IL+DGK I + + LR L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 961 R-SQIGLV-QQEPLLFSCSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSLPD 1012
R +I +V Q LL ++ N+ +G +A E +E + + + P+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+LSGG +QR+ +AR L P I+L+DEA SALD
Sbjct: 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 7e-20
Identities = 80/242 (33%), Positives = 110/242 (45%), Gaps = 32/242 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE--- 942
I QN+ +Y + V N I G AL+GPSG GKS+VL L R D E
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 943 --GIILIDGKGIKEYNLR--RLRSQIGLVQQEPLLFSCSIRNNICYGNE----AASEAEI 994
G +L DG + + + +R +IG+V Q+P F SI NI +G E+
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 995 VEVS-KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
VE S +KA + D + D + E G LSGGQ+QR+ IART+ P ++L+DE S
Sbjct: 131 VERSLRKAAVWD------ECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113
ALD S I + EL T + V H + + + E VE
Sbjct: 184 ALDPISTLKIEETMH----------ELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEG 233
Query: 1114 GS 1115
GS
Sbjct: 234 GS 235
|
Length = 269 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 7e-20
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 23/234 (9%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
VL N S ++E G +A+ G +G+GKSS+L +++ +P+EG I G+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488
Query: 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022
I Q + +I++NI +G + E V K + + I+ P+ TV+GE G
Sbjct: 489 -ISFSPQTSWIMPGTIKDNIIFG-LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082
LSGGQ+ RI++AR + K + LLD + LD +E+ I +S C +++
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF--------ESCLCKLMSN 598
Query: 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ T+I V +L + +D I+++ +G G+ S L A+ S L L+AF
Sbjct: 599 K-TRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAF 651
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 7e-20
Identities = 68/278 (24%), Positives = 124/278 (44%), Gaps = 23/278 (8%)
Query: 201 VMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260
V+ +LF L A + A+ A F ++ P + + + +++R
Sbjct: 269 VLVLLFLRTPLLSAVGILPTLLTAQVA-FNKIAKLELAPYKADFPRPQAFPDWKT-LELR 326
Query: 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320
+V FAY + + +L+I G++V L+G +G GKST+ L+ Y P +G+IL+D
Sbjct: 327 NVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 321 LNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQ 380
+ L+ RK AV + LF L + ++ +
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLL--------------GPEGKASPQLIEKWLQR 430
Query: 381 LPDQYSTELGQRGV---QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L + T L +LS GQK+R+A+ A+++ IL+LDE + D + +
Sbjct: 431 LELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490
Query: 438 LERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
L + QG+T+ I+H ++AD + + +GQ++E
Sbjct: 491 LLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 7e-20
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID-SLNIKDLDLKSLR 332
+LK S G+++A++GSSG GK+T+++ +A F P LN +D K +R
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 333 KNIGAVSQEPSLFTGSL-------------MDN--IKVGNMDADDEQIYNASMMANAHSF 377
I A Q+ LF +L M K + DE + + A++
Sbjct: 99 A-ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR 157
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
I R LSGG+++R+A A ++ +PP+L DE TS LDS V +
Sbjct: 158 IGV---------PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 438 LER-AMQGRTVILIAHRMSTIV--NADMIAVVEDGQVTETGTHHSLLQ 482
L+ A +G+T+I H+ S+ + D I ++ +G+V G+ +
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-20
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 37/198 (18%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N+ Y RP +L N SL + PG ++ LVG +GAGKS++L +L +P+ G +
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN----------EAASEAEIV 995
KG++ L Q+ PL ++ + + G E A
Sbjct: 61 TRP-KGLRVGYLS---------QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLAD 110
Query: 996 EVSKKANIHDFISSLPDGYD------TVVGEKGC--------QLSGGQKQRIAIARTLLK 1041
+ + + DG+ + G LSGG ++R+A+AR LL+
Sbjct: 111 PDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLE 170
Query: 1042 RPAIMLLDEATSALDAES 1059
P ++LLDE T+ LD ES
Sbjct: 171 EPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 8e-20
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 244 SSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVIS 303
K +E + I++++V + IL S + G+ A+VG +G GK+T++S
Sbjct: 19 PKKRHPIEINEPLIELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLS 75
Query: 304 LVARFYDPSNGDILIDSLNIKDLDLKS-LRKNIGAVSQE---------------PSLFTG 347
L+ + PS+GD+ + + LRK IG VS E S F
Sbjct: 76 LLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFA 135
Query: 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407
S+ + D E + A + L D+ LS G+++R+ IA
Sbjct: 136 SIG----IYQEDLTAEDLAAAQWLLELL-GAKHLADRPFG-------SLSQGEQRRVLIA 183
Query: 408 RAIVKNPPILLLDEATSALDSES-EKLVQEALERAM--QGRTVILIAHR 453
RA+VK+P +L+LDE LD + E+L+ E A ++ + H
Sbjct: 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
|
Length = 257 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 9e-20
Identities = 70/197 (35%), Positives = 99/197 (50%), Gaps = 29/197 (14%)
Query: 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN---EGIILIDGKGI--KEYNLRRLR 961
L+I +A +GPSG GKS++L R D P EG +L + I + N +LR
Sbjct: 41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLR 100
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGNEA----ASEAEIVEVS-KKANIHDFISSLPDGYDT 1016
Q+G+V Q P F SI NI + A + E+VE S ++A I + +
Sbjct: 101 RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD------- 153
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
+ EKG LSGGQ+QR+ IAR + +P ++L+DE SALD S R + E L
Sbjct: 154 KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQV----EEL------ 203
Query: 1077 CGELASRTTQITVAHRL 1093
C EL + T I V H +
Sbjct: 204 CLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 9e-20
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
+ G S ++ G++ L+G +G GK+T + ++A +P G +D ++ + R+
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRR 79
Query: 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMM----ANAHSFISQLPDQYSTE-- 388
+G VS L+ + A + Y A + + + +L D+ E
Sbjct: 80 LGFVSDSTGLYD----------RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL 129
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTV 447
L +R S G +Q++AIARA+V +PP+LLLDE T+ LD + + ++E + + G+ +
Sbjct: 130 LDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCI 189
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+ H M + D + V+ G+V G
Sbjct: 190 LFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-19
Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 30/240 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N F++ S+ E L+N +L + G VA+VG +G GK+S+++ +L P
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN--EAASEAEIVEVSKKANI 1003
++ +R + V Q +F+ ++R+NI +G+ + ++V+ A
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVT--ALQ 720
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
HD + LP G T +GE+G +SGGQKQR+++AR + + + D+ SALDA R +
Sbjct: 721 HD-LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
Query: 1064 VSALEALNPKSSSC--GELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
C EL T++ V ++L + D I+++ +G + E G++ L
Sbjct: 780 F----------DKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 40/236 (16%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
+T +N+ SL++ PG V L+GP+GAGK+++ L+ FY P+ G ++ G+ I R
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR- 75
Query: 961 RSQIGLVQ--QEPLLFS---------------CSIRNNICYGNEAASEAEIVEVSKKANI 1003
+++G+ + Q LF + + E E E + +
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RAREL 133
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F+ L + D G LS GQ++R+ IAR L +P ++LLDE + L+ E +
Sbjct: 134 LEFVG-LGELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1064 VSALEALNPKSSSCGELASRTTQITVA---HRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ L +T+ H + V+ +D IVV++ GEV+ G+
Sbjct: 189 AELIRELR-----------DRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-19
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 275 LKGFSLSI----PAGKMVALVGSSGCGKSTVISLVARFYDPS------NGDILIDSLNIK 324
L F+L PA + AL G SG GK+++I+++A P NG +L+D+ K
Sbjct: 10 LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE--K 67
Query: 325 DLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD 383
+ L ++ IG V Q+ LF ++ N++ G + Q + I L
Sbjct: 68 GIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHL-- 121
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AM 442
L + LSGG+KQR+AI RA++ P +LL+DE ++LD ++ + LER
Sbjct: 122 -----LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176
Query: 443 QGRTVIL-IAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486
+ IL ++H + ++ AD + V+E+G+V +G + + DF
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDF 222
|
Length = 352 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 67/240 (27%), Positives = 118/240 (49%), Gaps = 32/240 (13%)
Query: 257 IDIRDVCFAYPS------RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
+++RDV Y + + +L SLSI G+ V L+G SGCGKST+ L+
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 311 PSNGDILIDSLNIKDLD---LKSLRKNIGAVSQE-PSLFT---------GSLMDNIKVGN 357
P+ G + ++ LD ++ R+++ V Q+ PS G + ++ +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--S 120
Query: 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417
+D +++ A ++ + L + + +L + QLSGGQ QRI IARA+ P ++
Sbjct: 121 LDESEQKARIAELLD-----MVGLRSEDADKLPR---QLSGGQLQRINIARALAVKPKLI 172
Query: 418 LLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474
+LDEA S LD + ++ E L + Q G + I H + + + +AV++ GQ+ E
Sbjct: 173 VLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 73/233 (31%), Positives = 104/233 (44%), Gaps = 48/233 (20%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LR 958
VL N SL IE G V L+G SG GKS++ LLL P +G + G+ + + + R
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 959 RLRSQIGLVQQ-----------------EPLLFSCSIRNNICYGNEAASEAEIVEVSKKA 1001
R + LV Q EPL ++ +E+ +A I E+
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL-------RHLTSLDESEQKARIAELLDMV 137
Query: 1002 NIHDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ + LP QLSGGQ QRI IAR L +P +++LDEA S LD +
Sbjct: 138 GLRSEDADKLPR-----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
VI+ L L + A T + + H L V + + VMDKG++VE
Sbjct: 187 AVILELLRKL--------QQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-19
Identities = 63/205 (30%), Positives = 89/205 (43%), Gaps = 46/205 (22%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-- 331
+LK SL++ AG+ VAL G SG GKST++ + Y P +G IL+ +DL
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEG-AWVDLAQASP 81
Query: 332 -------RKNIGAVSQ---------------EPSLFTGSLMDNIKVGNMDADDEQIYNAS 369
RK IG VSQ EP L G E +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGV------------PREAARARA 129
Query: 370 MMANAHSFISQ-LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
A I + L SGG++QR+ IAR + + PILLLDE T++LD+
Sbjct: 130 RELLARLNIPERLWHLPPA-------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
Query: 429 ESEKLVQEALERAM-QGRTVILIAH 452
+ ++V E + A +G +I I H
Sbjct: 183 ANRQVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 2e-19
Identities = 68/233 (29%), Positives = 107/233 (45%), Gaps = 49/233 (21%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS------------- 320
+L G + S+ AG+ VAL+G SG GKST++ ++ G I ++
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 321 LNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNM--------DADDEQIYNASMM 371
+ + L+ +R IG V Q +LF +++DN+ + +A+ + M+
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
A +P QLSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 135 GLADK-ADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE-- 180
Query: 432 KLVQEAL--------ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
LV E L E + T++L+ H M AD + + G++ E G
Sbjct: 181 -LVGEVLNVIRRLASEHDL---TMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 33/232 (14%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID------SLNIKDLDLKSLR 332
+L P G+ + L+G SG GKS+++ ++ P +G + I S D ++ LR
Sbjct: 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81
Query: 333 KNIGAVSQEPSLFTG-SLMDN-----IKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
+N+G V Q+ +L+ ++ N +V + +A A + +L
Sbjct: 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS-------KDQALARAEKLLERL---RL 131
Query: 387 TELGQR-GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAMQG 444
R + LSGGQ+QR+AIARA++ P +LL DE T+ALD E + ++V E A G
Sbjct: 132 KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191
Query: 445 RTVILIAHRMSTIVNADMIA--VV--EDGQVTETGTHHSLL--QTSDFYNRL 490
T +++ H + A A VV E+G + E G QT F N L
Sbjct: 192 ITQVIVTHEVEV---ARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 76/224 (33%), Positives = 104/224 (46%), Gaps = 32/224 (14%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN---EGIILIDGKGI--KEYN 956
L L AL+GPSG GKS+ L L R D P G + + G+ I +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEAEIVEVSKKANIHDFISSL 1010
+ +LR Q+G+V Q+P F SI N+ YG + A E VE S K +++
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ------AAI 134
Query: 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070
D + E LSGGQ+QR+ IAR L +P ++LLDE TSALD S I + L
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL-- 192
Query: 1071 NPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVE 1112
EL + T I V H + A+ I SD G ++E
Sbjct: 193 --------ELRDQYTIILVTHSMHQASRI-SDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 2e-19
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 44/248 (17%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ R T+L++ SL + PG VA++GP+GAGKS++L L P+ G +
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 946 LIDGKGIKEYNLRRLRSQIG-LVQQEPLLFSCSIRNNI------CYGNEAASEAEIVEVS 998
++G+ + +++ L + L Q L F ++ + + A +A +
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 999 KKANIHDFIS-SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL------KRPAIMLLDEA 1051
+ ++ P QLSGG++QR+ +AR L P +LLDE
Sbjct: 120 AQVDLAHLAGRDYP------------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEP 167
Query: 1052 TSALD-AESERVIVSALEALNPKSSSCGELASR--TTQITVAHRLA-TVINSDVIVVMDK 1107
TSALD A V L +LA I V H L +D IV++ +
Sbjct: 168 TSALDLAHQHHV----LRLA-------RQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216
Query: 1108 GEVVEMGS 1115
G +V G+
Sbjct: 217 GRLVADGT 224
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-19
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---- 941
I+ N+ F Y ++ +L S++I A++GPSG GKS+ L L R +
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 942 -EGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVS 998
EG + + I E NL RLR Q+ +V +P LF S+ +N+ YG +IV
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG------VKIVGWR 118
Query: 999 KKANIHDFISS------LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
K I D + S L D + + LSGGQ+QR+ IAR L +P ++L+DE
Sbjct: 119 PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096
LD + + S +++L L S T + V+H L V
Sbjct: 179 FGLDPIASMKVESLIQSL--------RLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 45/242 (18%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ + VT L++ S +E G L+GP+GAGK++ + ++L P+ G +
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 946 LIDGKGIKEYNLRR---LRSQIGLVQ----QEPLLFSCSIRN-NICYGNEAASEA----E 993
L DGK + R L + GL + L++ ++ EA E
Sbjct: 58 LFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK---EEARRRIDEWLE 114
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
+E+S+ AN ++ +LS G +Q++ ++ P +++LDE S
Sbjct: 115 RLELSEYAN-----------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
LD + ++ + L + T I H++ V D +++++KG V
Sbjct: 158 GLDPVNVELLKDVIREL---------ARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208
Query: 1113 MG 1114
G
Sbjct: 209 YG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 54/241 (22%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ +N+ Y +++ SL + G L+G +GAGK++ L +L P G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ-----------EPLLFSCSIRNNICYGNEAASEAEI 994
I+G I+ + + R +G Q E L F ++ ++ + E+
Sbjct: 60 YINGYSIR-TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG----LPKSEIKEEV 114
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+ + + D + LSGG K+++++A L+ P+++LLDE TS
Sbjct: 115 ELLLRVLGLTDKA-------NKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
LD S R I + + + L + + + A L D I +M G++ +G
Sbjct: 164 LDPASRRAIWDLILEV--RKGRSIILTTHS--MDEAEALC-----DRIAIMSDGKLRCIG 214
Query: 1115 S 1115
S
Sbjct: 215 S 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 38/206 (18%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN---EGIILID-----GKGIKEY 955
+ +L IEP A +GPSG GKS+VL L R ++ P EG +L+D G G+
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 956 NLRRLRSQIGLVQQEPLLF-SCSIRNNICYG-----NEAASEA-EIVEVS-KKANIHDFI 1007
+RR IG+V Q P F + SIR+N+ G + E+VE S + AN+ + +
Sbjct: 82 AVRR---TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV 138
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
D + G LSGGQ+QR+ IAR + P ++L+DE SALD S A+
Sbjct: 139 KDRLD-------KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIS----TLAI 187
Query: 1068 EALNPKSSSCGELASRTTQITVAHRL 1093
E L EL T + V H +
Sbjct: 188 EDL------INELKQDYTIVIVTHNM 207
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 38/225 (16%)
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID--- 319
+ LK S +P G+ + L+G +G GKST++ L+A Y P +G + +
Sbjct: 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV 85
Query: 320 -SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN--MDADDEQIYNASMMANAHS 376
SL L L P L TG +NI + + ++I +
Sbjct: 86 SSL----LGL--------GGGFNPEL-TG--RENIYLNGRLLGLSRKEI--DEKIDEIIE 128
Query: 377 FISQLPDQYSTELGQRGVQ----LSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SE 431
F +ELG S G K R+A A A P ILL+DE + D+ E
Sbjct: 129 F---------SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179
Query: 432 KLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
K + E QG+TVIL++H S+I D V+E G++ G
Sbjct: 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 4e-19
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 45/232 (19%)
Query: 904 LNNFSLQIE---PGLKV-ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK----GIKEY 955
L +FSL + PG V A+ G SG+GK++++ L+ P+EG I+++G+ K
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 956 NLRRLRSQIGLVQQEPLLFS-CSIRNNICYG-------NEAASEAEIVEVSKKANIHDFI 1007
L + +IG V QE LF S+R N+ YG S ++E+ I +
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIEL---LGIGHLL 125
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
LP +LSGG+KQR+AI R LL P ++L+DE +ALD + I+ L
Sbjct: 126 GRLPG-----------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174
Query: 1068 EALNPKSSSCGELASRTTQIT---VAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
E L I V+H L V+ +D +VV++ G V G
Sbjct: 175 ERL-----------HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 4e-19
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 36/230 (15%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+LK S + G+++A+ GS+G GKS+++ ++ +PS G I K
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI----------------K 484
Query: 334 NIGAVS---QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA-NAHSFISQLPDQYSTEL 389
+ G +S Q + G++ DNI G + DE Y + + A I+ P++ T L
Sbjct: 485 HSGRISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDIALFPEKDKTVL 542
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQGRTVI 448
G+ G+ LSGGQ+ RI++ARA+ K+ + LLD + LD +EK + E+ L + M +T I
Sbjct: 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602
Query: 449 LIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498
L+ ++ + AD I ++ +G FY +Q RP
Sbjct: 603 LVTSKLEHLKKADKILLLHEG-------------VCYFYGTFSELQAKRP 639
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 4e-19
Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 26/235 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ ++ + V ++ SL I G AL+G SG GKS++L +L F P G I
Sbjct: 20 LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAEIVEVSKKAN 1002
++DG + ++ + I ++ Q LF ++ NI +G + +AEI +
Sbjct: 77 MLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI-----ASR 129
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE-SER 1061
+++ + + K QLSGGQ+QR+A+AR+L KRP ++LLDE ALD + +R
Sbjct: 130 VNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDR 187
Query: 1062 VIVSALEALNPKSSSCGELA-SRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
+ + ++ L +C + + +T+A R+A +M++G+ V++G
Sbjct: 188 MQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIA---------IMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 4e-19
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 46/218 (21%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS--LNIKDLDLK 329
Q + SL++P + L+G +G GKST++ ++ P++G+I+ D KDL
Sbjct: 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDL--- 69
Query: 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388
IG++ + P L+ + +N+KV H+ + LPD E
Sbjct: 70 ---HKIGSLIESPPLYENLTARENLKV-------------------HTTLLGLPDSRIDE 107
Query: 389 L---------GQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLV 434
+ G++ Q S G KQR+ IA A++ +P +L+LDE T+ LD E +L+
Sbjct: 108 VLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167
Query: 435 QEALERAMQGRTVILIAHRMSTI-VNADMIAVVEDGQV 471
+ E QG TVIL +H +S + AD I ++ +G +
Sbjct: 168 RSFPE---QGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-19
Identities = 68/234 (29%), Positives = 119/234 (50%), Gaps = 31/234 (13%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+ ++ V +Y ++KG L + G+ + LVG SGCGKST++ +VA ++G+
Sbjct: 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDAD--DEQIYNA 368
I I + +L+ ++I V Q +L+ S+ +N+ K+ M +E++ A
Sbjct: 61 IWIGGRVVNELEPAD--RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ + + L L ++ +LSGGQ+QR+A+ RAIV+ P + L DE S LD+
Sbjct: 119 ARILE----LEPL-------LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
Query: 429 ESEKL-VQEALE-RAMQGR---TVILIAH-RMSTIVNADMIAVVEDGQVTETGT 476
KL VQ LE + + R T + + H ++ + AD + V+ G + GT
Sbjct: 168 ---KLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 4e-19
Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 28/238 (11%)
Query: 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318
+R+V F P R +L SL+ PAGK+ L+G +G GKST++ ++ R PS G+IL+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 319 DSLNIKDLDLKSLRKNIGAVSQE-PSLFTGSLMDNIKVGNMD----------ADDEQIYN 367
D+ ++ K+ + + + Q+ P+ ++ + + +G AD E++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A + +L D LSGG++QR IA + ++ LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 428 SESEKLVQEALERAMQGR--TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+ V + R Q R TVI + H ++ D + + G++ GT L++
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
|
Length = 265 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 5e-19
Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN---EGIILIDGKGI--KEYN 956
+ N L I A +GPSG GKS++L R D P EG + GK + + +
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPD 1012
+R +IG+V Q+P F SI +NI YG E+VE S + ++L D
Sbjct: 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQ------AALWD 139
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
+ + G LSGGQ+QR+ IAR + +P ++L+DE SALD S I +
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH---- 195
Query: 1073 KSSSCGELASRTTQITVAHRL 1093
EL + T I V H +
Sbjct: 196 ------ELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 5e-19
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ I+F+Y +P +F L G A+VGPSG+GKS++L L+ F P G +
Sbjct: 1 VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG-------NEAASEAEIVEV 997
LI+G + + ++ QE LF+ ++ N+ G +A I
Sbjct: 56 LING--VDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQA-IEVA 112
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+ + LP +LSGG++QR+A+AR L++ ++LLDE +ALD
Sbjct: 113 LARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (219), Expect = 5e-19
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 16/217 (7%)
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-----DILIDSLNIKDLDLKSLRKN 334
L + G AL+G +G GKST++ + P+ G DI++ S + K ++K +RK
Sbjct: 27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS-KQKEIKPVRKK 85
Query: 335 IGAVSQEP--SLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
+G V Q P LF +++ ++ G + + + A + + E ++
Sbjct: 86 VGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVG-----LADEFWEK 140
Query: 393 G-VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILI 450
+LSGGQ +R+AIA + P +L+LDE T+ LD ++ + + E Q G+TV+L+
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 451 AHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486
H M + + AD + ++E G + GT + Q DF
Sbjct: 201 THLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
|
Length = 288 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 5e-19
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 39/195 (20%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--------- 325
LKG +L+I G+ ++L+G SGCGKST+++L++ P++G ++++ I +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 326 -----LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDAD-DEQIYNASMMANAHSFIS 379
L ++R+NI +L ++ ++ A +E I + A
Sbjct: 61 QNYSLLPWLTVRENI-------ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD---- 109
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE 439
+R QLSGG KQR+AIARA+ P +LLLDE ALD+ + +QE L
Sbjct: 110 -----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
Query: 440 RAMQ--GRTVILIAH 452
+ + TV+++ H
Sbjct: 159 QIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-19
Identities = 61/214 (28%), Positives = 110/214 (51%), Gaps = 2/214 (0%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332
L+L+G S I + V +VG +G GKST++ R + G+I ++ I L+ LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
+ + Q+P LF G++ N+ ++A +++ A + ++ + + + +
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVD-PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442
Query: 393 GVQLSGGQKQRIAIARAIVK-NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIA 451
G S GQ+Q + +ARA++K +L+DEAT+ +D ++ +Q + A TVI IA
Sbjct: 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIA 1502
Query: 452 HRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
HR+ T+ D I V++ G V E G+ L+
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQ 1536
|
Length = 1560 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 6e-19
Identities = 74/241 (30%), Positives = 116/241 (48%), Gaps = 27/241 (11%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----- 939
+I+ + + F Y VL N ++ A++GPSG GKS++L L R D
Sbjct: 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 940 PNEGIILIDGKGIKEYNLR--RLRSQIGLVQQEPLLFSCSIRNNICYGNE---AASEAEI 994
EG +L+D + I NL LR ++G+V Q+P F SI +N+ +G +++ +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
EV +K+ + ++L D + + G LSGGQ+QR+ IAR L P ++L+DE SA
Sbjct: 121 DEVVEKS-LRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI-NSDVIVVMDKGEVVEM 1113
LD S I ++ EL T V H + SD + G++VE
Sbjct: 178 LDPVSTMRIEELMQ----------ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227
Query: 1114 G 1114
G
Sbjct: 228 G 228
|
Length = 251 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 6e-19
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 25/241 (10%)
Query: 886 IEFQNIKFNY-PSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I FQ ++ Y P E L + ++ I G VA++G +G+GKS++L L P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 944 IILIDGKGI----KEYNLRRLRSQIGLVQQ--EPLLFSCSIRNNICYG--NEAASEAEIV 995
+ I + I K L+ LR ++G+V Q E LF ++ +IC+G N SE +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+ +++ + LP+ ++ +LSGGQ +R+AIA L P +++LDE T+ L
Sbjct: 123 QKAREMI---ELVGLPE---ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D + + ++ L+ + T + V H + +D IVVM KG V G
Sbjct: 177 DPKGRKEMMEMFYKLHKEKG--------LTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228
Query: 1115 S 1115
+
Sbjct: 229 T 229
|
Length = 290 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 6e-19
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 25/234 (10%)
Query: 257 IDIRDVCFAYPSRPDQ---LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
I ++V + Y S + L L +L + G+ + ++G +G GKST+ + PS
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 314 GDILIDSLNIKDL-DLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQIY-- 366
G + +D L+ D +L +R G V Q P + + +++ G N+ E+I
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 367 --NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ + + P LSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPHL-----------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 425 ALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
LD + V ++ + G T+ILI H M V AD I V++ G+V GT
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 6e-19
Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE NIK R +V LN+ SL I G VAL+GPSG+GK+++L ++ G I
Sbjct: 3 IEIANIK-KSFGRTQV--LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVS 998
G + + R ++G V Q LF ++ +NI +G E + A I +
Sbjct: 60 RFHGTDVSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK--A 115
Query: 999 KKANIHDFI--SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
K + + + + L D Y QLSGGQKQR+A+AR L P I+LLDE ALD
Sbjct: 116 KVTQLLEMVQLAHLADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
A+ + + L L+ EL + T + V H + +D +VVM +G + + G+
Sbjct: 169 AQVRKELRRWLRQLHE------EL--KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 6e-19
Identities = 67/252 (26%), Positives = 121/252 (48%), Gaps = 24/252 (9%)
Query: 255 GNIDIRDVCFAYPSR-PDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312
+I + +V + Y + P + L SL+ K+ ++G++G GKST+I L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 313 NGDILIDSL----NIKDL-DLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDE 363
G ++ N+K + ++K LRK IG V Q P LF ++ +I G N+ + +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 364 QIYNA--SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
+ Y ++ + QLP+ Y + +LSGGQK+R+A+A I + L+LDE
Sbjct: 125 EAYKKVPELLK-----LVQLPEDYVK---RSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
Query: 422 ATSALDSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478
T LD + E+ ER + +I++ H M ++ AD + V+ +G+V G+
Sbjct: 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
Query: 479 SLLQTSDFYNRL 490
+ + ++
Sbjct: 237 EIFSNQELLTKI 248
|
Length = 289 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 8e-19
Identities = 61/184 (33%), Positives = 91/184 (49%), Gaps = 22/184 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---- 941
I+ +++ F Y + + S+ I A++GPSG GKS+ + L R +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 942 -EGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFSCSIRNNICYG------NEAASEA 992
EG++ G+ I + N+ RLR QIG+V Q P F SI N+ YG A
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
EIVE + K ++L + + LSGGQ+QR+ IAR L +P ++L+DE
Sbjct: 125 EIVESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 1053 SALD 1056
SALD
Sbjct: 179 SALD 182
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 9e-19
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 38/229 (16%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
+LN+ SL + G AL+GP+G GKS++L R P G + + K I + R+L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 962 SQIGLVQQEPLL-FSCSIRNNICYGNE---------AASEAEIVEVSKKANIHDFISSLP 1011
++ L+ Q L ++R + YG +A + V + +
Sbjct: 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT--------- 126
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
+ + + LSGGQ+QR +A L + ++LLDE T+ LD + ++ + LN
Sbjct: 127 -RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINS-----DVIVVMDKGEVVEMGS 1115
+ T +TV H L N D +VV+ G V+ G+
Sbjct: 186 TQGK---------TVVTVLHDL----NQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-18
Identities = 68/240 (28%), Positives = 120/240 (50%), Gaps = 39/240 (16%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + I +P V ++ SL ++ G AL+G +GAGKS+++ +L Y P+ G I
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 946 LIDGKGIKEYNLRR-LRSQIGLVQQEPLLF-SCSIRNNICYGNE---------AASEAEI 994
+DGK ++ + R +R IG+V Q +L + ++ NI G E + A I
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
Query: 995 VEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
E+S++ + D PD V + LS G++QR+ I + L + +++LDE T+
Sbjct: 122 KELSERYGLPVD-----PDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTA 169
Query: 1054 AL-DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111
L E++ + L L ++ G T I + H+L V+ +D + V+ +G+VV
Sbjct: 170 VLTPQEADELFE-ILRRL----AAEG-----KTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 82/255 (32%), Positives = 118/255 (46%), Gaps = 50/255 (19%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKS----SVLALLLRFYDPN------EGIILIDGKG 951
TV+N+ SLQIE G +ALVG SG+GKS S+L LL P+ G I G+
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----PSPPVVYPSGDIRFHGES 77
Query: 952 I---KEYNLRRLR-SQIGLVQQEPLLFSCSIRNNI------------CYGNEAASEAEIV 995
+ E LR +R ++I ++ QEP++ S + + + EAA EI+
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMV-SLNPLHTLEKQLYEVLSLHRGMRREAA-RGEIL 135
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+ I L D Y QLSGG++QR+ IA LL RP +++ DE T+AL
Sbjct: 136 NCLDRVGIRQAAKRLTD-YPH-------QLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D + I+ L L EL IT H L+ V +D + VM G VE
Sbjct: 188 DVSVQAQILQLLRELQ------QELNMGLLFIT--HNLSIVRKLADRVAVMQNGRCVEQN 239
Query: 1115 SHSTLVAESQGVYSR 1129
+TL + Y++
Sbjct: 240 RAATLFSAPTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-18
Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 26/179 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ ++ +Y +P L + +L +E G + ++GPSG GK+++L L+ F G I
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
+DGK ++ R G+V Q E LL ++++N+ +G + A V K +
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAG------VEKMQRLE 107
Query: 1005 DFISSLPDGYDTVVGEKGC------QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
L VG +G QLSGGQ+QR+ IAR L P ++LLDE ALDA
Sbjct: 108 IAHQML-----KKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +N+ Y R V+N SL ++ G V L+GP+GAGK++ +++ P+ G I
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 946 LIDGKGIKEYNL-RRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANI 1003
L+DG+ I + + +R R IG + QE +F ++ NI + EI +SKK
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENI------LAVLEIRGLSKKE-R 110
Query: 1004 HDFISSLPD--GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+ + L + + K LSGG+++R+ IAR L P +LLDE + +D
Sbjct: 111 EEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 43/209 (20%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDL--DLK 329
ILKG +L+I G++ AL+G +G GKST+ + Y+ + G+IL +I DL + +
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
+ R I Q P G +K + F+ +
Sbjct: 75 A-RLGIFLAFQYPPEIPG-----VKNAD-------------------FLRYV-------- 101
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVI 448
SGG+K+R I + ++ P + +LDE S LD ++ +LV E + + +G++V+
Sbjct: 102 ---NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 449 LIAH--RMSTIVNADMIAVVEDGQVTETG 475
+I H R+ + D + V+ DG++ ++G
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 1e-18
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 26/171 (15%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR- 332
+L SL IP+G+MVAL+G SG GK+T++ ++A ++G I + D+ R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI---RFHGTDVSRLHARD 73
Query: 333 KNIGAVSQEPSLFTG-SLMDNIKVG----------NMDADDEQIYNASMMANAHSFISQL 381
+ +G V Q +LF ++ DNI G N A ++ M ++ L
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ----LAHL 129
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
D+Y QLSGGQKQR+A+ARA+ P ILLLDE ALD++ K
Sbjct: 130 ADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173
|
Length = 353 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 46/258 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+D+R V F +R ++ I SL++P GK+ A++G SG GK+T++ L+ P +G+I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 317 LIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY-NASMMA 372
L D NI + L ++RK + + Q +LFT D ++ N +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT---------------DMNVFDNVAYPL 109
Query: 373 NAHSFISQLPDQ--YSTEL------GQRGV------QLSGGQKQRIAIARAIVKNPPILL 418
H+ QLP +ST + G RG +LSGG +R A+ARAI P +++
Sbjct: 110 REHT---QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
Query: 419 LDEATSALDSESE----KLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473
DE D + KL+ E L A+ G T ++++H + +++ AD +V D ++
Sbjct: 167 FDEPFVGQDPITMGVLVKLISE-LNSAL-GVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224
Query: 474 TGTHHSLLQTSDFYNRLF 491
G+ +L D R F
Sbjct: 225 HGSAQALQANPDPRVRQF 242
|
Length = 269 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-18
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 38/258 (14%)
Query: 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS 929
E S +F + P+V +L + S+ + G ++G +G+GKS+
Sbjct: 649 ATPTSERSAKTPKMKTDDF------FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKST 701
Query: 930 VLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE-- 987
+L LL ++ +EG + + RS I V Q+ + + ++R NI + +E
Sbjct: 702 LLQSLLSQFEISEGRVWAE------------RS-IAYVPQQAWIMNATVRGNILFFDEED 748
Query: 988 AASEAEIVEVSK-KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046
AA A+ V VS+ +A++ + L G +T +GEKG LSGGQK R+++AR + +
Sbjct: 749 AARLADAVRVSQLEADL----AQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVY 804
Query: 1047 LLDEATSALDAE-SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105
LLD+ SALDA ERV+ G LA + T++ H++ V +D +V +
Sbjct: 805 LLDDPLSALDAHVGERVVEECF---------LGALAGK-TRVLATHQVHVVPRADYVVAL 854
Query: 1106 DKGEVVEMGSHSTLVAES 1123
G V GS + + S
Sbjct: 855 GDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-R 958
+ +L SL + G VAL+G +GAGK+++L ++ P G I DG+ I
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 959 RLRSQIGLVQQEPLLF-SCSIRNNI---CYGNEAASEAEIVEVSKKANIHDFISSLPDGY 1014
R R+ IG V + +F ++ N+ Y A +E +++ L +
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFPRLKERR 126
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
+ G LSGG++Q +AIAR L+ RP ++LLDE + L + I A+ L
Sbjct: 127 KQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR--- 179
Query: 1075 SSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAE 1122
T + V + +D V+++G VV G+ + L+A+
Sbjct: 180 ------DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 65/228 (28%), Positives = 111/228 (48%), Gaps = 25/228 (10%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID------SLNIKDLDLKSLR 332
+L P G+ + L+G SG GKS+++ ++ P +G + I S D ++ LR
Sbjct: 22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81
Query: 333 KNIGAVSQEPSLFTG-SLMDNI-----KVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
+N+G V Q+ +L+ ++ +N+ +V + +Q + + D+Y
Sbjct: 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLS--KDQALARAEKLLKRLRLKPYADRYP 139
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAMQGR 445
+ LSGGQ+QR+AIARA++ P +LL DE T+ALD E + ++V E A G
Sbjct: 140 -------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGI 192
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL--QTSDFYNRL 490
T +++ H + A + +E+G + E G QT F N L
Sbjct: 193 TQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 23/247 (9%)
Query: 886 IEFQNIKFNY-PSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I F N+ + Y P E +++ + + E G A+VG +G+GKS+++ + P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 944 IILIDGKGI----KEYNLRRLRSQIGLVQQ--EPLLFSCSIRNNICYGNEAASEAEIVEV 997
+ +D I K+ +R +R +IG+V Q E LF ++ I +G + + EV
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFK-MNLDEV 121
Query: 998 SKKANIHDFISSLPDGYDTVVGEKG-CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
A H + L G+ V + Q+SGGQ ++IAI L P I++LDE T+ LD
Sbjct: 122 KNYA--HRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+S+R ++ L++L + T I V+H + V +D ++VM +G +V S
Sbjct: 178 PQSKRQVMRLLKSL--------QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229
Query: 1116 HSTLVAE 1122
L +
Sbjct: 230 PKELFKD 236
|
Length = 286 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (213), Expect = 2e-18
Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 40/248 (16%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF---YDPN---EGIILIDGKGIKEYN 956
+L + +++I ++GPSG+GKS++L +L R YD +G +L GK I + +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 957 LRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKAN-----------IH 1004
+LR ++G+V Q+P F SI +NI Y ++ E E+ K ++
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
D ++S QLSGGQ+QR+ IAR L +P ++L+DE TS +D + + I
Sbjct: 145 DRLNS-----------PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAES 1123
+ EL + + V+H V +D + + GE+VE GS + +
Sbjct: 194 KLIT----------ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243
Query: 1124 QGVYSRLY 1131
+ + Y
Sbjct: 244 KNELTEKY 251
|
Length = 257 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 61/189 (32%), Positives = 85/189 (44%), Gaps = 41/189 (21%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL-------IDGKGIKEY 955
VL N SL + G VAL GPSGAGKS++L L Y P+ G IL +D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 956 NLRRLRSQ-IGLVQQ---------------EPLLFSCSIRNNICYGNEAASEAEIVEVSK 999
+ +R + IG V Q EPLL R A + A E+
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE------AARARAR--ELLA 134
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ NI + + LP SGG++QR+ IAR + I+LLDE T++LDA +
Sbjct: 135 RLNIPERLWHLPPA----------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 1060 ERVIVSALE 1068
+V+V +
Sbjct: 185 RQVVVELIA 193
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 28/225 (12%)
Query: 269 RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD- 327
Q +L SLS+ +G+ VAL+G SGCGKST+ L+ PS G++ + L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 328 --LKSLRKNIGAVSQEPSLFTGSLMDNIKVG-----------NMDADDEQIYNASMMANA 374
K+ R++I V Q+ ++ V ++D E++ AS M A
Sbjct: 82 AQRKAFRRDIQMVFQDS---ISAVNPRKTVREIIREPLRHLLSLD-KAERLARASEMLRA 137
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
L D + QLSGGQ QR+ +ARA+ P +L+LDEA S LD + V
Sbjct: 138 ----VDLDDSVLDKRPP---QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGV 190
Query: 435 QEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
L++ Q G + I H + + + V+++GQ+ ET
Sbjct: 191 IRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS--- 330
IL+G SL +P G++ ++G +G GK+T++ + +G I +D +I L
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDI--TKLPPHER 72
Query: 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS--- 386
R I V Q +F ++ +N+ G + A + I + Y
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTG-LAA----------LPRRSRKI--PDEIYELFP 119
Query: 387 ---TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE--RA 441
LG+RG LSGGQ+Q++AIARA+V P +LLLDE T + K + + RA
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 442 MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
G ++L+ + AD V+E G+V +G
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-18
Identities = 57/226 (25%), Positives = 112/226 (49%), Gaps = 28/226 (12%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
S + +L G SL + G+++A++G +G GKST++ ++ P +G++ ++ + +
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 328 LKSLRKNIGAVSQEPSL-FTGSLMDNIKVGNM-------DADDEQIYNASMMANAHSFIS 379
+ L ++ + Q SL F ++ + +++G + +DE+I ++ A S
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--- 126
Query: 380 QLPDQYSTELGQRGVQ-LSGGQKQRIAIAR------AIVKNPPILLLDEATSALD-SESE 431
L R + LSGG++QR+ +AR V + L LDE TSALD +
Sbjct: 127 --------GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 432 KLVQEALERAMQGRTVILIAHRMS-TIVNADMIAVVEDGQVTETGT 476
++ A + A +G V+ + H ++ AD I ++ G+V +G+
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 3e-18
Identities = 68/245 (27%), Positives = 110/245 (44%), Gaps = 36/245 (14%)
Query: 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---- 947
F+ E+ LNN S E ++G SG+GKS+++ G I +
Sbjct: 30 VFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIY 89
Query: 948 --------------DGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNEAASE 991
K IK N + LR ++ +V Q P LF +I +I +G A
Sbjct: 90 IGDKKNNHELITNPYSKKIK--NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGV 147
Query: 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
+ E K A + L D Y + LSGGQK+R+AIA L +P I++ DE
Sbjct: 148 KKS-EAKKLAKFYLNKMGLDDSY---LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEP 203
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
T+ LD + E ++ + L+ K A+ T + H + V+ +D ++VMDKG++
Sbjct: 204 TAGLDPKGEHEMMQLI--LDAK-------ANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254
Query: 1111 VEMGS 1115
++ G+
Sbjct: 255 LKTGT 259
|
Length = 320 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 3e-18
Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 886 IEFQNIKFNY-PSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL----ALLLRFYD 939
I+F+N+ + Y P P E L+N S ++E G VALVG +G+GKS+++ ALL
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---- 58
Query: 940 PNEGIILIDGKGIK----EYNLRRLRSQIGLVQQ--EPLLFSCSIRNNICYG--NEAASE 991
P+ G I I G I NL++LR ++ LV Q E LF ++ ++ +G N SE
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSE 118
Query: 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKG-CQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
E E + K ++ + G + K +LSGGQ +R+AIA + P I+ LDE
Sbjct: 119 DEAKEKALK-----WLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
+ LD E + ++ + + T I V H + V +D ++V++ G+
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQ---------KAGHTVILVTHNMDDVAEYADDVLVLEHGK 222
Query: 1110 VVEMGS 1115
+++ S
Sbjct: 223 LIKHAS 228
|
Length = 287 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 4e-18
Identities = 74/215 (34%), Positives = 108/215 (50%), Gaps = 37/215 (17%)
Query: 918 ALVGPSGAGKSSVLALLLRFYD--PNE---GIILIDG-----KGIKEYNLRRLRSQIGLV 967
A++GPSG GKS+VL + R +D P+ G IL+D +G+ ++RR ++G+V
Sbjct: 34 AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR---RVGMV 90
Query: 968 QQEPLLF-SCSIRNNICYGNE-----AASEA-EIVEVSKKANIHDFISSLPDGYDTVVGE 1020
Q+P F + SI +N+ G + SEA EIVE S K +L D +
Sbjct: 91 FQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR------VALWDEVKDRLKS 144
Query: 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGEL 1080
+LSGGQ+QR+ IART+ +P ++L+DE SALD S I +E EL
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE----------EL 194
Query: 1081 ASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
+ T I V H + SD G++VE G
Sbjct: 195 KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 4e-18
Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 35/249 (14%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN--- 941
E + F Y L N ++ + AL+GPSG GKS+ L R +D P
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 942 EGIILI--DGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEV 997
EG I++ D I E + +R +I +V Q+P F SI N+ YG I V
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYG------LRIRGV 128
Query: 998 SKKANIHDFI------SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
+++ + + + ++L D +G+ LSGGQ+QR+ IAR L P I+L DE
Sbjct: 129 KRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP 188
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110
TSALD + +++E L +L ++ T + V H + SD M GE+
Sbjct: 189 TSALDP----IATASIEEL------ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGEL 238
Query: 1111 VEMGSHSTL 1119
+E G+ T+
Sbjct: 239 IEFGATDTI 247
|
Length = 265 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 5e-18
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%)
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEY 955
P +L N + I G V L+GPSG GKS++L+ ++ G + ++ + +
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD-- 70
Query: 956 NLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGY 1014
L + QIG++ Q+ LLF S+ N+ + A A + +++ + + G
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAANAALERS--GL 124
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
D + LSGGQ+ R+A+ R LL +P +LLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 41/292 (14%)
Query: 193 TGGEVLAAVMSIL------FGAIALTYAAPDMQV--FNQAKAAGFEIFQVIQRKPRISYS 244
V S L + AIA + A +++ F QA A + +
Sbjct: 327 QAVGAFGQVHSSLSWFIDNYDAIA-DWRATLLRLAEFRQALEAA--------QMDTEKPA 377
Query: 245 SKGKELEKIDGN---IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTV 301
G+ ++ D I + ++ P Q +L + + G+ + + G SG GK+++
Sbjct: 378 RTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSL 435
Query: 302 ISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV--GNMD 359
+ +A + +G I + + + + + Q P L G+L + + D
Sbjct: 436 LRALAGLWPWGSGRISMPADS-----------ALLFLPQRPYLPQGTLREALCYPNAAPD 484
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
D ++ +L E + LSGG++QR+A AR ++ P + L
Sbjct: 485 FSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539
Query: 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADM-IAVVEDGQ 470
DEATSALD E+E + + L+ + TVI + HR + + +++D
Sbjct: 540 DEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 6e-18
Identities = 59/207 (28%), Positives = 85/207 (41%), Gaps = 60/207 (28%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ P +L + S +I+PG ++ + GPSG GKSS+ L + G I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
+ + + Q P L ++R + Y
Sbjct: 59 GMPE-----------GEDLLFLPQRPYLPLGTLREQLIY--------------------- 86
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
P +D V LSGG++QR+A AR LL +P + LDEATSALD ESE +
Sbjct: 87 -----P--WDDV-------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHR 1092
L+ L T I+V HR
Sbjct: 133 LLKEL------------GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 7e-18
Identities = 69/252 (27%), Positives = 122/252 (48%), Gaps = 40/252 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+F+N++ Y + V++ S ++ G L+GP+GAGK++ L +LL P+ G I
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ-EPLLFSCSIRNNIC-----YGNEAASEAEIVEVSK 999
+ G+ + R R ++G+V Q + L ++R N+ +G AA+ +V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV---- 119
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ +F + L + D VGE LSGG K+R+ +AR L+ P +++LDE T+ LD ++
Sbjct: 120 -PPLLEF-AKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMDKGEVVEM 1113
++ L +L LA T + H RL D + V+++G +
Sbjct: 174 RHLMWERLRSL---------LARGKTILLTTHFMEEAERLC-----DRLCVIEEGRKIAE 219
Query: 1114 GSHSTLVAESQG 1125
G+ L+ G
Sbjct: 220 GAPHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (209), Expect = 9e-18
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 40/256 (15%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-----ILIDGKGIKEY- 955
TVL+ S+ +L+GP+G+GK++ L L R D G +L+ G+ I Y
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-----------ASEAEIVEVSKKANIH 1004
++ R ++G++ Q P F SI +N+ G A ++A + EV +
Sbjct: 95 DVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
D +S P +LSGGQ+Q + +ARTL P ++LLDE TSALD + I
Sbjct: 155 DRLSDSP-----------FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAES 1123
+ + LA R T I V H LA SD + G +VE G L +
Sbjct: 204 EFIRS----------LADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
Query: 1124 QGVYSRLYQLQAFSGN 1139
+ + Y + SG+
Sbjct: 254 KHAETARY-VAGLSGD 268
|
Length = 276 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 1e-17
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
+ L+N +++I G +VG G GKSS+L +L EG + K E +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 959 ----RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGY 1014
R R + Q+P L + ++ NI +G+ ++ V+ ++ I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA--LEALNP 1072
T +GE+G LSGGQ+QRI +AR L + I+ LD+ SALD ++ L+ L
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1073 KSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108
+ T + V H+L + ++D I+ M G
Sbjct: 191 ---------DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-17
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 31/236 (13%)
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG---KGIKEYNLRRLR-SQ 963
SL IE G ++G SG+GKS+++ LL R +P G +LIDG I + LR +R +
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 964 IGLV-QQEPLLFSCSIRNNICYGNEAAS------EAEIVEVSKKANIHDFISSLPDGYDT 1016
I +V Q L+ ++ +N +G E A + ++ ++ + ++ S PD
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD---- 163
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
+LSGG +QR+ +AR L P I+L+DEA SALD + L L K
Sbjct: 164 -------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK--- 213
Query: 1077 CGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
+ T + ++H L + D I +M GEVV++G+ ++ Y R +
Sbjct: 214 -----HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264
|
Length = 400 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-17
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-----ILIDGKGIKEYNLR-- 958
N +L ++ G AL+GPSG GK++ L + R +D G IL+DG+ I +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 959 RLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA---SEAEIVEVSKKANIHDFISSLPDGY 1014
+R ++G+V Q+P F + S+ +N+ G + A ++EV++++ ++L D
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRG---AALWDEV 138
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
+ LSGGQ+QR+ IAR L P I+L+DE TSALD S I +
Sbjct: 139 KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM------- 191
Query: 1075 SSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
+L TT I V H + SD G++VE G
Sbjct: 192 ---TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229
|
Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 38/180 (21%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--------- 953
VL SLQ G ++++G SG+GKS+ L + P+ G I ++G+ I+
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 954 ----EYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEA------ASEAEIVEVSK--- 999
+ L+RLR+++G+V Q L+S ++ N+ EA S+AE +E ++
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVI---EAPVHVLGVSKAEAIERAEKYL 137
Query: 1000 -KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
K I + + P LSGGQ+QR+AIAR L P +ML DE TSALD E
Sbjct: 138 AKVGIAEKADAYP-----------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186
|
Length = 256 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-17
Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 35/245 (14%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--PN- 941
+IE +++K ++ V VL+ +L+I AL+GPSG+GKS++L + R + P
Sbjct: 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59
Query: 942 --EGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFSCSIRNNICYG--------NEAAS 990
G + +DG+ I + ++ LR ++ +V Q P + + SI N+ G ++
Sbjct: 60 RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ + +KA + D + D D G +LSGGQ+QR+ IAR L +P ++L DE
Sbjct: 120 QERVRWALEKAQLWD---EVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADE 172
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
T+ LD E+ + +E+L EL T + V H SD + + KG+
Sbjct: 173 PTANLDPEN----TAKIESLFL------ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222
Query: 1110 VVEMG 1114
+VE G
Sbjct: 223 IVEWG 227
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 37/246 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---- 941
IE N++ Y S V+ L+I AL+GPSG GKS++L R + N
Sbjct: 5 IETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 942 -EGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG----NEAASEAE 993
EG + + G+ I + + +R ++G+V Q P F +I +N+ G S+ E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 994 IVEVS----KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+ E KKA + D + + Y + LSGGQ+QR+ IAR L +P I+L+D
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPS-------NLSGGQRQRLVIARALAMKPKILLMD 174
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108
E T+ +D I L EL T + V H A SD + + G
Sbjct: 175 EPTANIDPVGTAKIEELLF----------ELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224
Query: 1109 EVVEMG 1114
+++E+G
Sbjct: 225 KLIEVG 230
|
Length = 253 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 54/207 (26%), Positives = 101/207 (48%), Gaps = 9/207 (4%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
L G SL I G V ++GS+G GKST+++ +A P++G ILID +++ +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 334 NIGAVSQEPSLFTGSLM---DNIKVGNMDADDE---QIYNASMMANAHSFISQLPDQYST 387
+ V Q+P T + +N+ + N ++ +++L
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR-- 445
L R LSGGQ+Q +++ A + P ILLLDE T+ALD ++ + V E + ++
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 446 TVILIAHRMSTIVN-ADMIAVVEDGQV 471
T +++ H M ++ + + ++ G++
Sbjct: 201 TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-17
Identities = 78/252 (30%), Positives = 122/252 (48%), Gaps = 37/252 (14%)
Query: 257 IDIRDVCFAY-PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKS----TVISLVARFYDP 311
+ IR++ A+ +KG S I AG+ +ALVG SG GKS +++ L+ P
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----P 61
Query: 312 SN------GDIL---IDSLNIKDLDLKSLRKN-IGAVSQEPSLFTGSLMDNIKVGNMDAD 361
S G IL D L + L+ +R N IG + QEP T SL +G A+
Sbjct: 62 SPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP--MT-SLNPLHTIGKQLAE 118
Query: 362 DEQIYNASMMANAHSFISQLPDQYSTE-----LGQRGVQLSGGQKQRIAIARAIVKNPPI 416
+++ A A + +L + L +LSGGQ+QR+ IA A+ P +
Sbjct: 119 VLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 417 LLLDEATSALDSESE----KLVQEALERAMQGRTVILIAHRMSTIVN--ADMIAVVEDGQ 470
L+ DE T+ALD + L++E L+ + G ++ I H + IV AD + V++ G+
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKE-LQAEL-GMAILFITHDLG-IVRKFADRVYVMQHGE 235
Query: 471 VTETGTHHSLLQ 482
+ ETGT +L
Sbjct: 236 IVETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-17
Identities = 68/276 (24%), Positives = 122/276 (44%), Gaps = 32/276 (11%)
Query: 856 LAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGL 915
L ++ D + D R++G + RP +L N S +PG
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRE--------RPRKHLLKNVSGVAKPGE 52
Query: 916 KVALVGPSGAGKSSVLALLLRFYDPN----EGIILIDGKGIKEYNLRRLRSQIGLVQQEP 971
+A++G SGAGK++++ L F P G +L++G I + + +R+ VQQ+
Sbjct: 53 LLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPI---DAKEMRAISAYVQQDD 108
Query: 972 LLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS--SLPDGYDTVVGEKGCQ--LS 1026
L + ++R ++ + + + K+ + + + L +T +G G LS
Sbjct: 109 LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS 168
Query: 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQ 1086
GG+++R+A A LL P ++ DE TS LD+ +V L+ L K T
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK---------GKTI 219
Query: 1087 ITVAHRLATVI--NSDVIVVMDKGEVVEMGSHSTLV 1120
I H+ ++ + D I++M +G V +GS V
Sbjct: 220 ICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 29/195 (14%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKST---VISLVARFYDPSNGDILIDSLNIKDLDLK 329
IL SL + +G+++A++GSSG GK+T IS ++G IL + +
Sbjct: 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QPRKPD 77
Query: 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH---SFISQLPDQYS 386
+K + V Q+ L+ + V E + +++ I + +
Sbjct: 78 QFQKCVAYVRQD-----DILLPGLTV------RETLTYTAILRLPRKSSDAIRKKRVEDV 126
Query: 387 TEL--------GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
G +SGG+++R++IA ++ +P +L+LDE TS LDS + + L
Sbjct: 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186
Query: 439 ER-AMQGRTVILIAH 452
+ A + R VIL H
Sbjct: 187 SQLARRNRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-17
Identities = 74/259 (28%), Positives = 114/259 (44%), Gaps = 56/259 (21%)
Query: 898 RPEVTV--LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955
+PE V L+ S +E G +A+VG SG GKS++ LL P G + G+ + +
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82
Query: 956 N---LRRLRSQIGLVQQ-----------------EPLLFSCSIRNNICYGNEAASEAEIV 995
+ + LR +I +V Q EPLL N + S AE
Sbjct: 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI-----------NTSLSAAE-- 129
Query: 996 EVSKKANIHDFISSL---PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
++ ++ + P+ YD SGGQ+QRIAIAR L+ P +++ DE
Sbjct: 130 ---RREKALAMMAKVGLRPEHYDRYPH----MFSGGQRQRIAIARALMLDPDVVVADEPV 182
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV--INSDVIVVMDKGEV 1110
SALD V V A + LN EL + + ++H L+ V I +V+ VM G
Sbjct: 183 SALD-----VSVQA-QVLNLMMDLQQEL--GLSYVFISHDLSVVEHIADEVM-VMYLGRC 233
Query: 1111 VEMGSHSTLVAESQGVYSR 1129
VE G+ + + Y++
Sbjct: 234 VEKGTKEQIFNNPRHPYTQ 252
|
Length = 327 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 50/197 (25%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++ ++ A P +++LK S I G + + G SG GKS++ +A + +G I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+++ + Q P L G+L + + IY +
Sbjct: 59 G-----------MPEGEDLLFLPQRPYLPLGTLREQL-----------IYPWDDV----- 91
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
LSGG++QR+A AR ++ P + LDEATSALD ESE + +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 437 ALERAMQGRTVILIAHR 453
L+ G TVI + HR
Sbjct: 133 LLKEL--GITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-17
Identities = 56/202 (27%), Positives = 101/202 (50%), Gaps = 35/202 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++ +V Y +L+LK S I G +A+VG +G GKST++ L+A P +G +
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG--SLMDNIKVGNMDADDEQIYNASMMANA 374
+ IG Q ++++ + G D D++++
Sbjct: 380 KVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEV--------- 419
Query: 375 HSFISQLPDQYSTELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
+++ + ++ E ++ V LSGG+K R+ +A+ +++ P +LLLDE T+ LD ES
Sbjct: 420 RAYLGRFG--FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES--- 474
Query: 434 VQEALERAM---QGRTVILIAH 452
EALE A+ +G TV+L++H
Sbjct: 475 -LEALEEALLDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 6e-17
Identities = 58/230 (25%), Positives = 92/230 (40%), Gaps = 73/230 (31%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E + I + V L+ SL + G AL+G +GAGKS+++ +L Y P+ G I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 946 LIDGKGIKEYNLRR-LRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
L+DGK + + R R+ I +V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLS--------------------------------- 84
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL-DAESERVI 1063
VGE+ Q + IAR L + +++LDE T+AL AE ER+
Sbjct: 85 -------------VGER---------QMVEIARALARNARLLILDEPTAALTPAEVERL- 121
Query: 1064 VSALEALNPKSSSCGELASR-TTQITVAHRLATVIN-SDVIVVMDKGEVV 1111
+ + L ++ I ++HRL V +D + V+ G VV
Sbjct: 122 ---FKVI-------RRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 6e-17
Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 21/234 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + +V ++YP L + +L I G+ + ++G +G GKST+ + P G +
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 317 LIDSLNIKDLD-LKSLRKNIGAVSQEP-SLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
L+ ++ D L+ +RK +G V Q P + F G ++ ++ + +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE----------EDLAFGPENLCLP 109
Query: 375 HSFISQLPDQYSTELGQRGVQ------LSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
I + D+ E+G + LSGGQ Q +A+A + P L+ DE TS LD
Sbjct: 110 PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
Query: 429 ESEKLVQEALERAMQ-GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481
+S V E +++ + G+T++ I H + + +AD I V++ G++ G ++L
Sbjct: 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223
|
Length = 274 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-17
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE-- 954
R E T+ ++ S + G + + GP+GAGK+++L +L P+ G + G+ I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 955 ----YNLRRLRSQIGLVQQ----EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
L L Q G+ + E L F + + + A I E + +
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRF-------HGSGNAATIWEALAQVGLAGL 123
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
D VG QLS GQ++R+A+AR L + +LDE +ALD E V+
Sbjct: 124 E-------DLPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG----VAL 168
Query: 1067 LEAL 1070
L AL
Sbjct: 169 LTAL 172
|
Length = 209 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSS---VLALLLRFYDPN---EGIILIDGKGI--KEY 955
L N +L I A++GPSG GKS+ L L+++ PN G + +G I +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMV-PNVKLTGEMNYNGSNILKGKV 86
Query: 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA------EIVEVSKKANIHDFISS 1009
+L LR IG+V Q+ F SI +N+ YG EIVE S K +
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD------VA 140
Query: 1010 LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069
L D + + LSGGQ+QR+ IAR L P ++L+DE TSALD S R I +
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 1070 LNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122
L K + + T + A R+ SD GE+VE + + +
Sbjct: 201 LKEKYT----IVIVTHNMQQAARV-----SDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 34/241 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N+ +Y ++ VL++ SL I G +++GP+GAGKS++L+++ R + G I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIH 1004
IDG + + L ++ +++QE + S ++R+ + +G S+ + + ++ I+
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRR-IIN 117
Query: 1005 DFI-----SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ I L D Y +LSGGQ+QR IA L + +LLDE + LD +
Sbjct: 118 EAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-----SDVIVVMDKGEVVEMG 1114
I+ L L EL +T + V H IN SD IV + G+VV+ G
Sbjct: 171 SVQIMKILRRL------ADEL-GKTI-VVVLHD----INFASCYSDHIVALKNGKVVKQG 218
Query: 1115 S 1115
S
Sbjct: 219 S 219
|
Length = 252 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ ++ Y + VL++ SL ++ G +GP+GAGK++ + ++L P+ G I
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE-----AEIVEVSKK 1000
DGK + +IG I Y N A E A ++ + KK
Sbjct: 58 TFDGKSYQ--KNIEALRRIG----------ALIEAPGFYPNLTARENLRLLARLLGIRKK 105
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
I + + + G +K S G KQR+ IA LL P +++LDE T+ LD +
Sbjct: 106 -RIDEVLDVV--GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG- 161
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITV---AHRLATV-INSDVIVVMDKGEVVEMG 1114
+ L L L+ R ITV +H L+ + +D I +++KG+++E G
Sbjct: 162 ---IKELREL--------ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-16
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L +L I+ G ++L+G SG GKS++L L+ P G ++++GK I E R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMV-- 58
Query: 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC 1023
+ Q LL ++R NI + ++ + ++A + + I+ + G ++
Sbjct: 59 --VFQNYSLLPWLTVRENIALAVDRVL-PDLSKSERRAIVEEHIALV--GLTEAADKRPG 113
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083
QLSGG KQR+AIAR L RP ++LLDE ALDA + + L + E R
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI------WEE--HR 165
Query: 1084 TTQITVAHRL-ATVINSDVIVVMDKGEVVEMG 1114
T + V H + ++ SD +V++ G +G
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 1e-16
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 36/270 (13%)
Query: 884 GRIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
I N+ + Y + E LNN SL + ++G +G+GKS+++ L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 942 EGIILIDG-------KGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAAS 990
G ++ K IKE ++RLR +IGLV Q P LF +I +I +G N +
Sbjct: 65 TGQTIVGDYAIPANLKKIKE--VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ E + K + + LP+ Y V +LSGGQK+R+A+A + ++LDE
Sbjct: 123 KQEAYK--KVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109
T LD + E ++ E LN E R I V H + V+ +D ++VM +G+
Sbjct: 177 PTGGLDPKGEEDFINLFERLNK------EYKKRI--IMVTHNMDQVLRIADEVIVMHEGK 228
Query: 1110 VVEMG------SHSTLVAESQGVYSRLYQL 1133
V+ +G S+ L+ + + +LYQL
Sbjct: 229 VISIGSPFEIFSNQELLTKIEIDPPKLYQL 258
|
Length = 289 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 36/231 (15%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN- 956
TVLNN SL ++ G VAL+G SG GKS++ LL+ P++G + G+ + + N
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 957 --LRRLRSQIGLVQQEPLLFSCSIRNNICYG-----------NEAASEAEIVEVSKKANI 1003
+ R I +V Q+ + + + R + ++A A E+ + ++
Sbjct: 82 AQRKAFRRDIQMVFQDSI-SAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 1004 HDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
D + P QLSGGQ QR+ +AR L P +++LDEA S LD +
Sbjct: 141 DDSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAG 189
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
++ L+ L + T + + H L V ++VMD G++VE
Sbjct: 190 VIRLLKKLQQQFG--------TACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 34/231 (14%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
S +++ + PG L+GP+G+GKS++L LL P+ G + + G + +
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 957 LRRLRSQIGLVQQE-----PLLFSCSIRNNICYGNE------AASEAEIVEVSKKANIHD 1005
R ++ LV+Q+ PL ++R+ + G A V +A
Sbjct: 70 RRARARRVALVEQDSDTAVPL----TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART 125
Query: 1006 FISSLPD-GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
+S L D T LSGG++QR+ +AR L + P ++LLDE T+ LD ++ +
Sbjct: 126 ELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
+ + L A+ T + H L + D +VV+D G VV G
Sbjct: 178 ALVREL---------AATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 24/222 (10%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
S +LI+ G ++ P G + L+G +G GKST++ L+A P G + + +++ L
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 328 LKSLRKNIGAVSQE-PSLFTGSLMDNIKVGNM----------DADDEQIYNASMMANAHS 376
++ + + V Q+ + ++ D + +G + D + A
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
+ ST LSGG++QR+ +ARA+ + P +LLLDE T+ LD ++
Sbjct: 130 LADR---DMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLA 178
Query: 437 AL-ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+ E A G TV+ H ++ + D + V++ G+V G
Sbjct: 179 LVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS---VLALLLRFYDPNEGIILIDGKGIKE 954
R + + S + G + L GP+G+GK++ ++A LL P G I +DG I +
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDD 68
Query: 955 YNLRRLRSQIG--------LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
++ +G L E L F + AA E V ++ A+
Sbjct: 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAA--LEAVGLAPLAH---- 122
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
LP GY LS GQK+R+A+AR L+ I +LDE T+ALDA + +
Sbjct: 123 ---LPFGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL 169
Query: 1067 LEA 1069
+ A
Sbjct: 170 IRA 172
|
Length = 207 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 62/220 (28%), Positives = 115/220 (52%), Gaps = 23/220 (10%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
+K S ++ G+ +A++G +G GKST+ ++A +P++G+ILI+ + D K
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 335 IGAVSQEPS------LFTGSLMDN--IKVGNMDADD--EQIYNASMMANAHSFISQLPDQ 384
I + Q+P+ L G ++D +++ + +QI+ M + LPD
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRM------VGLLPDH 142
Query: 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKLVQEALE-RAM 442
+ L+ GQKQR+A+ARA++ P I++ DEA ++LD S +L+ LE +
Sbjct: 143 ANYYPHM----LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK 198
Query: 443 QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
QG + I + + I + +D + V+ +G+V E G+ +L
Sbjct: 199 QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-16
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 30/198 (15%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI---KDLDLKSL 331
L+G + + G+M L G SG GKST++ L+ PS G I +I K+ ++ L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKV-----GNMDADDEQIYNAS-----MMANAHSFISQ 380
R+ IG + Q+ L ++ DN+ + G D + +A+ ++ A +F
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF--- 134
Query: 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALE 439
+QLSGG++QR+ IARA+V P +LL DE T LD SE +++ E
Sbjct: 135 ------------PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182
Query: 440 RAMQGRTVILIAHRMSTI 457
G TV++ H + I
Sbjct: 183 FNRVGVTVLMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-16
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 20/232 (8%)
Query: 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+E ++I+ +YPS E V VL SL I G VA+VG SG+GKS+++ +L P G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 945 ILIDGKGIKEYN---LRRLRSQ-IGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSK 999
+ G+ + + L +LR + G + Q+ LL + N+ A A + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQR 121
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ + L G + V + QLSGGQ+QR++IAR L+ ++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
+++ L L + T I V H ++ ++ + GE+V
Sbjct: 180 GEEVMAILHQLRDRGH---------TVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 53/249 (21%)
Query: 878 ESGRIKGR--IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL 935
G+ G+ +EF+N+ Y +L + S +I+ G ++A+VGP+GAGKS++L LL
Sbjct: 312 PPGKRLGKLVLEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 936 RFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995
P G + + G+ +K + R ++ + ++ + G E E+
Sbjct: 370 GELGPLSGTVKV-GETVKIGYFDQHRDELDPDK--------TVLEELSEGFPDGDEQEVR 420
Query: 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQ----LSGGQKQRIAIARTLLKRPAIMLLDEA 1051
+ GE + LSGG+K R+ +A+ LL+ P ++LLDE
Sbjct: 421 AYLGRFGFT--------------GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVM 1105
T+ LD ES + AL T + V+H R+AT + +V
Sbjct: 467 TNHLDIESLEALEEALLDFEG------------TVLLVSHDRYFLDRVAT----RIWLVE 510
Query: 1106 DKGEVVEMG 1114
DK E E G
Sbjct: 511 DKVEEFEGG 519
|
Length = 530 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 64/223 (28%), Positives = 102/223 (45%), Gaps = 25/223 (11%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNL-RR 959
+L +L ++ G A++GP+G+GKS++ ++ Y+ EG IL DG+ I E + R
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 960 LRSQIGLVQQEPLLFSCSIRN--------NICYGNEAASEAEIVEVSKKANIHDFISSLP 1011
R+ I L Q P+ + N N G I E+ +KA +
Sbjct: 79 ARAGIFLAFQYPVEIP-GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL 137
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
+ Y V E SGG+K+R I + LL P + +LDE S LD ++ +++ + AL
Sbjct: 138 ERY---VNEG---FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL- 190
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
+ G L IT RL I D + V+ G +V+ G
Sbjct: 191 -REEGRGVL-----IITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-16
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 41/229 (17%)
Query: 276 KGFSLSIPAGKMVALVGSSGCGKST----VISLVARFYDPSNGDILI---DSLNIKDLDL 328
G +L + G+ + +VG SGCGKST +I LV ++G++ D L +KD +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV----KATDGEVAWLGKDLLGMKDDEW 93
Query: 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNA------------SMMANAHS 376
+++R +I + Q+P SL + +G + A+ + Y+ +MM
Sbjct: 94 RAVRSDIQMIFQDP---LASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV-G 149
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEK 432
+ L ++Y E SGGQ QRI IARA++ P +++ DE SALD ++
Sbjct: 150 LLPNLINRYPHEF-------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVN 202
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480
L+Q+ L+R M G ++I IAH ++ + + +D + V+ G E GT+ +
Sbjct: 203 LLQQ-LQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
++G S + G++ L+G +G GK+T I ++ P++G + ++ + + +R+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGV 394
IG V Q+ S+ D+ G E +Y + A + + EL V
Sbjct: 75 IGIVFQDLSV------DDELTGW-----ENLY---IHARLYGVPGAERRERIDEL-LDFV 119
Query: 395 QL-----------SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--A 441
L SGG ++R+ IAR++V P +L LDE T LD ++ V E +E+
Sbjct: 120 GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE 179
Query: 442 MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
G T++L H M D +A+++ G++ GT
Sbjct: 180 EFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 56/231 (24%), Positives = 96/231 (41%), Gaps = 34/231 (14%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
++ + + LK S I G+ V ++G +G GKST++ L+A Y P++G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 316 ILIDSLNIKDLDLKSLRKNIG-AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+ + + L I +P L TG +NI ++
Sbjct: 84 VKVTG------KVAPL---IELGAGFDPEL-TG--RENIY-----------LRGLILGLT 120
Query: 375 HSFISQLPD---QYSTELGQRGVQ----LSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
I + D +++ ELG Q S G R+A + A P ILLLDE + D
Sbjct: 121 RKEIDEKVDEIIEFA-ELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179
Query: 428 SE-SEKLVQEALERAMQGRTVILIAHRMSTIVNA-DMIAVVEDGQVTETGT 476
+ EK ++ E + +T++L++H + I D +E GQ+ G+
Sbjct: 180 AAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 16/188 (8%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
R + + G S ++ AG+ + + G +G GK+T++ ++A P G +L++ + D
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL-DFQ 67
Query: 328 LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
S+ + + + P + T S+++N++ + D DEQ+ A L
Sbjct: 68 RDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEA------------LARVGL 115
Query: 387 TELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL-ERAMQG 444
R V QLS GQ++R+A+AR ++ P+ +LDE T+ALD EA+ +G
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 445 RTVILIAH 452
V+L H
Sbjct: 176 GMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 22/229 (9%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-- 957
++ L SL++E G VAL+G +GAGK+++L ++ P G I+ DG+ I L
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT--GLPP 72
Query: 958 -RRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSL-PDGY 1014
R R I V + +F ++ N+ G A + E + + + L P
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE-----AQERDLEEVYELFPRLK 127
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
+ ++ LSGG++Q +AIAR L+ RP ++LLDE + L + I A++ L +
Sbjct: 128 E-RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG 186
Query: 1075 SSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAE 1122
T + V + +D V++ G +V G+ + L+A+
Sbjct: 187 G--------MTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227
|
Length = 237 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 3e-16
Identities = 66/226 (29%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL----------IDGKGIKEYNLRRL 960
I +GPSG GKS+VL L R D +G + GKG+ +RR
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRR- 89
Query: 961 RSQIGLVQQEPLLFSCSIRNNICYG----NEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016
IG+V Q+P FS SI +N+ +G + V+ + + ++L D
Sbjct: 90 --YIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQG------AALWDEVKD 141
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
+ G LSGGQ+QR+ IAR + P ++LLDE SALD + R + + L +
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYT- 200
Query: 1077 CGELASRTTQITVAHRLATV---INSDVIVVMDKGEVVEMGSHSTL 1119
+A T + A R+A + D+ G +VEMG + +
Sbjct: 201 ---IALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243
|
Length = 261 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 4e-16
Identities = 63/225 (28%), Positives = 104/225 (46%), Gaps = 22/225 (9%)
Query: 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI-- 318
D+ F Y P +LKG +L + LVG++GCGKST+ ++ P G +L
Sbjct: 6 DLWFRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
L+ L +LR+ + V Q+P ++ D D + ++ + + I
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEI 113
Query: 379 SQLPDQYSTELGQRGVQ------LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
++ D+ T + + + LS GQK+R+AIA A+V LLLDE T+ LD
Sbjct: 114 TRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173
Query: 433 LVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+ + R QG VI+ +H + I +D + V+ GQ+ G
Sbjct: 174 QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 4e-16
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 26/235 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
ID+ V +Y D+ ++ G S ++ +G+ L+G +G GKST+ ++ P G I
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL---FTGSLMDNIKVGN----MDADDEQIYNAS 369
+ + + + R IG V Q +L FT + +N+ V M + + S
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFT--VRENLLVFGRYFGMSTREIEAVIPS 155
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
++ A +L + R LSGG K+R+ +ARA++ +P +L+LDE T+ LD
Sbjct: 156 LLEFA-----RLESKADA----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 206
Query: 430 SEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
+ L+ E L R++ +G+T++L H M D + V+E G+ G H+L+
Sbjct: 207 ARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-16
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 26/169 (15%)
Query: 270 PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDL 326
P +L + +I G++V L+G SGCGKST++S + G++ ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNE---QRL 69
Query: 327 D-LKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NM------DADDEQIYNASMMANAHSFI 378
D L + ++ IG + Q+ LF ++ VG N+ NA+ A S +
Sbjct: 70 DMLPAAQRQIGILFQDALLF-----PHLSVGQNLLFALPATLKGNARRNAANAALERSGL 124
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
Q LSGGQ+ R+A+ RA++ P LLLDE S LD
Sbjct: 125 DGAFHQDPA-------TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 63/175 (36%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
TVLN L I G VA+VG SG GKS++L LL P+ G +L G L R
Sbjct: 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA-GTA----PLAEAR 80
Query: 962 SQIGLVQQEP-LLFSCSIRNNICYG-----NEAASEA-EIVEVSKKANIHDFISSLPDGY 1014
L+ Q+ LL + +N+ G +AA +A V ++ +AN
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN------------ 128
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA----ESERVIVS 1065
E LSGGQKQR+A+AR L+ RP ++LLDE ALDA E + +I S
Sbjct: 129 -----EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178
|
Length = 257 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 6e-16
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 30/237 (12%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN----EGIILIDGKGIKEYNLRRLR 961
+ +L ++ G +ALVG SG+GKS +L P G IL+DG+ +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR---PLLPLSIR 60
Query: 962 S-QIGLVQQEPL-----LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFI--SSLPDG 1013
I + Q P LF+ + N+ E + +A I + + LPD
Sbjct: 61 GRHIATIMQNPRTAFNPLFT--MGNHA---IETLRSLGKLSKQARALILEALEAVGLPDP 115
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
+ V+ + QLSGG QR+ IA LL P ++ DE T+ LD ++ ++ L L
Sbjct: 116 -EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174
Query: 1074 SSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
T + + H L V +D + VMD G +VE G+ + + +R
Sbjct: 175 FG--------TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 8e-16
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFS-----LSIPAGKMVALVGSSGCGKSTVISLVARFYDP 311
+++R+V FAY GFS L+I G+++ L+G +G GKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 312 SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMM 371
+G+IL+D + + RK AV + LF L+ A+ +
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGP---EGKPANPALV------ 425
Query: 372 ANAHSFISQLPDQYSTEL-GQR--GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
++ +L + EL R ++LS GQK+R+A+ A+ + ILLLDE + D
Sbjct: 426 ---EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
Query: 429 ESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
+ + L +Q G+T+ I+H ++AD + + +GQ++E
Sbjct: 483 HFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 68/220 (30%), Positives = 109/220 (49%), Gaps = 23/220 (10%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
+V + + +L I G V VGPSG GKS++L ++ D G + I K + + +
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND--VPP 72
Query: 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVV 1018
+G+V Q L+ S+ N+ +G + A A+ E++++ N + L ++
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLAG-AKKEEINQRVNQVAEVLQL----AHLL 127
Query: 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE---SERVIVSALEALNPKSS 1075
K LSGGQ+QR+AI RTL+ P++ LLDE S LDA R+ +S L K
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH----KRL 183
Query: 1076 SCGELASRTTQITVAH-RLATVINSDVIVVMDKGEVVEMG 1114
T I V H ++ + +D IVV+D G V ++G
Sbjct: 184 GR-------TMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 37/249 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N+ ++YP L N +L I+ G + ++G +G+GKS++ L P +G +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 946 LIDGKGIKEYN-LRRLRSQIGLVQQEP--LLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
L+ G +++ L+ +R +G+V Q P ++ ++ +G E I E+ K+
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI-EIRKRV- 117
Query: 1003 IHDFISSLPDGYDTVVGEKGCQ---------LSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
D + E G + LSGGQ Q +A+A L P ++ DE TS
Sbjct: 118 ------------DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113
LD +S ++ ++ L+ K T + + H L + ++D I+VMD+G++V
Sbjct: 166 MLDPDSGIAVLERIKKLHEKGK---------TIVYITHNLEELHDADRIIVMDRGKIVLE 216
Query: 1114 GSHSTLVAE 1122
G ++++
Sbjct: 217 GEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-15
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 32/214 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS---NGDILID-----SLNIKDL 326
L SL + AG++V+L G +G GKST++ +++ Y P G+I+ + + NI+D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRD- 78
Query: 327 DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGN-------MDADDEQIYNASMMANAHSFI 378
+ R I + QE +L S+++NI +GN MD Y+A M A +
Sbjct: 79 ---TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMD------YDA-MYLRAQKLL 128
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEA 437
+QL + L GQ+Q + IA+A+ K +L+LDE T++L +SE+ L+
Sbjct: 129 AQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186
Query: 438 LERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470
+ G I I+H+++ + +D I V+ DG+
Sbjct: 187 RDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 38/205 (18%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID--SLNIKDLDLKSL 331
+L S SI G+M+A+VGSSG GKST++ L+ P++GD++ + ++ K+
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 332 RKN--IGAVSQEPSL---FTGSLMDNIK----VGNMDADDEQIYNASMMANAHSFISQLP 382
+N +G + Q L FT ++N+ +G + M+A
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTA--LENVAMPLLIGKKKPAEINSRALEMLA---------- 131
Query: 383 DQYSTELGQRG----VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+ L R +LSGG++QR+AIARA+V NP ++L DE T LD+ + + + L
Sbjct: 132 ---AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
Query: 439 -ERAMQGRTVILI-------AHRMS 455
E T L+ A RMS
Sbjct: 189 GELNRLQGTAFLVVTHDLQLAKRMS 213
|
Length = 233 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ + + T +NN SL + L+GP+GAGKS++L ++ P G I
Sbjct: 1 LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN--ICYGNEAASEAEIVEVSKKANI 1003
+ DG + + L L++ PL + + R N + ++ I EV ++
Sbjct: 58 IFDG---HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL 114
Query: 1004 HDFISSLPDGYDTVVGEKGC-QLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
T G+K Q S G KQR+ IA LL P +++LDE T+ LD
Sbjct: 115 ------------TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 46/235 (19%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI---KEYNLR 958
+L SL++ G ++G +G GK+++L L+ G I +DG+ I +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH--E 71
Query: 959 RLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017
R R+ I V Q +F ++ N+ G A + I D I L +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAALP-------RRSRKIPDEIYELFPVLKEM 124
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD----AESERVIVSALEALNPK 1073
+G +G LSGGQ+Q++AIAR L+ RP ++LLDE T + + RVI
Sbjct: 125 LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVI---------- 174
Query: 1074 SSSCGELASRTTQITV---------AHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
L + + + A LA D VM++G VV G+ L
Sbjct: 175 ----RRLRAE-GGMAILLVEQYLDFARELA-----DRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
ID+ V +Y D++++ S +I G+ L+G +G GKST+ ++ P G I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+ + + R IG V Q DN+ ++ ++ +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQ---------FDNLDPEFTVRENLLVFGRYFGMSTRE 111
Query: 377 FISQLPD-----QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
+ +P + ++ R LSGG K+R+ +ARA++ +P +L+LDE T+ LD +
Sbjct: 112 IEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 432 KLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
L+ E L + +G+T++L H M D + V+E G+ G H+L+
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 2e-15
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 21/227 (9%)
Query: 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324
AY R +++ SL++ +G++V L+G +G GK+T +V G+I+ID +I
Sbjct: 12 AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 325 DLDLKS-LRKNIGAVSQEPSLFTG-SLMDNIKV-----GNMDADDEQIYNASMMANAHSF 377
L L + R+ IG + QE S+F S+ DN+ ++ A+ + +M H
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-- 126
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
I L D +GQ LSGG+++R+ IARA+ NP +LLDE + +D S ++
Sbjct: 127 IEHLRDS----MGQ---SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI 179
Query: 438 LERAM-QGRTVILIAHRM-STIVNADMIAVVEDGQVTETGTHHSLLQ 482
+E G V++ H + T+ + +V G + GT +LQ
Sbjct: 180 IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDG-------KGIKEYNLRRLRSQIGLVQQE 970
A+ G SGAGK+S++ + P +G I+++G KGI L + +IG V Q+
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI---CLPPEKRRIGYVFQD 84
Query: 971 PLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029
LF +R N+ YG + A+ ++ I + P LSGG+
Sbjct: 85 ARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGE 133
Query: 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT- 1088
KQR+AI R LL P ++L+DE ++LD +R ++ LE L +R I
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL-----------AREINIPI 182
Query: 1089 --VAH------RLATVINSDVIVVMDKGEVVEMGS 1115
V+H RLA D +VV+++G+V G
Sbjct: 183 LYVSHSLDEILRLA-----DRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 34/242 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI-KDLDLKSLRK 333
+ G + + G++ +G +G GK+T I ++ P++G + ++ ++ +R+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK--VRR 66
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN--------AHSFISQLPDQY 385
+IG V Q S+ D D N MM A +L + +
Sbjct: 67 SIGIVPQYASV--------------DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF 112
Query: 386 S-TELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM- 442
E R V SGG ++R+ IA +++ P +L LDE T+ LD + + + + RA+
Sbjct: 113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD-YIRALK 171
Query: 443 -QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL--LQTSDF-YNRLFTMQNLR 497
+G T++L H M D IA+++ G++ GT L D +R +Q+L+
Sbjct: 172 EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLK 231
Query: 498 PI 499
Sbjct: 232 VE 233
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (190), Expect = 3e-15
Identities = 63/251 (25%), Positives = 123/251 (49%), Gaps = 32/251 (12%)
Query: 886 IEFQNIKFNY-PSRPEVT-VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I+F+ + + Y P+ P + L + L+++ G AL+G +G+GKS++L L P EG
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 944 II----LIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNE----AASEAE 993
+ ++ K+ ++ +R ++G+V Q P LF ++ ++ +G + +AE
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKG-CQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
+ K + G EK +LSGGQ +R+AIA L P +++LDE T
Sbjct: 122 KIAAEKLEMV---------GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111
+ LD ++ ++ E+++ T + V H + V + +D + +++KG ++
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQ---------TVVLVTHLMDDVADYADYVYLLEKGHII 223
Query: 1112 EMGSHSTLVAE 1122
G+ S + E
Sbjct: 224 SCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 57/223 (25%), Positives = 97/223 (43%), Gaps = 36/223 (16%)
Query: 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968
L + G + L+GP+GAGK+++L +L P +G + + G + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55
Query: 969 QEPLL---FSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV-------- 1017
Q F S+ + + G + ++ + DF ++ D V
Sbjct: 56 QRHEFAWDFPISVAHTVMSG-----RTGHIGWLRRPCVADFA-AVRDALRRVGLTELADR 109
Query: 1018 -VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076
VGE LSGGQ+QR+ +AR L RP+++LLDE + LD ++ ++ L
Sbjct: 110 PVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA----- 160
Query: 1077 CGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ T + H LA + + VV+ G V+ G+ L
Sbjct: 161 ----GAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-15
Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 29/209 (13%)
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPS------NGDILIDSLNIKDLDLKSLRK 333
L++PA + A+ G SG GK+++I+ ++ P NG +L D+ K + L ++
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA--EKGICLPPEKR 76
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNA--SMMANAHSFISQLPDQY-STEL 389
IG V Q+ LF + N++ G M ++ +++ I L D+Y +
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYG-MAKSMVAQFDKIVALLG-----IEPLLDRYPGS-- 128
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVI 448
LSGG+KQR+AI RA++ P +LL+DE ++LD ++ + LER A + I
Sbjct: 129 ------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 449 L-IAHRMSTIVN-ADMIAVVEDGQVTETG 475
L ++H + I+ AD + V+E G+V G
Sbjct: 183 LYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 34/244 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP----S 312
I++R++ Q ++ G SL++ G+++ALVG SG GKS + +
Sbjct: 5 IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEP-SLF------TGSLMDNIKVGNMDADDEQI 365
G +L+D + L+ + I + Q P S F + ADD +
Sbjct: 61 AGRVLLDGKPVAPCALRG--RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118
Query: 366 ---YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422
A + NA + P ++SGG QR+ IA A++ P ++ DE
Sbjct: 119 TAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEP 167
Query: 423 TSALDSESEKLVQEALERAMQGRT--VILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479
T+ LD ++ + + LE +Q R ++L+ H M + AD +AV+ G++ E G +
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
Query: 480 LLQT 483
L
Sbjct: 228 LFNA 231
|
Length = 254 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-15
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 39/246 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I +N+ + S +L+ SL + PG +A++GP+GAGKS++L L P+ G +
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 946 LIDGKGIKEYNLRRLRSQIG-LVQQEPLLFSCSIRNNICYG-------NEAASEAEIVE- 996
++G + + L L Q L F +++ + G E + I
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 997 VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK------RPAIMLLDE 1050
++ Y T LSGG++QR+ +AR L + + LDE
Sbjct: 119 ALAATDLSGLAGRD---YRT--------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167
Query: 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL-ATVINSDVIVVMDKGE 1109
TSALD + + L LA V H L +D IV++ +G
Sbjct: 168 PTSALDIAHQHHTLRLARQL--AREGGAVLA-------VLHDLNLAAQYADRIVLLHQGR 218
Query: 1110 VVEMGS 1115
V+ GS
Sbjct: 219 VIASGS 224
|
Length = 259 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 7e-15
Identities = 69/246 (28%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ + +Y + V+N S + G L+GP+GAGKS++ ++L P+ G I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ-EPLLFSCSIRNNIC----YGNEAASEAEIVEVSKK 1000
+ G + R R++IG+V Q + L ++R N+ Y + E E V S
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS-- 155
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ +F + L D V + LSGG K+R+ +AR L+ P +++LDE T+ LD +
Sbjct: 156 --LLEF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQIT-VAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+I L +L + G+ TT A RL D + V++ G + G L
Sbjct: 209 HLIWERLRSLLAR----GKTILLTTHFMEEAERLC-----DRLCVLEAGRKIAEGRPHAL 259
Query: 1120 VAESQG 1125
+ E G
Sbjct: 260 IDEHIG 265
|
Length = 340 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 7e-15
Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 38/262 (14%)
Query: 257 IDIRDVCFAYPSR-PDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I ++++ + + P +L L S+ I G+ +A++G +G GK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 315 DILIDSLNIKDL------------------------DLKSLRKNIGAVSQ--EPSLFTGS 348
I + K+ +K +R+ +G V Q E LF +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 349 LMDNIKVG--NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406
+ +I G +M E+ A A + + L + Y L + +LSGGQK+R+A+
Sbjct: 123 IEKDIIFGPVSMGVSKEE---AKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVAL 176
Query: 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERA-MQGRTVILIAHRMSTIVN-ADMIA 464
A + P L+ DE T+ LD + K + E + QG+T+IL+ H + ++
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 465 VVEDGQVTETGTHHSLLQTSDF 486
+DG++ + G + +L + F
Sbjct: 237 FFKDGKIIKDGDTYDILSDNKF 258
|
Length = 305 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-15
Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
+ TVL+ L + G V LVGP+GAGK+++L + P G +L+ G ++ +
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 957 LRRLRSQIGLVQQE-PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD 1015
R ++ V Q+ L F +R ++VE+ + + F +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVR-------------QVVEMGRTPHRSRFDTWTETD-R 117
Query: 1016 TVVGEKGCQ-------------LSGGQKQRIAIARTLLKRPAIMLLDEATSALD------ 1056
V + LSGG++QR+ +AR L + ++LLDE T++LD
Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVR 177
Query: 1057 --------AESERVIVSALEALNPKSSSCGELASRTT-QITVAHRLATVINSDVI 1102
+ + V+A+ L+ + C EL ++ A A V+ +D +
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTL 232
|
Length = 402 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 8e-15
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 29/216 (13%)
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967
+ ++ G +GP+GAGK++ + +L P G + G + R++R IG+V
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIV 71
Query: 968 QQEPLLF-SCSIRNNI-----CYG-NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGE 1020
Q + + R N+ YG + +E E+ + L + D VG
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF-------ELGEAADRPVG- 123
Query: 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGEL 1080
SGG ++R+ IA +L+ +P ++ LDE T+ LD + R I + AL G
Sbjct: 124 ---TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK----EEGVT 176
Query: 1081 ASRTTQ-ITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
TT + A +L D I ++D G ++ G+
Sbjct: 177 ILLTTHYMEEADKLC-----DRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-15
Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 30/220 (13%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-- 331
++K S ++ G+ + LVG SG GKST + R S G+I D + +L+ + L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 332 -RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
R I V Q+P+ SL + V + + +++ ++ A Q E+G
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQRE---QQVIAVMEEVG 413
Query: 391 ------QR-GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE---ALER 440
R + SGGQ+QRIAIARA++ P +++LDE TS+LD K VQ AL +
Sbjct: 414 LDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLK 469
Query: 441 AMQGR---TVILIAHRMSTIVNA--DMIAVVEDGQVTETG 475
++Q + + I+H + +V A + V+ G+V E G
Sbjct: 470 SLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 9e-15
Identities = 76/280 (27%), Positives = 132/280 (47%), Gaps = 44/280 (15%)
Query: 236 QRKPRISYSSKGKELEKIDGN--------IDIRDVCFAYPSRPDQL--------ILKGFS 279
+R P IS K+ I+ + + +R++ +P R L ++ S
Sbjct: 285 RRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVS 344
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKSLRKNIG 336
+ G+ ++LVG SG GKST + R + G+I+ + I L L++LR++I
Sbjct: 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ 404
Query: 337 AVSQEP--SL-----FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD---QYS 386
+ Q+P SL S+M+ ++V + A+ +A + LP+ +Y
Sbjct: 405 FIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA---AARVAWLLERVGLLPEHAWRYP 461
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKLVQEA--LERAMQ 443
E SGGQ+QRI IARA+ NP +++ DEA SALD S +++ L+R
Sbjct: 462 HEF-------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDF- 513
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
G + I+H M+ + + +AV+ GQ+ E G ++ +
Sbjct: 514 GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE 553
|
Length = 623 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 9e-15
Identities = 75/264 (28%), Positives = 109/264 (41%), Gaps = 59/264 (22%)
Query: 893 FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952
N +R EV + S + PG ++LVG SG+GKS+ LLR + G I+ +G+ I
Sbjct: 330 LNRVTR-EVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388
Query: 953 ---KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY-------------GNEAASE-AEIV 995
L+ LR I + Q+P S R + G AA+ A ++
Sbjct: 389 DTLSPGKLQALRRDIQFIFQDPYA-SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLL 447
Query: 996 E-VSKKAN-----IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
E V H+F SGGQ+QRI IAR L P +++ D
Sbjct: 448 ERVGLLPEHAWRYPHEF-------------------SGGQRQRICIARALALNPKVIIAD 488
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT---VAHRLATVIN-SDVIVVM 1105
EA SALD I++ L L R I ++H +A V S + VM
Sbjct: 489 EAVSALDVSIRGQIINLLLDLQ-----------RDFGIAYLFISHDMAVVERISHRVAVM 537
Query: 1106 DKGEVVEMGSHSTLVAESQGVYSR 1129
G++VE+G + Q Y+R
Sbjct: 538 YLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 9e-15
Identities = 62/252 (24%), Positives = 115/252 (45%), Gaps = 42/252 (16%)
Query: 269 RPDQLIL--------KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320
R +QL L + ++ IP G A++G +GCGKST++ ++R P++G + +D
Sbjct: 9 RGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDG 68
Query: 321 LNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA---------------DDEQI 365
+I+ K + + IG ++Q + +I V + A +DE+
Sbjct: 69 EHIQHYASKEVARRIGLLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEA 123
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+M A I+ L DQ LSGGQ+QR IA + + I+LLDE T+
Sbjct: 124 VTKAMQATG---ITHLADQSVD-------TLSGGQRQRAWIAMVLAQETAIMLLDEPTTW 173
Query: 426 LDSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
LD + + E L +G T+ + H ++ A + + +G++ G ++
Sbjct: 174 LDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV- 232
Query: 483 TSDFYNRLFTMQ 494
T++ R++ ++
Sbjct: 233 TAELIERIYGLR 244
|
Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 61/246 (24%), Positives = 96/246 (39%), Gaps = 44/246 (17%)
Query: 879 SGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938
++ I E L + S ++ G ++ L+G +GAGKS++L LL Y
Sbjct: 13 YKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72
Query: 939 DPNEGIILIDGKGIKEYNLRRLRSQIG--------LVQQEPLLFSCSIRNNICYGNEAAS 990
P+ G + + G R+ S +G L +E + + + G S
Sbjct: 73 PPDSGTVTVRG---------RVSSLLGLGGGFNPELTGRENIYLNGRL-----LG---LS 115
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
EI E K I +F S L D D V S G K R+A A P I+L+DE
Sbjct: 116 RKEIDE--KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDE 168
Query: 1051 ATSALDAE-SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108
+ DA E+ L T I V+H +++ D +V++KG
Sbjct: 169 VLAVGDAAFQEK----CQRRLRELLKQGK------TVILVSHDPSSIKRLCDRALVLEKG 218
Query: 1109 EVVEMG 1114
++ G
Sbjct: 219 KIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG--------IKEYNL 957
+ S + PG + +VG SG+GK+++L + P+ G + + + E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 958 RRL-RSQIGLVQQEP---LLFSCSIRNNIC----------YGN---EAASEAEIVEVSKK 1000
RRL R++ G V Q P L S NI YGN EA E VE+
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL- 142
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
D I LP SGG +QR+ IAR L+ RP ++ +DE T LD
Sbjct: 143 ----DRIDDLPR-----------TFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD---- 183
Query: 1061 RVIVSA--LEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMGSHS 1117
V V A L+ L G LA + V H LA + +D ++VM +G+VVE G
Sbjct: 184 -VSVQARLLDLLRGLVRELG-LAV----VIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237
Query: 1118 TLVAESQGVYSRL 1130
++ + Y++L
Sbjct: 238 RVLDDPHHPYTQL 250
|
Length = 258 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 49/238 (20%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL---LRFYDPNEGIILIDGKGIKE 954
+LN+ SL +E G +A++G SG+GK+++L + + G IL +G+ K
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICY-----GNEAASEAEIVEVSKKANIHDFISS 1009
++ + + Q + LL ++R + Y +S+A +
Sbjct: 77 DQFQKCVAY--VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKR-------VEDVL 127
Query: 1010 LPDGYDTVVG-EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
L D T +G +SGG+++R++IA LL P +++LDE TS LD+ + +VS L
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINS------------DVIVVMDKGEVVEMG 1114
L A R VI + D I+++ GE+V G
Sbjct: 188 QL-------------------ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 31/205 (15%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
R ++ + S ++ AG+ + + G +G GK+T++ ++A P G++ I++
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-V 69
Query: 328 LKSLRKNIGAVSQEPSLFTG-SLMDNIK----VGNMDADDEQIYNASMMANAHSFISQLP 382
+S + + + +P + T + ++N+ + I+ A
Sbjct: 70 RESYHQALLYLGHQPGIKTELTALENLHFWQRFHG-SGNAATIWEA-----LAQV----- 118
Query: 383 DQYSTELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
G G+ QLS GQ++R+A+AR + P+ +LDE +ALD E L+
Sbjct: 119 -------GLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
Query: 437 AL-ERAMQGRTVILIAHRMSTIVNA 460
+ A QG V+L H+ I +A
Sbjct: 172 LMAAHAAQGGIVLLTTHQPLPIASA 196
|
Length = 209 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 40/239 (16%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+ + + E L + S +I G +V ++G +GAGKS++L L+ Y P G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 945 ILIDGKGIKEYNLRRLRSQIGL-VQQEPLLFSCSIRNNI-----CYGNEAASEAEIVEVS 998
+ + GK + I L +P L + R NI G E+
Sbjct: 84 VKVTGK---------VAPLIELGAGFDPEL---TGRENIYLRGLILGLTRK------EID 125
Query: 999 KKAN-IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+K + I +F + L D D V S G R+A + P I+LLDE + DA
Sbjct: 126 EKVDEIIEF-AELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMGS 1115
+ + L L K+ T + V+H L + D + ++ G++ GS
Sbjct: 181 AFQEKCLERLNELVEKN---------KTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-14
Identities = 68/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ + +Y + V+N+ S I G L+GP+GAGKS++ +LL P+ G I
Sbjct: 5 IDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ-EPLLFSCSIRNNI-CYGNEAASEAEIVEVSKKANI 1003
+ G+ + R R IG+V Q + L ++R N+ +G +E + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS-L 119
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F + L D V LSGG K+R+ +AR L+ P +++LDE T+ LD + +I
Sbjct: 120 LEF-ARLESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174
Query: 1064 VSALEALNPKSSSCGELASRTTQIT-VAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122
L +L + G+ TT A RL D + V++ G + G L+ E
Sbjct: 175 WERLRSLLAR----GKTILLTTHFMEEAERLC-----DRLCVLESGRKIAEGRPHALIDE 225
Query: 1123 SQG 1125
G
Sbjct: 226 QIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-14
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 32/217 (14%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---S 330
IL G L + G+ +AL+G SG GKST+++++A D S+G++ + + +D +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 331 LR-KNIGAVSQEPSLF-TGSLMDNIKV-----GNMDADDEQIYNASMMANAHSFISQLPD 383
LR K++G V Q L T + ++N+++ G A + + QL
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRN--------GAKALLEQL-- 134
Query: 384 QYSTELGQR----GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE--- 436
LG+R QLSGG++QR+A+ARA P +L DE T LD ++ + +
Sbjct: 135 ----GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
Query: 437 ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
+L R G T+IL+ H + D + +GQ+ E
Sbjct: 191 SLNRE-HGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 72/252 (28%), Positives = 103/252 (40%), Gaps = 50/252 (19%)
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL------- 957
+ S + PG + +VG SG+GKS++L L P+ G + E L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 958 -RRL-RSQIGLVQQEP---LLFSCSIRNNIC----------YGN---EAASEAEIVEVSK 999
RRL R++ G V Q P L S NI YGN A E VE+
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP 139
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
I LP SGG +QR+ IAR L+ RP ++ +DE T LD
Sbjct: 140 -----TRIDDLPR-----------AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMGSHST 1118
+ ++ L L LA I V H L + + ++VM +G VVE G
Sbjct: 184 QARLLDLLRGLVRDLG----LAV----IIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235
Query: 1119 LVAESQGVYSRL 1130
++ + Q Y++L
Sbjct: 236 VLDDPQHPYTQL 247
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 63/244 (25%), Positives = 105/244 (43%), Gaps = 65/244 (26%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLD- 327
+ ILKG +LSI G++ A++G +G GKST+ ++A Y GDIL +I DL+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 328 ------------------------------LKSLRKNIGAVSQEPSLFTGSLMDNIKVGN 357
S RK G +P F + + +K+
Sbjct: 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQ--LSGGQKQRIAIARAIVKNPP 415
MD SF+S R V SGG+K+R I + + +
Sbjct: 139 MDP---------------SFLS------------RNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 416 ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAH--RMSTIVNADMIAVVEDGQVT 472
+ +LDE S LD ++ K++ E + + M ++ILI H R+ + D + V+++G++
Sbjct: 172 LAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII 231
Query: 473 ETGT 476
+TG
Sbjct: 232 KTGD 235
|
Length = 252 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-14
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 24/191 (12%)
Query: 269 RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL 328
R +++ G S ++ AG+ + L G +G GK+T++ L+A P+ G I +D +I D D+
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 329 KSLRKNIG---AVSQEPSLFTGSLMDNIKV--GNMDADDEQIYNA-SMMANAHSFISQLP 382
+G A+ +P+L ++ +N++ + ++ I A + A ++ LP
Sbjct: 72 AEACHYLGHRNAM--KPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP--LAHLP 124
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL-ERA 441
Y LS GQK+R+A+AR +V N PI +LDE T+ALD+ + L E +
Sbjct: 125 FGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 442 MQGRTVILIAH 452
QG VI H
Sbjct: 175 AQGGIVIAATH 185
|
Length = 207 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---L 960
L + + PG L G SGAGKS++L L+ P+ G I G I R L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 961 RSQIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVG 1019
R QIG++ Q LL ++ +N+ + I+ + +I +S+ D +
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNV-------AIPLIIAGASGDDIRRRVSAALDKVGLLDK 130
Query: 1020 EKG--CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
K QLSGG++QR+ IAR ++ +PA++L DE T LD I+ E N
Sbjct: 131 AKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
|
Length = 222 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 52/208 (25%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI----DSLNIKDLD-- 327
+L+ SLS+ AG+ V L G SG GKST++ + Y P G IL+ + +++ +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 328 --LKSLRKNIGAVSQ---------------EPSLFTGSLMDNIKVGNMDADDEQIYNASM 370
L+ R IG VSQ EP L G + + +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG----------VPREVAR------ 129
Query: 371 MANAHSFISQLPDQYSTELGQRGVQL-----SGGQKQRIAIARAIVKNPPILLLDEATSA 425
A A +++L L +R L SGG++QR+ IAR + + PILLLDE T++
Sbjct: 130 -AKAADLLTRL------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182
Query: 426 LDSESEKLVQEAL-ERAMQGRTVILIAH 452
LD+ + +V E + E +G ++ I H
Sbjct: 183 LDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 3e-14
Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 20/285 (7%)
Query: 199 AAVMSILFGAIALTYAAPDMQVFNQAKAAGFEI----FQVIQRKPRISYSSKGKEL---- 250
A V+++L+ L + + QA+ A + + + +P + S L
Sbjct: 272 AFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAH 331
Query: 251 EKIDGNIDIRDVCFAYPS--RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308
+K +I+++DV + + L L I G +V +VG +GCGKST+ L
Sbjct: 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391
Query: 309 YDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNA 368
Y P G+IL+D + R A+ + LF L+ + + D+ Q Y
Sbjct: 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-DLIGPDEGEHASLDNAQQY-L 449
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ A + +ST LS GQ++R+A+ A +++ PILL DE + D
Sbjct: 450 QRLEIADK-VKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDP 503
Query: 429 ESEKLVQEAL--ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
++ E L + QG+T+I+I+H AD I + G +
Sbjct: 504 AFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 3e-14
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
SR E + S + G + + GP+G GK+++L +L P+ G + +G + E
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIHDFISSLPDGY 1014
R+ + L L S N+ + ++ I + + F LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAA- 126
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069
QLS GQ++R+A+AR L R + +LDE T+ALD ++ L A
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 41/247 (16%)
Query: 886 IEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I N F + E LN SL+I G V ++G +GAGKS++L + P G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC---SIRNNICYGNEAASEAEI------ 994
ILIDG + + ++ + + + V Q+PL + +I N+ A S +
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLAL---AESRGKKRGLSSA 118
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+ ++++ + ++ L G + + ++ LSGGQ+Q +++ L P I+LLDE T+A
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS----------DVIVV 1104
LD PK++ + T +I H+L T++ + + +++
Sbjct: 179 LD---------------PKTAE--FVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIM 221
Query: 1105 MDKGEVV 1111
+ G++V
Sbjct: 222 LHSGKIV 228
|
Length = 263 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-14
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 43/241 (17%)
Query: 886 IEFQNI--KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-- 941
+E +NI F V L+N SL++ G V+L G +GAGKS+++ +L Y P+
Sbjct: 6 LEMKNITKTF-----GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGT 59
Query: 942 -EGIILIDGKGIKEYNLRRL-RSQIGLVQQEPLLFS-CSIRNNICYGNE---------AA 989
EG I+ +G+ ++ N+R R+ I ++ QE L S+ NI GNE A
Sbjct: 60 YEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDA 119
Query: 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
++ + + I+ T VG L GQ+Q + IA+ L K+ +++LD
Sbjct: 120 MYLRAQKLLAQLKLD--INP-----ATPVGN----LGLGQQQLVEIAKALNKQARLLILD 168
Query: 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108
E T++L V++ + L +C I ++H+L V SD I V+ G
Sbjct: 169 EPTASLTESETAVLLDIIRDLKAHGIAC---------IYISHKLNEVKAISDTICVIRDG 219
Query: 1109 E 1109
Sbjct: 220 R 220
|
Length = 506 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-14
Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 47/247 (19%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLV--ARFYDPSNGDIL----------- 317
+ +LK S +I G+++ ++G SG GKS ++ ++ Y+P++G I+
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGY 71
Query: 318 ----------------------IDSLNIKDLDLKSLRKNIGAVSQEPSLFTG--SLMDNI 353
+D N+ D + +RK I + Q G +++DN+
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 354 KVGNMDADDEQIYNA-SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412
++A +E Y + A I + Q S + LSGG+KQR+ +AR + K
Sbjct: 132 ----LEALEEIGYEGKEAVGRAVDLIEMV--QLSHRITHIARDLSGGEKQRVVLARQLAK 185
Query: 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDG 469
P + L DE T LD ++ KLV ALE A++ G +++L +H I + +D +E+G
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245
Query: 470 QVTETGT 476
++ E GT
Sbjct: 246 EIKEEGT 252
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 43/245 (17%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI--KEY 955
R V + S + G +A++G +G+GKS++ +L +P G ILI+ + +Y
Sbjct: 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82
Query: 956 NLR----RL-----------RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKK 1000
+ R R+ R +IG + PL + + +I E +
Sbjct: 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-------EPEQRRKQIFETLRM 135
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ LPD L+ GQKQR+A+AR L+ RP I++ DEA ++LD
Sbjct: 136 VGL------LPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119
+++ + L K + I V + + + SD ++VM +GEVVE GS + +
Sbjct: 186 SQLINLMLELQEKQG--------ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
Query: 1120 VAESQ 1124
+A
Sbjct: 238 LASPL 242
|
Length = 267 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-14
Identities = 72/268 (26%), Positives = 122/268 (45%), Gaps = 48/268 (17%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
NI F + ++ + N S ++ G +A+VG SG+GKS L+R + G++ D
Sbjct: 19 NIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
Query: 950 KGIKEYN-------------LRRLR-SQIGLVQQEPL-----LFSC------SIRNNICY 984
++ + +R +R + + ++ QEP+ +F+ SIR +
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA 137
Query: 985 GNEAA-SEAE-IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042
E A EA+ +++ + +S P QLSGG +QR+ IA L R
Sbjct: 138 SREEAMVEAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCR 186
Query: 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101
PA+++ DE T+ALD + I+ ++ L K S G I + H + V +D
Sbjct: 187 PAVLIADEPTTALDVTIQAQILQLIKVLQ-KEMSMG-------VIFITHDMGVVAEIADR 238
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
++VM +GE VE GS + Q Y+R
Sbjct: 239 VLVMYQGEAVETGSVEQIFHAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 69/237 (29%), Positives = 99/237 (41%), Gaps = 54/237 (22%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK--------GIKEYNL 957
+ S + PG + +VG SG+GK+++L L P+ G + + + E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 958 RRL-RSQIGLVQQEP---LLFSCSIRNNIC----------YGN---EAASEAEIVEVSKK 1000
RRL R++ G V Q P L S NI YG+ A E VE+
Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA- 142
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
I LP + SGG +QR+ IAR L+ P ++ +DE T LD
Sbjct: 143 ----ARIDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD---- 183
Query: 1061 RVIVSA--LEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVMDKGEVVEMG 1114
V V A L+ L G LA + V H LA + + ++VM +G VVE G
Sbjct: 184 -VSVQARLLDLLRGLVRELG-LAV----VIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-14
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
R + + S + G + + GP+G+GK+++L +L P G +L++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016
R + L + + S+ N+ + + S+ ++ E + ++ F D
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-------EDR 121
Query: 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069
V QLS GQ++R+A+AR LL + +LDE T+ALD A+
Sbjct: 122 PVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 29/243 (11%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
TV N +++I G A++GP+G GKS++L L R P G + +DG+ I+ Y + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 962 SQIGLVQQ----------EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLP 1011
+IGL+ Q + L+ + + + E V + +A
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT--------- 131
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
G + + LSGGQ+QR IA L + AIMLLDE T+ LD + ++ L LN
Sbjct: 132 -GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
+ LA+ + A R A+ ++ + +G++V G+ +V + + R+Y
Sbjct: 191 REKGY--TLAAVLHDLNQACRYAS-----HLIALREGKIVAQGAPKEIV--TAELIERIY 241
Query: 1132 QLQ 1134
L+
Sbjct: 242 GLR 244
|
Length = 265 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-14
Identities = 52/189 (27%), Positives = 80/189 (42%), Gaps = 42/189 (22%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
R E + + S + G V + GP+GAGK+S+L +L P+ G +L G+ I
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI---- 65
Query: 957 LRRLRSQ-------IG--------LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKA 1001
RR R + +G L E L F + + + E +
Sbjct: 66 -RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGP-------GDDEALWEALAQV 117
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ F D V QLS GQ++R+A+AR L R + +LDE +A+D +
Sbjct: 118 GLAGF-------EDVPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQG-- 164
Query: 1062 VIVSALEAL 1070
V+ LEAL
Sbjct: 165 --VARLEAL 171
|
Length = 204 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 7e-14
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---R 959
VL+N S I G +A+VG SG+GKS++L LL P G ++ +G+ + + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 960 LRSQ-IGLVQQ-EPLLFSCSIRNNICY----GNEAASEAEIVEVSKKANIHDFISSLPDG 1013
LR+Q +G + Q LL + N+ G + +E +A + ++++ G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRA--LEMLAAV--G 134
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
+ + +LSGG++QR+AIAR L+ P ++L DE T LDA + I L LN
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
|
Length = 233 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957
R V + S + G +A++G +G+GKS++ +L +P G +LID + +
Sbjct: 23 RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGD 81
Query: 958 RRLRSQ-IGLVQQEP-----------LLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
RSQ I ++ Q+P + +R N E + I + + + D
Sbjct: 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPD 141
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
S P L+ GQKQR+ +AR L+ RP +++ DEA ++LD +++
Sbjct: 142 HASYYPH-----------MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 190
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVA 1121
+ L K + I V L + + SD ++VM +GEVVE GS + ++A
Sbjct: 191 LMLELQEKQG--------ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 20/211 (9%)
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339
LS G+++ L+G +G GK+T++ + P+ G + + + ++IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVP 55
Query: 340 QE-------PSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
Q P ++M + + G++ +A+ + L TEL R
Sbjct: 56 QRHEFAWDFPISVAHTVM-SGRTGHIG-----WLRRPCVADFAAVRDALRRVGLTELADR 109
Query: 393 GV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILI 450
V +LSGGQ+QR+ +ARA+ P +LLLDE + LD +++L+ E A G +++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 451 AHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481
H ++ + V+ +G+V GT L
Sbjct: 170 THDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 37/230 (16%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-------- 326
L L+I G+MVAL+G SG GKST++ ++ GD S +I+ L
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI---TGDKSAGS-HIELLGRTVQREG 75
Query: 327 ----DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
D++ R N G + Q+ +L S+++N+ +G + + S+ ++
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGS-------TPFWRTCFSWFTRE 128
Query: 382 PDQYS----TELG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
Q + T +G QR LSGGQ+QR+AIARA+++ ++L DE ++LD ES
Sbjct: 129 QKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 432 KLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478
++V + L Q G TV++ H++ + + I + G V G+
Sbjct: 189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 34/218 (15%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL-----NIKDLDLK 329
L S AG++ AL+G +G GKST++ +++ Y P G ILID +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA---- 75
Query: 330 SLRKNIGAVSQE----PSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL---- 381
+L + + QE P + ++ +N+ +G + + + A + L
Sbjct: 76 ALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 382 -PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS-ESEKL--VQEA 437
PD T L LS GQ+Q + IA+A+ +N ++ DE TS+L + E E+L V
Sbjct: 133 DPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185
Query: 438 LERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474
L RA +GR ++ ++HRM I D I V +DG+ T
Sbjct: 186 L-RA-EGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS--NGDILIDSLNIKDLDLKSL- 331
L G L + G+ V L G +G GKST++ +++ Y +G+I +K +++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
R I + QE +L S+ +NI +GN + ++ +M A + + +L Q +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLREL--QLDADN 134
Query: 390 GQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALERAMQGRTV 447
R V GGQ+Q + IA+A+ K +L+LDE +S+L + E+E L+ + G
Sbjct: 135 VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVAC 194
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQ 470
+ I+H+++ + D I V+ DGQ
Sbjct: 195 VYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 28/223 (12%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEYNL 957
V L+ L++ PG V L G +GAGKS+++ +L Y P+ +G I G +K N+
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNI 72
Query: 958 RRL-RSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIV---EVSKKANIHDFIS--SL 1010
R R+ I ++ QE L S+ NI GNE + + +A + + L
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQL 130
Query: 1011 PDGYDT-VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069
T VG+ G GGQ+Q + IA+ L K+ +++LDE +S+L + +++ +
Sbjct: 131 DADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1070 LNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111
L +C + ++H+L V D I V+ G+ V
Sbjct: 187 LKAHGVAC---------VYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 56/206 (27%)
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
P+ +L + SL PG K+ ++G +GAGKS++L ++ G GIK
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP-APGIK----- 69
Query: 959 RLRSQIGLVQQEPLL-FSCSIRNNICYG-----------NE---------------AASE 991
+G + QEP L + ++R N+ G NE A +
Sbjct: 70 -----VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 992 AEIVEVSKKANIHDFISSL---------PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042
AE+ E+ A+ D L P D V + LSGG+++R+A+ R LL +
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGERRRVALCRLLLSK 179
Query: 1043 PAIMLLDEATSALDAESERVIVSALE 1068
P ++LLDE T+ LDAES V+ LE
Sbjct: 180 PDMLLLDEPTNHLDAES----VAWLE 201
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 59/252 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI- 944
++ Q ++ +Y + +V + L + G + LVGPSG GKS+ LLR E I
Sbjct: 4 LKLQAVRKSYDGKTQV--IKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLERIT 57
Query: 945 ---ILIDGKGI-----KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAE 993
I I G+ + + + I +V Q L+ S+R N+ YG +AE
Sbjct: 58 SGEIWIGGRVVNELEPADRD-------IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE 110
Query: 994 IVE-VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
I E V++ A I + + L D K +LSGGQ+QR+A+ R +++ PA+ L DE
Sbjct: 111 IEERVAEAARILE-LEPLLD-------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162
Query: 1053 SALDAE---SERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIV 1103
S LDA+ R+ + L L +TT + V H LA D +V
Sbjct: 163 SNLDAKLRVQMRLEIQRLHR---------RL--KTTSLYVTHDQVEAMTLA-----DRVV 206
Query: 1104 VMDKGEVVEMGS 1115
VM+ G ++G+
Sbjct: 207 VMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 31/236 (13%)
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNLRRLRSQI 964
+L++ G + +VG SG GKS+ ++ +G + GK G+K+ R +RS I
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 965 GLVQQEPLLFSCSIRNNICYGNEAA----------SEAEIVEVSKKANIHDFISSLPDGY 1014
++ Q+PL S + R I G A S E+ + K + + LP+
Sbjct: 101 QMIFQDPLA-SLNPRMTI--GEIIAEPLRTYHPKLSRQEVKDRVK--AMMLKVGLLPN-- 153
Query: 1015 DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKS 1074
++ + SGGQ QRI IAR L+ P +++ DE SALD + +V+ L+ L
Sbjct: 154 --LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-- 209
Query: 1075 SSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
E+ + I +AH LA V + SD ++VM G VE+G++ + Y++
Sbjct: 210 ----EMG--LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 66/269 (24%), Positives = 122/269 (45%), Gaps = 51/269 (18%)
Query: 885 RIEFQNIK--FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL----ALLL--- 935
+I+ +NI FN E+ L+N S++I G +A++G +G+GK++ + ALLL
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 936 -----------------RFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQ--EPLLFSC 976
E +++ + K ++ +R ++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 977 SIRNNICYG--NEAASEAEIVEVSKKANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQR 1032
+I +I +G + S+ E + + K +I L + Y + +LSGGQK+R
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAK-----YIELVGLDESY---LQRSPFELSGGQKRR 173
Query: 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
+A+A L P ++ DE T+ LD + + I+ + LN + T I V H
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK---------TIILVTHD 224
Query: 1093 LATVIN-SDVIVVMDKGEVVEMG-SHSTL 1119
L V+ + + G++++ G ++ L
Sbjct: 225 LDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 30/203 (14%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR- 958
E+++L L ++ G +AL+G SG+GKS++LA+L D + G + + G+ + + +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 959 --RLRSQ-IGLVQQEPLLF-SCSIRNNICY------GNEAASEAEIVEVSKKANIHDFIS 1008
+LR++ +G V Q +L + + N+ + S + ++ + +
Sbjct: 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD 141
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
LP QLSGG++QR+A+AR RP ++ DE T LD ++ I L
Sbjct: 142 HLP-----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLF 190
Query: 1069 ALNPKSSSCGELASRTTQITVAH 1091
+LN + TT I V H
Sbjct: 191 SLNREHG--------TTLILVTH 205
|
Length = 228 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 61/253 (24%), Positives = 125/253 (49%), Gaps = 34/253 (13%)
Query: 246 KGKELEKIDGNIDIRDVCFAYPSRPDQLI--LKGFSLSIPAGKMVALVGSSGCGKSTVIS 303
K E+E + I +R+V Y S ++ + SL + G++ +VG+SG GK+T+
Sbjct: 269 KECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSK 328
Query: 304 LVARFYDPSNG-------DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNI-K 354
++A +P++G D +D ++ IG + QE L+ +++DN+ +
Sbjct: 329 IIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE 388
Query: 355 VGNMDADDE-----QIYNASMMA----NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIA 405
++ DE + M+ A + + PD+ LS G++ R+A
Sbjct: 389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE-----------LSEGERHRVA 437
Query: 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADM 462
+A+ ++K P I++LDE T +D ++ V ++ +A + +T I+++H M +++ D
Sbjct: 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497
Query: 463 IAVVEDGQVTETG 475
A++ DG++ + G
Sbjct: 498 AALMRDGKIVKIG 510
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 62/217 (28%), Positives = 110/217 (50%), Gaps = 27/217 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS--LNIKDLDLKSLR 332
+K S ++ G+ +A++G +G GKST+ ++A +P++G++LID L+ D +S R
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
I + Q+PS SL ++ QI + + N Q Q L Q
Sbjct: 89 --IRMIFQDPS---TSLNPRQRIS-------QILDFPLRLNTDLEPEQREKQIIETLRQV 136
Query: 393 GV----------QLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKLVQEALE-R 440
G+ L+ GQKQR+ +ARA++ P +++ DEA ++LD S +L+ LE +
Sbjct: 137 GLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ 196
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
QG + I + + + + +D + V+ G+V E G+
Sbjct: 197 EKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
|
Length = 267 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 42/192 (21%)
Query: 883 KGRIEFQNIKFNYPS-RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
+ ++N+ + P + +LNN S ++PG AL+G SGAGK+++L +L
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG 60
Query: 942 --EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS-IRNNICYGNEAASEAEIVEVS 998
G ILI+G+ + + N +R G V+Q+ + +R E + S
Sbjct: 61 VITGEILINGRPLDK-NFQR---STGYVEQQDVHSPNLTVR-------------EALRFS 103
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
A + LS Q++R+ I L +P+I+ LDE TS LD++
Sbjct: 104 --ALLRG-------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
Query: 1059 SERVIVSALEAL 1070
+ IV L+ L
Sbjct: 143 AAYNIVRFLKKL 154
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 29/225 (12%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLDL 328
D+ ILKG +L++ G++ A++G +G GKST+ +A Y+ ++G IL ++ +L+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 329 KS-LRKNIGAVSQEPSLFTGSLMDN-IKV-----------GNMDADDEQIYNASMMANAH 375
R + Q P G ++ +D D + + A
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD---FLKLLKAKLA 128
Query: 376 SFISQLPDQYSTELGQRGVQ--LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
+ +++ R V SGG+K+R I + + P + +LDE S LD ++ K+
Sbjct: 129 LL--GMDEEFLN----RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 434 VQEALER-AMQGRTVILIAH--RMSTIVNADMIAVVEDGQVTETG 475
V E + R R+ ++I H R+ + D + V+ DG++ ++G
Sbjct: 183 VAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 2e-13
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 56/202 (27%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
+L + SL PG K+ ++G +GAGKS++L ++ EG GIK
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPA-PGIK--------- 71
Query: 963 QIGLVQQEPLL-FSCSIRNNICYG-----------NE---------------AASEAEIV 995
+G + QEP L ++R N+ G NE AA + E+
Sbjct: 72 -VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQ 130
Query: 996 EVSKKANIHDFISSL---------PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046
E+ A+ D S L P D V +LSGG+++R+A+ R LL++P ++
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGERRRVALCRLLLEKPDML 185
Query: 1047 LLDEATSALDAESERVIVSALE 1068
LLDE T+ LDAES V+ LE
Sbjct: 186 LLDEPTNHLDAES----VAWLE 203
|
Length = 556 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 43/204 (21%), Positives = 89/204 (43%), Gaps = 44/204 (21%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-LKSLRK 333
++ S + AG++V + G G G++ + + P++G+I +D + ++R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 334 NIGAVSQEPS---LFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
I V ++ L S+ +NI +S L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI-----------------------ALSSL-------- 104
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVI 448
LSGG +Q++ +AR + ++P +L+LDE T +D ++ + + A G+ V+
Sbjct: 105 ------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 449 LIAHRMSTIVN-ADMIAVVEDGQV 471
LI+ + ++ D I V+ +G++
Sbjct: 159 LISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 4e-13
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 33/251 (13%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK------ 953
E VL SLQ G ++++G SG+GKS+ L + P+EG I+++G+ I
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 954 -------EYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDF 1006
+ LR LR+++ +V Q L+S + N + +++ +SK+
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWS----HMTVLENVMEAPIQVLGLSKQEARERA 132
Query: 1007 ISSLPD-GYD-TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
+ L G D G+ LSGGQ+QR++IAR L P ++L DE TSALD E ++
Sbjct: 133 VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRL--ATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122
++ L + T + V H + A ++S VI + +G++ E G+ L
Sbjct: 193 RIMQQLAEEGK---------TMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLFGN 242
Query: 1123 SQGVYSRLYQL 1133
Q RL Q
Sbjct: 243 PQS--PRLQQF 251
|
Length = 257 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 60/234 (25%), Positives = 114/234 (48%), Gaps = 20/234 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
ID R+V Y D+L++ G S + G+ L+G +G GK+T + ++ P G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+ + + R+ +G V Q DN+ ++ ++ +A +
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQ---------FDNLDPDFTVRENLLVFGRYFGLSAAA 114
Query: 377 FISQLPD-----QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
+ +P + + + +LSGG K+R+ +ARA+V +P +L+LDE T+ LD ++
Sbjct: 115 ARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174
Query: 432 KLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
L+ E L + +G+T++L H M D + V+E+G+ G H+L+++
Sbjct: 175 HLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 5e-13
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 14/198 (7%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL-ALLLRFYDPN-EGIILIDGKGIKEYNL 957
E T+LN + PG +A++GPSG+GKS++L AL R N G IL + + + L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 958 RRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSL--PDGY 1014
+R G V Q+ +L+ ++R + + + + + K IS L
Sbjct: 140 KR----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 1015 DTVVGEKGCQ-LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073
+T++G + +SGG+++R++IA +L P++++LDE TS LDA + +V L +L K
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255
Query: 1074 S----SSCGELASRTTQI 1087
+S + +SR Q+
Sbjct: 256 GKTIVTSMHQPSSRVYQM 273
|
Length = 659 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 22/192 (11%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
SR ++++ +G S ++ AG+ + + G +G GK+T++ ++A P +G++ +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN-----GTA 63
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
L R L+ G L +K + A + N A H + +
Sbjct: 64 LAEQRDE----PHRNILYLGHL-PGLK-PELSALE----NLHFWAAIHGGAQRTIEDALA 113
Query: 388 ELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE-R 440
+G G QLS GQ++R+A+AR + P+ +LDE T+ALD L+ L
Sbjct: 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
Query: 441 AMQGRTVILIAH 452
+G V+L H
Sbjct: 174 LARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 41/186 (22%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI--DGKGIKEYN---- 956
VL N SL + G V L GPSG+GKS++L L Y P+EG IL+ +G+ +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 957 --LRRLRSQIGLVQQ---------------EPLLFSCSIRNNICYGNEAASEAEIVEVSK 999
L R+ IG V Q EPLL + + + A +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKAAD-------LLT 137
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ N+ + + SL SGG++QR+ IAR + I+LLDE T++LDA +
Sbjct: 138 RLNLPERLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187
Query: 1060 ERVIVS 1065
V+V
Sbjct: 188 RAVVVE 193
|
Length = 235 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-13
Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 59/191 (30%)
Query: 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSL 344
G+++ +VG G GK+T+ +AR P G ++ ++ I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 345 FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404
+G + SG + R+
Sbjct: 54 --------------------------------------------VGGKKASGSGELRLRL 69
Query: 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-------QGRTVILIAHRMSTI 457
A+A A P +L+LDE TS LD+E E L+ E + + TVIL + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 458 VNADMIAVVED 468
A + +
Sbjct: 130 GPALLRRRFDR 140
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-12
Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 43/256 (16%)
Query: 257 IDIRDVCFAYPS-RPDQLILKGFSLSIPAGKMVALVGSSGCGKS-TVISLVARFYDPS-- 312
+ I ++ A+ + + ++ SL I AG+ +ALVG SG GKS T +S++ P
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVV 65
Query: 313 --NGDILI---DSLNIKDLDLKSLRKN-IGAVSQEPSLFTGSL--MDNIKVGNMDADDEQ 364
+GDI L+ + L+ +R N I + QEP + SL + + ++Q
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV---SLNPLHTL--------EKQ 114
Query: 365 IYNASMMAN------AHSFISQLPD-----QYSTELGQRGVQLSGGQKQRIAIARAIVKN 413
+Y + A I D Q + L QLSGG++QR+ IA A++
Sbjct: 115 LYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTR 174
Query: 414 PPILLLDEATSALDSESE----KLVQEALERAMQGRTVILIAHRMSTIVN--ADMIAVVE 467
P +L+ DE T+ALD + +L++E L++ + ++ I H +S IV AD +AV++
Sbjct: 175 PELLIADEPTTALDVSVQAQILQLLRE-LQQEL-NMGLLFITHNLS-IVRKLADRVAVMQ 231
Query: 468 DGQVTETGTHHSLLQT 483
+G+ E +L
Sbjct: 232 NGRCVEQNRAATLFSA 247
|
Length = 529 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ Y + + S ++ G L+GP+GAGK++ + +L P G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLL-FSCSIRNNI-----CYGNEAASEAEIVEVSK 999
+ G + R +R +IG+V Q+ + + N+ YG A E +
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----R 111
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ DF+ L + D +V SGG ++R+ IAR+L+ RP ++ LDE T LD ++
Sbjct: 112 IDELLDFVG-LLEAADRLV----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT 166
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQ-ITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
+ +E L + L TT + A +L D + ++D G ++ G+
Sbjct: 167 RAHVWEYIEKLKEEFGMTILL---TTHYMEEAEQLC-----DRVAIIDHGRIIAEGT 215
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-12
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 29/226 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI-------------LIDSL 321
++ S S+ G+ +A+VG SG GKS + R + + G + +I+
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 322 NIKDLDLKSLR-KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNA----SMMANAHS 376
++ +R ++ + QEP SL VG A+ +++ M A
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEP---MTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKR 148
Query: 377 FISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKL 433
+ Q +P+ T L + QLSGG +QR+ IA A+ P +L+ DE T+ALD + ++
Sbjct: 149 MLDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207
Query: 434 VQ--EALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
+Q + L++ M VI I H M + AD + V+ G+ ETG+
Sbjct: 208 LQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-12
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ R + Y +LKG ++ AG++ AL+G +G GKST++ ++A P +G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 317 LIDSLNIKDLD-LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANA 374
I L K+ + I V QEP LF S+ +NI G + M
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQA----SMQKMKQ- 123
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKL 433
++ L +L L +Q + I R ++++ IL+LDE T++L +E+E+L
Sbjct: 124 --LLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 434 VQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480
E QG ++ I+H++ I AD I+V+ DG + +G L
Sbjct: 180 FSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 25/229 (10%)
Query: 268 SRPDQLI--LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
R ++ I ++ S IP G++V +G++G GKST + ++ P++G + ++ +
Sbjct: 31 HRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLM--DNIKVGNMDADDEQIYN--ASMMANAHSFISQL 381
+ LR IG V + L D+++V + IY A F++++
Sbjct: 91 RREEYLRS-IGLVMGQKLQLWWDLPALDSLEV------LKLIYEIPDDEFAERLDFLTEI 143
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
D L +LS GQ+ R +A A++ P +L LDE T LD Q +
Sbjct: 144 LD-LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NAQANIREF 198
Query: 442 MQ------GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
++ TV+L H I D + +++ GQ+ GT L +
Sbjct: 199 LKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 2e-12
Identities = 37/81 (45%), Positives = 54/81 (66%), Gaps = 11/81 (13%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQG--RTVILIAH 452
QLSGG+K R+A+A+ +++NP +LLLDE T+ LD ES EALE A++ TVIL++H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSH 125
Query: 453 -R--MSTIVNADMIAVVEDGQ 470
R + + A I +EDG+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ F + +Y ++ L+ SL I G V L+G +GAGK+++L L G I
Sbjct: 6 LSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 946 LIDGKGIKEYNLRR-LRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANI 1003
+ DGK I ++ + +R + +V + +FS ++ N+ G A + E + +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
++ P ++ + G +SGG++Q +AI R L+ +P ++LLDE + L
Sbjct: 121 YEL---FPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 39/244 (15%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID----SLNIKDLDLKSLR-- 332
SL I G++ L+G SG GKST++ V S G +L+ S+++ + D +LR
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 333 --KNIGAVSQEPSLFTG-SLMDNIKVG----------NMDADDEQIYNASMMANAHSFIS 379
+ V Q+ +L ++ +N+ G DEQ+ + ++
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQL----ELVG----LA 155
Query: 380 QLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEAL 438
Q D+ EL SGG +QR+ +ARA PILL+DE SALD +L E L
Sbjct: 156 QWADRKPGEL-------SGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 439 E-RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS-LLQTSDFYNRLFTMQN 495
E ++ +T++ ++H + + + IA++E G++ + GT +L ++ Y F + +
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF-VAH 267
Query: 496 LRPI 499
P+
Sbjct: 268 TNPL 271
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 39/179 (21%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +N+ ++ R VL++ SL+++PG + L+GP+GAGKS+++ ++L P+EG+I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQE-------PLLFSCSIRNNICYGNEAASEAEIVEVS 998
+GK LR IG V Q+ PL + +R + +I+
Sbjct: 62 KRNGK------LR-----IGYVPQKLYLDTTLPLTVNRFLRL-----RPGTKKEDILPAL 105
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQ-LSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
K+ I + Q LSGG+ QR+ +AR LL RP +++LDE T +D
Sbjct: 106 KRVQAGHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-12
Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 46/259 (17%)
Query: 218 MQVFNQAKAAGFEIFQVIQRKPRISYSSKGK------ELEKIDGNIDIRDVCFAYPSRPD 271
+QV + K+ F+ +V + + +E D I ++ P+
Sbjct: 407 LQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--G 464
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331
++++ S +P+G + + G +GCGKS++ ++ + G + +
Sbjct: 465 DVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------- 513
Query: 332 RKNIGAVSQEPSLFTGSLMDNI----------KVGNMDADDEQIYNASMMANAHSFISQL 381
+ + V Q P + G+L D I + G D D EQI + QL
Sbjct: 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD----------NVQL 563
Query: 382 PDQYSTELGQRGVQ-----LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
E G VQ LSGG+KQRIA+AR P +LDE TSA+ + E +
Sbjct: 564 THILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYR 623
Query: 437 ALERAMQGRTVILIAHRMS 455
G T+ ++HR S
Sbjct: 624 LCREF--GITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-12
Identities = 61/218 (27%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 846 IPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKG--RIEFQNIKFNYPSRPEVTV 903
+PT++SA AF L K + P E +E +N+ F Y
Sbjct: 286 LPTLLSAQV----AFNKL-NKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD------ 334
Query: 904 LNNFS-----LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
N FS L I+ G + L+G +G+GKS++ LL Y P G IL+DGK +
Sbjct: 335 -NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPE 393
Query: 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA-----EIVEVSKKANIHD-FISSLPD 1012
R V + LF + G A E ++++ K + D IS+L
Sbjct: 394 DYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLELEDGRISNL-- 448
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050
+LS GQK+R+A+ L + I+LLDE
Sbjct: 449 -----------KLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 25/253 (9%)
Query: 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
+N+ Y R V+ + SL + G V L+GP+GAGK++ +++ + G I+ID
Sbjct: 7 KNLAKAYKGR---RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63
Query: 949 GKGIKEYNLR-RLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKAN--IH 1004
+ I L R R IG + QE +F S+ +N+ + + + +AN +
Sbjct: 64 DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELME 123
Query: 1005 DF-ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
+F I L D G LSGG+++R+ IAR L P +LLDE + +D S I
Sbjct: 124 EFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123
+E L + S G L IT + T+ + ++ +G ++ G+ + ++ +
Sbjct: 177 KRIIEHL--RDSGLGVL------ITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
Query: 1124 QGVYSRLYQLQAF 1136
R+Y + F
Sbjct: 229 H--VKRVYLGEDF 239
|
Length = 241 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 41/201 (20%)
Query: 260 RDVCFAYPS-RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS--NGDI 316
+++ + P + +L S + G + AL+G SG GK+T++ ++A G+I
Sbjct: 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
LI+ + K+ +++ G V Q+ N+ V E +
Sbjct: 67 LINGRPLD----KNFQRSTGYVEQQDVHS-----PNLTV------REAL----------- 100
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
++S L RG LS Q++R+ I + P IL LDE TS LDS++ +
Sbjct: 101 -------RFSALL--RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149
Query: 437 ALER-AMQGRTVILIAHRMST 456
L++ A G+ ++ H+ S
Sbjct: 150 FLKKLADSGQAILCTIHQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 22/214 (10%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
D+ + S +P G++ L+G +G GK+T ++ +P+ G+I + N L +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI---TWNGGPLS-QE 69
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASM----MANAHSFISQLPDQY- 385
++ IG + +E L+ M +D+ Y A + A + ++
Sbjct: 70 IKNRIGYLPEERGLY----------PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE 119
Query: 386 -STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA-LERAMQ 443
+ ++ +LS G +Q+I A++ P +L+LDE S LD + +L+++A E +
Sbjct: 120 IVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179
Query: 444 GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
G T+I +HRM + D + +++ GQ GT
Sbjct: 180 GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-12
Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 18/208 (8%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+D+ ++ F Y DQ +L+ S +PAG ++ L GS+G GK+T++ L+A +P G+I
Sbjct: 2 LDVIELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
L + +IK DL + +K + V + + + +Y+ A
Sbjct: 59 LFERQSIKK-DLCTYQKQLCFVGHRSGINP----------YLTLRENCLYDIHFSPGAVG 107
Query: 377 FISQLPDQYSTE--LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES-EKL 433
I++L +S E + LS GQK+++A+ R + + LLDE ALD S +
Sbjct: 108 -ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTI 166
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNAD 461
+ + E +G V+L +H+ + AD
Sbjct: 167 ITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 68/248 (27%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948
+N+ F P R T+L+ SL G L+G +G+GKS++L +L R P+EG IL+D
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 949 GKGIKEYNLRRLRSQIG-LVQQEPLLFSCSIRNNICYGN----------EAASEAEIVEV 997
+ ++ ++ + ++ L QQ P ++R + G AA ++ E
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ L D LSGG++QR IA + + +LLDE TSALD
Sbjct: 132 ISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-----SDVIVVMDKGEVVE 1112
+ V L ++ S G T I V H IN D +V + GE++
Sbjct: 181 AHQ---VDVLALVHRLSQERG-----LTVIAVLHD----INMAARYCDYLVALRGGEMIA 228
Query: 1113 MGSHSTLV 1120
G+ + L+
Sbjct: 229 QGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 6e-12
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVL----ALLLRFYDPNEGIIL----IDGKGIKEY 955
L+ L I G VAL+GPSG+GKS++L L+ I L + +G
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 956 NLRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAAS---EAEIVEVSKKANIHDFISSLP 1011
++R+ R+ G + QQ L+ S+ N+ G ++ +++ +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
G ++ LSGGQ+QR+AIAR L+++ ++L DE ++LD ES R+++ L +N
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
|
Length = 262 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 61/248 (24%), Positives = 101/248 (40%), Gaps = 40/248 (16%)
Query: 891 IKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950
S V + S +I G V +G +GAGKS+ L +L P G + ++GK
Sbjct: 30 FHRKERSIEAV---QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGK 86
Query: 951 ---GIKEYNLRRLRSQIGLVQQ----EPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+E LR + +G Q P L S + + E + + A
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV-------LKLIYE---IPDDEFAER 136
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
DF++ + D + + +LS GQ+ R +A LL P ++ LDE T LD ++ I
Sbjct: 137 LDFLTEILD-LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV------IVVMDKGEVVEMGSHS 1117
L+ N Q TV L T I D+ ++++D+G++V G+ +
Sbjct: 196 REFLKEYN-----------EERQATVL--LTTHIFDDIATLCDRVLLIDQGQLVFDGTLA 242
Query: 1118 TLVAESQG 1125
L +
Sbjct: 243 QLQEQFGP 250
|
Length = 325 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 6e-12
Identities = 48/197 (24%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF 345
++ A +G +G GK+T +S++ P++G +L+ +I + +L ++R+++G Q LF
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILF 1015
Query: 346 -----TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400
++ ++ ++ Q+ +M+ + + L + + E LSGG
Sbjct: 1016 HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-----TGLHHKRNEE----AQDLSGGM 1066
Query: 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI-VN 459
++++++A A V + +++LDE TS +D S + + + L + GRT+I+ H M +
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLL 1126
Query: 460 ADMIAVVEDGQVTETGT 476
D IA++ G++ +GT
Sbjct: 1127 GDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-12
Identities = 55/216 (25%), Positives = 113/216 (52%), Gaps = 24/216 (11%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK-SLRK 333
LK +L++ G++ AL+G +G GKST++ +++ ++P+ G I I+++N LD K + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNM-----------DADDEQIYNASMMANAHSFISQL 381
IG + QE S+ ++++N+ +G D + ++ A+MM L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-RAAMML--------L 131
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALER 440
+L ++ LS KQ + IA+ ++ + ++++DE TS+L + E + L +
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
+G ++ I+H+++ I D V++DG +G
Sbjct: 192 RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 8e-12
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949
+ F+Y +P +L S + G + L G +GAGK+++L L+ +P +G IL +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 950 KGIKEYNLRRLRSQIGLVQQE----PLLFSCSIRNNICYGNEAASEA----EIVEVSKKA 1001
+ IK+ +L + Q+ V P L ++R N Y + A E+ +
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCRLFSLE 118
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
++ D+ L LS GQK+++A+ R + + + LLDE ALD S
Sbjct: 119 HLIDYPCGL--------------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLL 164
Query: 1062 VIVSALEA 1069
I++ ++
Sbjct: 165 TIITKIQE 172
|
Length = 200 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 10/187 (5%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
LKG S +I G++V +G +G GK+T + +++ P++G++ + L + K +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWKRRKKFLRR 95
Query: 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPD--QYSTELGQR 392
IG V + + L ++ V + IY+ A + +L + L
Sbjct: 96 IGVVFGQKT----QLWWDLPVIDSFYLLAAIYDLPP-ARFKKRLDELSELLDLEELLDTP 150
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--AMQGRTVILI 450
QLS GQ+ R IA A++ P IL LDE T LD +++ ++ L+ +G TV+L
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 451 AHRMSTI 457
+H M I
Sbjct: 211 SHYMKDI 217
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 46/234 (19%), Positives = 92/234 (39%), Gaps = 67/234 (28%)
Query: 896 PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGI 952
R ++ +L +FS ++PG V ++G G+G S++L L + N EG I +G
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 953 KEYNLRRLRSQIGLVQQE----PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS 1008
KE + +I V +E P L + E ++ + + ++F+
Sbjct: 75 KE-FAEKYPGEIIYVSEEDVHFPTL----------------TVRETLDFALRCKGNEFVR 117
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
+ SGG+++R++IA L+ R +++ D +T LD
Sbjct: 118 GI---------------SGGERKRVSIAEALVSRASVLCWDNSTRGLD------------ 150
Query: 1069 ALNPKSSSCGELASRTTQITVAHRLATVINS-----------DVIVVMDKGEVV 1111
SS+ E+ + + T ++ D ++V+ +G +
Sbjct: 151 -----SSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 9e-12
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 24/215 (11%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL------- 331
S + G+++ +VG SG GKST++ +A P +G + +L+L L
Sbjct: 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82
Query: 332 --RKNIGAVSQEPSLFTGSLMD-----NIKVGNMDADDEQIYNASMMANAHSFISQLP-D 383
R G V Q P G M NI M N + A A ++ ++ D
Sbjct: 83 LMRTEWGFVHQNPR--DGLRMRVSAGANIGERLMAIGARHYGN--IRATAQDWLEEVEID 138
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
T + SGG +QR+ IAR +V P ++ +DE T LD + + + L ++
Sbjct: 139 P--TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 444 --GRTVILIAHRMSTI-VNADMIAVVEDGQVTETG 475
G VI++ H + + A + V++ G+V E+G
Sbjct: 197 DLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 69/268 (25%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL--LRFYDPNEGIILIDGKGIKEYNLR 958
VL N S IE G + ++G SGAGKS ++ +L + Y+P G I+ Y++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII--------YHVA 64
Query: 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN---------------- 1002
+ + + C + C G E + +S K
Sbjct: 65 LCEKCGYVERPSKVGEPCPV----CGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 1003 -------IHDFISSLPD-GYDTVVGEKGCQ---------------------LSGGQKQRI 1033
+ + + +L + GY+ G++ LSGG+KQR+
Sbjct: 121 LYGDDTVLDNVLEALEEIGYE---GKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093
+AR L K P + L DE T LD ++ +++ +ALE S L S ++ +
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-----I 232
Query: 1094 ATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
+ SD + ++ GE+ E G+ +VA
Sbjct: 233 EDL--SDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-DLKSL 331
L + +L + ++V+L+G +G GK+TV + + FY P+ G IL+ +I+ L +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMA-------------NAHSF 377
R + Q LF ++++N+ V A +Q+ + + A
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLV----AQHQQL-KTGLFSGLLKTPAFRRAESEALDR 133
Query: 378 ISQLPDQYS-TELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
+ ++ E R L+ GQ++R+ IAR +V P IL+LDE + L+ + K +
Sbjct: 134 AATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELD 193
Query: 436 EALE--RAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
E + R TV+LI H M ++ +D I VV G GT
Sbjct: 194 ELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
Length = 255 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 63/230 (27%)
Query: 275 LKGFSLSIPAG-----KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI------ 323
L F+L + G +++ ++G +G GK+T I ++A P GDI I+ +
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQY 69
Query: 324 ---------KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+DL L S+ K+ F + +++ EQI +
Sbjct: 70 IKADYEGTVRDL-LSSITKDFYTHPY----FKTEIAKPLQI-------EQILD------- 110
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
++P+ LSGG+ QR+AIA + K+ I LLDE ++ LD E +
Sbjct: 111 ----REVPE------------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154
Query: 435 QEALER-AMQG-RTVILIAHRMSTIVNADMIA---VVEDGQVTETGTHHS 479
+ + R A +T ++ H I+ D +A +V +G+ + G +
Sbjct: 155 SKVIRRFAENNEKTAFVVEH---DIIMIDYLADRLIVFEGEPSVNGVANP 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 46/235 (19%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I D F YP P L+ K + I +A+VG +G GKST++ L++ PS+G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+S + + SQ V +D + + ++
Sbjct: 567 F-----------RSAKVRMAVFSQH------------HVDGLD-----LSSNPLLYMMRC 598
Query: 377 FISQLPDQYSTELGQRGVQ----------LSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
F + LG GV LSGGQK R+A A+ K P ILLLDE ++ L
Sbjct: 599 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658
Query: 427 DSES-EKLVQEALERAMQGRTVILIAHRMSTIVNA-DMIAVVEDGQVTE-TGTHH 478
D ++ E L+Q + QG V++++H I + D + VV +G+VT GT H
Sbjct: 659 DLDAVEALIQGLV--LFQG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH 710
|
Length = 718 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 1e-11
Identities = 64/239 (26%), Positives = 110/239 (46%), Gaps = 42/239 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + DV + R L+ S ++P G + ALVG +G GKST+ + F ++G I
Sbjct: 7 IVVNDVTVTW--RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 317 LIDSLNIKDLDLKSLRKNIGAV---SQE-----PSLFTGSLMDNIKVGNM------DADD 362
I + ++L+KN+ A S+E P L +M + G+M D
Sbjct: 65 SILGQPTR----QALQKNLVAYVPQSEEVDWSFPVLVEDVVMMG-RYGHMGWLRRAKKRD 119
Query: 363 EQIYNAS-----MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417
QI A+ M+ H I +LSGGQK+R+ +ARAI + ++
Sbjct: 120 RQIVTAALARVDMVEFRHRQIG---------------ELSGGQKKRVFLARAIAQQGQVI 164
Query: 418 LLDEATSALDSESE-KLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475
LLDE + +D ++E +++ E +G+T+++ H + ++ V+ G V +G
Sbjct: 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-11
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 60/226 (26%)
Query: 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324
P P + ILK SLS G + ++G +G GKST++ ++A NG+ + IK
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP-APGIK 69
Query: 325 DLDLKSLRKNIGAVSQEPSL-----FTGSLMD---------------NIKVGNMDAD--- 361
+G + QEP L ++ + + K DAD
Sbjct: 70 ----------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDA 119
Query: 362 --DEQ--IYNASMMANAHSFISQL-----------PDQYSTELGQRGVQLSGGQKQRIAI 406
EQ + A+A +L D T+L SGG+++R+A+
Sbjct: 120 LLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL-------SGGERRRVAL 172
Query: 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAH 452
R ++ P +LLLDE T+ LD+ES +++ L+ G TV+ + H
Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-YPG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 73/240 (30%), Positives = 112/240 (46%), Gaps = 33/240 (13%)
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGI------KEYNL 957
+N SL IE G L+G SG+GKS++L + + G +L+ DG G L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 958 RRLRS-QIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD 1015
RRLR+ ++ +V QQ LL ++ N+ +G E + E K+ + + L D
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPK-AERRKRVDEQLELVGLAQWAD 159
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL--EALNPK 1073
GE LSGG +QR+ +AR I+L+DE SALD +I + L E L
Sbjct: 160 RKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDP----LIRTQLQDELL--- 208
Query: 1074 SSSCGELASR--TTQITVAHRL--ATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
EL S+ T + V+H L A I + I +M+ G +++ G+ +V Y
Sbjct: 209 -----ELQSKLKKTIVFVSHDLDEALKIGNR-IAIMEGGRIIQHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 70/222 (31%), Positives = 98/222 (44%), Gaps = 35/222 (15%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-----RK 333
S S+ G++V +VG SG GKS V SL G ++ + L DL+ + R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKS-VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85
Query: 334 NIGA----------VSQEPSLFTG-SLMDNIKV---GNMDADDEQIYNASMMANAHSFIS 379
+GA S P G +M+ IKV GN + A ++
Sbjct: 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGN---------KKTRRQRAIDLLN 136
Query: 380 Q--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
Q +PD S L QLSGG QR+ IA AI P +L+ DE T+ALD + + E
Sbjct: 137 QVGIPDPAS-RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL 195
Query: 438 LERAMQGR--TVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
L Q ++LI H ++ + A I V+ GQV ETG
Sbjct: 196 LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237
|
Length = 326 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL--- 331
L S S+ G++ L+G +G GK+T++ ++ P G++L D D DL L
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTKLPEH 76
Query: 332 ---RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS- 386
R IG Q+P++F ++ +N+++ N A F ++
Sbjct: 77 RIARAGIGRKFQKPTVFENLTVRENLELAL---------NRDKSVFASLFARLRAEERRR 127
Query: 387 -------TELG-QRGVQ---LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
LG +R LS GQKQ + I + ++P +LLLDE + + +
Sbjct: 128 IDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 436 EALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
E L+ +++++ H M + AD + V+ +G V G+
Sbjct: 188 ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-11
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 27/203 (13%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN--GDILIDSLNIKDLDL 328
++ IL G + G+++A++G SG GKST+++ +A +N G IL ++
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT---- 135
Query: 329 KSLRKNIGAVSQEPSLF-------TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL 381
K + K G V+Q+ L+ T +++ E+I A S IS+L
Sbjct: 136 KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKI------LVAESVISEL 189
Query: 382 --PDQYSTELGQ---RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE-KLVQ 435
+T +G RG+ SGG+++R++IA ++ NP +L+LDE TS LD+ + +LV
Sbjct: 190 GLTKCENTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
Query: 436 EALERAMQGRTVILIAHRMSTIV 458
A +G+T++ H+ S+ V
Sbjct: 248 TLGSLAQKGKTIVTSMHQPSSRV 270
|
Length = 659 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 57/214 (26%), Positives = 108/214 (50%), Gaps = 16/214 (7%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRK 333
L SL I G++V L+G++G GK+T++ + ++G I+ D +I D K +R+
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
+ V + +F+ ++ +N+ +G A+ +Q + + +L ++ QR
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQF--QERIKWVYELFPRLHERRI----QR 134
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ----GRTVI 448
+SGG++Q +AI RA++ P +LLLDE + L + ++Q+ + Q G T+
Sbjct: 135 AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTIF 191
Query: 449 LIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
L+ + + AD V+E+G V T +LL
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 30/220 (13%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
++N S ++ PG L+GP+GAGK++ ++L +P EG I +G + + ++
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIK 71
Query: 962 SQIGLVQQEPLLF-SCSIRNNICYGNEAA--SEAEIVEVSKKANIHDFISSLPDGYDTVV 1018
++IG + +E L+ ++ + + Y E +AEI + + ++ L +V
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI-----QKKLQAWLERL-----EIV 121
Query: 1019 GEKGC---QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
G+K +LS G +Q+I ++ P +++LDE S LD + ++ A+ L
Sbjct: 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK---- 177
Query: 1076 SCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
T I +HR+ V D ++++ KG+ V G
Sbjct: 178 -----EEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 53/229 (23%), Positives = 88/229 (38%), Gaps = 61/229 (26%)
Query: 264 FAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKST---VISLVARFYDPSNGDILIDS 320
R ILK FS + G+MV ++G G G ST ++ GDI +
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 321 LNIKDLDLKSLRKNIGAVSQE----PSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376
+ K+ + I VS+E P+L +D ++ +
Sbjct: 72 IPYKE-FAEKYPGEIIYVSEEDVHFPTLTVRETLD----------------FALRCKGNE 114
Query: 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436
F+ RG+ SGG+++R++IA A+V +L D +T LDS +
Sbjct: 115 FV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ 153
Query: 437 ALERAMQGRTVILIAH--RMSTIVNA-----------DMIAVVEDGQVT 472
ALE RT +A + +T V+ D + V+ +G+
Sbjct: 154 ALEILKCIRT---MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 5e-11
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 35/248 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFS-----LQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
+E +N++F Y N F L I+ G V L+G +G+GKS++ LL Y P
Sbjct: 323 LELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA--EIVEVS 998
G IL+DGK + L R V + LF + + E + +E++
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFD-QLLGPEGKASPQLIEKWLQRLELA 434
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
K +++D S LS GQK+R+A+ LL+ I++LDE + D
Sbjct: 435 HKTSLNDGRFSNLK------------LSTGQKKRLALLLALLEERDILVLDEWAADQDPA 482
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118
R + L P G+ T ++H I++D ++ M G++ E+
Sbjct: 483 FRREF---YQVLLPLLKEQGK-----TIFAISHDDHYFIHADRLLEMRNGQLSELTGEER 534
Query: 1119 LVAESQGV 1126
V
Sbjct: 535 DETARDAV 542
|
Length = 546 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 45/233 (19%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK----GIKEYNLRR 959
LN+ S ++PG L+GP+GAGK++++ ++ P EG +L DG + E+ + R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 960 LRSQIGLVQQEPLLF-SCSIRNNI--------------CYGNEAASEAEIVEVSKKANIH 1004
IG Q+P +F + ++R N+ A I E+
Sbjct: 81 A--GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLA----- 133
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL-DAESERVI 1063
L D D + LS GQKQ + I L + P ++LLDE + + DAE+E+
Sbjct: 134 --TIGLGDERDRLAAL----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
E L LA + + + V H + V +D + V+ +G V+ GS
Sbjct: 188 ----ELLK-------SLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 49/211 (23%), Positives = 101/211 (47%), Gaps = 12/211 (5%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-LKSLRK 333
L SL + G++ ++G +G GK+T++ ++ P G +L ++ L + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG-- 390
IG Q+P++F ++ +N+++ D+ ++ AS+ + ++ +G
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELAL--PRDKSVF-ASLFFRLSAEEKDRIEEVLETIGLA 134
Query: 391 -QRGVQ---LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
+ LS GQKQ + I ++++P +LLLDE + + E + E L+ +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 447 VILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
V+++ H M + + AD + V+ G V G+
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-11
Identities = 64/239 (26%), Positives = 105/239 (43%), Gaps = 26/239 (10%)
Query: 893 FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952
F Y P VL +L LVG +G GKS++ L P +G +L GK +
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 953 --KEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSKKANIHDF 1006
+ L LR Q+ V Q+P +F I ++I + N EAEI +A
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEA----- 120
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
+L D C LS GQK+R+AIA L+ + +LLDE T+ LD +++
Sbjct: 121 -LTLVDAQHFRHQPIQC-LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQ 1124
+ + +A I +H + + SD + V+ +G+++ G+ + A ++
Sbjct: 179 IRRI---------VAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTE 228
|
Length = 271 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 6e-11
Identities = 51/192 (26%), Positives = 79/192 (41%), Gaps = 47/192 (24%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L+ +SIP +V + G SG GKST+++ + L S K + L K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN-----------EGLYASG--KARLISFLPKF 57
Query: 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGV 394
S+ +F L I VG + L LGQ+
Sbjct: 58 ----SRNKLIFIDQLQFLIDVG---------------------LGYLT------LGQKLS 86
Query: 395 QLSGGQKQRIAIARAIVKNPP--ILLLDEATSALD-SESEKLVQEALERAMQGRTVILIA 451
LSGG+ QR+ +A + PP + +LDE ++ L + +L++ G TVILI
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 452 HRMSTIVNADMI 463
H + + +AD I
Sbjct: 147 HNLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-11
Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 37/234 (15%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNL 957
+ +L +L ++ G A++GP+G+GKS++ + Y+ G IL G+ + E
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 958 -RRLRSQIGLVQQEP--------LLFSCSIRNNICYGNEAASEAEI------VEVSKKAN 1002
R R+ + L Q P L F +R+ + A E + + K
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEF---LRSALNARRSARGEEPLDLLDFLKLLKAKLA 128
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
+ + V E SGG+K+R I + L P + +LDE S LD ++ ++
Sbjct: 129 LLGMDEEFLNRS---VNEG---FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKI 182
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMG 1114
+ + L S + + H RL I D + V+ G +V+ G
Sbjct: 183 VAEGINRLREPDRSF---------LIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 21/180 (11%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
E T L S ++ G + LVGP+GAGKS++LA + G I G+ ++ ++
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATE 69
Query: 960 L-RSQIGLVQQEPLLFSCSIRNNICYGNEAASEA-EIVEVSKKANIHDFISSLPDGYDTV 1017
L R + L QQ+ F+ + + + + + +V+ + D
Sbjct: 70 LARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------K 118
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLK-----RPA--IMLLDEATSALDAESERVIVSALEAL 1070
+G QLSGG+ QR+ +A +L+ PA ++LLDE ++LD + + L AL
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
|
Length = 248 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 8e-11
Identities = 107/528 (20%), Positives = 194/528 (36%), Gaps = 41/528 (7%)
Query: 561 RELLRLVVGTVAA-AFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA-FSLVGL--F 616
E+L L+ A I+ L G I +A + +E + FS GL
Sbjct: 6 GEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLL 65
Query: 617 SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEK--PQNDAGSLTSRI--VSD 672
+L F G + NLR L +L I ++ N LT I ++
Sbjct: 66 ALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINA 125
Query: 673 TSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQG 732
+ I+ +++ CI+ + ++ + ++ A F+GG +A+
Sbjct: 126 FLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAAR- 184
Query: 733 FSGDSAAAHTEFISLTSESASNIRT--VASFCHEENILQKAKISLEKTKRSSRKESIKYG 790
D A E + A ++ + +Q++ ++ + +
Sbjct: 185 ---DEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI---LIFI 238
Query: 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVI 850
+ F L+ + AL+ A+ A + A + + P + L + +P +
Sbjct: 239 AAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLA--LLYIKGP-LEMLVSALPILA 295
Query: 851 SAITVLAPAFEILDRKTEIEPDAPESSESGRIK--------GRIEFQNIKFNYPSRPEVT 902
A + +R E EP+ E S++ + IE +++ N + PE +
Sbjct: 296 QAQIACQRLADFGERFNEPEPE-LELSDADNVLLLAHDKSVDSIELKDVHMNPKA-PEGS 353
Query: 903 ---VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
L L+I G V +VG +G GKS++ L Y P EG IL+DG + +
Sbjct: 354 EGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413
Query: 960 LRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVG 1019
R + + LF I + E AS + ++ I D + G+ T
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPD---EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTA 470
Query: 1020 EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
LS GQ++R+A+ L+ I+L DE + D +R L
Sbjct: 471 -----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-11
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 61/243 (25%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKS-SVLALLLRFYDPNEGIILIDGKGIKE---YNLRR 959
++ S ++ G V +VG SG+GKS S LA++ G+I G+ + E +N +
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIM--------GLIDYPGRVMAEKLEFNGQD 74
Query: 960 LR------------SQIGLVQQEPLLFSCSIRNNICY---------------GNEAASEA 992
L+ +++ ++ Q+P+ S+ N CY GN+
Sbjct: 75 LQRISEKERRNLVGAEVAMIFQDPM---TSL--NPCYTVGFQIMEAIKVHQGGNKKTRRQ 129
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
+++ + I D S L D Y QLSGG QR+ IA + RP +++ DE T
Sbjct: 130 RAIDLLNQVGIPDPASRL-DVYPH-------QLSGGMSQRVMIAMAIACRPKLLIADEPT 181
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVV 1111
+ALD + I+ L L K + + + H LA V + I+VM G+VV
Sbjct: 182 TALDVTIQAQIIELLLELQQKEN--------MALVLITHDLALVAEAAHKIIVMYAGQVV 233
Query: 1112 EMG 1114
E G
Sbjct: 234 ETG 236
|
Length = 326 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 8e-11
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 39/170 (22%)
Query: 907 FSLQIEPGLKVALVGPSGAGKSSVLA----LLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
S ++ G + LVGP+GAGKS++LA LL P G I G+ ++ ++ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 963 QIG-LVQQEPLLFSCSIRNNICY--------GNEAASEAEIVEVSKKANIHDFISSLPDG 1013
L QQ+ F+ + Y A + + EV++ + D +
Sbjct: 70 HRAYLSQQQTPPFAMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGLDDKLG----- 121
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLK-RPAI------MLLDEATSALD 1056
V QLSGG+ QR+ +A +L+ P I +LLDE ++LD
Sbjct: 122 --RSVN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
|
Length = 248 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 51/219 (23%), Positives = 99/219 (45%), Gaps = 25/219 (11%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID------SLNIKDLDL 328
+K S + AG++V + G +G G+S ++ ++ P++G IL++ L+ ++
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333
Query: 329 KSL------RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQ----IYNASMMANAHSFI 378
L R G V SL +N+ +G D + ++ A I
Sbjct: 334 LGLAYVPEDRHGHGLVLDL------SLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI 387
Query: 379 SQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+ D + LSGG +Q++ +AR + + P +L+ + T LD + + + E L
Sbjct: 388 EEF-DVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 439 -ERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
E G+ V+LI+ + I+ +D IAV+ +G++
Sbjct: 447 LELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 33/240 (13%)
Query: 257 IDIRDVCFAYPSRPDQLILKGF---SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
+ + + Y KG S + G+++ +VG SG GK+T++ ++ P
Sbjct: 7 LSVSGLSKLYGPG------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60
Query: 314 GDILIDSLNIKDLDLKSL---------RKNIGAVSQEPSLFTGSLMD-----NIKVGNMD 359
G + + + DL ++ R G V Q P G M NI M
Sbjct: 61 GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR--DGLRMQVSAGGNIGERLMA 118
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
N + A A ++ ++ + + SGG +QR+ IAR +V P ++ +
Sbjct: 119 IGARHYGN--IRAEAQDWLEEV-EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175
Query: 420 DEATSALD-SESEKLVQ--EALERAMQGRTVILIAHRMSTI-VNADMIAVVEDGQVTETG 475
DE T LD S +L+ L R + G V+++ H ++ + AD + V++ GQV E+G
Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVREL-GLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 1e-10
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ Y + +L + SL I PG ++ LVG +GAGKS++L L+ +P+EGI+
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 946 LIDGK 950
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 34/215 (15%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+F+NI P+ ++ + S ++ G + + GP+G GKSS+ +L + G
Sbjct: 451 GIKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGR 508
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN-------EAASEAEIVEV 997
+ KG ++ V Q P + ++R+ I Y + S+ ++ ++
Sbjct: 509 LTKPAKG-----------KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQI 557
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
+ + G+ V LSGG+KQRIA+AR +P +LDE TSA+
Sbjct: 558 LDNVQLTHILER-EGGWSAVQDWMD-VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
+ E + T +V+HR
Sbjct: 616 DVEGYMYRLCREFG------------ITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 896 PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955
EV L S IE G V +GP+GAGK++ L +L P G + + G +
Sbjct: 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL-VPWK 87
Query: 956 NLRRLRSQIGLV--QQEPLLFSCSIRNNI-----CYGNEAASEAEIV-EVSKKANIHDFI 1007
++ +IG+V Q+ L + + ++ Y A + + E+S+ ++ + +
Sbjct: 88 RRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL 147
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
DT V QLS GQ+ R IA LL P I+ LDE T LD ++ I + L
Sbjct: 148 -------DTPVR----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 1068 EALN 1071
+ N
Sbjct: 197 KEYN 200
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-10
Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L G +L++ G+++ALVG +G GKST++ ++ Y G I K++ + +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI---LYLGKEVTFNGPKSS 76
Query: 335 ----IGAVSQEPSLFTG-SLMDNI--------KVGNMDADDEQIYNASMMANAHSFISQL 381
IG + QE +L ++ +NI + G +D M A A +++L
Sbjct: 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKK-------MYAEADKLLARL 129
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQEALER 440
++S++ + +LS G++Q + IA+ + ++++DE T AL D+E+E L + E
Sbjct: 130 NLRFSSD--KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL 187
Query: 441 AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470
QGR ++ I+HR+ I D + V DGQ
Sbjct: 188 KSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 48/159 (30%), Positives = 72/159 (45%), Gaps = 30/159 (18%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
+L SL + GK++ L+G +G GKST++ +V P G I + LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 334 NIGAVSQ----EPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388
IG V Q + +L T + ++ G D I A A I P Q
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED---ILPALKRVQAGHLIDA-PMQ---- 119
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
+LSGG+ QR+ +ARA++ P +L+LDE T +D
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-10
Identities = 63/211 (29%), Positives = 98/211 (46%), Gaps = 30/211 (14%)
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS----LRKNI 335
L + + AL+G +G GKST++ + Y +G IL K++D KS L I
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFKSSKEALENGI 75
Query: 336 GAVSQEPSLFTG-SLMDNIKVGN-----MDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
V QE +L S+MDN+ +G M D +++Y + I P
Sbjct: 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRA----- 130
Query: 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE-----KLVQEALERAMQG 444
+ LS Q Q I IA+A N I+++DE TS+L +E E ++++ ER G
Sbjct: 131 --KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIRKLKER---G 184
Query: 445 RTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474
++ I+H+M I D I ++ DGQ T
Sbjct: 185 CGIVYISHKMEEIFQLCDEITILRDGQWIAT 215
|
Length = 491 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-10
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 46/229 (20%)
Query: 898 RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--------YDPNEGIILIDG 949
E VL N +L+I+PG VA+VG SGAGK+++L ++L Y P+ G + +
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452
Query: 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD---F 1006
+ + G V L S + G+ A+ VE+ +A + D +
Sbjct: 453 NTVSALIPGEYEPEFGEVTILEHLRSKT-------GDLNAA----VEILNRAGLSDAVLY 501
Query: 1007 ISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSA 1066
+ LS GQK+R +A+ L +RP ++L+DE + LD + +
Sbjct: 502 RRKFSE------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549
Query: 1067 LEALNPKSSSCGELASRTTQITVAHRLATVINS---DVIVVMDKGEVVE 1112
+ L ++ T I V HR V N+ D ++++ G+V
Sbjct: 550 ISELAREAGI--------TLIVVTHR-PEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 67/260 (25%), Positives = 105/260 (40%), Gaps = 68/260 (26%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVI------SLVARFY----DPSNGDIL-----ID 319
LK + IP G + + G SG GKS++I +L R + P N D + ID
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 320 SLNIKDLDL--KSLRKNIGAVSQEPSLFTGSLMDNIK----------------------- 354
+ + D ++ R N P+ +TG + D I+
Sbjct: 71 KVIVIDQSPIGRTPRSN-------PATYTG-VFDEIRELFCEVCKGKRYNRETLEVRYKG 122
Query: 355 -----VGNMDADDEQIYNASMMANAHSFISQLPD---QYSTELGQRGVQLSGGQKQRIAI 406
V +M ++ + ++ + L D Y LGQ LSGG+ QRI +
Sbjct: 123 KSIADVLDMTVEEALEFFENI-PKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRIKL 180
Query: 407 ARAIVK---NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADM 462
A+ + K + +LDE T+ L K + E L+R + +G TV++I H + I AD
Sbjct: 181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADW 240
Query: 463 I------AVVEDGQVTETGT 476
I GQV +GT
Sbjct: 241 IIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 22/229 (9%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S + AG+++ LVG +G GKST+++ +A +G I ++ L ++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNA-SMMANAHSFISQLPDQYSTELGQRG 393
+SQ+ + M + D+ + +A A + +L +
Sbjct: 74 RAYLSQQQT--PPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTN------- 124
Query: 394 VQLSGGQKQRIAIARAIVK-----NPP--ILLLDEATSALDSESEKLVQEALER-AMQGR 445
QLSGG+ QR+ +A +++ NP +LLLDE ++LD + + L QG
Sbjct: 125 -QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 446 TVILIAHRMS-TIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTM 493
+++ +H ++ T+ +A +++ G++ +G +L T + + M
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL-TPPVLAQAYGM 231
|
Length = 248 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNLRRL 960
LN+ SL ++PG ++GP+GAGK++++ ++ P+EG +L G G+ E+ +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEH--QIA 75
Query: 961 RSQIG-----------LVQQEPLLFSC----SIRNNICYGNEAASEAEIVEVSKKANIHD 1005
R+ IG L E L + S+ ++ + A + I EV + + D
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL-DAESER 1061
D + G LS GQKQ + I L++ P ++LLDE + + D E+E+
Sbjct: 136 EA-------DRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEK 181
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-10
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 40/206 (19%)
Query: 887 EFQNIKFNYPSRPEVTV-LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP---NE 942
++N+ + + E V LNN ++PG AL+G SGAGK+++L +L
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQ-----------EPLLFSCSIRNNICYGNEAASE 991
G L++G+ + R IG VQQ E L FS +R
Sbjct: 821 GDRLVNGRPLDSSFQRS----IGYVQQQDLHLPTSTVRESLRFSAYLR------------ 864
Query: 992 AEIVEVSKKANIHDFISS------LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045
+ VSK +++ + D VVG G L+ Q++R+ I L+ +P +
Sbjct: 865 -QPKSVSKSEK-MEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL 922
Query: 1046 ML-LDEATSALDAESERVIVSALEAL 1070
+L LDE TS LD+++ I + L
Sbjct: 923 LLFLDEPTSGLDSQTAWSICKLMRKL 948
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-10
Identities = 49/173 (28%), Positives = 88/173 (50%), Gaps = 20/173 (11%)
Query: 292 GSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTGS 348
G++GCGKS+++ ++A PS+G+I + NI ++ + N+G + E ++F
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG-LKLEMTVF--- 88
Query: 349 LMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408
+N+K + +IYN++ A +L D L ++ LS G ++ +AIAR
Sbjct: 89 --ENLKFWS------EIYNSAETLYAAIHYFKLHDL----LDEKCYSLSSGMQKIVAIAR 136
Query: 409 AIVKNPPILLLDEATSALDSESEKLVQEALE-RAMQGRTVILIAHRMSTIVNA 460
I + LLDE + L E+ L+ + +A G V+L +H S+I +A
Sbjct: 137 LIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189
|
Length = 195 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 67/254 (26%), Positives = 103/254 (40%), Gaps = 48/254 (18%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN--- 941
+IE +NI ++P V + SL ++ G +ALVG SG+GKS A L
Sbjct: 4 QIELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ 59
Query: 942 -EGIILIDGKGIKEYNLR-RLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEA 992
G +L+DGK + LR R I + Q P + + E A +A
Sbjct: 60 TAGRVLLDGKPVAPCALRGRK---IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDA 116
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
+ + + + V+ ++SGG QR+ IA LL ++ DE T
Sbjct: 117 TLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168
Query: 1053 SALDAESERVIVSALEALNPKSSSCGELASR-------TTQITVAHRLATVINSDVIVVM 1105
+ LD ++ I+ LE++ + R T + V RLA D + VM
Sbjct: 169 TDLDVVAQARILDLLESI---------VQKRALGMLLVTHDMGVVARLA-----DDVAVM 214
Query: 1106 DKGEVVEMGSHSTL 1119
G +VE G TL
Sbjct: 215 SHGRIVEQGDVETL 228
|
Length = 254 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 20/219 (9%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331
Q L S G++V +G +G GKST + ++ + P +G + + ++ + K +
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEV 73
Query: 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ 391
++NIG + + L+ +M + + A + + Q ++ +G
Sbjct: 74 QRNIGYLPEHNPLYL----------DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGL 123
Query: 392 RGVQ------LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
R Q LS G +QR+ +A+A++ +P +L+LDE T+ LD ++ ++ + +
Sbjct: 124 RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDK 183
Query: 446 TVILIAHRMSTIVNA--DMIAVVEDGQVTETGTHHSLLQ 482
T+IL H M V A D + ++ G++ L
Sbjct: 184 TIILSTHIMQE-VEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 34/200 (17%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
F I +P V L++ S G AL+G +GAGKS++L +L Y P+ G IL
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 947 IDGKGIKEYNLRR-LRSQIGLVQQE----PLLFSCSIRNNICYG---------NEAASEA 992
IDG+ ++ + L + + ++ QE P + ++ N+ G N
Sbjct: 63 IDGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNY 119
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
E E + + D P Y LS GQ+Q + IA+ L + ++ DE T
Sbjct: 120 EAREQLEHLGV-DIDPDTPLKY----------LSIGQRQMVEIAKALARNARVIAFDEPT 168
Query: 1053 SALDA-ESERV--IVSALEA 1069
S+L A E E++ ++ L A
Sbjct: 169 SSLSAREIEQLFRVIRELRA 188
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-09
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
S P V L+N +L++ P AL+G +GAGKS++L L Y + G IL GK I +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 957 LRR-LRSQIGLVQQE-PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGY 1014
+ L + I +V QE L+ S+ +N+ G ++ V+ K ++ ++ D
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLG-RYPTKGMFVDQDK---MYRDTKAIFDEL 122
Query: 1015 DTVVG--EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
D + K LS Q Q I IA+ I+++DE TS+L
Sbjct: 123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 70/251 (27%)
Query: 901 VTVLN--NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII----LIDGKGI-- 952
VT +N NFSL+ G + +VG SG+GKS L+ N G I +G+ I
Sbjct: 29 VTAVNDLNFSLR--AGETLGIVGESGSGKSQTAFALMGLLAAN-GRIGGSATFNGREILN 85
Query: 953 -KEYNLRRLRS-QIGLVQQEPL------------LFSCSIRNNICYGNEAASEA------ 992
E L +LR+ QI ++ Q+P+ L + + EA E+
Sbjct: 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA 145
Query: 993 -EIVEVSKKANI--HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
++ E K+ + H+F SGG +QR+ IA LL RP +++ D
Sbjct: 146 VKMPEARKRMKMYPHEF-------------------SGGMRQRVMIAMALLCRPKLLIAD 186
Query: 1050 EATSALDAESERVIVSA--LEALNPKSSSCGELASR--TTQITVAHRLATVINS-DVIVV 1104
E T+ALD V V A + LN EL T I + H L V D ++V
Sbjct: 187 EPTTALD-----VTVQAQIMTLLN-------ELKREFNTAIIMITHDLGVVAGICDKVLV 234
Query: 1105 MDKGEVVEMGS 1115
M G +E G+
Sbjct: 235 MYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 3e-09
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 893 FNYPSRPEVTVLN--NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950
F RP V LN + QI A +G +GAGK++ L++L P G +L+ GK
Sbjct: 938 FEPSGRPAVDRLNITFYENQI-----TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGK 992
Query: 951 GIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNIC-YGNEAASEAEIVEVSKKANIHDFIS 1008
I E NL +R +G+ Q +LF ++ +I Y E ++ +A + D
Sbjct: 993 DI-ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED--- 1048
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
G E+ LSGG ++++++A + +++LDE TS +D S R I
Sbjct: 1049 ---TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-09
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 844 TLIPTVISAITVLAPAFEIL-DRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVT 902
+L+ + I A+ L ++ D + E P+ I I F + F YP P
Sbjct: 469 SLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGYPGGP--L 523
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
+ N + I+ ++A+VGP+G GKS++L L+ P+ G + R +
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF-----------RSAKV 572
Query: 963 QIGLVQQE----------PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPD 1012
++ + Q PLL+ C+ + E +A++ F
Sbjct: 573 RMAVFSQHHVDGLDLSSNPLLYMMR-----CFPG-------VPEQKLRAHLGSF------ 614
Query: 1013 GYDTVVGEKGCQ----LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
V G Q LSGGQK R+A A+ K+P I+LLDE ++ LD + A+E
Sbjct: 615 ---GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-------LDAVE 664
Query: 1069 AL 1070
AL
Sbjct: 665 AL 666
|
Length = 718 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-09
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
V VL + G AL+G +GAGKS+++ ++ P+ G + I G L
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN--PCARLTPA 81
Query: 961 RSQ---IGLVQQEPLLF-SCSIRNNICYG--NEAASEAEIVEVSKKANIH---DFISSLP 1011
++ I LV QEPLLF + S++ NI +G AS ++ ++ D +
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSL 141
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD-AESER 1061
+ D +Q + I R L++ I++LDE T++L AE+ER
Sbjct: 142 EVAD--------------RQIVEILRGLMRDSRILILDEPTASLTPAETER 178
|
Length = 510 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 56/216 (25%)
Query: 278 FSLSIPA-GKMVALVGSSGCGKSTVISLVA--------RFYDPSNGDILIDSL------- 321
L +P G+++ LVG +G GKST + ++A +F DP + D ++D
Sbjct: 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77
Query: 322 ---NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
+ + D+K + K V P G + + +K DE+
Sbjct: 78 YFTKLLEGDVKVIVK-PQYVDLIPKAVKGKVGELLK-----KKDER----------GKL- 120
Query: 379 SQLPDQYSTELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDS---- 428
D+ +L R V QLSGG+ QR+AIA A+ ++ DE +S LD
Sbjct: 121 ----DELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRL 176
Query: 429 ESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIA 464
+ +L++E E V+++ H ++ + D ++
Sbjct: 177 NAARLIRELAE---DDNYVLVVEHDLAVL---DYLS 206
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 54/235 (22%)
Query: 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID--SLN 322
A+ S D +L L I + V LVG +G GKST++ ++ G++L+D +
Sbjct: 9 AWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEVLLDDGRII 61
Query: 323 I-KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG---------------NMDADDEQIY 366
+DL + L+++ P G++ D + G ++ D
Sbjct: 62 YEQDLIVARLQQD------PPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEK 115
Query: 367 NASMMANA-----HSFISQLPDQYSTELGQRGV-------QLSGGQKQRIAIARAIVKNP 414
N + +A H + QL ++ + L Q G+ LSGG ++ A+ RA+V NP
Sbjct: 116 NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNP 175
Query: 415 PILLLDEATSALDSES-EKLVQEALERAMQGRTVILIAH------RMST-IVNAD 461
+LLLDE T+ LD E+ E L E + QG ++I I+H M+T IV+ D
Sbjct: 176 DVLLLDEPTNHLDIETIEWL--EGFLKTFQG-SIIFISHDRSFIRNMATRIVDLD 227
|
Length = 635 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 5e-09
Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
SR E V ++ G + + G +GAGK+++L +L G I IDGK +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 957 LRRLRSQIG--------LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS 1008
R + +G L E L F C + + A I
Sbjct: 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG--RRAKQMPGSALA------------IV 125
Query: 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
L DT+V QLS GQK+R+A+AR L + LLDE + LD E
Sbjct: 126 GLAGYEDTLVR----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 73/273 (26%)
Query: 257 IDIRDVCFAYPSRPDQLI--LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+DIR++ + + + + S+++ G++ LVG SG GKS + + N
Sbjct: 4 LDIRNLTIEFKT-SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNW 61
Query: 315 DILIDSLNIKDLDL---------KSLRKNIGAVSQEP------SLFTG-SLMDNI----- 353
+ D + D+DL K + N+ + QEP S G L+ NI
Sbjct: 62 RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTY 121
Query: 354 --------------------KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+VG D D +M S+ +L +
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVGIKDHKD-------IM---RSYPYELTE---------- 161
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIA 451
G+ Q++ IA A+ P +L+ DE T++++ ++ + L R Q T++LI+
Sbjct: 162 -----GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLIS 216
Query: 452 HRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
H + I AD I V+ GQ E+ L+
Sbjct: 217 HDLQMISQWADKINVLYCGQTVESAPSEELVTM 249
|
Length = 330 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-09
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 41/208 (19%)
Query: 865 RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGL-----KVAL 919
R EIE + + + ++ YP +F L++E G + +
Sbjct: 322 RPEEIEFEEKPPRDD-------KARDTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGI 372
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK-EYNLRRLRSQI-GLVQQEPLLFSCS 977
+GP+G GK++ + LL P+EG + +K Y + + G V+ L +
Sbjct: 373 LGPNGIGKTTFVKLLAGVIKPDEG----SEEDLKVSYKPQYISPDYDGTVED---LLRSA 425
Query: 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037
IR+ S E+ K N+ D + V E LSGG+ QR+AIA
Sbjct: 426 IRS------AFGSSYFKTEIVKPLNLEDL-------LERPVDE----LSGGELQRVAIAA 468
Query: 1038 TLLKRPAIMLLDEATSALDAESERVIVS 1065
L + + LLDE ++ LD E +R+IV+
Sbjct: 469 ALSREADLYLLDEPSAYLDVE-QRIIVA 495
|
Length = 591 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 904 LNNFSLQIEPGL-----KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958
L F+L++E G + ++GP+G GK++ + +L P+EG I I+ + Y +
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQ 68
Query: 959 RLRS-QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017
+++ G V+ LL S I + + + EI + + I D +P+
Sbjct: 69 YIKADYEGTVRD--LLSS--ITKD--FYTHPYFKTEIAKPLQIEQILD--REVPE----- 115
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
LSGG+ QR+AIA L K I LLDE ++ LD E +R++ S
Sbjct: 116 -------LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVE-QRLMAS 155
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 6e-09
Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 38/217 (17%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--------YDPSNGDILIDSLNI 323
+ +L+ +L I G +VA+VG SG GK+T++ ++ Y P +G + + +
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 324 KDLDLKSLRKNIGAVSQEPSLFTGSLMDNI--KVGNMDADDEQIYNASMMANAHSFISQL 381
L EP ++++++ K G+++A E I N + +++A + +
Sbjct: 456 SALIPGEY---------EPEFGEVTILEHLRSKTGDLNAAVE-ILNRAGLSDAVLYRRKF 505
Query: 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
+ LS GQK+R +A+ + + P +LL+DE + LD + V +
Sbjct: 506 SE------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553
Query: 442 MQ--GRTVILIAHRMSTIVNA---DMIAVVEDGQVTE 473
+ G T+I++ HR + NA D + +V G+V
Sbjct: 554 AREAGITLIVVTHR-PEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 39/220 (17%)
Query: 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
S + AG+++ LVG +G GKST+++ +A P +G I ++ L ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 338 VSQE-PSLFTGSLMDNIKVGNMD---------ADDEQIYNASMMAN--AHSFISQLPDQY 385
+SQ+ F M D + + N A + L D+
Sbjct: 74 LSQQQTPPF-----------AMPVFQYLTLHQPDKTRTEAVASALNEVAEAL--GLDDKL 120
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVK-----NP--PILLLDEATSALDSESEKLVQEAL 438
+ Q LSGG+ QR+ +A +++ NP +LLLDE ++LD + + L
Sbjct: 121 GRSVNQ----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176
Query: 439 ER-AMQGRTVILIAHRMS-TIVNADMIAVVEDGQVTETGT 476
QG V++ +H ++ T+ +AD + +++ G++ +G
Sbjct: 177 SELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
L+ S + + G V +GP+GAGKS+ + ++ + P+ G + + G+ + + N + ++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQR 75
Query: 963 QIG-LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021
IG L + PL +R Y A + K + + I + G +K
Sbjct: 76 NIGYLPEHNPLYLDMYVRE---YLQFIAGIYGMKGQLLKQRVEEMIELV--GLRPEQHKK 130
Query: 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
QLS G +QR+ +A+ L+ P +++LDE T+ LD
Sbjct: 131 IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 45/210 (21%)
Query: 865 RKTEIEPD--APESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPG-LK----V 917
R IE + P +E+ ++ +FSL++E G + +
Sbjct: 320 RPEPIEFEERPPRDESERETL--VEYPDLTKKL---------GDFSLEVEGGEIYEGEVI 368
Query: 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK-EYNLRRLRS-QIGLVQQEPLLFS 975
+VGP+G GK++ LL P+EG + + +K Y + ++ G V+ LL S
Sbjct: 369 GIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPDYDGTVED--LLRS 423
Query: 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035
I +++ S E+ K + D V + LSGG+ QR+AI
Sbjct: 424 --ITDDL------GSSYYKSEIIKPLQLERL-------LDKNVKD----LSGGELQRVAI 464
Query: 1036 ARTLLKRPAIMLLDEATSALDAESERVIVS 1065
A L + + LLDE ++ LD E +R+ V+
Sbjct: 465 AACLSRDADLYLLDEPSAHLDVE-QRLAVA 493
|
Length = 590 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
S V L + +L + PG AL+G +GAGKS+++ +L ++P +G I I+ YN
Sbjct: 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN---INYN 70
Query: 957 L--RRLRSQ--IGLVQQE-PLLFSCSIRNNICYGNEAASE---AEIV---EVSKKANIHD 1005
+L +Q IG++ QE ++ ++ N+ G + I+ E+ +A +
Sbjct: 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMML 130
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL-DAESE 1060
L D V LS KQ + IA+TL+ ++++DE TS+L + E +
Sbjct: 131 LRVGLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 46/248 (18%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVI-SLVARFYDPS-------NGDILID 319
+R + IL+ SL I G++ AL+G +G GKST++ +L GD+ ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 320 SLNIKDLDLKSL--RKNIGAVSQEPSLFTGSLMDNIKVGNMD----------ADDEQIYN 367
+ +D L + + + +P+ F S + + +G D E +
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQ 128
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK---------NPPILL 418
A +A A + +G+ LSGG+ R+ AR + + P LL
Sbjct: 129 ALALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177
Query: 419 LDEATSALD-SESEKLVQ--EALERAMQGRTVILIAHRMSTIV-NADMIAVVEDGQVTET 474
LDE T+ALD + +L+ L R V+ I H + +AD IA++ DG +
Sbjct: 178 LDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAIVAH 236
Query: 475 GTHHSLLQ 482
G +L
Sbjct: 237 GAPADVLT 244
|
Length = 272 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-08
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 72/232 (31%)
Query: 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324
P P + ILK SLS G + ++G +G GKST++ ++A G+ + IK
Sbjct: 15 VVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP-APGIK 71
Query: 325 DLDLKSLRKNIGAVSQEPSL-----FTGSLMD---------------NIKVGNMDAD--- 361
+G + QEP L ++ + DAD
Sbjct: 72 ----------VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDA 121
Query: 362 --DEQ-----IYNASMMANAHSFISQL-----------PDQYSTELGQRGVQLSGGQKQR 403
EQ I +A A+A SQL D T +LSGG+++R
Sbjct: 122 LAAEQGELQEIIDA---ADAWDLDSQLEIAMDALRCPPWDAKVT-------KLSGGERRR 171
Query: 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ---GRTVILIAH 452
+A+ R +++ P +LLLDE T+ LD+ES V LE+ + G TV+ + H
Sbjct: 172 VALCRLLLEKPDMLLLDEPTNHLDAES---V-AWLEQFLHDYPG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 26/232 (11%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVL-ALLLRFYDPNE-------GIILIDGKGIK 953
+L + SL+IEPG AL+G +GAGKS++L AL G + ++G+ +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 954 EYNLRRL-RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPD 1012
+ RL R + L Q F+ S R + G + + I +L
Sbjct: 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLK---------RPAIMLLDEATSALDAESERVI 1063
+VG LSGG+ R+ AR L + P +LLDE T+ALD + +
Sbjct: 135 A-TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRL 193
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
+ + L + + G LA +A R A D I ++ G +V G+
Sbjct: 194 LDTVRRLA-RDWNLGVLAI-VHDPNLAARHA-----DRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 30/174 (17%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959
+ +L++ L + PG ++ L+G +GAGKS+++ LL P G I + KGIK
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIK------ 376
Query: 960 LRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKA------NIHDFISSLPDG 1013
+G Q L F +R A E+ + +++ A + D++
Sbjct: 377 ----LGYFAQHQLEF---LR---------ADESPLQHLARLAPQELEQKLRDYLGGFGFQ 420
Query: 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
D V E + SGG+K R+ +A + +RP ++LLDE T+ LD + + + AL
Sbjct: 421 GDKVTEETR-RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 66/252 (26%), Positives = 100/252 (39%), Gaps = 76/252 (30%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTV---ISLVARFYDPSNGDILIDSLNIKDLDLKSL---- 331
S+++ G++ LVG SG GKS + I V + N + D + D+DL L
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTK----DNWRVTADRMRFDDIDLLRLSPRE 82
Query: 332 -RK----NIGAVSQEP-SLFTGS------LMDNI-------------------------K 354
RK N+ + QEP S S LM NI +
Sbjct: 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHR 142
Query: 355 VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414
VG D D M SF +L + G+ Q++ IA A+ P
Sbjct: 143 VGIKDHKD-------AM---RSFPYELTE---------------GECQKVMIAIALANQP 177
Query: 415 PILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
+L+ DE T+A++ ++ + L R Q T++LI+H + + AD I V+ GQ
Sbjct: 178 RLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237
Query: 472 TETGTHHSLLQT 483
ET L+ T
Sbjct: 238 VETAPSKELVTT 249
|
Length = 330 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 64/264 (24%), Positives = 122/264 (46%), Gaps = 52/264 (19%)
Query: 886 IEFQNIKFNYPS--RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I+ +N+ Y S R V ++N SL+++ G +VG SGAGK+++ ++ +P G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 944 IILI--------------DGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEA 988
+ + DG+G R + IG++ QE L+ ++ +N+ EA
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRG-------RAKRYIGILHQEYDLYPHRTVLDNL---TEA 389
Query: 989 ASEAEIVEVSKKANIHDFISSLPDGYD-----TVVGEKGCQLSGGQKQRIAIARTLLKRP 1043
E+++ + G+D ++ + +LS G++ R+A+A+ L+K P
Sbjct: 390 IGLELPDELARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEP 446
Query: 1044 AIMLLDEATSALDAESERV----IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN- 1098
I++LDE T +D ++ I+ A E + T I V+H + V++
Sbjct: 447 RIVILDEPTGTMDPITKVDVTHSILKAREEME------------QTFIIVSHDMDFVLDV 494
Query: 1099 SDVIVVMDKGEVVEMGSHSTLVAE 1122
D +M G++V++G +V E
Sbjct: 495 CDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
R ++++ G S ++ AG++V + G +G GK++++ ++A P G++L I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
+++ L+ G IK + A + + + +
Sbjct: 70 -DEYHQDL--------LYLGHQ-PGIK-TELTALENLRFYQRLHGPGDDEALW---EALA 115
Query: 388 ELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER- 440
++G G QLS GQ++R+A+AR + P+ +LDE +A+D + ++ L +
Sbjct: 116 QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
Query: 441 AMQGRTVILIAH 452
A QG VIL H
Sbjct: 176 AEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338
SL++ AG A VG++G GKS + +A +G+ +I L + L+K V
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK---LV 79
Query: 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG------QR 392
S E +N + + DD A ++ + +Q + + G +R
Sbjct: 80 SDE------WQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLDRR 132
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILIA 451
LS G+ ++ + +A++ P +L+LDE LD S + + E L G T++L+
Sbjct: 133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192
Query: 452 HRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484
+R I + V+ D + ETG +LQ +
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226
|
Length = 490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-08
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 35/232 (15%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---- 330
++ S ++ AG+++ + G G G++ + + S+G+IL+D K + ++S
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIRSPRDA 331
Query: 331 LRKNIGAVS---QEPSLFTG-SLMDNIKVGNMDADDEQ--IYNASMMANAHSFISQL--- 381
++ I V + L S+ +NI + ++ + I A A +I +L
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 382 -PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQE 436
P Q LSGG +Q++ +AR + +P +L+LDE T +D +E +L++E
Sbjct: 392 TPS-----PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446
Query: 437 ALERAMQGRTVILIAHRMSTIV-NADMIAVVEDGQVT-----ETGTHHSLLQ 482
A +G+ +++I+ + ++ +D I V+ +G++ E T +++
Sbjct: 447 L---AAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 495
|
Length = 500 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL------- 331
S + G+++ +VG SG GK+T+++ ++ P G++ + + DL +L
Sbjct: 26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85
Query: 332 --RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389
R G V Q P G M GN+ +MA + L
Sbjct: 86 LLRTEWGFVHQHPR--DGLRMQVSAGGNI--------GERLMAVGARHYGDIRATAGDWL 135
Query: 390 GQRGVQL------------SGGQKQRIAIARAIVKNPPILLLDEATSALD-SESEKLVQ- 435
+ V++ SGG +QR+ IAR +V +P ++ +DE T LD S +L+
Sbjct: 136 ER--VEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDL 193
Query: 436 -EALERAMQGRTVI---------LIAHRMSTIVNADMIAVVEDGQVTETG 475
L R + VI L+AHR+ V++ G+V E+G
Sbjct: 194 LRGLVRELGLAVVIVTHDLAVARLLAHRL---------LVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 50/216 (23%), Positives = 95/216 (43%), Gaps = 56/216 (25%)
Query: 278 FSLSIP-AGKMVALVGSSGCGKSTVISLVA--------RFYDPSNGDILIDSL------- 321
+ L P GK+V ++G +G GKST + ++A R+ DP + D +I
Sbjct: 92 YRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQN 151
Query: 322 ---NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
+ + +L+++ K V P + G + + +K D+ +
Sbjct: 152 YFKKLYEGELRAVHK-PQYVDLIPKVVKGKVGELLK----KVDERGKF------------ 194
Query: 379 SQLPDQYSTELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE- 431
D+ LG V +LSGG+ QR+AIA A++++ + DE +S LD
Sbjct: 195 ----DEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRL 250
Query: 432 ---KLVQEALERAMQGRTVILIAHRMSTIVNADMIA 464
++++E E G+ VI++ H ++ + D ++
Sbjct: 251 NAARVIRELAE---DGKYVIVVEHDLAVL---DYLS 280
|
Length = 591 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 6e-08
Identities = 37/203 (18%), Positives = 63/203 (31%), Gaps = 61/203 (30%)
Query: 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL 972
PG + +VGP G+GK+++ L R P G G+ + + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGP-------PGGGVIYIDGEDILEEVLDQLLL-- 51
Query: 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032
+VG K SG + R
Sbjct: 52 -------------------------------------------IIVGGKKASGSGELRLR 68
Query: 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092
+A+A +P +++LDE TS LDAE E +++ E + T I +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL---KSEKNLTVILTTND 125
Query: 1093 ------LATVINSDVIVVMDKGE 1109
D +V+
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 39/236 (16%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNL 957
E +L +L I G A++GP+G+GKS++ ++ Y EG IL G+ I +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE- 77
Query: 958 RRLRSQIGL------------VQQEPLLFSCSIRNNICYGNEAASEAEIVEV-SKKANIH 1004
R+ +G+ V L G E +E+ ++K +
Sbjct: 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 1005 D----FIS-SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
F+S ++ +G+ SGG+K+R I + L + +LDE S LD ++
Sbjct: 138 GMDPSFLSRNVNEGF-----------SGGEKKRNEILQMALLDSELAILDETDSGLDIDA 186
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115
++I + L +S IT RL I D + VM G++++ G
Sbjct: 187 LKIIAEGINKLMTSENS-------IILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 7e-08
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 4/45 (8%)
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
QLSGG+K R+A+A+ LL+ P ++LLDE T+ LD ES + ALE
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALE 110
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 55/243 (22%), Positives = 108/243 (44%), Gaps = 37/243 (15%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGI 944
+E +N+ P +++ S + G + + G GAG++ ++ L Y EG
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 945 ILIDGKGIKEYN-LRRLRSQIGLVQQE-------PLL-----FSCSIRNNICYG---NEA 988
+ I+GK + N + +R+ I +V ++ P+L + S+ + C+ + A
Sbjct: 318 VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377
Query: 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
A I ++ + LP G +LSGG +Q+ +A+ LL P +++L
Sbjct: 378 AELQIIGSAIQRLKVKTASPFLPIG----------RLSGGNQQKAVLAKMLLTNPRVLIL 427
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK 1107
DE T +D ++ I + L + + I V+ LA V+ SD ++V+ +
Sbjct: 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAI---------IVVSSELAEVLGLSDRVLVIGE 478
Query: 1108 GEV 1110
G++
Sbjct: 479 GKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 897 SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956
+ P V L+ +L + PG +ALVG +GAGKS+++ +L Y + G IL GK +
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 957 LRRLRSQ---IGLVQQE-PLLFSCSIRNNICYGNEAASE----------AEIVEVSKKAN 1002
+ SQ IG++ QE L+ +I NI G E + AE ++ + N
Sbjct: 73 PK--SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL-DAESE- 1060
L D +VGE LS G++Q + IA+ L ++++DE T AL D E+E
Sbjct: 131 -------LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179
Query: 1061 --RVI 1063
RVI
Sbjct: 180 LFRVI 184
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 40/201 (19%)
Query: 275 LKGFSLSIPAGKM-----VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329
F L + G++ + ++G +G GK+T + L+A P G + DLK
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG---------SEEDLK 402
Query: 330 SLRKNIGAVSQEP----SLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
VS +P + G++ D ++ A + ++ L D
Sbjct: 403 --------VSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIV---KPL--NLEDLL 449
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
+ + LSGG+ QR+AIA A+ + + LLDE ++ LD E +V + + R ++
Sbjct: 450 ERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505
Query: 446 --TVILIAHRMSTIVNADMIA 464
T +++ H + I D ++
Sbjct: 506 EKTALVVDHDIYMI---DYVS 523
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-07
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 38/205 (18%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ ++ + D+L++ S +P G +V ++G +G GKST+ ++ P +G I
Sbjct: 323 IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 317 LI-DSLNIKDLDLKSLRKNIGA---VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA 372
I +++ + +D R + V +E S G L D I++G +
Sbjct: 380 KIGETVKLAYVD--QSRDALDPNKTVWEEIS---GGL-DIIQLGKREV------------ 421
Query: 373 NAHSFISQL----PDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
+ +++ + DQ Q+ V QLSGG++ R+ +A+ + +LLLDE T+ LD
Sbjct: 422 PSRAYVGRFNFKGSDQ------QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
Query: 428 SESEKLVQEALERAMQGRTVILIAH 452
E+ + ++EAL G V+ I+H
Sbjct: 476 VETLRALEEALL-EFAGCAVV-ISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 61/199 (30%), Positives = 86/199 (43%), Gaps = 52/199 (26%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
RI N +Y RP +L+N S Q+ PG +VGP+GAGKS++L+
Sbjct: 260 RIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLS------------ 304
Query: 945 ILIDGKGIKEYN-------LRR--------LRSQIGLVQQEPLL---FSCSIRNNICYG- 985
LI G + Y+ RR ++ IG V L S S+RN I G
Sbjct: 305 -LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGF 363
Query: 986 ------NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQ-LSGGQKQRIA-IAR 1037
+A S+ + K A ++ L G D + LS GQ QR+A I R
Sbjct: 364 FDSIGIYQAVSDRQ----QKLAQ--QWLDIL--GIDKRTADAPFHSLSWGQ-QRLALIVR 414
Query: 1038 TLLKRPAIMLLDEATSALD 1056
L+K P +++LDE LD
Sbjct: 415 ALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 31/209 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L S +P G++V ++G +G GKST+ +L+A P+ G + D+K
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV----------DIKGSAAL 89
Query: 335 IGAVSQEPSLFTGSLMDNIKVGN--MDADDEQIYNAS----MMANAHSFISQLPDQYSTE 388
I S TG ++NI++ M E+I A+ FI Q YS+
Sbjct: 90 IAISSGLNGQLTG--IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS- 146
Query: 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAMQGRTV 447
G K R+ A ++ NP IL++DEA S D ++K + + E QG+T+
Sbjct: 147 ----------GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTI 196
Query: 448 ILIAHRMSTIVNADMIAV-VEDGQVTETG 475
I+H +S + + A+ + GQV E G
Sbjct: 197 FFISHSLSQVKSFCTKALWLHYGQVKEYG 225
|
Length = 549 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 66/256 (25%), Positives = 112/256 (43%), Gaps = 59/256 (23%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ + + F +R + +N SL + G A++GPSG GK+++L L+ P+ G I
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 946 LIDGKGIKEYNLRRL---RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
L DG+ I + RL R ++ ++ Q LF+ + + N A E
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT----DMNVFDNVAYPLRE--------- 111
Query: 1003 IHDFISSLPDG--YDTV------VGEKGC------QLSGGQKQRIAIARTLLKRPAIMLL 1048
H + LP + TV VG +G +LSGG +R A+AR + P +++
Sbjct: 112 -H---TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108
DE D + V+V + LN S+ G T + V+H D
Sbjct: 168 DEPFVGQDPITMGVLVKLISELN---SALG-----VTCVVVSH--------------DVP 205
Query: 1109 EVVEMGSHSTLVAESQ 1124
EV+ + H+ +VA+ +
Sbjct: 206 EVLSIADHAYIVADKK 221
|
Length = 269 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 26/188 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +N+ + + ++++ S ++ PG V ++GP+GAGKS++ ++ P+ G I
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQ--EPLLFSCSIRNNICYGNEAASEAEI--VEVSKKA 1001
I G+ +K + V Q + L + ++ I G + ++ EV +A
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGGLD---IIQLGKREVPSRA 425
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ F D VG QLSGG++ R+ +A+TL ++LLDE T+ LD E+ R
Sbjct: 426 YVGRFNFKGSD-QQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
Query: 1062 VIVSALEA 1069
+ AL
Sbjct: 481 ALEEALLE 488
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 39/248 (15%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T L + S + G ALVG +G+GKS++ L+ F G I I G+ ++ + L
Sbjct: 21 TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLV 80
Query: 962 SQIGLVQQEPLLFSCSIRNNICYGN---------EAASEAEIVEVS-KKANIHDFISSLP 1011
+ + ++ F + + + G + +IV + + ++ +F
Sbjct: 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF----- 135
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
+GE LSGGQK+R+ +AR + ++ ++LLDE + +D ++E I+S L L
Sbjct: 136 --RHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 1072 PKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG-SHSTLVAESQGVYSRL 1130
+ T + H L +V VM KG V+ G + +T AE+
Sbjct: 190 DEGK---------TMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLE----- 235
Query: 1131 YQLQAFSG 1138
AFSG
Sbjct: 236 ---LAFSG 240
|
Length = 272 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 37/210 (17%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
D++IL L++ G + L+G +G GKST+I L+A P +G+I
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI-------------G 370
Query: 331 LRKNI--GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388
L K I G +Q F + AD+ + + + +A +L D Y
Sbjct: 371 LAKGIKLGYFAQHQLEF------------LRADESPLQHLARLA-PQELEQKLRD-YLGG 416
Query: 389 LGQRGVQL-------SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA 441
G +G ++ SGG+K R+ +A + + P +LLLDE T+ LD + + + EAL
Sbjct: 417 FGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL-ID 475
Query: 442 MQGRTVILIAHRMSTIVNADMIAVVEDGQV 471
+G V++ R D + +V DG+V
Sbjct: 476 FEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 69/244 (28%), Positives = 105/244 (43%), Gaps = 63/244 (25%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA----RFYDPS 312
I + + +Y RP IL S + G+ +VG +G GKST++SL+ + Y S
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY--S 315
Query: 313 N-----------GDILIDSLNIKDLDLKSLRKNIGAVSQEPSL---FTGSLMDNIKVGNM 358
N G+ + D IK K+IG VS L + S+ + I G
Sbjct: 316 NDLTLFGRRRGSGETIWD---IK--------KHIGYVSSSLHLDYRVSTSVRNVILSGFF 364
Query: 359 DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQ-------LSGGQKQRIA-IARAI 410
D+ IY A +L Q+ LG LS GQ QR+A I RA+
Sbjct: 365 DSIG--IYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQ-QRLALIVRAL 416
Query: 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVIL------------IAHRMSTI 457
VK+P +L+LDE LD + +LV+ ++ + +G T +L I HR+ +
Sbjct: 417 VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476
Query: 458 VNAD 461
+ D
Sbjct: 477 PDGD 480
|
Length = 490 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 51/200 (25%), Positives = 104/200 (52%), Gaps = 30/200 (15%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+++ ++ + + P + K +L + AG+ +A++G +G GK+T++ + G++
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV-------GEL 369
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL-FTG--SLMDNIKVGNMDADDEQIYNASMMAN 373
DS +K S NIG +Q+ + F +L D + + DDEQ
Sbjct: 370 EPDSGTVK----WSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA-------- 417
Query: 374 AHSFISQLPDQYSTELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+ +L +S + ++ V+ LSGG+K R+ + +++ P +L++DE T+ +D ES +
Sbjct: 418 VRGTLGRL--LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475
Query: 433 LVQEALERAMQGRTVILIAH 452
+ ALE+ +G T+I ++H
Sbjct: 476 SLNMALEK-YEG-TLIFVSH 493
|
Length = 530 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 54/215 (25%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLR 961
+ + S ++ G V + G G G++ + L P G I +DGK + + R +R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 962 SQIGLV----QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017
+ I V ++E L+ S+ NI +SSL
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENI-----------------------ALSSL------- 104
Query: 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSC 1077
LSGG +Q++ +AR L + P +++LDE T +D ++ I +
Sbjct: 105 -------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR--------- 148
Query: 1078 GELASR-TTQITVAHRLATVIN-SDVIVVMDKGEV 1110
ELA + ++ L ++ D I+VM +G +
Sbjct: 149 -ELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 67/254 (26%), Positives = 115/254 (45%), Gaps = 55/254 (21%)
Query: 257 IDIRDVCFAYPSRPDQLI--LKGFSLSIPAGKMVALVGSSGCGKS-TVISLV-------- 305
+D++D+ + S PD + + + S+ AG+ + +VG SG GKS T +L+
Sbjct: 13 LDVKDLRVTF-STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 71
Query: 306 ----ARFYDPSNGDILIDSLNIKDLDLKSLR-KNIGAVSQEP--SL---------FTGSL 349
A F NG + LN+ + +L LR + I + Q+P SL L
Sbjct: 72 IGGSATF----NGREI---LNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVL 124
Query: 350 MDNIKVGNMDADDEQI--YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407
M + + +A +E + +A M A + P ++S GG +QR+ IA
Sbjct: 125 MLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS-----------GGMRQRVMIA 173
Query: 408 RAIVKNPPILLLDEATSALD----SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADM 462
A++ P +L+ DE T+ALD ++ L+ E L+R +I+I H + + D
Sbjct: 174 MALLCRPKLLIADEPTTALDVTVQAQIMTLLNE-LKREF-NTAIIMITHDLGVVAGICDK 231
Query: 463 IAVVEDGQVTETGT 476
+ V+ G+ E G
Sbjct: 232 VLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 875 ESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL 934
E+S SG+I E +N+ + + ++ +FS Q++ G K+AL+GP+G GK+++L L+
Sbjct: 311 EASRSGKIV--FEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLM 365
Query: 935 L 935
L
Sbjct: 366 L 366
|
Length = 635 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 65/248 (26%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKD 325
S D+ IL+G +L + G++ A++G +G GKST+ + +A Y+ + G + ++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 326 LDLKS------------------------LRKNIGAVS---QEPSL----FTGSLMDNIK 354
L + L+ + AV + L F + + I
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129
Query: 355 VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQL--SGGQKQRIAIARAIVK 412
+ M D L R V + SGG+K+R I + V
Sbjct: 130 LLKMPED---------------------------LLTRSVNVGFSGGEKKRNDILQMAVL 162
Query: 413 NPPILLLDEATSALDSESEKLVQEALERAMQG-RTVILIAH--RMSTIVNADMIAVVEDG 469
P + +LDE+ S LD ++ K+V + + G R+ I++ H R+ + D + V+ G
Sbjct: 163 EPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQG 222
Query: 470 QVTETGTH 477
++ ++G
Sbjct: 223 RIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L+N L IE +V LVG +GAGKS+++ +L N ++L DG+ I E +L R Q
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVARLQ 72
Query: 964 IGLVQQEPLLFSCSIRNNICYGNEAASE------------------------AEIVEVSK 999
Q P ++ + + G E +E A++ E
Sbjct: 73 ----QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD 128
Query: 1000 KAN-------IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
N I++ ++ L D LSGG ++ A+ R L+ P ++LLDE T
Sbjct: 129 HHNLWQLENRINEVLAQLGLDPDA----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPT 184
Query: 1053 SALDAES 1059
+ LD E+
Sbjct: 185 NHLDIET 191
|
Length = 635 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 389 LGQRGVQLSGGQKQRIAIARAIVK---NPPILLLDEATSALDSESEKLVQEALER-AMQG 444
LGQ LSGG+ QRI +A+ + K + +LDE T+ L + K + E L+R +G
Sbjct: 823 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKG 882
Query: 445 RTVILIAHRMSTIVNADMI 463
TV++I H + I AD I
Sbjct: 883 NTVVVIEHNLDVIKTADYI 901
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327
SR ++ + + AG+ + + G +G GK+T++ ++A +G I ID D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSF-ISQLPDQYS 386
+ + + P L AD + N + H Q+P
Sbjct: 80 RS---RFMAYLGHLPGL--------------KADLSTLENLHFLCGLHGRRAKQMPGSAL 122
Query: 387 TELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL 438
+G G QLS GQK+R+A+AR + P+ LLDE + LD E LV +
Sbjct: 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I++ ++ Y +L+LK SL+I G + LVG +G GKST++ L+A +P G +
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 317 LIDS 320
S
Sbjct: 58 TWGS 61
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 51/203 (25%), Positives = 86/203 (42%), Gaps = 44/203 (21%)
Query: 275 LKGFSLSIPAGKM-----VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329
L FSL + G++ + +VG +G GK+T L+A P G++ D +LK
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--------DPELK 401
Query: 330 SLRKNIGAVSQEP----SLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFIS--QLPD 383
+S +P + G++ D ++ D I QL
Sbjct: 402 --------ISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYK--------SEIIKPLQLER 445
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
+ LSGG+ QR+AIA + ++ + LLDE ++ LD E V +A+ R +
Sbjct: 446 LLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501
Query: 444 GR--TVILIAHRMSTIVNADMIA 464
R T +++ H + I D I+
Sbjct: 502 EREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-06
Identities = 44/212 (20%), Positives = 88/212 (41%), Gaps = 49/212 (23%)
Query: 278 FSLSIP-AGKMVALVGSSGCGKSTVISLVA--------RFYDPSNGDILIDSL------- 321
+ L IP GK+ ++G +G GK+T + +++ + + + D ++
Sbjct: 91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQN 150
Query: 322 ---NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI 378
+ + ++K + K V P +F G + + +K D+
Sbjct: 151 YFKKLYNGEIKVVHK-PQYVDLIPKVFKGKVRELLK----KVDERGKL------------ 193
Query: 379 SQLPDQYSTELGQRGV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
D+ LG + +LSGG+ QR+AIA A++++ DE TS LD
Sbjct: 194 ----DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRL 249
Query: 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIA 464
V + +G+ V+++ H ++ + D +A
Sbjct: 250 NVARLIRELAEGKYVLVVEHDLAVL---DYLA 278
|
Length = 590 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 28/239 (11%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNLR- 958
+L +L++ PG A++GP+G+GKS++ A L Y+ G + GK + E +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 959 RLRSQIGLVQQEPL-LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS------SLP 1011
R I + Q P+ + S + + A E + + D + +P
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMP 134
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL- 1070
+ D + SGG+K+R I + + P + +LDE+ S LD ++ +++ + +L
Sbjct: 135 E--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR 192
Query: 1071 NPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMGSHSTLVA--ESQG 1125
+ K S I V H R+ I D + V+ +G +V+ G + LV E QG
Sbjct: 193 DGKRSF----------IIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT-LVKQLEEQG 240
|
Length = 248 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQG-RTVILIA 451
+ LSGG+ QR+AIA A+++N L DE ++ LD E A+ R + +G +T +++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 452 HRMSTIVN-ADMIAVVEDGQVTETGT 476
H ++ + +D I V E G+ G
Sbjct: 130 HDLAVLDYLSDRIHVFE-GEPGVYGI 154
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952
NN +L++ V+L+GP+GAGK++V L FY P G IL+ G+ I
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-06
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 22/184 (11%)
Query: 895 YPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954
R VT + + S ++ G V + G +G G+S ++ + P G IL++GK +
Sbjct: 266 KDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 955 YN----LRRL--------RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002
RRL R GLV L + + + + S ++
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG---RHDKKPFSRGGFLDRRA--- 378
Query: 1003 IHDFISSLPDGYDTVVG---EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
I F L + +D LSGG +Q++ +AR L +RP +++ + T LD +
Sbjct: 379 IRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 1060 ERVI 1063
I
Sbjct: 439 IEFI 442
|
Length = 501 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 35/219 (15%)
Query: 260 RDVCFAYP-SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP---SNGD 315
R++ + + ++IL + G + AL+G+SG GK+T+++++A + GD
Sbjct: 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGD 822
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
L+ N + LD S +++IG V Q+ ++ + + ++A +
Sbjct: 823 RLV---NGRPLD-SSFQRSIGYVQQQ----------DLHLPTSTVRESLRFSAYLRQPKS 868
Query: 376 SFISQLPDQYSTEL--------------GQRGVQLSGGQKQRIAIARAIVKNPPILL-LD 420
S+ +Y E+ G G L+ Q++R+ I +V P +LL LD
Sbjct: 869 VSKSE-KMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD 927
Query: 421 EATSALDSESEKLVQEALER-AMQGRTVILIAHRMSTIV 458
E TS LDS++ + + + + A G+ ++ H+ S I+
Sbjct: 928 EPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAIL 966
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-06
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +N+ + + P + N +L +E G ++A++G +G GK+++L L+ +P+ G +
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 8e-06
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 52/234 (22%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLR 961
+ + S + G + + G GAG++ + L + G IL+DGK ++ + R ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 962 SQIGLV----QQEPLLFSCSIRNNICYGN----------EAASEAEIVEVSKKANIHDFI 1007
+ I V + E L+ SI NI + + E + E +I
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAE--------RYI 385
Query: 1008 SSL---PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
L + +G LSGG +Q++ +AR L P +++LDE T +D ++ I
Sbjct: 386 RRLRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIY 441
Query: 1065 SALEALNPK-------SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
+ L + SS EL + ++ R I+VM +G +V
Sbjct: 442 RLIRELAAEGKAILMISSELPEL------LGLSDR---------ILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE-KLVQEALERAMQGRTVILIAHRM 454
LSGG +Q++ I R ++ P IL+LDE T +D ++ ++ Q E A + + +I+I+ M
Sbjct: 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451
Query: 455 STIVN-ADMIAVVEDGQV-----TETGTHHSLLQTSDFY 487
++ D I V+ +G V T+T T + +L+ + +
Sbjct: 452 PELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASLH 490
|
Length = 491 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 913 PGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNLRRL-----RSQIG 965
PG+ AL+G SGAGK++++ +L + EG I I G K+ R+ ++ I
Sbjct: 905 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIH 964
Query: 966 LVQ---QEPLLFSCSIRNNICYGNEAASE--AEIVEVSKKANIHDFISSLPDGYDTVVGE 1020
Q +E L++S +R E E++E+ + N+ D I LP V G
Sbjct: 965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG----VTG- 1019
Query: 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
LS Q++R+ IA L+ P+I+ +DE TS LDA + +++ +
Sbjct: 1020 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1062
|
Length = 1470 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334
L SL G ++ LVG +G GKST+ +++ P+ G + ++ ++ + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD------RNGEVSVIAIS 93
Query: 335 IGAVSQEPSLFTGSLMDNI--KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
G Q TG ++NI K+ M ++I +M F +ELG+
Sbjct: 94 AGLSGQ----LTG--IENIEFKMLCMGFKRKEI--KAMTPKIIEF---------SELGEF 136
Query: 393 GVQ----LSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEKLVQEALERAMQGRTV 447
Q S G + ++ + I NP IL++DEA S D ++K + + E Q +T+
Sbjct: 137 IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196
Query: 448 ILIAHRMSTIVN-ADMIAVVEDGQVTETG 475
++H + + IA +E G++ + G
Sbjct: 197 FFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
|
Length = 264 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 9e-06
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 24/227 (10%)
Query: 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS- 343
G+ L+G +G GK+T ++ ++GD + +I ++ + +N+G Q +
Sbjct: 1965 GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI 2023
Query: 344 --LFTGS--LMDNIKVGNMDADD-EQIYNASMMANAHS-FISQLPDQYSTELGQRGVQLS 397
L TG L ++ + A++ E++ N S+ + S + +L Y S
Sbjct: 2024 DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY-----------S 2072
Query: 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMST 456
GG K++++ A A++ PP++LLDE T+ +D ++ +++ + + +GR V+L +H M
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132
Query: 457 I-VNADMIAVVEDGQVTETGT-HHSLLQTSDFYNRLFTMQNLRPIDD 501
+A++ G GT H + D Y + TM+ P DD
Sbjct: 2133 CEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGY--IVTMKIKSPKDD 2177
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 24/189 (12%)
Query: 899 PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL----RFYDPNEGIILIDGKGIKE 954
+L I+PG ++G G+G S++L + F+ EG+I DG +E
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 955 YNLRRLRSQI-----------GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+ R + L E L F+ + N + A++
Sbjct: 132 I-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP---QNRPDGVSREEYAKHIADV 187
Query: 1004 HDFISSLPDGYDTVVGE---KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
+ L +T VG +G +SGG+++R++IA L I D AT LD+ +
Sbjct: 188 YMATYGLSHTRNTKVGNDFVRG--VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATA 245
Query: 1061 RVIVSALEA 1069
+ AL+
Sbjct: 246 LEFIRALKT 254
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQI 964
N SL++ G + L G GAG++ + L G I+++GK I + RL
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR-- 338
Query: 965 GLV------QQEPLLFSCSIRNNIC---YGN-----EAASEAEIVEVSKKA-NIHDFISS 1009
GLV Q L + N+C + + A E ++E ++A NI
Sbjct: 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-----K 393
Query: 1010 LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
LSGG +Q++ IA+ L P ++++DE T +D
Sbjct: 394 FNHAEQAART-----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 36/189 (19%)
Query: 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-RFYD--PSNGDIL----------I 318
LI+ S+++ G+ LVG +G GK+T + +A D P N IL
Sbjct: 191 DLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249
Query: 319 DSLN-IKDLDL---KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD--------EQIY 366
+L + + D+ + L + V+Q+ L + K N D D E+IY
Sbjct: 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIY 309
Query: 367 NA-------SMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILL 418
+ A A S ++ L ++ E+ + SGG + RIA+ARA+ P +LL
Sbjct: 310 KRLELIDAYTAEARAASILAGL--SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLL 367
Query: 419 LDEATSALD 427
LDE T+ LD
Sbjct: 368 LDEPTNHLD 376
|
Length = 718 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-05
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 389 LGQRGVQLSGGQKQRIAIARAIVK---NPPILLLDEATSALDSESEKLVQEALERAM-QG 444
LGQ LSGG+ QR+ +A+ + K + +LDE T+ L + K + E L R + +G
Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875
Query: 445 RTVILIAHRMSTIVNADMI 463
TVI+I H + I AD I
Sbjct: 876 NTVIVIEHNLDVIKTADWI 894
|
Length = 935 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 20/200 (10%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ ++FN E L + S+ P + G +G GKSS+L ++ P+ G I
Sbjct: 2 LSLHQLQFNI----EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 946 LIDGKGIKEYNLRRLR-SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
K N+ + + IG L ++ N+ + +E + AE + A IH
Sbjct: 58 YY--KNCNINNIAKPYCTYIG--HNLGLKLEMTVFENLKFWSEIYNSAETLY----AAIH 109
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
F L D D EK LS G ++ +AIAR + + + LLDE + L E+ R ++
Sbjct: 110 YF--KLHDLLD----EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN-RDLL 162
Query: 1065 SALEALNPKSSSCGELASRT 1084
+ L + S L+S
Sbjct: 163 NNLIVMKANSGGIVLLSSHL 182
|
Length = 195 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 78/299 (26%), Positives = 138/299 (46%), Gaps = 64/299 (21%)
Query: 269 RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLV--------ARFYDPSNG------ 314
R +++L + +I G+ V LVG +GCGKST+++L+ + P N
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN 70
Query: 315 -----------DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDE 363
+ +ID D + + L + ++ G + I G +DA
Sbjct: 71 QETPALPQPALEYVIDG----DREYRQLEAQLHDANERND---GHAIATIH-GKLDA--- 119
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQ-LSGGQKQRIAIARAIVKNPPILLLDEA 422
I ++ + A S + L +S E +R V SGG + R+ +A+A++ +LLLDE
Sbjct: 120 -IDAWTIRSRAASLLHGL--GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 423 TSALDSESEKLVQEALERAMQGRTVILIAHR---MSTIVNADMIAVVEDGQVTE-TGTHH 478
T+ LD ++ +++ L ++ QG T+ILI+H + IV D I +E + E TG +
Sbjct: 177 TNHLDLDAVIWLEKWL-KSYQG-TLILISHDRDFLDPIV--DKIIHIEQQSLFEYTGNYS 232
Query: 479 S--------LLQTSDFYN----RLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLE 525
S L Q Y R+ +Q+ ID R KA+ ++ + +I ++E++E
Sbjct: 233 SFEVQRATRLAQQQAMYESQQERVAHLQSY--IDRFRAKAT--KAKQAQSRIKMLERME 287
|
Length = 638 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 45/218 (20%)
Query: 891 IKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILI 947
+ N + ++T+L + S I+P L+GP +GK+++L L DP+ G I
Sbjct: 168 LGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITY 227
Query: 948 DGKGIKEYNLRRLRSQIG--------LVQQEPLLFSCSIRNNICYG--------NEAAS- 990
+G + E+ R+ + I + +E L FS C G +E A
Sbjct: 228 NGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSAR-----CQGVGTRYDLLSELARR 282
Query: 991 --------EAEIVEVSKKANIHDFISSLPDGY-----------DTVVGEKGCQ-LSGGQK 1030
EAE+ K + SSL Y DT+VG++ + +SGGQK
Sbjct: 283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342
Query: 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALE 1068
+R+ ++ + +DE ++ LD+ + IV L+
Sbjct: 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380
|
Length = 1470 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 394 VQLSGGQKQRIAIARAI----VKNPPILLLDEATSALDSES-EKLVQEALERAMQGRTVI 448
+QLSGG+K+ A+A + +K P+ +LDE LD + L + LE ++G VI
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 449 LIAHRMSTIVNAD 461
+I H AD
Sbjct: 136 VITHLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 53/227 (23%)
Query: 905 NNFSLQ----IEPGLKVALVGPSGAGKSSVLALLL--------RFYDPNEGIILID---G 949
N F L PG V ++GP+G GKS+ L +L R+ DP +I G
Sbjct: 87 NGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG 146
Query: 950 KGIKEYNLRRLRSQ-------IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVE-VSKKA 1001
++ Y ++L V P + + E+++ V ++
Sbjct: 147 TELQNY-FKKLYEGELRAVHKPQYVDLIPKVVKGKVG-------------ELLKKVDERG 192
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ + L G + V+ +LSGG+ QR+AIA LL+ + DE +S LD +R
Sbjct: 193 KFDEVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR-QR 249
Query: 1062 VIVSAL--EALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVM 1105
+ + + E I V H LA + SD + ++
Sbjct: 250 LNAARVIRELAEDGK----------YVIVVEHDLAVLDYLSDFVHIL 286
|
Length = 591 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 5e-05
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 41/182 (22%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI-DSLNI------ 323
D+L++ S S+P G +V ++G +G GKST+ ++ P +G I I +++ +
Sbjct: 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS 395
Query: 324 -KDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL- 381
LD K V +E S G L D IKVGN + + +++ +
Sbjct: 396 RDALDPN---KT---VWEEIS---GGL-DIIKVGNREI------------PSRAYVGRFN 433
Query: 382 ---PDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
DQ Q+ V LSGG++ R+ +A+ + + +LLLDE T+ LD E+ + ++EA
Sbjct: 434 FKGGDQ------QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEA 487
Query: 438 LE 439
L
Sbjct: 488 LL 489
|
Length = 556 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA----RFYDPSNGDILIDSLNIKDLDLK 329
ILK I G++ ++G G G ST++ +A F+ G I D + +++ K
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI-KK 134
Query: 330 SLRKNIGAVSQE----PSLFTGSLMDNI----KVGN-MDADDEQIYNASMMANAHSFISQ 380
R ++ ++ P L G +D N D + Y A +A+ +
Sbjct: 135 HYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY-AKHIADVYMATYG 193
Query: 381 LPDQYSTELGQ---RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
L +T++G RGV SGG+++R++IA A + I D AT LDS + A
Sbjct: 194 LSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT------A 245
Query: 438 LE--RAMQGRTVIL 449
LE RA++ IL
Sbjct: 246 LEFIRALKTSANIL 259
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-05
Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 56/228 (24%)
Query: 905 NNFSL----QIEPGLKVALVGPSGAGKSSVLALL---LRFYDPNEGII--------LID- 948
N F L + G ++GP+G GK++ + +L L PN G ++
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKR 142
Query: 949 --GKGIKEYNLRRLRS-------QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVE-VS 998
G ++ Y ++L + + V P +F +R E+++ V
Sbjct: 143 FRGTELQNY-FKKLYNGEIKVVHKPQYVDLIPKVFKGKVR-------------ELLKKVD 188
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
++ + + + L G + ++ +LSGG+ QR+AIA LL+ DE TS LD
Sbjct: 189 ERGKLDEVVERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR 246
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-INSDVIVVM 1105
+R+ V+ L ELA + V H LA + +D + +
Sbjct: 247 -QRLNVARLIR---------ELAEGKYVLVVEHDLAVLDYLADNVHIA 284
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 5e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRM 454
LS Q++R+ IA +V NP I+ +DE TS LD+ + +V + + GRTV+ H+
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079
Query: 455 S 455
S
Sbjct: 1080 S 1080
|
Length = 1470 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 53/243 (21%), Positives = 118/243 (48%), Gaps = 25/243 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKS-TVISLVARFYDPSNGD 315
++ R++ P + + S S+ G+++ + G G G++ V +L + G+
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 316 ILIDS--LNIKDLDLKSLRKNIGAVSQE-------PSLFTGSLMDNIKVGNMD--ADDEQ 364
+ I+ ++I++ +++R I V ++ P L G NI + + +
Sbjct: 318 VFINGKPVDIRNP-AQAIRAGIAMVPEDRKRHGIVPILGVGK---NITLSVLKSFCFKMR 373
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
I A+ + S I +L + ++ G +LSGG +Q+ +A+ ++ NP +L+LDE T
Sbjct: 374 IDAAAELQIIGSAIQRLKVKTASPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432
Query: 425 ALD----SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479
+D E KL+ + A +G +I+++ ++ ++ +D + V+ +G++ +H+
Sbjct: 433 GVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489
Query: 480 LLQ 482
L Q
Sbjct: 490 LTQ 492
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 25/57 (43%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAH 452
LSGG++ R+ +AR +K +L+LDE T+ LD E+ +L++E L+ + QG TV+L++H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD-SYQG-TVLLVSH 495
|
Length = 635 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 25/79 (31%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRM 454
LSGG +Q++AIAR ++ P +L+LDE T +D ++K + + + + G ++IL++ M
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455
Query: 455 STIVN-ADMIAVVEDGQVT 472
++ +D I V+ +G+++
Sbjct: 456 PEVLGMSDRILVMHEGRIS 474
|
Length = 501 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 35/173 (20%)
Query: 905 NNFSLQ----IEPGLKVALVGPSGAGKSSVLALLL--------RFYDPNEGIILID---G 949
N+F L G + LVGP+G GKS+ L +L +F DP + ++D G
Sbjct: 13 NSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRG 72
Query: 950 KGIKEYNLRRLRSQIGLVQ------QEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
++ Y + L + ++ P + + +E E+V+
Sbjct: 73 SELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQL----- 127
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
V+ QLSGG+ QR+AIA L + DE +S LD
Sbjct: 128 ---------ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL 304
++ +V + + ++K FS + G +AL+G +GCGK+T++ L
Sbjct: 321 EMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKL 364
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 42/181 (23%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962
+L+N + I PG KV LVG +G GKS++LALL + I DG
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALL-------KNEISADGGSYTFPG----NW 64
Query: 963 QIGLVQQE-PLLFSCSIRNNICYGNEAAS-EAEIVEVSKK------ANIH---DFI---- 1007
Q+ V QE P L ++ I E EA++ + +++ A IH D I
Sbjct: 65 QLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWT 124
Query: 1008 -----SSLPDGYDTVVGEKGCQL-------SGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
+SL G +G QL SGG + R+ +A+ L+ R ++LLDE T+ L
Sbjct: 125 IRSRAASLLHG----LGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL 180
Query: 1056 D 1056
D
Sbjct: 181 D 181
|
Length = 638 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
DG V + LSGG+ QR+AIA LL+ L DE ++ LD E
Sbjct: 59 DGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE 105
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVILIAHRM 454
LSGG +Q++ IA+ + +P +L++DE T +D + + + + A Q V+ I+ +
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463
Query: 455 STIVN-ADMIAVVEDGQVT 472
I AD + V+ G+++
Sbjct: 464 EEIEQMADRVLVMHQGEIS 482
|
Length = 510 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 389 LGQRGVQLSGGQKQRIAIAR---AIVKNPPILLLDEATSALDSES-EKLVQEALERAMQG 444
LG+ LSGG+ QR+ +A A K P + +LDE T+ L + + L+ QG
Sbjct: 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862
Query: 445 RTVILIAHRMSTIVNADMI 463
TV++I H M + AD +
Sbjct: 863 HTVVIIEHNMHVVKVADYV 881
|
Length = 1809 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 608 LAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFE-KPQNDAGSLT 666
A+ + L + H Q F + LR + LR ++ F+ +P G L
Sbjct: 69 AAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQP---VGQLI 125
Query: 667 SRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717
SR+ +DT +++ + ++ +++ + I + +DWRMALVA + P
Sbjct: 126 SRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176
|
Length = 592 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
LSGG +Q++AIAR L+ RP +++LDE T +D
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 395 QLSGGQKQ------RIAIARAIVKNPPI--LLLDEATSALDSESEKLVQEALER-AMQGR 445
LSGG++ R+A++ + + L LDE LD E + + E LE GR
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 446 TVILIAH 452
+I+I+H
Sbjct: 875 QIIIISH 881
|
Length = 908 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 395 QLSGGQKQ------RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ----- 443
+ SGG+K R+A+A N IL LDE T+ LD E+ ++E+L ++
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQ 171
Query: 444 -GRTVILIAH 452
+I+I H
Sbjct: 172 KNFQLIVITH 181
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALD----SESEKLVQEALERAMQGRTVILI 450
+LSGG +Q+ +A+ ++ NP IL+LDE T +D E KL+ + QG +I+I
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL---VQQGVAIIVI 461
Query: 451 AHRMSTIVN-ADMIAVVEDGQVT 472
+ + ++ +D + V+ +G++
Sbjct: 462 SSELPEVLGLSDRVLVMHEGKLK 484
|
Length = 506 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 55/207 (26%)
Query: 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963
L N + I + V + G SG+GKS+++ NEG+ RL S
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV---------NEGL--------YASGKARLISF 53
Query: 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC 1023
+ + L+F ++ F+ + GY T+ G+K
Sbjct: 54 LPKFSRNKLIFIDQLQ--------------------------FLIDVGLGYLTL-GQKLS 86
Query: 1024 QLSGGQKQRIAIARTLLKRP--AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA 1081
LSGG+ QR+ +A L P + +LDE ++ L + ++ ++ L +
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGN------ 140
Query: 1082 SRTTQITVAHRLATVINSDVIVVMDKG 1108
T I + H L + ++D I+ G
Sbjct: 141 ---TVILIEHNLDVLSSADWIIDFGPG 164
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072
G+ T +G LSGG +Q++ I R LL +P I++LDE T +D ++ I + L
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 1073 K-------SSSCGELASRTTQITVAH--RLATVINS 1099
K SS EL T +I V +A ++++
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475
|
Length = 491 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.003
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071
LSGG+K R+ + ++++P ++++DE T+ +D ES +E+LN
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-------IESLN 478
|
Length = 530 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 63/276 (22%), Positives = 106/276 (38%), Gaps = 65/276 (23%)
Query: 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKS--------------SVLALLL 935
I+F V ++ S+ + G LVG SG+GKS V A +
Sbjct: 10 TIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRM 68
Query: 936 RFYDPNEGIILIDGKGIKEYNLRRLRSQ-IGLVQQEPLLFSC---------SIRNNI--- 982
RF D ID + R+L + ++ QEP SC + NI
Sbjct: 69 RFDD-------IDLLRLSPRERRKLVGHNVSMIFQEPQ--SCLDPSERVGRQLIQNIPAW 119
Query: 983 CYGNE-----AASEAEIVEVSKKANI---HDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034
Y + +E+ + I D + S P +L+ G+ Q++
Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY-----------ELTEGECQKVM 168
Query: 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094
IA L +P +++ DE T++++ ++ I L LN S+ TT + ++H L
Sbjct: 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN--------TTILLISHDLQ 220
Query: 1095 TVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129
+ +D I V+ G+ VE LV Y++
Sbjct: 221 MISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQ 256
|
Length = 330 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1139 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-203 Score=1827.88 Aligned_cols=1120 Identities=46% Similarity=0.760 Sum_probs=1027.9
Q ss_pred hHHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 3 AVKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIA 73 (1139)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 73 (1139)
+..+.+||.++++|++.| ||++++|||.+ .+|++.+++++|++.|++++++.++.+++.+.++++++++.
T Consensus 88 ~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 88 GFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999998 99999999998 67999999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHH
Q 048639 74 VICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIII 153 (1139)
Q Consensus 74 ~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 153 (1139)
|+..|+++++++.+.|++++....+.+.+.+...++++.++++.++++|++.++|||.+|+.|+.+.++|.+..+...+.
T Consensus 167 F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 167 FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 154 SRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQ 233 (1139)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~ 233 (1139)
..+...+.++..++..++.++.+++.+|+|+.++..+..++|.+++++..++.....+.+..|.+..+..+++++.+|++
T Consensus 247 gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~ 326 (1228)
T KOG0055|consen 247 GIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFE 326 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCcc-CCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 234 VIQRKPRISY-SSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 234 ~l~~~~~~~~-~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
.++..|.+.. ...+.......+.|+|+||+|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|+
T Consensus 327 ~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 327 TIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred HhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 9998877632 222223445678999999999999998889999999999999999999999999999999999999999
Q ss_pred ccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcccccc
Q 048639 313 NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392 (1139)
Q Consensus 313 ~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~ 392 (1139)
+|+|.+||.|+++++.+|+|++||.|+|+|.||++||+|||.||+|+++.+++.+||+++++++|+..+|+||+|.+||+
T Consensus 407 ~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 407 SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEE
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVT 472 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 472 (1139)
|.+|||||||||||||||++||+||||||||||||+++++.++++|.+..+|+|.|+||||++++++||+|++|++|+|+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhhhccchHHHHHHhhccCCCCCCc-CcccccccccccchhhhhhhcccCchhhhhhc--ccccch----hhhcc
Q 048639 473 ETGTHHSLLQTSDFYNRLFTMQNLRPIDDS-RTKASTVESTSTEQQISVVEQLEEPEESKREL--SASTGQ----EEVKG 545 (1139)
Q Consensus 473 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~ 545 (1139)
|.|+|+||++..|.|.++++.|.....++. +...+..+................+....... ..++++ .....
T Consensus 567 E~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 646 (1228)
T KOG0055|consen 567 EQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEE 646 (1228)
T ss_pred EecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccc
Confidence 999999999999999999988865432221 00000000000000000000000000000000 000000 00001
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHHHHHHHHHHHHHHH
Q 048639 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQ---AKQEVGWYSLAFSLVGLFSLFTHT 622 (1139)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1139)
.....++++ +++++|+|+++++|++++++.++..|++++.++.....++..+ .......|+++|++++++.++..+
T Consensus 647 ~~~~s~~~i-~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 647 DEKVSFWRI-FKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred cccccHHHH-HHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134567777 7778899999999999999999999999999999999887422 233344599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 623 LQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSL 702 (1139)
Q Consensus 623 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 702 (1139)
+++|+|.+.++++..++|..+|+++++++++|||.++|+ |+|.+|+.+|...++..+.+.+..+++.+.+++++++++|
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 048639 703 VVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSS 782 (1139)
Q Consensus 703 ~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 782 (1139)
+++|+++++++++.|++++..+.+.+++....++.+....+......|++++++||++|+.|+++.+.|.+.++...+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 783 RKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEI 862 (1139)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ 862 (1139)
.++..+.+..+++.+.+.++.+++++|||.+++..|.+++.+++.+++.+.+....+.+...+.|++.++..++.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q 048639 863 LDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942 (1139)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~ 942 (1139)
++++|+.+++.+.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.+|.|||+|.+
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99999777654344445567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCC
Q 048639 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 943 G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G 1022 (1139)
|.|.|||+||+++++++||++|++|+|||.||++||||||.||.++++++||.+|++.+++|+||.+||+||||+|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996568999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI 1102 (1139)
.+||||||||||||||++||||||||||||||||.++|+.||++|++.. .++| +|+|||||+||++||.|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~---------~gRT-~IvIAHRLSTIqnaD~I 1194 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM---------EGRT-TIVIAHRLSTIQNADVI 1194 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh---------cCCc-EEEEecchhhhhcCCEE
Confidence 9999999999999999999999999999999999999999999999876 4555 89999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1103 VVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1103 ~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
+|+++|+|+|+|||++|+++ +|.|++|++.|..
T Consensus 1195 ~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred EEEECCEEEecccHHHHHhC-CCchHHHhhhccC
Confidence 99999999999999999985 9999999998853
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-175 Score=1623.32 Aligned_cols=1076 Identities=24% Similarity=0.327 Sum_probs=861.8
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV-ICCWEVSLLIFLVVPMILVIGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~l~l~~l~~~~~~~~~~~~~~ 99 (1139)
|+..-..-... ++|+++|.|++|++++.++... +..++..++.++.++.+++ .++| -++++++++.+++++..+++
T Consensus 286 L~ls~~~~~~~-t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~-sa~~G~~~~il~~p~n~~~a 362 (1381)
T KOG0054|consen 286 LRLSNSARGET-TVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGP-SALAGVAVMVLLIPLNSFLA 362 (1381)
T ss_pred hcCchhhccCC-CcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHH
Confidence 55555444444 7899999999999999998754 3344444444444433333 2334 46777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
++.++.+++.++..|++.+.++|.++|||+||+|+||+.|.++.++.++++.+..++..++.++...+......++.++
T Consensus 363 ~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~- 441 (1381)
T KOG0054|consen 363 KKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVV- 441 (1381)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999888877776655544433
Q ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEE
Q 048639 180 IWVGAVV-VTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNID 258 (1139)
Q Consensus 180 ~~~g~~~-v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~ 258 (1139)
.+++|. ..++.+++..+|+.+.++..+..|+..++..+..+.++.+|.+|+.+++..++............+.+..++
T Consensus 442 -tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 520 (1381)
T KOG0054|consen 442 -TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIE 520 (1381)
T ss_pred -HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEE
Confidence 345555 557789999999999999999999999999999999999999999999986544322211112223345799
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
++|.+|+|++....+.|+||||+|++|+++|||||+|||||+|+.+|+|++++.+|++.++| .++||
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv 587 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYV 587 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEe
Confidence 99999999864445699999999999999999999999999999999999999999999998 59999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEE
Q 048639 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILL 418 (1139)
Q Consensus 339 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ill 418 (1139)
||+||+|++||||||+||.| .+.++..++.+.|+++++++.||.|+.|.|||+|.+|||||||||+||||+|+|+||+|
T Consensus 588 ~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 588 PQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred ccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEE
Confidence 99999999999999999986 45566666777777889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHH-HHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhccCC
Q 048639 419 LDEATSALDSESEK-LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLR 497 (1139)
Q Consensus 419 lDEpts~LD~~~~~-~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 497 (1139)
||||+||+|+|+.+ .+.++++...++||+|+|||+++++++||+|++|+||+|++.|+++|+++....+.++.......
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~ 746 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESE 746 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchh
Confidence 99999999999865 56678888889999999999999999999999999999999999999999888888874433322
Q ss_pred CCCCcCcccccccccccchhhhhhhcccCchhhhhhc---ccccchhhhcccccchhhHHHHhhchh--hHHHHHHHHHH
Q 048639 498 PIDDSRTKASTVESTSTEQQISVVEQLEEPEESKREL---SASTGQEEVKGKRTTIFFRIWFCLNER--ELLRLVVGTVA 572 (1139)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 572 (1139)
...+......+..+.................+...+. +....++++...+...+ ..|..|.+. ++....+.+++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~-~vY~~Y~~a~~g~~~~~~~~~~ 825 (1381)
T KOG0054|consen 747 QEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSW-SVYKKYIKAAGGFLLVLLILLL 825 (1381)
T ss_pred hccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeH-HHHHHHHHhcccHHHHHHHHHH
Confidence 1111000000000000000000000000000000000 00001111222333333 344444443 22222222333
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 048639 573 AAFSGISKPLFGFFIITIGVAYYDPQAK-QEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNE 651 (1139)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~ 651 (1139)
......+.....+|+..|.+.-...... ....+|.++|++++++..++..++.+.+...+.+++++||++|+++++++|
T Consensus 826 ~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrap 905 (1381)
T KOG0054|consen 826 FVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAP 905 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3333333333444444333321111110 356689999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048639 652 IAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQ 731 (1139)
Q Consensus 652 ~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~ 731 (1139)
|+||| .+|+|||+|||++|++.+|..+|..+..++..++.+++.++++.+..|++ +++++|+.+++++++.+|..
T Consensus 906 m~FFd--tTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f---li~~~pl~v~~~~~~~~Y~~ 980 (1381)
T KOG0054|consen 906 MSFFD--TTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWF---LIAIIPLGVIYYFVQRYYLA 980 (1381)
T ss_pred chhcC--CCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 99999 89999999999999999999999999999999999999999888887755 45556666666666665555
Q ss_pred chhhhHHHHH----HHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 732 GFSGDSAAAH----TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVA 807 (1139)
Q Consensus 732 ~~~~~~~~~~----~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1139)
. +|++++.+ ++.++|++|++.|+.|||||+.+++|.+++...+|.+.+..... .....|.++..-+...+.++.
T Consensus 981 t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~-~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 981 T-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLS-ISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred H-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3 77777765 56799999999999999999999999999999999999875543 334455555554443333333
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC--CCCCCCcccc
Q 048639 808 LWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE--SSESGRIKGR 885 (1139)
Q Consensus 808 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~ 885 (1139)
..+.+.+...+..++|.+..++.+.......+..++....++++.++++||+.+|.+.++|.+...+. .++.++.+|.
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~ 1138 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGE 1138 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCe
Confidence 33333333333366787777777777777888889999999999999999999999987773222212 2444678999
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+|+|++.+|... .++||+||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||++++
T Consensus 1139 I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1139 IEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred EEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 9999999999643 347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
+|||||+||+||+|+||||.+ +++|++||+|||+|+|+++|.++|+|||++|.|+|.|||.||||++||||||||++||
T Consensus 1218 IIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1218 IIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 999999999999999999985 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g 1125 (1139)
|+||||||++|++||..||++||+.| ++|| ||+||||++||+|||||+|||+|+|+|+|+|++|++++++
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F---------~dcT-VltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEF---------KDCT-VLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDS 1366 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHh---------cCCe-EEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcc
Confidence 99999999999999999999999998 7777 9999999999999999999999999999999999999899
Q ss_pred hHHHHHHHHh
Q 048639 1126 VYSRLYQLQA 1135 (1139)
Q Consensus 1126 ~f~~l~~~~~ 1135 (1139)
.|++++.+..
T Consensus 1367 ~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1367 LFSSLLKEAA 1376 (1381)
T ss_pred hHHHHHHHHH
Confidence 9987776544
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-164 Score=1604.12 Aligned_cols=1120 Identities=30% Similarity=0.490 Sum_probs=939.2
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 4 VKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV 74 (1139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (1139)
....+||.++++++.++ +++|++|||.. ++|++++++++|++.+++.+...+..++..+++++++++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999888 88999999997 789999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 048639 75 ICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 75 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 154 (1139)
+++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..+...+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999989888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAK--------RSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKA 226 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~--------~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 226 (1139)
.+...+.++..++..++.++.+++++|+|++++.+| .+++|.+++++++.+.....+..+.+.+..++.+.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888888889999999999999875 578999998877777666677777888899999999
Q ss_pred HHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHH
Q 048639 227 AGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA 306 (1139)
Q Consensus 227 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~ 306 (1139)
+++|++++++.+++......+...+.. ..|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 354 a~~ri~~ii~~~~~~~~~~~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVENNDDGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHHcCCCCCCCCCCCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999876654221111111222 3799999999998654457999999999999999999999999999999999
Q ss_pred hccCCCccEEEE-CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCC---------------------------
Q 048639 307 RFYDPSNGDILI-DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--------------------------- 358 (1139)
Q Consensus 307 g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--------------------------- 358 (1139)
|+|+|++|+|.+ ||.++.+++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 359 ------------------------------DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 359 ------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+.+++++.++++.+++++++.++|+|++|.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCc-----------------
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDG----------------- 469 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G----------------- 469 (1139)
||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999875 489999999999999889999999986
Q ss_pred ------------------------------EEEEecChhhhhc-cchHHHHHHhhccCCCCCCc-C--cccc--cccccc
Q 048639 470 ------------------------------QVTETGTHHSLLQ-TSDFYNRLFTMQNLRPIDDS-R--TKAS--TVESTS 513 (1139)
Q Consensus 470 ------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~--~~~~--~~~~~~ 513 (1139)
+|+|+|+|+||++ .++.|..+...|........ . .... ......
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 5999999999998 68999999977654321110 0 0000 000000
Q ss_pred cch-hh--hhh-----hcccCch-hhhhhcc-cc-cchhhh------------cccccchhhHHHHhhchhhHHHHHHHH
Q 048639 514 TEQ-QI--SVV-----EQLEEPE-ESKRELS-AS-TGQEEV------------KGKRTTIFFRIWFCLNERELLRLVVGT 570 (1139)
Q Consensus 514 ~~~-~~--~~~-----~~~~~~~-~~~~~~~-~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (1139)
... .. ... ....... ....... .. .+..+. ..+......++ +++..+.+..+++++
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 831 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIV-YREIFSYKKDVTIIA 831 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHH-HHHHHHHHHHHHHHH
Confidence 000 00 000 0000000 0000000 00 000000 00011112222 222333344467777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048639 571 VAAAFSGISKPLFGFFIITIGVAYYDP-QAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLR 649 (1139)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 649 (1139)
+++++.+++.|.++++++.+++..+.. ........|++++++++++..++.+++.+++.+.++++..++|.++|+++++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~ 911 (1466)
T PTZ00265 832 LSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILY 911 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999988866542 1222345677888888889999999999999999999999999999999999
Q ss_pred CCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 650 NEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729 (1139)
Q Consensus 650 ~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~ 729 (1139)
+|++|||++.+++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++........+.
T Consensus 912 ~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 991 (1466)
T PTZ00265 912 QEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARL 991 (1466)
T ss_pred CCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997678999999999999999999999999999999999999999999999998887665544443332221111
Q ss_pred hh--chhhh-------------HHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 730 AQ--GFSGD-------------SAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQG 794 (1139)
Q Consensus 730 ~~--~~~~~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1139)
.. ...+. .++........+.|++.|+++||+|+.|+++.++|.+..+...+...+.....+.+.+
T Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1466)
T PTZ00265 992 TANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWG 1071 (1466)
T ss_pred HHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00000 1223455678999999999999999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 048639 795 FSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAP 874 (1139)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 874 (1139)
+.+.+..+..++++|+|++++..|.++++.++.++.++.+...++..+...++.+..+..+.+|++++++.+++.+..+.
T Consensus 1072 ~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~ 1151 (1466)
T PTZ00265 1072 FSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDN 1151 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCC
Confidence 88888888999999999999999999999998887776666667788889999999999999999999987654322111
Q ss_pred CCCC---CCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----------
Q 048639 875 ESSE---SGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP----------- 940 (1139)
Q Consensus 875 ~~~~---~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p----------- 940 (1139)
.... ++...|.|+|+||+|+||++|+.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1152 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1152 GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred cccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence 1111 12345789999999999977667899999999999999999999999999999999999999
Q ss_pred -------------------------------------------CccEEEECCcccCCCChHHHhhhceEEcccccccccc
Q 048639 941 -------------------------------------------NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS 977 (1139)
Q Consensus 941 -------------------------------------------~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gT 977 (1139)
++|+|+|||+||+++++++||++|+||||||+||+||
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gT 1311 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccccc
Confidence 6999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCH
Q 048639 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~ 1057 (1139)
|||||.+|.|+++|+++++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||+
T Consensus 1312 IreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1312 IYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC----CEEE-EecChhHHhhccCChHHHHHH
Q 048639 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK----GEVV-EMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1058 ~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~----G~iv-e~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
+||+.|+++|++... .+++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++++|.|++|++
T Consensus 1392 ~sE~~I~~~L~~~~~--------~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKD--------KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred HHHHHHHHHHHHHhc--------cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 999999999997520 123459999999999999999999999 9954 999999999745899999998
Q ss_pred HH
Q 048639 1133 LQ 1134 (1139)
Q Consensus 1133 ~~ 1134 (1139)
.|
T Consensus 1464 ~~ 1465 (1466)
T PTZ00265 1464 LA 1465 (1466)
T ss_pred hc
Confidence 76
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-158 Score=1568.05 Aligned_cols=1072 Identities=20% Similarity=0.282 Sum_probs=820.0
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|..++... ++|+++|++++|++++++++. .+..++..++.+++++++++..-...++++++++++++++..++.+
T Consensus 385 L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~ 462 (1622)
T PLN03130 385 LRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIIS 462 (1622)
T ss_pred hcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899886 899999999999999999874 4566666666655555544432222233444444555667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
++++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.++++.+..++.....++...+..... ..+.++
T Consensus 463 ~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~v~~~ 540 (1622)
T PLN03130 463 KMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP--VLVTVV 540 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999988877777666665444433222 134456
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++||.++++.++...... . ......+.|+++
T Consensus 541 ~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~-~~~~~~~~I~~~ 618 (1622)
T PLN03130 541 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-P-PLEPGLPAISIK 618 (1622)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-C-cccCCCCceEEE
Confidence 78899999999999999999988888899999999999999999999999999997654321111 1 111112469999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc-cEEEECCccCCCCCHHHHhcceEEEe
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-GDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+ |++|+||+
T Consensus 619 nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~ 685 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVP 685 (1622)
T ss_pred eeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEc
Confidence 99999985444679999999999999999999999999999999999999999 99986 45899999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
|+||||++||||||+||.| .+++++.++++.++++++++.||+|++|.+||+|.+|||||||||+||||+|++|+||||
T Consensus 686 Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 686 QVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred CccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999987 478899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHH-HHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhccCCC
Q 048639 420 DEATSALDSESEKLV-QEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRP 498 (1139)
Q Consensus 420 DEpts~LD~~~~~~i-~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 498 (1139)
||||||||+++++.+ .++++...+++|+|+|||+++.+..||+|++|++|+|+++|+|++++++.+.|.+++..+...+
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~ 844 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKME 844 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccc
Confidence 999999999998876 4677777789999999999999999999999999999999999999988888988876543211
Q ss_pred CCCcCccccccc-ccccchhh-h-hhhcccCchhhhhh-cccccchhhhcccccchhhHHHHhhchh-h-HHHHHHHHHH
Q 048639 499 IDDSRTKASTVE-STSTEQQI-S-VVEQLEEPEESKRE-LSASTGQEEVKGKRTTIFFRIWFCLNER-E-LLRLVVGTVA 572 (1139)
Q Consensus 499 ~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 572 (1139)
............ ........ . .............+ ......+++....+... +..|..|.+. + ++.+++.+++
T Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~-~~vy~~Y~~~~g~~~~~~~~~~~ 923 (1622)
T PLN03130 845 EYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVS-WKVLERYKNALGGAWVVMILFLC 923 (1622)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccC-HHHHHHHHHHhccHHHHHHHHHH
Confidence 110000000000 00000000 0 00000000000000 00000011111222223 3333444333 2 2222222222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 048639 573 AAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEI 652 (1139)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~ 652 (1139)
..+..+......+|+..|.+.... ......+|.++|++++++..++.+++.+++...+.+++.++|.+++++++++|+
T Consensus 924 ~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~ 1001 (1622)
T PLN03130 924 YVLTEVFRVSSSTWLSEWTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPM 1001 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 222222222333444333322111 112245677788889999999999999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---Hh
Q 048639 653 AWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQA---KS 729 (1139)
Q Consensus 653 ~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~---~~ 729 (1139)
+||| .+|+|+++|||++|++.+|..++..+..++..++.+++.++++++++|...+ +++|+.+++..++. +.
T Consensus 1002 ~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~ 1076 (1622)
T PLN03130 1002 SFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAYLYYQST 1076 (1622)
T ss_pred HHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999 7899999999999999999999999999999999988888888777764333 33444333333322 22
Q ss_pred hhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALW 809 (1139)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1139)
.+...+......++..+++.|+++|++|||+|+.++++.+++.+..+...+....... ...|.++... .+..++.++
T Consensus 1077 ~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~wl~~~l~--~~~~~~i~~ 1153 (1622)
T PLN03130 1077 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS-SNRWLAIRLE--TLGGLMIWL 1153 (1622)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHH
Confidence 2222333333446678999999999999999999999988888887776654433221 1222222211 111222222
Q ss_pred HHHHHHhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC--CCCCCC
Q 048639 810 YTAVLIDKKQ-AT-----FRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE--SSESGR 881 (1139)
Q Consensus 810 ~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~ 881 (1139)
.+...+..+. .. .+.+...+.+.......+..+...+..++..+.+++|+.++++.++|.+...+. ..+.++
T Consensus 1154 ~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp 1233 (1622)
T PLN03130 1154 TASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWP 1233 (1622)
T ss_pred HHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCC
Confidence 2223233321 11 122222233333444555666677778899999999999999876654321111 111234
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|
T Consensus 1234 ~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR 1312 (1622)
T PLN03130 1234 SSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312 (1622)
T ss_pred CCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHH
Confidence 56899999999999632 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++|++|||||+||+||||+||+|++ +++|+|+|+||++++++++|.++|+||||+|||+|.+|||||||||||||||+|
T Consensus 1313 ~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1313 KVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred hccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999999986 689999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||++||+.||++|++.+ ++|| +|+||||++|+++||||+|||+|+|+|+|+|+||++
T Consensus 1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~---------~~~T-vI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1392 RSKILVLDEATAAVDVRTDALIQKTIREEF---------KSCT-MLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC---------CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999876 5555 999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHHh
Q 048639 1122 ESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1122 ~~~g~f~~l~~~~~ 1135 (1139)
+++|.|++|++.+.
T Consensus 1462 ~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1462 NEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCCCHHHHHHHHcC
Confidence 76799999997654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-157 Score=1559.02 Aligned_cols=1071 Identities=19% Similarity=0.288 Sum_probs=817.6
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSL---LIFLVVPMILVIGAT 97 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l---~~l~~~~~~~~~~~~ 97 (1139)
++.|..++++. ++|+++|++++|++.+++.+ ..+..++..++.+++++++++ +.+++ ++++++++++++..+
T Consensus 385 l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~~pl~~~ 459 (1495)
T PLN03232 385 LRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLLIPLQTL 459 (1495)
T ss_pred hcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHH
Confidence 78888888886 89999999999999999986 445555555555444443332 22222 222233344456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 98 YTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWA 177 (1139)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1139)
+.++.++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+...+.....++...+..... ..+
T Consensus 460 ~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~ 537 (1495)
T PLN03232 460 IVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP--VVV 537 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 889999999999999999999999999999999999999999999999999998888877766655443332222 223
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccE
Q 048639 178 LIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNI 257 (1139)
Q Consensus 178 ~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i 257 (1139)
.++++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++.+||.++++.+++..... .......+.|
T Consensus 538 ~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I 615 (1495)
T PLN03232 538 TLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAI 615 (1495)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcE
Confidence 34678999999999999999999999999999999999999999999999999999998654321111 1111123469
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|+|
T Consensus 616 ~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iay 683 (1495)
T PLN03232 616 SIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAY 683 (1495)
T ss_pred EEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEE
Confidence 999999999854456799999999999999999999999999999999999999998763 24679999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 338 VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 338 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
|+|+||||++||||||+||++ .+++++.++++.++++++++.+|+|++|.+||+|.+|||||||||+||||+|++|+||
T Consensus 684 v~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~Il 762 (1495)
T PLN03232 684 VPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIY 762 (1495)
T ss_pred EcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999985 6788999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHH-HHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhccC
Q 048639 418 LLDEATSALDSESEKLVQ-EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNL 496 (1139)
Q Consensus 418 llDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 496 (1139)
||||||||||+++++.+. +++....+++|+|+||||++.++.||+|++|++|+|+++|+|++++++++.|.+++..+..
T Consensus 763 LLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~ 842 (1495)
T PLN03232 763 IFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGK 842 (1495)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccc
Confidence 999999999999988775 4566667899999999999999999999999999999999999999988999988865442
Q ss_pred CCCCCcCcc-cccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchh-h-HHHHHHHHHHH
Q 048639 497 RPIDDSRTK-ASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNER-E-LLRLVVGTVAA 573 (1139)
Q Consensus 497 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 573 (1139)
.+...+... ..................................++++...+... +..|.+|.+. + ++.+.+.+++.
T Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~-~~vy~~y~~~~~~~~~~~~~~~~~ 921 (1495)
T PLN03232 843 MDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIIS-WNVLMRYNKAVGGLWVVMILLVCY 921 (1495)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhHHHHhcCccc-HHHHHHHHHHcCcHHHHHHHHHHH
Confidence 111100000 000000000000000000000000000000000011111222233 3334444443 2 22222222222
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q 048639 574 AFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIA 653 (1139)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ 653 (1139)
.+..+......+|+..|.... ........+|.++|++++++..++.+++.+++...+.+++.++|++++++++++|++
T Consensus 922 ~~~~~~~~~~~~wl~~w~~~~--~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ 999 (1495)
T PLN03232 922 LTTEVLRVSSSTWLSIWTDQS--TPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPML 999 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence 222222222223333222210 001123457888999999999999999999999999999999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---Hhh
Q 048639 654 WFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQA---KSA 730 (1139)
Q Consensus 654 ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~---~~~ 730 (1139)
||+ .+|+|+++|||++|++.+|..++..+..++..++.++++++++++.++...+ +++|+.+++...+. +..
T Consensus 1000 ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 1074 (1495)
T PLN03232 1000 FFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTS 1074 (1495)
T ss_pred eeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999 7899999999999999999999999999999888888887777766653332 33344333332222 222
Q ss_pred hchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 731 QGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWY 810 (1139)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1139)
+...+......++..+++.|+++|+.|||+|+.++++.+++.+..+...+....... ...|..+.. ..+..++.++.
T Consensus 1075 r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~wl~~~~--~~~~~~~~~~~ 1151 (1495)
T PLN03232 1075 REVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTS-SNRWLTIRL--ETLGGVMIWLT 1151 (1495)
T ss_pred HHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHH
Confidence 333334444556778999999999999999999999988888887776665433221 122222221 11222222222
Q ss_pred HHHHHh-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC--CCCCCCc
Q 048639 811 TAVLID-KKQAT-----FRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE--SSESGRI 882 (1139)
Q Consensus 811 ~~~l~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~--~~~~~~~ 882 (1139)
+...+. .+.+. .+.+..++.+......++..+...+..++.++.+++|+.++++.++|.+..... .++.++.
T Consensus 1152 ~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~ 1231 (1495)
T PLN03232 1152 ATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPS 1231 (1495)
T ss_pred HHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCC
Confidence 333333 23221 111222333344455667788888999999999999999999877654321111 1112345
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.|.|+|+||+|+|+.+ .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|.|||+|+++++++++|+
T Consensus 1232 ~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 6889999999999532 347999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+|++|||||+||+|||||||+|++ +++|+|+|+|+++++++++|.++|+||||+|||+|.+|||||||||||||||+|+
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999985 6899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
|+|||||||||+||++||+.||++|++.+ +++| +|+||||++|+++||||+|||+|+|+|+|+|+||+++
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~~---------~~~T-vI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREEF---------KSCT-MLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHc---------CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999876 4555 9999999999999999999999999999999999988
Q ss_pred cCChHHHHHHHHhh
Q 048639 1123 SQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1123 ~~g~f~~l~~~~~~ 1136 (1139)
++|.|++|++.+..
T Consensus 1460 ~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1460 DTSAFFRMVHSTGP 1473 (1495)
T ss_pred CCCHHHHHHHHhCh
Confidence 66799999987643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-153 Score=1518.57 Aligned_cols=1076 Identities=20% Similarity=0.281 Sum_probs=836.6
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|..+++.. ++|+++|++++|++++.+.. ..+..++..++.+++++++++..-...++++++++++++++..++.+
T Consensus 402 L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~ 479 (1522)
T TIGR00957 402 LVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAM 479 (1522)
T ss_pred HhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999886 89999999999999999865 34555666655555555444332222445666667777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
++++..++.++..+++.+.+.|.++||++||+|+||+.+.+++++.++++.+..++...+..+......... ..+.++
T Consensus 480 ~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 557 (1522)
T TIGR00957 480 KTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP--FLVALI 557 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999988877776666554333222111 122233
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCcccc-CCCccE
Q 048639 181 WVGAVVVTA--KRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELE-KIDGNI 257 (1139)
Q Consensus 181 ~~g~~~v~~--~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~i 257 (1139)
.++.|.+.. +.++++.+|+.+.++..+..|+..++..+..+.++..+.+||.++++.++............ ...+.|
T Consensus 558 ~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 637 (1522)
T TIGR00957 558 TFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSI 637 (1522)
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcE
Confidence 455666663 56899999998888888888999999999999999999999999997654321110001111 112369
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 999999999743 35799999999999999999999999999999999999999999999987 6999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 338 VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 338 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
|+|+||+|++||+|||.+|.+ .++++..++++.+++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999975 3456666777777888899999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHH---HcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 418 LLDEATSALDSESEKLVQEALER---AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 418 llDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+++++|+++++.++.+.|.+++..+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 99999999999999999988853 456899999999999999999999999999999999999998888888887543
Q ss_pred cCCCCCCc-Cc-------cccccc----cc--c---cchhhhh----hhcc-cC------chhh-hh-hcc-c--ccchh
Q 048639 495 NLRPIDDS-RT-------KASTVE----ST--S---TEQQISV----VEQL-EE------PEES-KR-ELS-A--STGQE 541 (1139)
Q Consensus 495 ~~~~~~~~-~~-------~~~~~~----~~--~---~~~~~~~----~~~~-~~------~~~~-~~-~~~-~--~~~~~ 541 (1139)
...+..+. .. ...... .. . ....... .... .. .... .. +.. . ...++
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1522)
T TIGR00957 863 APDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEA 942 (1522)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHH
Confidence 22111000 00 000000 00 0 0000000 0000 00 0000 00 000 0 00011
Q ss_pred hhcccccchhhHHHHhhchh-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 048639 542 EVKGKRTTIFFRIWFCLNER-ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFT 620 (1139)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1139)
+....+...+ ..|++|.+. ++...++.+++..+..+......+|+..|.+............+|..+|++++++..++
T Consensus 943 e~~~~g~v~~-~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~ 1021 (1522)
T TIGR00957 943 DKAQTGQVEL-SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFA 1021 (1522)
T ss_pred HHHhcCcccH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHH
Confidence 1111222223 333444332 33322222222222222333334444443332111111122345667888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 621 HTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIV 700 (1139)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 700 (1139)
.++..+++...+.+++.++|++++++++++|++||| .+|+|+++|||++|++.+|..++..+..++..++.+++++++
T Consensus 1022 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1022 VFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999 789999999999999999999999999999999999999888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHH
Q 048639 701 SLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKR 780 (1139)
Q Consensus 701 ~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~ 780 (1139)
+++.+|.++++++++++++++...++.+..+...+......++..+++.|+++|++|||+|++++++.+++.+..+...+
T Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~ 1179 (1522)
T TIGR00957 1100 ILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQK 1179 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88888876655555544444444444444444444445556778999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 781 SSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLID-KKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPA 859 (1139)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 859 (1139)
..........+.......+ ..+++++++...+. .+.+++|.+.+++.+......++..+...+..++.++.+++|+
T Consensus 1180 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi 1256 (1522)
T TIGR00957 1180 AYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERL 1256 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655433332222222222 22233344444443 5778999988888888888899999999999999999999999
Q ss_pred HHHhccCCCCCCCCCC--CCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 860 FEILDRKTEIEPDAPE--SSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 860 ~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.++.+.+++.+...+. .++.++..|.|+|+||+|+|+++ ..+||+|+||+|+||||||||||||||||||+++|+|+
T Consensus 1257 ~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1257 KEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999776654311111 11122456899999999999754 24799999999999999999999999999999999999
Q ss_pred ccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccc
Q 048639 938 YDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017 (1139)
Q Consensus 938 ~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~ 1017 (1139)
|+|++|+|.|||+||+++++++||++|++|||||+||+||||+||+|+. +++|+|+|+|+++++++++|.++|+||||+
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999999764 699999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh
Q 048639 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1018 v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
|||+|.+|||||||||||||||+|+|||||||||||+||++||+.||++|++.+ +++| ||+||||++|++
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~---------~~~T-vI~IAHRl~ti~ 1484 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF---------EDCT-VLTIAHRLNTIM 1484 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---------CCCE-EEEEecCHHHHH
Confidence 999999999999999999999999999999999999999999999999999876 5555 999999999999
Q ss_pred cCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHH
Q 048639 1098 NSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134 (1139)
Q Consensus 1098 ~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~ 1134 (1139)
+||||+|||+|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1485 ~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1485 DYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred hCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 9999999999999999999999987 79999999863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-146 Score=1451.98 Aligned_cols=1075 Identities=21% Similarity=0.276 Sum_probs=820.8
Q ss_pred HcCCcccccc-cCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDT-DLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~-~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 99 (1139)
++.+...+.. ..++|+++|++++|++++.+++.. +..++..++.+++++++++.+..+.++++++++++++++..++.
T Consensus 329 l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~ 407 (1560)
T PTZ00243 329 FTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407 (1560)
T ss_pred HhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655541 236899999999999999999854 55666777777776666665544477888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
++..+..++.++..|++.+.+.|.++|||+||+++||+.+.+++++.++++.+..++......+...+......+.. +
T Consensus 408 k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~--~ 485 (1560)
T PTZ00243 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMI--A 485 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999888877777665555444333332 2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc----c--C--------C
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRIS----Y--S--------S 245 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~----~--~--------~ 245 (1139)
+.+++|.+.++.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.++|+.++... . . .
T Consensus 486 ~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 565 (1560)
T PTZ00243 486 VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHS 565 (1560)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccc
Confidence 346778888999999999999999999999999999999999999999999999997543100 0 0 0
Q ss_pred C--C---------------cc---------------------------ccCCCccEEEEeEEEECCCC------------
Q 048639 246 K--G---------------KE---------------------------LEKIDGNIDIRDVCFAYPSR------------ 269 (1139)
Q Consensus 246 ~--~---------------~~---------------------------~~~~~~~i~~~~v~~~y~~~------------ 269 (1139)
. . .+ .....+.+.++|+++.++..
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1560)
T PTZ00243 566 TACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGG 645 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 00011246777877765310
Q ss_pred -------------------------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC
Q 048639 270 -------------------------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 270 -------------------------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~ 324 (1139)
.++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----- 720 (1560)
T PTZ00243 646 GHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----- 720 (1560)
T ss_pred cccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----
Confidence 12458999999999999999999999999999999999999999999874
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 325 ~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
++|+||+|+||+|++||+|||.++.+. +.+++.++++.++++++++.+|+|++|.+|++|.+|||||||||
T Consensus 721 --------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv 791 (1560)
T PTZ00243 721 --------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV 791 (1560)
T ss_pred --------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH
Confidence 479999999999999999999998642 44556677777888899999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQE-ALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|||||+++|+|+|||||||+||+++++.+.+ ++....+++|+|+|||+++.+..||+|++|++|+++++|+++++++.
T Consensus 792 aLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 792 SLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999998877765 45455578999999999999989999999999999999999999875
Q ss_pred chHHHHHHhhccCCCCC-CcCcccccccccc-cc---hhhhhhhcccCc-hhh---hhhcc-cccchhhhcccccchhhH
Q 048639 484 SDFYNRLFTMQNLRPID-DSRTKASTVESTS-TE---QQISVVEQLEEP-EES---KRELS-ASTGQEEVKGKRTTIFFR 553 (1139)
Q Consensus 484 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~-~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 553 (1139)
+.|..+.......... +.....+...... .. ............ ... ..+.. ....+++....+...+..
T Consensus 872 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~ 950 (1560)
T PTZ00243 872 -SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWST 950 (1560)
T ss_pred -hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhcCcccHHH
Confidence 4566665432211110 0000000000000 00 000000000000 000 00000 000011111122233333
Q ss_pred HHHhhchh-h-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 554 IWFCLNER-E-LLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVV 631 (1139)
Q Consensus 554 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1139)
+ ..|.+. + +..+++.+++.++..+......+|+..|.. .........|+.+|+++.++..+..+++.+.....
T Consensus 951 y-~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~----~~~~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~ 1025 (1560)
T PTZ00243 951 Y-VAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST----RSFKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEA 1025 (1560)
T ss_pred H-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333332 1 111111111111222222222233332222 11112234567777777777777777777777778
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048639 632 GEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALV 711 (1139)
Q Consensus 632 ~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv 711 (1139)
+.+.+.++|+++|++++++|++||| .+++|+++|||++|++.+|..++..+..++..++.++++++++++.+|.+.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~- 1102 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV- 1102 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888999999999999999999999 7899999999999999999999999999999999999998888888874433
Q ss_pred HHHHHHHHHHHHHH---HHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 712 AWAVMPCHFIGGLI---QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIK 788 (1139)
Q Consensus 712 ~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1139)
+++|+.+++..+ +.+..+...+......++..+++.|+++|+.|||+|+.++.+.+++.+..+...+........
T Consensus 1103 --~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~ 1180 (1560)
T PTZ00243 1103 --ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVA 1180 (1560)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333 333333333334445667899999999999999999999999999999999988877665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 789 YGVIQGFSLCLWNIAHAVALWYTAVL--IDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRK 866 (1139)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~ 866 (1139)
..+.......+..+..+++.+++... ...+..+++.+..++.+......++..+...+..++.++.+++|+.++++..
T Consensus 1181 ~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~ 1260 (1560)
T PTZ00243 1181 NRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43333333333333333333333332 2334567777767777777778888999999999999999999999999654
Q ss_pred CCCCCCC-------------------------CCCC----CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEE
Q 048639 867 TEIEPDA-------------------------PESS----ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKV 917 (1139)
Q Consensus 867 ~~~~~~~-------------------------~~~~----~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~v 917 (1139)
++++... +... +.++..|.|+|+||+|+|+++ ..+||+||||+|+|||||
T Consensus 1261 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekV 1339 (1560)
T PTZ00243 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKV 1339 (1560)
T ss_pred CccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEE
Confidence 3321000 0000 111245889999999999753 346999999999999999
Q ss_pred EEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHH
Q 048639 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEV 997 (1139)
Q Consensus 918 aIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~a 997 (1139)
|||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||+++. +++|+|+|+|
T Consensus 1340 aIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~A 1418 (1560)
T PTZ00243 1340 GIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAA 1418 (1560)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999974 7899999999
Q ss_pred HHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC-CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCC
Q 048639 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR-PAIMLLDEATSALDAESERVIVSALEALNPKSSS 1076 (1139)
Q Consensus 998 l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~ 1076 (1139)
|++++++++|.++|+||||.|||+|.||||||||||||||||+++ |+|||||||||+||++||+.|+++|++.+
T Consensus 1419 l~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~----- 1493 (1560)
T PTZ00243 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF----- 1493 (1560)
T ss_pred HHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-----
Confidence 999999999999999999999999999999999999999999996 89999999999999999999999999876
Q ss_pred ccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1077 CGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1077 ~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+++| +|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.|++|++.+.
T Consensus 1494 ----~~~T-vI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1494 ----SAYT-VITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred ----CCCE-EEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 4555 99999999999999999999999999999999999877899999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-145 Score=1436.02 Aligned_cols=1072 Identities=19% Similarity=0.237 Sum_probs=807.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.+...+++. ++|+++|++++|++++.+++... ..++..++.++++++++++...+.+++.++++++++++..++++
T Consensus 166 L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~ 243 (1490)
T TIGR01271 166 LKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQ 243 (1490)
T ss_pred HhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888875 89999999999999999987654 44555556555555555554444678888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
++.+..++.++..+++.+.+.|.++|||+||+|+||+.+.+++++.++++.+...+...+..+...+..+.. ..+.++
T Consensus 244 ~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 321 (1490)
T TIGR01271 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999888887776644443333222 233445
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALT-YAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDI 259 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 259 (1139)
.+++|.+.++ ++++.+|+++.++..+..|+. .++..+..+.++.++++||.++|..++..... .. .....+++
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~--~~~~~i~~ 395 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YN--LTTTEVEM 395 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---cc--CCCCceEE
Confidence 6677776654 689999999888887777874 68888999999999999999999865432111 00 11235999
Q ss_pred EeEEEECCCC-------------------------------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 260 RDVCFAYPSR-------------------------------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 260 ~~v~~~y~~~-------------------------------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+|++|.|+.. ..+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 9999999531 013689999999999999999999999999999999999
Q ss_pred cCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc
Q 048639 309 YDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388 (1139)
Q Consensus 309 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 388 (1139)
++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+.++..++++.+++.+++..+|+|++|.
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~ 541 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV 541 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence 999999999998 5999999999999999999999964 33444556666677888999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHcCCCeEEEEecCccchhccCEEEEEe
Q 048639 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE-ALERAMQGRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 389 i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|++|+
T Consensus 542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999887 5677777999999999999998899999999
Q ss_pred CcEEEEecChhhhhccchHHHHHHhhccC-C----C---------------C--C-----CcC--c---ccccc--cc--
Q 048639 468 DGQVTETGTHHSLLQTSDFYNRLFTMQNL-R----P---------------I--D-----DSR--T---KASTV--ES-- 511 (1139)
Q Consensus 468 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~-~----~---------------~--~-----~~~--~---~~~~~--~~-- 511 (1139)
+|++++.|+++++.+..+.|...+..... . . . . ++. . ..... +.
T Consensus 622 ~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1490)
T TIGR01271 622 EGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRK 701 (1490)
T ss_pred CCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998776666665531100 0 0 0 0 000 0 00000 00
Q ss_pred --------------------------cccchhhhhhh-------cc------cCc------------------------h
Q 048639 512 --------------------------TSTEQQISVVE-------QL------EEP------------------------E 528 (1139)
Q Consensus 512 --------------------------~~~~~~~~~~~-------~~------~~~------------------------~ 528 (1139)
...+....... .. ..+ .
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1490)
T TIGR01271 702 QSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTH 781 (1490)
T ss_pred ccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 00000000000 00 000 0
Q ss_pred -------h------hh------------h-------h-ccc-----ccc----------hhhhcccccchhhHHHHhhch
Q 048639 529 -------E------SK------------R-------E-LSA-----STG----------QEEVKGKRTTIFFRIWFCLNE 560 (1139)
Q Consensus 529 -------~------~~------------~-------~-~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~ 560 (1139)
. .. . . ... ..+ .+++....+...+..|++|.+
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~ 861 (1490)
T TIGR01271 782 SNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYIT 861 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHH
Confidence 0 00 0 0 000 000 000001111223444454443
Q ss_pred h-h-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--cC-ch-h-------------hhhHHHH-HHHHHHHHHHHHHH
Q 048639 561 R-E-LLRLVVGTVAAAFSGISKPLFGFFIITIGVAY--YD-PQ-A-------------KQEVGWY-SLAFSLVGLFSLFT 620 (1139)
Q Consensus 561 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~-------------~~~~~~~-~~~~~~~~~~~~~~ 620 (1139)
. + +..+++.+++.++..++.....+|+..|.... +. .. . .....+| ..+|++++++..++
T Consensus 862 ~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1490)
T TIGR01271 862 TNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLAL 941 (1490)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 2 2 22222222222233333333344443332100 00 00 0 0011223 44455555556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 621 HTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIV 700 (1139)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 700 (1139)
.+++.+++...+.+++.++|.+++++++++|++||+ .+|+|+++|||++|++.+|+.++..+..++..++.+++.+++
T Consensus 942 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 942 GFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999 789999999999999999999999999999999999999888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHH
Q 048639 701 SLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKR 780 (1139)
Q Consensus 701 ~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~ 780 (1139)
+++.+|.+.++++++++++++...++.+..+...+......++..+++.|++.|+.|||+|++++.+.+++.+..+...+
T Consensus 1020 i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~ 1099 (1490)
T TIGR01271 1020 VSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTA 1099 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88888876543333322222222333333333333444455678899999999999999999999999999999987665
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 781 SSRKESIKYGVIQGFSL-CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPA 859 (1139)
Q Consensus 781 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 859 (1139)
.......... |..... .+..+....+.++ .+.......+.+..++.+......++..+...+..++..+.+++|+
T Consensus 1100 ~~~~~~~~~~-wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271 1100 NWFLYLSTLR-WFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443332222 222222 1111111111111 1111223344444444455555666777888888999999999999
Q ss_pred HHHhccCCCCCCCCC----------------CCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCC
Q 048639 860 FEILDRKTEIEPDAP----------------ESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923 (1139)
Q Consensus 860 ~~~~~~~~~~~~~~~----------------~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~s 923 (1139)
.++.+.+++...... ..++.++..|.|+|+||+|+|+.. .+++|+|+||+|+|||||||||||
T Consensus 1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrS 1254 (1490)
T TIGR01271 1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRT 1254 (1490)
T ss_pred HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCC
Confidence 999977655321110 001113456899999999999753 457999999999999999999999
Q ss_pred CCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCc
Q 048639 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003 (1139)
Q Consensus 924 GSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l 1003 (1139)
|||||||+++|+|+++ .+|+|+|||+||++++++.+|++|++|||||+||+||||+||+|+. .++|+++|+||+++++
T Consensus 1255 GsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271 1255 GSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred CCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCC
Confidence 9999999999999997 7999999999999999999999999999999999999999999874 6899999999999999
Q ss_pred hHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCC
Q 048639 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083 (1139)
Q Consensus 1004 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~ 1083 (1139)
++++.++|+||||+|+|+|.+|||||||||||||||||+|+|||||||||+||++||+.|+++|++.+ +++
T Consensus 1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~---------~~~ 1403 (1490)
T TIGR01271 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF---------SNC 1403 (1490)
T ss_pred HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999876 555
Q ss_pred eEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1084 tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
| ||+||||++++.+||||+|||+|+|+|+|+|++|+++ +|.|++|++++..
T Consensus 1404 T-vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1404 T-VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred E-EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 5 9999999999999999999999999999999999975 8999999987653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-108 Score=946.97 Aligned_cols=573 Identities=37% Similarity=0.561 Sum_probs=536.8
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD-PQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFF 628 (1139)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1139)
.++++ +.+.++.++.+..+.++..+........+.+.+++++.++. .+........+...+++.+...++.+++.+++
T Consensus 134 ~~~rl-~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRL-LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHH-HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566 66788888888888888888877787888888888877665 33333344466777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048639 629 GVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRM 708 (1139)
Q Consensus 629 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 708 (1139)
...+++...++|..+|+++++++++||| .|.+|++++|++.|...+.+.++..+...+.+.+..++++.+++..+|.+
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 709 ALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIK 788 (1139)
Q Consensus 709 ~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1139)
+++.++.+|++++...++.++.++++++.++..+++.....|.+++++|||+|+.|+...++|.+.++...+..++....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 048639 789 YGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTE 868 (1139)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 868 (1139)
...+++.......+....++|||+.++..|.++.|++..++++......++..+...+.++.++.++.+|++++++++|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 869 IEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 869 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
.+++ .... |....|.|+|+||+|+||+||+.|||+|+||+|+|||.||+||||||||||++++|.|||+|++|+|++|
T Consensus 451 i~~~-G~~~-p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT-GTLA-PDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC-Cccc-cccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7655 2211 2257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 949 GKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 949 G~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
|+||++++.++||++||+|.|||+||+|||+|||.||.+.++||||.+|+++++.|+||.++|+||||.|||+|.+||||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCC
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
|||||||||||+|||+||||||||||||.++|..||++|.+.. +++ |||+|||||+||++||+|+|+|+|
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~---------~~r-TVlvIAHRLSTV~~Ad~Ivvi~~G 678 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM---------QGR-TVLVIAHRLSTVRHADQIVVIDKG 678 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh---------cCC-eEEEEehhhhHhhhccEEEEEcCC
Confidence 9999999999999999999999999999999999999998765 444 599999999999999999999999
Q ss_pred EEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1109 EVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
+|+|.|+|+||+++++|.|++|++.|...
T Consensus 679 ~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 679 RVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred eEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 99999999999999889999999999765
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-97 Score=860.12 Aligned_cols=491 Identities=38% Similarity=0.610 Sum_probs=471.1
Q ss_pred HHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 5 KLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVI 75 (1139)
Q Consensus 5 ~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 75 (1139)
...+|+.++++|++.| ++++++|||.+ .+|+++||++.|+..+.+.+...+...+.+.+..++++++|++
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~ 285 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFS 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3467899999999998 89999999998 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Q 048639 76 CCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISR 155 (1139)
Q Consensus 76 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 155 (1139)
++|+++++.++.+|+++.+..+++++.++.+++.|+..++.+...+|.+++|||||+|+.|+.+.++|.+..++..+..+
T Consensus 286 ~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~ 365 (716)
T KOG0058|consen 286 LSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSK 365 (716)
T ss_pred hhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 156 GEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVI 235 (1139)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l 235 (1139)
|.....+.+.....+..++..+.++++|++++..|.+|.|.+.+|++|......++..+...+..++++..|.+|++|++
T Consensus 366 k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 366 KEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 99988889888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccE
Q 048639 236 QRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315 (1139)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 315 (1139)
+.+|..+.. ....+....+.|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||++++|.++|+|++|+
T Consensus 446 dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 446 DRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred ccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 999987544 2222235678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCC
Q 048639 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQ 395 (1139)
Q Consensus 316 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~ 395 (1139)
|.+||+||++++..+||++||+|.|||.||++||+|||.||.+.+++|++..|++++++|+||..+|+||||.+||+|..
T Consensus 525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEec
Q 048639 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475 (1139)
Q Consensus 396 LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 475 (1139)
|||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+||++++++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhccc-hHHHHHHhhccCC
Q 048639 476 THHSLLQTS-DFYNRLFTMQNLR 497 (1139)
Q Consensus 476 ~~~~l~~~~-~~~~~~~~~~~~~ 497 (1139)
+|+||+++. +.|.++.+.|...
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhccc
Confidence 999999987 8999999877643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-95 Score=886.44 Aligned_cols=575 Identities=38% Similarity=0.617 Sum_probs=535.7
Q ss_pred chhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 549 TIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEVGWYSLAFSLVGLFSLFTHTLQH 625 (1139)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1139)
..+..++.+..+..+..+.+|.+.+.+.++..|++..+++...+.+..... ......+++.|+.+++..++..+++.
T Consensus 13 ~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~ 92 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQV 92 (1228)
T ss_pred cchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444455678888999999999999999999999988877654221 13455688889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 626 YFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVD 705 (1139)
Q Consensus 626 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 705 (1139)
.++.+.++|...++|.+.++.++|++++|||. +..|++..|+++|++.+++.+++.+..+++.+.++++++++.|+..
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~--~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~ 170 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT--NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYG 170 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec--ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999994 5569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 048639 706 WRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785 (1139)
Q Consensus 706 ~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1139)
|+++++++.+.|+..+...+..+...+.+.+.+...++..+...|++.+++||.+|+.|+...++|.+.++...+...+.
T Consensus 171 W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~ 250 (1228)
T KOG0055|consen 171 WKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKK 250 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048639 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDR 865 (1139)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~ 865 (1139)
..+.+...++..++.+..+++.+|||..++..+..++|.++.++..+......+++....+..+..+..++.++++.+++
T Consensus 251 g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~ 330 (1228)
T KOG0055|consen 251 GLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDR 330 (1228)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcC
Confidence 99999999999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 866 KTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
.|+.++...........+|.|+|+||+|+||+||+.++|+|+||+|++||.|||||+|||||||++++|.|||+|++|+|
T Consensus 331 ~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V 410 (1228)
T KOG0055|consen 331 KPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV 410 (1228)
T ss_pred CCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE
Confidence 88877654223333447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCC
Q 048639 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025 (1139)
Q Consensus 946 ~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1025 (1139)
+|||.|+++++.++||++||+|.|||+||++||+|||.||+|++|++++.+|++.++.++||.++|+||||.+||+|.+|
T Consensus 411 ~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qL 490 (1228)
T KOG0055|consen 411 LIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQL 490 (1228)
T ss_pred EEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||||||||||||+|+|+|||||||||+||+++|+.||++|++.. +++| .|+|||||+||+++|+|+||
T Consensus 491 SGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~---------~grT-TivVaHRLStIrnaD~I~v~ 560 (1228)
T KOG0055|consen 491 SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS---------KGRT-TIVVAHRLSTIRNADKIAVM 560 (1228)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh---------cCCe-EEEEeeehhhhhccCEEEEE
Confidence 9999999999999999999999999999999999999999999875 5665 89999999999999999999
Q ss_pred eCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1106 DKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
++|+|||.|+|+||++.+ |.|++|++.|..
T Consensus 561 ~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDELIALG-GIYSSLVRLQEL 590 (1228)
T ss_pred ECCEEEEecCHHHHHhcc-chHHHHHHHHhh
Confidence 999999999999999985 999999998853
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-92 Score=852.55 Aligned_cols=553 Identities=33% Similarity=0.538 Sum_probs=504.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTL 643 (1139)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 643 (1139)
..+++..++..+.++..|++..++. +..........+......+++++++..++.+++.+.+.+.+.+....+-.++
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~vi---D~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~ 233 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVI---DKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRF 233 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444445555555666666554443 3333233344555667778888899999999999999999999999999999
Q ss_pred HHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048639 644 YTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGG 723 (1139)
Q Consensus 644 ~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~ 723 (1139)
|+|++++|++||. .+++|++++|+ +|.+.+++++.......+..+..+++.++++++++|.+++++++.+|++++..
T Consensus 234 ~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~ 310 (709)
T COG2274 234 FRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310 (709)
T ss_pred HHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 67899999998 68999999999888888888888888999999999999999999999999999
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 724 LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803 (1139)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1139)
.+..+..++..++..+..++.++++.|++.|++|||+.+.|.++.++|++...+..+...+..........+...+..+.
T Consensus 311 ~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 390 (709)
T COG2274 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLS 390 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcc
Q 048639 804 HAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIK 883 (1139)
Q Consensus 804 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1139)
.++++|+|++++..|.+|+|.++++.++...+..++..+...+.++.....+.+|+.++++.++|.+.+.. ....+...
T Consensus 391 ~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~ 469 (709)
T COG2274 391 SVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998887554321 12345568
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++
T Consensus 470 g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 999999999999755 3479999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
|+|||||++||+|||||||++++|++++||+++||+.+++|+||.++|.||||+|||+|.+|||||||||+|||||++||
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+||||||||||||++||+.|.+.|.+.. .++ |+|+||||++++++||||+|||+|+|+|+|+|+||++.
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~---------~~~-T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~- 697 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQIL---------QGR-TVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ- 697 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHHh---------cCC-eEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-
Confidence 9999999999999999999999999875 344 59999999999999999999999999999999999997
Q ss_pred CChHHHHHHHHh
Q 048639 1124 QGVYSRLYQLQA 1135 (1139)
Q Consensus 1124 ~g~f~~l~~~~~ 1135 (1139)
+|.|+++++.|.
T Consensus 698 ~g~y~~l~~~q~ 709 (709)
T COG2274 698 GGLYARLYQQQE 709 (709)
T ss_pred cChHHHHHhccC
Confidence 999999998763
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-86 Score=810.41 Aligned_cols=552 Identities=36% Similarity=0.556 Sum_probs=482.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 565 RLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLY 644 (1139)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 644 (1139)
.+..+.++..+........++++...++... ........+...++++.++..++.+...++..+.+.+...++|.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~ 92 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLF 92 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555554443 11122333445555555677777778888888888999999999999
Q ss_pred HHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048639 645 TGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGL 724 (1139)
Q Consensus 645 ~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~ 724 (1139)
+++++.|++||+ .+++|++++|+++|++.++..+......+...++.+++.+++++..+|.+++++++..|++.+...
T Consensus 93 ~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 170 (567)
T COG1132 93 EKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170 (567)
T ss_pred HHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 678999999999999999999999866677678889999999999999999999999888888877
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 725 IQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAH 804 (1139)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1139)
+..++.+...+..++...+..+.+.|+++|+++||+|+.++...+++.+..+...+...+.....+....+...+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
T COG1132 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766677778888888899999999999999999999999999999988888888777777777777777788888899
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccc
Q 048639 805 AVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKG 884 (1139)
Q Consensus 805 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 884 (1139)
++.++++..++..+.+++|.+.+++.+......++..+......+..+..+.+|++++++.+++....+.. .....|
T Consensus 251 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~ 327 (567)
T COG1132 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIG 327 (567)
T ss_pred HHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986653322111 223457
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||++++.++||++|
T Consensus 328 ~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 8999999999973 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 965 GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
++|||||+||+|||++||++|+|+++|||+++|++.++++|+|.++|+||||.|||+|.+||||||||||||||++|+||
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||++||+.|++++++.. +++| +|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~---------~~rT-~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~ 554 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLL---------KGRT-TLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-G 554 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHh---------cCCE-EEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-C
Confidence 999999999999999999999998664 4445 7889999999999999999999999999999999997 9
Q ss_pred ChHHHHHHHHhh
Q 048639 1125 GVYSRLYQLQAF 1136 (1139)
Q Consensus 1125 g~f~~l~~~~~~ 1136 (1139)
|.|++||+.|..
T Consensus 555 g~y~~l~~~~~~ 566 (567)
T COG1132 555 GLYARLYQAQGG 566 (567)
T ss_pred CHHHHHHHHhhc
Confidence 999999998864
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-85 Score=807.56 Aligned_cols=564 Identities=21% Similarity=0.272 Sum_probs=470.9
Q ss_pred HhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 556 FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD-PQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEK 634 (1139)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1139)
+.+.++.++.+++++++.++..++....++++...++.... .........+..+++++.++..++.+++.++....+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (588)
T PRK11174 14 KQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQH 93 (588)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666667777777777766677777766664431 11112233344555566677788888899999999999
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048639 635 AMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWA 714 (1139)
Q Consensus 635 ~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~ 714 (1139)
...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++
T Consensus 94 ~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 94 IRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 67899999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 715 VMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQG 794 (1139)
Q Consensus 715 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1139)
.+|+.++...+..+..+...++.++...+..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888777777777777777788888999999999999999999999999999999888888776666555554555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048639 795 FSLCLWNIAHAVALWYTAVLIDKKQATFRDG---------IRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDR 865 (1139)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~ 865 (1139)
+...+..+..+++.++++..+. |.+++|.+ +.+..+......++..+...+..+..+..+.+|+.++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5444444444444444444333 66666643 1222334455678888888999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 866 KTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
+++..+... ...+....+.|+|+||+|.|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|
T Consensus 331 ~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I 406 (588)
T PRK11174 331 PLAHPQQGE-KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406 (588)
T ss_pred CCcccCCCc-cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE
Confidence 543221111 1111112457999999988863 357999999999999999999999999999999999999 999999
Q ss_pred EECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCC
Q 048639 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025 (1139)
Q Consensus 946 ~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1025 (1139)
.+||+|+++++.+++|++|+||||||+||+|||||||.+++|+++|+|+++|++.++++++|.++|+||||.|||+|.+|
T Consensus 407 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L 486 (588)
T PRK11174 407 KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486 (588)
T ss_pred EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||||||||||||+++|+|||||||||+||++||+.|+++|++.. +++ |+|+||||++++.+||+|+||
T Consensus 487 SGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~---------~~~-TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS---------RRQ-TTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---------CCC-EEEEEecChHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999764 344 599999999999999999999
Q ss_pred eCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1106 DKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
++|+|+|.|+|+||+++ +|.|+++++.|.++
T Consensus 557 ~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~~~ 587 (588)
T PRK11174 557 QDGQIVQQGDYAELSQA-GGLFATLLAHRQEE 587 (588)
T ss_pred eCCeEeecCCHHHHHhc-chHHHHHHHHhhcC
Confidence 99999999999999986 89999999988754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-85 Score=815.89 Aligned_cols=563 Identities=34% Similarity=0.514 Sum_probs=490.4
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
++++ +.+.++.+..+...+++.++..+.....+++...+++................+++++.++..++.+++.+++.+
T Consensus 149 ~~~l-~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 149 LFRL-LGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 334455555566666666666666666667777766655432222222233444555666677888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l 305 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTM 305 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
++++.+|+.+++..+..++.++..++.++..++..+++.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+
T Consensus 306 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (711)
T TIGR00958 306 VTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYA 385 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888999999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE 870 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 870 (1139)
....+...+..+..++.+++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+
T Consensus 386 ~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 465 (711)
T TIGR00958 386 GYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP 465 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 66666666677777888899999999999999999999999999999999999999999999999999999998765543
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 871 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
... ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 466 ~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~ 543 (711)
T TIGR00958 466 LTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGV 543 (711)
T ss_pred CCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 221 111223457899999999998766668999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 951 GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 951 di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|+++++.+++|++|+||||||++|+|||||||.++.++++|++++++++.++++++++++|+||||.+||+|.+||||||
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred EHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
||||||||++++|+|||||||||+||+++|+.|++ .. .. ++ +|+|+||||++++..||+|+||++|+|
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~~---------~~-~TvIiItHrl~~i~~aD~IivL~~G~i 691 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-SR---------AS-RTVLLIAHRLSTVERADQILVLKKGSV 691 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-cc---------CC-CeEEEEeccHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999 32 11 33 459999999999999999999999999
Q ss_pred EEecChhHHhhccCChHHHHH
Q 048639 1111 VEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~~l~ 1131 (1139)
+|.|+|+||+++ +|.|++|+
T Consensus 692 ve~Gt~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 692 VEMGTHKQLMED-QGCYKHLV 711 (711)
T ss_pred EEeeCHHHHHhC-CCchHhcC
Confidence 999999999987 79999874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=795.52 Aligned_cols=485 Identities=33% Similarity=0.528 Sum_probs=457.7
Q ss_pred HHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 048639 7 ILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICC 77 (1139)
Q Consensus 7 ~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (1139)
.+...+++.|+..+ +++|+.||.++ ++|++++|+. |.++|++++...+...+.++.++++.+++|++++
T Consensus 215 ~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys 292 (709)
T COG2274 215 TYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYS 292 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556655444 99999999987 8999999995 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q 048639 78 WEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGE 157 (1139)
Q Consensus 78 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 157 (1139)
|.++++.++.+|+++++..++.+.+++..++..+..++.++.+.|++.|+++||+.+.|+.+..+|++...+..+...+.
T Consensus 293 ~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~ 372 (709)
T COG2274 293 WKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048639 158 ALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQR 237 (1139)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~ 237 (1139)
.........+..++..+..++++|+|+++|++|.+|.|.++++.+.......|+..+...+..++++..+.+|+.++++.
T Consensus 373 ~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~ 452 (709)
T COG2274 373 EKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDT 452 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE
Q 048639 238 KPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317 (1139)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 317 (1139)
+++...+......++..+.|+++||+|+|+.. ++++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|.
T Consensus 453 ~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 453 PPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred CcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 87643222123445567899999999999864 35799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCC
Q 048639 318 IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLS 397 (1139)
Q Consensus 318 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LS 397 (1139)
+||.|+.+++++++|++||||+||+.||+|||+|||.+++|+.++|++++||+.+++++||.++|.||+|.+||+|.+||
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecCh
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 477 (1139)
||||||++|||||++||+||||||||||||+++|+.|.+.|.+...++|+|+||||++++++||||+||++|+|+++|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHhhc
Q 048639 478 HSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 478 ~~l~~~~~~~~~~~~~~ 494 (1139)
+|+++..|.|.+++..|
T Consensus 692 ~ell~~~g~y~~l~~~q 708 (709)
T COG2274 692 EELLAQGGLYARLYQQQ 708 (709)
T ss_pred HHHHHhcChHHHHHhcc
Confidence 99999999999998754
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-84 Score=807.91 Aligned_cols=551 Identities=26% Similarity=0.354 Sum_probs=479.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 563 LLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRT 642 (1139)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 642 (1139)
++.+...++++++..+.....++++..+++.............++++++++.++..++.+++.++....+.+...++|.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (686)
T TIGR03797 135 RRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAA 214 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444334444444555443322222223334555666677788889999999999999999999999
Q ss_pred HHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048639 643 LYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG 722 (1139)
Q Consensus 643 l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~ 722 (1139)
+|++++++|++||+ ++++|++++|++ |++.+++.+...+...+..+..+++++++++.++|.+++++++++|+.+++
T Consensus 215 ~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~ 291 (686)
T TIGR03797 215 VWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAV 291 (686)
T ss_pred HHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 688999999997 799999998887777777777777888888999999999999998888888
Q ss_pred HHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNI 802 (1139)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1139)
..+..+..++..++..+...+..+.+.|+++|+++||+++.|+++.++|.+..++..+...+..........+...+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 371 (686)
T TIGR03797 292 TLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVL 371 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777788888888899999999999999999999999999999999999888888888777777777777788
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc
Q 048639 803 AHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRI 882 (1139)
Q Consensus 803 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 882 (1139)
..++++|+|++++..|.+++|.++++..+......++.++...+..+..+..+.+|+.++++.+++.+... ..+...
T Consensus 372 ~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~~~~~ 448 (686)
T TIGR03797 372 TSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK---TDPGKL 448 (686)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---CCCCCC
Confidence 88889999999999999999999999999999999999999999999999999999999998655432211 112224
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 449 ~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 449 SGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred CceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 5789999999999743 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+|+||||||++|+|||||||++++| ++|+++++|++.++++++++++|+||||++||+|.+|||||||||+|||||+++
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988 999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
|+|||||||||+||++||+.|++.|++. ++ |+|+||||++++..||||+|||+|+|+|.|+|+||+++
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~-----------~~-T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL-----------KV-TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh-----------CC-eEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999863 23 59999999999999999999999999999999999986
Q ss_pred cCChHHHHHHHH
Q 048639 1123 SQGVYSRLYQLQ 1134 (1139)
Q Consensus 1123 ~~g~f~~l~~~~ 1134 (1139)
+|.|++|++.|
T Consensus 675 -~~~y~~l~~~q 685 (686)
T TIGR03797 675 -EGLFAQLARRQ 685 (686)
T ss_pred -CcHHHHHHHhc
Confidence 89999999865
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-83 Score=725.67 Aligned_cols=548 Identities=25% Similarity=0.360 Sum_probs=480.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 048639 573 AAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEI 652 (1139)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~ 652 (1139)
..+.++......+++.......+..........+...++++.++..++.+.+......++.++-..+|.++++++.+.+.
T Consensus 9 ~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp 88 (559)
T COG4988 9 AVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGP 88 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 33444444445555555555555444344455667777778888889999999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048639 653 AWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQG 732 (1139)
Q Consensus 653 ~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~ 732 (1139)
.|-+ ..|+|++.+.++..++.++.++...++.++.+....+..++.++..+|..++++++++|++.++.++.....+.
T Consensus 89 ~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~ 166 (559)
T COG4988 89 AFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKD 166 (559)
T ss_pred hhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9988 78899999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 733 FSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTA 812 (1139)
Q Consensus 733 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1139)
.+++.......+.+++.+.++|+.|+|+|+..+...++..+..++..+.+++.....-....+..++.++..+++..+.+
T Consensus 167 ~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g 246 (559)
T COG4988 167 ASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIG 246 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999999999998888888887766555444444455566666666655555
Q ss_pred HHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeE
Q 048639 813 VLIDK-KQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNI 891 (1139)
Q Consensus 813 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nv 891 (1139)
..... |.+++...+.++....-+..|+.++...+.....+..+.+.+..+++.+.+..+...........+..|+++|+
T Consensus 247 ~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l 326 (559)
T COG4988 247 FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENL 326 (559)
T ss_pred HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecce
Confidence 55555 89999999999999999999999999999999999999999999998766543322211111222345667799
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccc
Q 048639 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP 971 (1139)
Q Consensus 892 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp 971 (1139)
+|+||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|.++++.+.||++++||||+|
T Consensus 327 ~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 327 SFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred EEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 99998642 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 048639 972 LLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051 (1139)
Q Consensus 972 ~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEa 1051 (1139)
+||+|||||||.+++++.+|++++++++++++.+|++. |+|+||++||+|.+|||||+||+++||||++++++++||||
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHH
Q 048639 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1052 TS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1131 (1139)
||+||.+||+.|++.|.+.. ++ +|||+||||++.+.++|+|+|||+|+++|.|+|++|.++ +|.|++|+
T Consensus 484 TA~LD~etE~~i~~~l~~l~---------~~-ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~ 552 (559)
T COG4988 484 TAHLDAETEQIILQALQELA---------KQ-KTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLL 552 (559)
T ss_pred ccCCCHhHHHHHHHHHHHHH---------hC-CeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHH
Confidence 99999999999999999876 44 459999999999999999999999999999999999987 89999999
Q ss_pred HHHhh
Q 048639 1132 QLQAF 1136 (1139)
Q Consensus 1132 ~~~~~ 1136 (1139)
++|.+
T Consensus 553 ~~q~~ 557 (559)
T COG4988 553 KQQEG 557 (559)
T ss_pred HHHhc
Confidence 98865
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-83 Score=804.66 Aligned_cols=510 Identities=27% Similarity=0.406 Sum_probs=462.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHH
Q 048639 605 WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRM 684 (1139)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l 684 (1139)
.+..+++++.++..++.+++.++....+.+...+++.++|+++++.|++||+ ++++|++++|++.| +.+++++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~ 271 (710)
T TIGR03796 195 PLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQL 271 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHH
Confidence 3455566666778888999999999999999999999999999999999999 68899999999988 67898888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcch
Q 048639 685 SVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE 764 (1139)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~ 764 (1139)
..++..++.+++.+++++.++|.+++++++.+|+.+++.++..+......++..+...+..+.+.|+++|+++||+++.+
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 351 (710)
T TIGR03796 272 ATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLE 351 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCC
Confidence 88888888888888999999999999999999998888888887777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 765 ENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWT 844 (1139)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1139)
+.+.++|.+...+..+...+..........+...+..+..++++|+|++++..|.+++|.++++..+......++..+..
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~ 431 (710)
T TIGR03796 352 SDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVG 431 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888877777777777777778888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCC---C-CCCC-CCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEE
Q 048639 845 LIPTVISAITVLAPAFEILDRKTEIEPDAP---E-SSES-GRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919 (1139)
Q Consensus 845 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~-~~~~-~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaI 919 (1139)
.+..+..+..+.+|+.++++.+++.+.... . ...+ +...|.|+|+||+|+|++. +.++|+|+||+|+|||++||
T Consensus 432 ~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaI 510 (710)
T TIGR03796 432 FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVAL 510 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEE
Confidence 999999999999999999987655432210 0 0111 2345789999999999753 35799999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHH
Q 048639 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSK 999 (1139)
Q Consensus 920 vG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~ 999 (1139)
||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||.+|+|||||||.+++|+++|+++++|++
T Consensus 511 vG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~ 590 (710)
T TIGR03796 511 VGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACK 590 (710)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccc
Q 048639 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE 1079 (1139)
Q Consensus 1000 ~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~ 1079 (1139)
.+++++++.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++
T Consensus 591 ~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---------- 660 (710)
T TIGR03796 591 DAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---------- 660 (710)
T ss_pred HhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred cCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHH
Q 048639 1080 LASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1080 ~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~ 1131 (1139)
.+ +|+|+||||++++..||||+|||+|+|+|.|+|+||+++ +|.|++|+
T Consensus 661 -~~-~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 661 -RG-CTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred -cC-CEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 23 459999999999999999999999999999999999986 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-83 Score=801.96 Aligned_cols=556 Identities=26% Similarity=0.373 Sum_probs=480.8
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 559 NERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638 (1139)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1139)
.++.+..+...++++++..+.....++++..+++.............+..+++++.++..++.+++.++..+.+.+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (708)
T TIGR01193 151 ITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSID 230 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555556666655443222222333445555566677888899999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048639 639 LRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718 (1139)
Q Consensus 639 l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~ 718 (1139)
+|.++|+++++.|++||+ .+++|++++|++ |.+.+.+.+...+...+..+..+++.+++++.++|.+++++++++|+
T Consensus 231 l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l 307 (708)
T TIGR01193 231 IILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPV 307 (708)
T ss_pred HHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999 688999999998 89999988887777777777777777888889999999999999999
Q ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLC 798 (1139)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1139)
++++.++..+..++..++..+...+..+.+.|+++|+++||+++.|+.+.+++.+...+..+...+..........+...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (708)
T TIGR01193 308 YAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAV 387 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888999999999999999999999999999999999988888877777776666677777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 048639 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSE 878 (1139)
Q Consensus 799 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 878 (1139)
+..+..++++|+|++++..|.+|+|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.... ...
T Consensus 388 ~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~-~~~ 466 (708)
T TIGR01193 388 TKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK-RTE 466 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc-ccC
Confidence 7777888899999999999999999999999999999999999999999999999999999999987655432211 111
Q ss_pred CCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH
Q 048639 879 SGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 879 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 958 (1139)
.+...|.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 467 ~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 2234578999999999973 35799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEccccccccccHHHHhccC-CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYG-NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~-~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
++|++|+||||||+||+|||||||.++ +++++|++++++++.+++++++.++|+||||.+||+|.+|||||||||+|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 5789999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 1117 (1139)
|++++|+|||||||||+||++||+.|++.|++. +++ |+|+||||++++..||+|+||++|+++|.|+|+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~----------~~~-T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL----------QDK-TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh----------cCC-EEEEEecchHHHHcCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999863 334 599999999999999999999999999999999
Q ss_pred HHhhccCChHHHHHH
Q 048639 1118 TLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1118 eLl~~~~g~f~~l~~ 1132 (1139)
||+++ +|.|++|++
T Consensus 694 ~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 694 ELLDR-NGFYASLIH 707 (708)
T ss_pred HHHhc-CCcHHHHhh
Confidence 99986 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-81 Score=766.67 Aligned_cols=557 Identities=25% Similarity=0.330 Sum_probs=466.1
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-Cchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 559 NERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYY-DPQA---KQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEK 634 (1139)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (1139)
.++.++.+++++++.++..++....++++...++... .... .....+....+.+++++..++.++..++....+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (574)
T PRK11160 11 YKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATFR 90 (574)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444545555555444444444444444444322 1110 00111122334445566777888888899999999
Q ss_pred HHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 048639 635 AMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWA 714 (1139)
Q Consensus 635 ~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~ 714 (1139)
...++|.++|++++++|++||+ +.++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++
T Consensus 91 ~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~ 168 (574)
T PRK11160 91 VLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 68899999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHH-HHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 715 VMPCHFI-GGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQ 793 (1139)
Q Consensus 715 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1139)
.+|++++ ..++..+..+...++.++...+..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+.....+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876654 345556666666777778888899999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 048639 794 GFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSL-TVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPD 872 (1139)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 872 (1139)
.+...+..+..++++++|+++ ..|.++.|.+++++.+... ...++..+...+.....+..+.+|+.++++.+++.+..
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 777777777777888999888 4788899887776655433 34466667777888889999999999999876553211
Q ss_pred CCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 873 APESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 873 ~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
.. ..+....+.|+|+||+|+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 328 ~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i 404 (574)
T PRK11160 328 TT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPI 404 (574)
T ss_pred cc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 11 1111235689999999999753 34799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 953 KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 953 ~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
++++.+++|++++||||||++|++||+|||.++.|+.+|++++++++.+++++++++ |+||||.+||+|.+||||||||
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999888999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
||||||++++|+|||||||||+||++||+.|++.|++.. ++ +|+|+||||++++..||+|++|++|+++|
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~---------~~-~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA---------QN-KTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---------CC-CEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 999999999999999999999999999999999999764 34 45999999999999999999999999999
Q ss_pred ecChhHHhhccCChHHHHHHH
Q 048639 1113 MGSHSTLVAESQGVYSRLYQL 1133 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f~~l~~~ 1133 (1139)
.|+|+||+++ +|.|++||+.
T Consensus 554 ~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 554 QGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred eCCHHHHHhc-CcHHHHHHhh
Confidence 9999999987 8999999863
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-81 Score=771.60 Aligned_cols=513 Identities=32% Similarity=0.478 Sum_probs=463.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHH
Q 048639 607 SLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSV 686 (1139)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~ 686 (1139)
..+++++.++..++.+++.++..+.+.+....+|.++++++++.|.++|+ ....|++++|+++|++.+.+.+...+..
T Consensus 68 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~ 145 (582)
T PRK11176 68 PLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALIT 145 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777788888888888999999999999999999999999999 6789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHH
Q 048639 687 IVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEEN 766 (1139)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~ 766 (1139)
++..++.+++.+++++.++|.+++++++++|+.+++..+..+..++..++.++...+..+.+.|.++|+++||+++.++.
T Consensus 146 ~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~ 225 (582)
T PRK11176 146 VVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV 225 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHH
Confidence 99999999999999999999999999998888888887777777777777888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 767 ILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLI 846 (1139)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1139)
+.++|.+..+...+...+..........+...+..+..+++++++++++..|.+++|.+++++.++.....++..+...+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 226 ETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888877777777777777777788888899999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCC
Q 048639 847 PTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAG 926 (1139)
Q Consensus 847 ~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSG 926 (1139)
..+..+..+.+|+.++++.+++.+... ...++..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsG 381 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSG 381 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCC
Confidence 999999999999999987654322111 1112234679999999999753 357999999999999999999999999
Q ss_pred HHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc-CCHHHHHHHHHHcCchH
Q 048639 927 KSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-ASEAEIVEVSKKANIHD 1005 (1139)
Q Consensus 927 KSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~-~sd~ei~~al~~~~l~~ 1005 (1139)
||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||||++|+|||||||.+++++ ++|++++++++.+++++
T Consensus 382 KSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~ 461 (582)
T PRK11176 382 KSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMD 461 (582)
T ss_pred HHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999998654 79999999999999999
Q ss_pred HHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeE
Q 048639 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTT 1085 (1139)
Q Consensus 1006 ~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tT 1085 (1139)
+++++|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||++|++.+.+.|++.. .++ |
T Consensus 462 ~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~---------~~~-t 531 (582)
T PRK11176 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ---------KNR-T 531 (582)
T ss_pred HHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---------CCC-E
Confidence 999999999999999999999999999999999999999999999999999999999999999764 344 5
Q ss_pred EEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1086 QITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1086 vI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
+|+||||++++..||+|++|++|+|+|.|+|++|+++ ++.|++|++.|..
T Consensus 532 vI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 532 SLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred EEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHHHHhc
Confidence 9999999999999999999999999999999999987 7999999987753
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-84 Score=701.98 Aligned_cols=506 Identities=30% Similarity=0.460 Sum_probs=440.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 617 SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILI 696 (1139)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~ 696 (1139)
+.++.-++.+++....+...+.+..++|+|+.++++.|+- .+.+|+.+.-..+..+.+. ++.....++.+.+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 3567778888888888999999999999999999999998 6779999988888888777 666666666666666666
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHH
Q 048639 697 ATIVS-LVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISL 775 (1139)
Q Consensus 697 ~~~~~-~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~ 775 (1139)
+++.. ..++|+++++++.++.++........-...+..|++.....+....-.+++-+.+|+|-|++|+...++|.+.+
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 65544 35689999888887777665544333333344555555666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 776 EKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITV 855 (1139)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (1139)
.++++..++.....+...-....+..+.....-.+.++.+..+..++|+.+....++....+|+.........++++...
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99999888876666555555555555655556666677778889999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 048639 856 LAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 856 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~ 935 (1139)
+|++++++++++|.... |..++....+|.|+|+||+|.|. |++|||+||||++.||+.+|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVvd~-P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDL-PGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhhcC-CCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 99999999988776432 22223334679999999999995 5689999999999999999999999999999999999
Q ss_pred ccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcc
Q 048639 936 RFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD 1015 (1139)
Q Consensus 936 rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gld 1015 (1139)
||||.++|+|.|||+||+.+..+.||++||+||||.+||+.||.+||.|+.|.+++||+.+|++.+++||-|.++|+||+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1016 t~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
|.|||+|-.||||||||+||||++|++|.|++||||||+||..||+.||.++.+.. +++| .|+|||||+|
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc---------a~RT-tIVvAHRLST 735 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC---------ANRT-TIVVAHRLST 735 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh---------cCCc-eEEEeeeehh
Confidence 99999999999999999999999999999999999999999999999999999876 5666 7999999999
Q ss_pred hhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhcC
Q 048639 1096 VINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSG 1138 (1139)
Q Consensus 1096 i~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~~ 1138 (1139)
|.+||.|+|+++|+|+|.|+|+||+.+.+|.|++||+.|+..+
T Consensus 736 ivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g 778 (790)
T KOG0056|consen 736 IVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQAMG 778 (790)
T ss_pred eecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcC
Confidence 9999999999999999999999999988999999998776553
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-81 Score=784.71 Aligned_cols=545 Identities=27% Similarity=0.413 Sum_probs=470.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 562 ELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRR 641 (1139)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 641 (1139)
.+..+...++++++..+.....++++..+++.............+..+++++.++..++.+++.++..+.+.+...++|.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (694)
T TIGR03375 145 SWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSA 224 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444443332222222333444455556677888899999999999999999999
Q ss_pred HHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 048639 642 TLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFI 721 (1139)
Q Consensus 642 ~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~ 721 (1139)
++|+|++++|++| + .+++|++++|+ +|++.+++.+...+...+..+..+++.+++++.++|.+++++++.+|++++
T Consensus 225 ~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~ 300 (694)
T TIGR03375 225 KLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILL 300 (694)
T ss_pred HHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999998 5 46899999999 799999999988877777777777777788889999999999999999988
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 722 GGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801 (1139)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1139)
+.++..+..++..++..+...+..+.+.|+++|+++||+|+.|+.+.+++.+..++..+...+..........+...+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (694)
T TIGR03375 301 PGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQ 380 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999999999999888888887777777777777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 048639 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGR 881 (1139)
Q Consensus 802 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~ 881 (1139)
+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+... .....+.
T Consensus 381 ~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~-~~~~~~~ 459 (694)
T TIGR03375 381 LVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT-RFLHRPR 459 (694)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCCCCCC
Confidence 888889999999999999999999999999999999999999999999999999999999998766532211 1111122
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++++|
T Consensus 460 ~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 460 LQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred ccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 45789999999999743 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++++||||||++|+|||+|||.+++|++++++++++++.+++++++.++|+||||.+||+|.+|||||||||+||||+++
T Consensus 539 ~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 539 RNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred hccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||++||+.|++.|++.. +++ |+|+||||++++..||||+||++|+|+|.|+|+||++
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~---------~~~-T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL---------AGK-TLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---------CCC-EEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999764 344 5999999999999999999999999999999999986
Q ss_pred c
Q 048639 1122 E 1122 (1139)
Q Consensus 1122 ~ 1122 (1139)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 5
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=777.30 Aligned_cols=546 Identities=29% Similarity=0.416 Sum_probs=476.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 048639 573 AAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEI 652 (1139)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~ 652 (1139)
+++..+.....++++..+++.............+..+++++.++..++.+++.++....+.+...++|.++|++++++|+
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 227 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPL 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33333333334444555555443222222334455566666777888899999999999999999999999999999999
Q ss_pred cccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 048639 653 AWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQG 732 (1139)
Q Consensus 653 ~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~ 732 (1139)
+||+ .+++|++++|+ +|++.+++++...+..++..++.+++.++++++++|.+++++++.+|+++++.++..+..++
T Consensus 228 ~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~ 304 (694)
T TIGR01846 228 GYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRK 304 (694)
T ss_pred HHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 68899999999 69999999988777777766666666678889999999999999999888888877777776
Q ss_pred hhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 733 FSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTA 812 (1139)
Q Consensus 733 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (1139)
..++..+...+..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..........+...+..+..++++|+|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 66777777788899999999999999999999999999999999998888888777777777777778888888999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEE
Q 048639 813 VLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIK 892 (1139)
Q Consensus 813 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvs 892 (1139)
+++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+.. .....+...|.|+|+||+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~~i~~~~vs 462 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAALPELRGAITFENIR 462 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCCeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999876553321 111122345789999999
Q ss_pred EECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccc
Q 048639 893 FNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL 972 (1139)
Q Consensus 893 f~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~ 972 (1139)
|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||||||.
T Consensus 463 f~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 463 FRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred EEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 999743 3469999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccc
Q 048639 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052 (1139)
Q Consensus 973 LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaT 1052 (1139)
+|+|||||||.+++|++++++++++++.+++++++.++|+||||.++++|.+||||||||+||||||+++|+||||||||
T Consensus 542 lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1053 SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1053 S~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
|+||+++++.+.+.|++.. .++ |+|+||||++++..||+|+||++|+|+|.|+|++|+++ +|.|++|++
T Consensus 622 s~LD~~~~~~i~~~l~~~~---------~~~-t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 690 (694)
T TIGR01846 622 SALDYESEALIMRNMREIC---------RGR-TVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQ 690 (694)
T ss_pred cCCCHHHHHHHHHHHHHHh---------CCC-EEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHH
Confidence 9999999999999999764 344 59999999999999999999999999999999999987 799999998
Q ss_pred HHh
Q 048639 1133 LQA 1135 (1139)
Q Consensus 1133 ~~~ 1135 (1139)
.|.
T Consensus 691 ~~~ 693 (694)
T TIGR01846 691 QQS 693 (694)
T ss_pred hhc
Confidence 764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-80 Score=764.20 Aligned_cols=557 Identities=24% Similarity=0.343 Sum_probs=462.5
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 560 ERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQE--VGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
++.++.+.+.+++.++..+.....++++..+++.......... ...+.++++++.++..++.+++.++....+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (592)
T PRK10790 19 SPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQ 98 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555566666666654432111111 11123334555556777788888899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|+++++.|.+||+ .+++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|
T Consensus 99 ~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~ 176 (592)
T PRK10790 99 QLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFP 176 (592)
T ss_pred HHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999988888889999999999999888888
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVI-QGFS 796 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 796 (1139)
+.++...+..+..+...++.++...+...++.|+++|+++||+|+.++.+.+++.+..++..+...+.....+.. ..+.
T Consensus 177 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (592)
T PRK10790 177 AVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLL 256 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777777676677777777888999999999999999999999999999988877666655544433332 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 048639 797 LCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPES 876 (1139)
Q Consensus 797 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 876 (1139)
..+..+...+..++++. +..|.++++.++++..+......++..+...+..+..+..+.+|+.++++.+++.... .
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~-- 332 (592)
T PRK10790 257 SLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN-D-- 332 (592)
T ss_pred HHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC-C--
Confidence 22222222222222333 5789999999999988888999999999999999999999999999998765432111 1
Q ss_pred CCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC
Q 048639 877 SESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956 (1139)
Q Consensus 877 ~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~ 956 (1139)
..+...+.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++
T Consensus 333 -~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~ 409 (592)
T PRK10790 333 -DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS 409 (592)
T ss_pred -ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC
Confidence 11223467999999999974 346999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++.+|++|+||||||.+|+||||+||++++ +++|++++++++++|++++++++|+||||.+||+|.+||||||||||||
T Consensus 410 ~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 410 HSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred HHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+|||||||||+||++|++.|++.|++.. .++ |+|+||||++++..||+|++|++|+++|.|+|
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~---------~~~-tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVR---------EHT-TLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------CCC-EEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999765 344 59999999999999999999999999999999
Q ss_pred hHHhhccCChHHHHHHHHhhc
Q 048639 1117 STLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
+||+++ ++.|++|++.|..+
T Consensus 559 ~~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHhC-CCHHHHHHHHHhhh
Confidence 999987 79999999877543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-81 Score=695.92 Aligned_cols=515 Identities=31% Similarity=0.456 Sum_probs=444.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHH
Q 048639 604 GWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683 (1139)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~ 683 (1139)
...+..|.++.+...++..++.+++.+..++..+..-.+.|.+++.++++||. ...+|.+.+.+.+-...+...+...
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~ 151 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAM 151 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHH
Confidence 34567788888899999999999999999999999999999999999999999 4568999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhc
Q 048639 684 MSVIVQCISSILIATIV-SLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFC 762 (1139)
Q Consensus 684 l~~~~~~~~~~~~~~~~-~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 762 (1139)
+..+++.++.+...... ..-..+..+++.+..+..+..+.+.....+....++..+++......+.|++.+..+||.||
T Consensus 152 V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfN 231 (591)
T KOG0057|consen 152 VFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFN 231 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcc
Confidence 88888887776655533 33445555566555555566555555556666677778888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 048639 763 HEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITEL 842 (1139)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1139)
.|++..++|...+....+...+.....+........++....+.+.+.+..-+..+.++++++......+.....++..+
T Consensus 232 nE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~L 311 (591)
T KOG0057|consen 232 NEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFL 311 (591)
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHH
Confidence 99999999999999999888877776666655555666666777777777778889999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcC
Q 048639 843 WTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGP 922 (1139)
Q Consensus 843 ~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~ 922 (1139)
...+..+..+..-+...+...+....+... ..+....+|.|+|+||+|.|+ |++++|+|+||+|++||||||||+
T Consensus 312 g~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~ 386 (591)
T KOG0057|consen 312 GSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGS 386 (591)
T ss_pred HHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECC
Confidence 888888888877777766554322221111 112223567899999999996 456799999999999999999999
Q ss_pred CCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcC
Q 048639 923 SGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKAN 1002 (1139)
Q Consensus 923 sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~ 1002 (1139)
|||||||++++|+||+| ++|+|+|||+|+++++++.+|+-||+||||..||++||.+||.||++.+++||+.++||+++
T Consensus 387 nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~ 465 (591)
T KOG0057|consen 387 NGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAG 465 (591)
T ss_pred CCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcC
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCC
Q 048639 1003 IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS 1082 (1139)
Q Consensus 1003 l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~ 1082 (1139)
+||.+.++|+||+|.|||+|..||||||||++||||++++|||++||||||+||.+||+.|.++|.+.. .+
T Consensus 466 ~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~---------~~ 536 (591)
T KOG0057|consen 466 LHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM---------SG 536 (591)
T ss_pred cHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc---------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999743 34
Q ss_pred CeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1083 RTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1083 ~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
+ |+|+|+||++++++||+|+|||+|+|+|+|+|+||++ +.+.|+++|..|...
T Consensus 537 r-TvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 537 R-TVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTSS 589 (591)
T ss_pred C-eEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccccc
Confidence 4 5999999999999999999999999999999999999 589999999877543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=756.74 Aligned_cols=560 Identities=31% Similarity=0.475 Sum_probs=496.9
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 559 NERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638 (1139)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1139)
.++.++.++++++++.+.+++.+..++++..+++............++..+++++.++..++.+++.++....+.+....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 88 (571)
T TIGR02203 9 VRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRD 88 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666666654443222223344555677777788888899999999999999999
Q ss_pred HHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048639 639 LRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718 (1139)
Q Consensus 639 l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~ 718 (1139)
+|..+++++++.|.++|+ +.+.|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+
T Consensus 89 lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l 166 (571)
T TIGR02203 89 IRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV 166 (571)
T ss_pred HHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLC 798 (1139)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1139)
.+++..+..+..+...++..+...+..+.+.|.++|+++||+++.++.+.+++.+..++..+...+.....+....+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (571)
T TIGR02203 167 LSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQL 246 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888888999999999999999999999999999999999999988888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 048639 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSE 878 (1139)
Q Consensus 799 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 878 (1139)
+..+..++.+++|++++..|.+++|.++++..++.....++..+...+..+..+..+.+|+.++++.+++.+... ..
T Consensus 247 ~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---~~ 323 (571)
T TIGR02203 247 IASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---RA 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC---CC
Confidence 778888889999999999999999999999999999999999999999999999999999999997655432111 11
Q ss_pred CCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH
Q 048639 879 SGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 879 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 958 (1139)
..+..+.|+++||+|+|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 324 ~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 324 IERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLA 402 (571)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHH
Confidence 11234679999999999754 45799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEccccccccccHHHHhccCCC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
++|++++||||||++|+|||||||.++++ +.+|++++++++.+++++++.++|+||||++||+|.+|||||||||||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999999986 79999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 1117 (1139)
|++++|+|||||||||+||++|++.|.+.|++.. +++ |+|+||||++.+..||+|++|++|+++|.|+|+
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~---------~~~-tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM---------QGR-TTLVIAHRLSTIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh---------CCC-EEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 9999999999999999999999999999999764 344 599999999999999999999999999999999
Q ss_pred HHhhccCChHHHHHHHHh
Q 048639 1118 TLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1118 eLl~~~~g~f~~l~~~~~ 1135 (1139)
+|+++ ++.|++++..+.
T Consensus 553 ~l~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 553 ELLAR-NGLYAQLHNMQF 569 (571)
T ss_pred HHHHc-CCHHHHHHHHhh
Confidence 99986 799999988663
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=685.54 Aligned_cols=505 Identities=25% Similarity=0.373 Sum_probs=426.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 048639 612 LVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCI 691 (1139)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~ 691 (1139)
++++...+..+...++.+....++..++|.++|+++...+..-.. .-..|+++||+..|++.+|+.+-..+...+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 456777777888888888888999999999999999988877777 456899999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHH
Q 048639 692 SSILIATIVSLVVDWRMALVAWAV-MPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQK 770 (1139)
Q Consensus 692 ~~~~~~~~~~~~~~~~l~lv~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 770 (1139)
+..++..+...+++|.+++.+..+ +.+.+++..++.++.++..+......+.+.+++.|.+.|....+.||+++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 777777777767788877665544 4456666777788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 048639 771 AKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELW-TLIPTV 849 (1139)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 849 (1139)
+.+..+...+...+......+.....+++..+..+..+.+.+..+..|..+......+++.......++.-+. ..+...
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999888888888777776666666666655555533333333444555553333333333233333333333 455677
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHH
Q 048639 850 ISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS 929 (1139)
Q Consensus 850 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKST 929 (1139)
.+...+..|+.++.+.+++...+.++. +...-.++++||+|+||+. ..++|+|+||++++||||||+|||||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~~~~---~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPDEQT---ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCcccc---CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 788899999999998877665431111 1111279999999999865 458999999999999999999999999999
Q ss_pred HHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhh
Q 048639 930 VLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISS 1009 (1139)
Q Consensus 930 L~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~ 1009 (1139)
++++|.|-|+|++|+|.++|.+++.++.+.+|+.|++++|.++||++|+|+||.+++|++||||+|++++++||++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEE
Q 048639 1010 LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITV 1089 (1139)
Q Consensus 1010 lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~I 1089 (1139)
.|+||+|.+||+|..||||||||++|||+||++.|++||||||.+||++||++|.+.|.+.. +++| +|+|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~---------~~kT-ll~v 529 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA---------EGKT-LLMV 529 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh---------cCCe-EEEE
Confidence 99999999999999999999999999999999999999999999999999999999998765 4455 9999
Q ss_pred ecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHH
Q 048639 1090 AHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133 (1139)
Q Consensus 1090 aHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1133 (1139)
|||+..+..||||+|||+|+++|+|+|++|+++ +|.|++|++.
T Consensus 530 THrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 530 THRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred ecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999999999999996 8999999863
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-79 Score=801.30 Aligned_cols=574 Identities=31% Similarity=0.466 Sum_probs=504.2
Q ss_pred ccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 547 RTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHY 626 (1139)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1139)
....++.+|.+..+..+..++++++++.+.++..|+++++++.+++..... .....+++.+++++++.+++.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~ 119 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG---ENVNDIIFSLVLIGIFQFILSFISSF 119 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567776666677788888999999999999999999998888765321 12334556677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048639 627 FFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDW 706 (1139)
Q Consensus 627 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 706 (1139)
++.+.+.+...++|.++|++++++|++||| .++.|++++|++.|++.++..+...+..++..++.++++++++++++|
T Consensus 120 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd--~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw 197 (1466)
T PTZ00265 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHD--NNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNA 197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999 578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 048639 707 RMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKES 786 (1139)
Q Consensus 707 ~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1139)
.+++++++++|+++++..+..+..+...+..+...++..+.+.|+++|+++||+|+.|+.+.++|.+..+...+...+..
T Consensus 198 ~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~ 277 (1466)
T PTZ00265 198 RLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877777777777889999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 787 IKYGVIQGFSLCLWNIAHAVALWYTAVLIDKK--------QATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAP 858 (1139)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 858 (1139)
...+...++...+.++.+++.+|+|++++..| .++++.+++++.........+..+...+..+..+..+.+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~r 357 (1466)
T PTZ00265 278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNS 357 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788888888888999999999999875 4677777766666555556666777788899999999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 859 AFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 859 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+++.++.+++.++.. .....+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 358 i~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 358 LYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred HHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999998877643211 1111111 24799999999998765567999999999999999999999999999999999999
Q ss_pred cCCccEEEE-CCcccCCCChHHHhhhceEEccccccccccHHHHhccCCC------------------------------
Q 048639 939 DPNEGIILI-DGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE------------------------------ 987 (1139)
Q Consensus 939 ~p~~G~I~i-dG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~------------------------------ 987 (1139)
+|++|+|++ ||.|+++++.+++|++|+||||+|.||++||+|||.++.+
T Consensus 436 ~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 436 DPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred cCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999999999 6799999999999999999999999999999999998631
Q ss_pred ---------------------------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 988 ---------------------------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 988 ---------------------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
..+|++++++++.+++++|+.++|+||||.+|++|.+|||||||||||||||+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCC------------
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG------------ 1108 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G------------ 1108 (1139)
++|+|||||||||+||+++++.|++.|++... .+++|+|+||||++++..||+|+||++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~--------~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~ 667 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQKTINNLKG--------NENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIG 667 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhh--------cCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccc
Confidence 99999999999999999999999999997641 1234699999999999999999999986
Q ss_pred -----------------------------------EEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1109 -----------------------------------EVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1109 -----------------------------------~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+|+|+|+|+||+++.+|.|+.|++.|.
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 668 EDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999856999999998774
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-79 Score=756.89 Aligned_cols=470 Identities=22% Similarity=0.292 Sum_probs=416.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|.+||+++ ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++++|+++++..++.+
T Consensus 107 l~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 185 (588)
T PRK11174 107 QQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGM 185 (588)
T ss_pred HhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 89999999999999999999999999999998999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+......++..++..+..++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (588)
T PRK11174 186 GAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVA 265 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888877777766666666655555554444
Q ss_pred HHHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCcccc
Q 048639 181 WVGAVVVTAKRSTGGEV---------LAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELE 251 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~ 251 (1139)
+++++.+. |.+|.|.+ ++++.+......|+..+...+..++++..+++|+.++++.+++.........+.
T Consensus 266 ~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~ 344 (588)
T PRK11174 266 VYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELAS 344 (588)
T ss_pred HHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCC
Confidence 55555443 77777754 222234445567899999999999999999999999998654321111101111
Q ss_pred CCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 252 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
...+.|+++||+|.|++ ++++|+|+||+++|||++|||||||||||||+++|+|+| |++|+|.+||+|+++++.+++
T Consensus 345 ~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~l 421 (588)
T PRK11174 345 NDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW 421 (588)
T ss_pred CCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHH
Confidence 12346999999987763 357999999999999999999999999999999999999 999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
|++|+||||+|+||++||+|||.+|+|++++++++++|+.++++++++++|+|+||.+||+|.+|||||||||+||||++
T Consensus 422 r~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll 501 (588)
T PRK11174 422 RKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL 501 (588)
T ss_pred HhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
+||+|||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|+++++|+|+||+++++.|++++
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~ 581 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLL 581 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999998
Q ss_pred hhcc
Q 048639 492 TMQN 495 (1139)
Q Consensus 492 ~~~~ 495 (1139)
..|.
T Consensus 582 ~~q~ 585 (588)
T PRK11174 582 AHRQ 585 (588)
T ss_pred HHhh
Confidence 7653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-78 Score=744.93 Aligned_cols=562 Identities=31% Similarity=0.507 Sum_probs=479.4
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 560 ERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNL 639 (1139)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 639 (1139)
++.+..+.+.+++.++..+.....++++..+++.............+..+++++.++..+..+++.++....+.+....+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (576)
T TIGR02204 14 RPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADI 93 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555556666666543322211223334444555555666777888888899999999999
Q ss_pred HHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 048639 640 RRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCH 719 (1139)
Q Consensus 640 ~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~ 719 (1139)
|..+++++++.|.++|+ ..+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++.+|+.
T Consensus 94 r~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~ 171 (576)
T TIGR02204 94 RRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLV 171 (576)
T ss_pred HHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999998 5778999999999999999999998989889999999999999999999999998888888
Q ss_pred HHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 720 FIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCL 799 (1139)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1139)
++..++..+..++..++..+...+..+++.|.++|+++||+++.++.+.+++.+..++..+...+..........+...+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (576)
T TIGR02204 172 LLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVL 251 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788877777888888888899999999999999999999999999999999888777666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 048639 800 WNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSES 879 (1139)
Q Consensus 800 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~ 879 (1139)
..+..++.+++|++++..|.++++.++++..+......++..+...+..+..+..+.+|+.++++.+++.+........+
T Consensus 252 ~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~ 331 (576)
T TIGR02204 252 VFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLP 331 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCC
Confidence 56667777889999999999999999999888889999999999999999999999999999987654422111111111
Q ss_pred CCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH
Q 048639 880 GRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 880 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 959 (1139)
.+..+.|+|+||+|+||++++.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 12346799999999998643357999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 960 LRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|++++||||||++|+|||||||.+++|+.+|++++++++.+++.++++++|+|+||++||+|.+|||||||||+||||+
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHH
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 1119 (1139)
+++|+|||||||||+||++|++.+.+.|++.. +++ |+|+||||++.+..||||++|++|+++|.|+|++|
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~---------~~~-t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLM---------KGR-TTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh---------CCC-EEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 99999999999999999999999999999764 344 59999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHH
Q 048639 1120 VAESQGVYSRLYQLQ 1134 (1139)
Q Consensus 1120 l~~~~g~f~~l~~~~ 1134 (1139)
+++ ++.|++|++.|
T Consensus 562 ~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 562 IAK-GGLYARLARLQ 575 (576)
T ss_pred HHc-CChHHHHHhhc
Confidence 986 89999999765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=743.53 Aligned_cols=558 Identities=28% Similarity=0.410 Sum_probs=468.6
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 559 NERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638 (1139)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1139)
.++.+..+.+.+++.++..++....++++..+++..... .....+..+++++.++..+..++..++......+...+
T Consensus 14 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK13657 14 LGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK---GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLA 90 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555555566666666544322 11222233333333444444444444445555666666
Q ss_pred HHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048639 639 LRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718 (1139)
Q Consensus 639 l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~ 718 (1139)
++.++|+++++.|..+|+ +.+.|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+++++++++|+
T Consensus 91 l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 91 VLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777999999999999999 678999999999999999988888888888888888888888899999999999988888
Q ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 719 HFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLC 798 (1139)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1139)
.+++..+..+..+...++..+...+..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+..........+...
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777776677777777888999999999999999999999999999999998888877777777666777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 048639 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSE 878 (1139)
Q Consensus 799 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~ 878 (1139)
+..+..++++++|++++..|.+++|.++++..++.....++..+...+..+..+..+.+|+.++++.+++.+... ...+
T Consensus 249 ~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~~ 327 (588)
T PRK13657 249 ASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPP-GAID 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC-CCCC
Confidence 777788888999999999999999999999999999999999999999999999999999999987654322111 1111
Q ss_pred CCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH
Q 048639 879 SGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 879 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 958 (1139)
.+...+.|+++||+|+||++ .++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 328 ~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 328 LGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRA 405 (588)
T ss_pred cCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHH
Confidence 12234679999999999743 4699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
.+|++|+||||||.+|+|||||||.+++|+.+|++++++++.+++++++.++|+|+||.+|++|.+||||||||||||||
T Consensus 406 ~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 406 SLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred HHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhH
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 1118 (1139)
|+++|+|||||||||+||++|++.|++.|++.. ++ +|+|+||||++.+..||||++|++|+++|.|+|++
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~---------~~-~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELM---------KG-RTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---------cC-CEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999998764 33 45999999999999999999999999999999999
Q ss_pred HhhccCChHHHHHHHHh
Q 048639 1119 LVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1119 Ll~~~~g~f~~l~~~~~ 1135 (1139)
|+++ ++.|++|++.+.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 556 LVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHC-CChHHHHHHHhh
Confidence 9986 799999998664
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-78 Score=735.05 Aligned_cols=516 Identities=22% Similarity=0.287 Sum_probs=431.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 561 RELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWY--SLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638 (1139)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1139)
+.++.+++.+++.++..+.....++++...++....... ...++ ...++++.++..++.++..++....+.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (529)
T TIGR02868 10 PRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGR 87 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444445555555544322111 11111 11122344556677788888888899999999
Q ss_pred HHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 048639 639 LRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC 718 (1139)
Q Consensus 639 l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~ 718 (1139)
+|.++|++++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++.+|+
T Consensus 88 lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 88 LRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999 678999999999999999999999999999999999999999999999999998888777
Q ss_pred HHHHH-HHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 719 HFIGG-LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 719 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+.++. ++..+..+...++.++..++..+++.|.++|+++||+|+.++.+.+++.+..++..+...+.....+....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554 44444445555666677788899999999999999999999999999999999988888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-C
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE-S 876 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~-~ 876 (1139)
.+..+..++++|+|++++..|.++++.+.++..+......++..+...+..+..+..+.+|+.++++.+++.+..... .
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 777778888889999999999999999988888888888889899889999999999999999999876543221111 1
Q ss_pred CCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC
Q 048639 877 SESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN 956 (1139)
Q Consensus 877 ~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~ 956 (1139)
...++..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|++++
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~- 402 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL- 402 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-
Confidence 1111234679999999999753 3699999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
.+++|++++||||||+||+|||||||++++|+++|+++++|++.+++++++.++|+||||++||+|.+||||||||||||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
||++++|+|||||||||+||++||+.|++.|++.. +++ |+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~---------~~~-TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL---------SGK-TVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---------CCC-EEEEEecCC
Confidence 99999999999999999999999999999999764 344 599999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=735.52 Aligned_cols=515 Identities=25% Similarity=0.376 Sum_probs=455.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHH
Q 048639 605 WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRM 684 (1139)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l 684 (1139)
.|..+++++.++..++.++..++....+.+...++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~i~srl~~Dv~~i~~~~~~~~ 114 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL--RHRTGDLMARATNDVDRVVFAAGEGV 114 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555556667777788888888899999999999999999999999999 67899999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcc
Q 048639 685 SVIVQCISSILIATIVS-LVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCH 763 (1139)
Q Consensus 685 ~~~~~~~~~~~~~~~~~-~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 763 (1139)
..++..++.++++++++ +.++|.+++++++++|+.+++..+..+..++..++.++..++..+.+.|+++|+++||+|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 194 (569)
T PRK10789 115 LTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGL 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcc
Confidence 88887766666555554 57999999999998999888887777777776777777788889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 048639 764 EENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELW 843 (1139)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (1139)
++.+.++|.+..++..+...+.....+....+......+..++.+++|++++..|.+++|.++++..+......++..+.
T Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~ 274 (569)
T PRK10789 195 EDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALA 274 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777776666666666666666777788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCC
Q 048639 844 TLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923 (1139)
Q Consensus 844 ~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~s 923 (1139)
..+..+..+..+.+|+.++++.+++.+... .+.+...+.|+|+||+|+|+.. +.++|+|+||+|+|||++||+|||
T Consensus 275 ~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~s 350 (569)
T PRK10789 275 WMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPT 350 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCC
Confidence 999999999999999999998654432111 1112235679999999999753 357999999999999999999999
Q ss_pred CCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCc
Q 048639 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003 (1139)
Q Consensus 924 GSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l 1003 (1139)
|||||||+++|+|+|+|++|+|.+||+|+++++.+.+|++++||||+|++|++||||||.++.+++++++++++++.+++
T Consensus 351 GsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l 430 (569)
T PRK10789 351 GSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASV 430 (569)
T ss_pred CCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCC
Q 048639 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083 (1139)
Q Consensus 1004 ~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~ 1083 (1139)
++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++.. .++
T Consensus 431 ~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~---------~~~ 501 (569)
T PRK10789 431 HDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG---------EGR 501 (569)
T ss_pred HHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh---------CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998764 334
Q ss_pred eEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1084 TTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1084 tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++|++.|..
T Consensus 502 -tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 502 -TVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred -EEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 59999999999999999999999999999999999986 7999999987654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=745.39 Aligned_cols=470 Identities=35% Similarity=0.609 Sum_probs=438.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|+++ ++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.+...++.+
T Consensus 96 ~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 174 (567)
T COG1132 96 LRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLAR 174 (567)
T ss_pred HhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999997 79999999999999999999988666666788889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..+..++..++.++.+.|.++|+++||+|+.++.+.+++.+..++..+...+.....+...++..++..+..++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
T COG1132 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVL 254 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999888888888888888888888888889999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|.+.+..+.+++|.+.+++.+......|+..+...+..+..+..+.+|++++++.++........ .....+.|+++
T Consensus 255 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~ 332 (567)
T COG1132 255 ALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFE 332 (567)
T ss_pred HHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999986654222111 22344679999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||
T Consensus 333 ~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 333 NVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 99999974 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|+||++||+|||.+|+|+++++++++||+.+++++++.++|+|+||.+||+|.+||||||||+|||||+++||+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||+||+++++.+++.+.++.++||+|+|+||++++++||+|+||++|+|++.|+|+||+++++.|++++..+.
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999988888999999999999999999999999999999999999999999999998654
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=731.40 Aligned_cols=559 Identities=26% Similarity=0.368 Sum_probs=470.7
Q ss_pred hchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
+.++.++.+++.++++++..++....++++..+++....... ...+.+.++++.++..+..++..++......+...
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666677777776665443211 11122222233334444444445555555666666
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|++++++|++||+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+++++++++|
T Consensus 90 ~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 167 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167 (585)
T ss_pred HHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999999999999 67799999999999999999998888888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+++++..+..+..+...++......+..+++.|+++|+++||+|+.++.+.+++.+..++..+...+.....+....+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (585)
T TIGR01192 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNR 247 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777776666666777788899999999999999999999999999999888887777666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESS 877 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 877 (1139)
.+..+..++++++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.+..+.+++...... ..
T Consensus 248 ~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~~ 326 (585)
T TIGR01192 248 MASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-AP 326 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-CC
Confidence 66677778889999999999999999999988888888899999999999999999999999999876543321111 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 878 ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 878 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
..+...+.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.
T Consensus 327 ~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 327 ELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR 404 (585)
T ss_pred CCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH
Confidence 111234679999999999742 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+.+|++++||||||.+|++||+|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+|||
T Consensus 405 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 1117 (1139)
||+++|+|||||||||+||+++++.+++.|++.. .+ .|+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALR---------KN-RTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh---------CC-CEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999998764 33 4599999999999999999999999999999999
Q ss_pred HHhhccCChHHHHHHHHh
Q 048639 1118 TLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1118 eLl~~~~g~f~~l~~~~~ 1135 (1139)
+|+++ +|.|+++++.+.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHHC-CChHHHHHHhCc
Confidence 99986 899999998764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-78 Score=752.14 Aligned_cols=479 Identities=33% Similarity=0.550 Sum_probs=435.0
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++.+.++++..+ +++|.++|+++ ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 223 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555 88999999987 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.++++.++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
...+.......++..+..++++++|++++.+|.+|+|.+++++.+......|+..+...+..++++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666666666666667777888999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++..... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+|.+
T Consensus 462 ~~~~~~~-~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 462 PNIPLTG-TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 5432111 111223346799999999998655568999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 319 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
||+|+++++.+++|++|+||+|+|++|++||+|||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
||||||+||||++++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++++..||+|++|++|+|+++|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999998 3334689999999999999999999999999999999999
Q ss_pred hhhccchHHHHH
Q 048639 479 SLLQTSDFYNRL 490 (1139)
Q Consensus 479 ~l~~~~~~~~~~ 490 (1139)
||+++++.|+++
T Consensus 699 eL~~~~~~y~~l 710 (711)
T TIGR00958 699 QLMEDQGCYKHL 710 (711)
T ss_pred HHHhCCCchHhc
Confidence 999988888765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=679.66 Aligned_cols=471 Identities=24% Similarity=0.354 Sum_probs=431.6
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
.+.++.+-.+. ++|+..+.++..++.++.++...++.+....+.++..++.+++++|..++++++++|++.+++..+++
T Consensus 84 ~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~ 162 (559)
T COG4988 84 AKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162 (559)
T ss_pred HhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++++....++.+++.|.++|+.|+|+|+..+...+++.+..++.++..++..++.-++..++.+++++..+++.
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvA 242 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVA 242 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888876
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCC-ccccCCCccEE
Q 048639 181 WVGAVVVTA-KRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKG-KELEKIDGNID 258 (1139)
Q Consensus 181 ~~g~~~v~~-~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~i~ 258 (1139)
.+.+..... |.++....+.++...--...|+..+...++.-..+.++.+.++.+++.+++....... ......+..++
T Consensus 243 v~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~ 322 (559)
T COG4988 243 VYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEIS 322 (559)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceee
Confidence 665555666 7898887777766666677899999999999999999999999999876654222111 11111122455
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
.+|++|.|++. +++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++++||
T Consensus 323 ~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 323 LENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred ecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 56999999864 3799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEE
Q 048639 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILL 418 (1139)
Q Consensus 339 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ill 418 (1139)
+|+|+||++|+||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++|||||+++++++|
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 419 LDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 419 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||||+||.+||+.|.+.|.++.+++|+|+||||++.+.+||+|++||+|+++++|+|+++.++++.|++++..|.
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998664
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-79 Score=657.01 Aligned_cols=492 Identities=33% Similarity=0.493 Sum_probs=433.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 048639 625 HYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIV-SLV 703 (1139)
Q Consensus 625 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 703 (1139)
..+|...++.+...+--+.|.|+.++++.|+- ...+|.+..-+.+..+-++..+...+...++.++-+....++ ...
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34566777888888999999999999999998 455777777777777777777777777777777766555444 456
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHH
Q 048639 704 VDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSR 783 (1139)
Q Consensus 704 ~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~ 783 (1139)
++|+.+++.++++.++.++.....-......|+..++++.......+++-+.+|+|.|+.|+.+..+|...++.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999998888887776666666677888889999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 784 KESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEIL 863 (1139)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~ 863 (1139)
+.....++.......++.....+....+...+..|.+|+|+....-.++.....|+..+.....++.++...+++.++.+
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 77666655555555556666666677777788899999999998888888888888888888899999999999999999
Q ss_pred ccCCCCCCCCCCCCCCC-CccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc
Q 048639 864 DRKTEIEPDAPESSESG-RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942 (1139)
Q Consensus 864 ~~~~~~~~~~~~~~~~~-~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~ 942 (1139)
+.+.+..... ..++.+ ...|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+||||+.++|+|||++++
T Consensus 241 ~~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s 317 (497)
T COG5265 241 DVEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317 (497)
T ss_pred ccchhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC
Confidence 8776654322 222222 4568899999999995 56789999999999999999999999999999999999999999
Q ss_pred cEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCC
Q 048639 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 943 G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G 1022 (1139)
|.|.|||+|++++..+.+|+-||+||||.+||+.||..|+.+|.|+++++|++.|++.+++++||+++|+||||.|||.|
T Consensus 318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred ceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI 1102 (1139)
-.||||||||+||||++|++|+||+||||||+||..||+.||.+|++.. .++| .++|||||+||.++|.|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~---------~~rt-tlviahrlsti~~adei 467 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS---------AGRT-TLVIAHRLSTIIDADEI 467 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh---------CCCe-EEEEeehhhhccCCceE
Confidence 9999999999999999999999999999999999999999999999876 4555 89999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1103 VVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1103 ~vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
+||++|+|+|.|+|+||+++ +|.|++||.
T Consensus 468 ivl~~g~i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 468 IVLDNGRIVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEeeCCEEEecCcHHHHHHc-CChHHHHhc
Confidence 99999999999999999987 999999995
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-77 Score=745.48 Aligned_cols=466 Identities=26% Similarity=0.347 Sum_probs=431.0
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|++||++. ++|++++|++ |++.+++.+...+...+..+..+++.++++++++|.+++++++++|+++++..++.+
T Consensus 220 l~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 297 (686)
T TIGR03797 220 LRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGL 297 (686)
T ss_pred HcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 8999999997 899999999888878777777778888899999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+..........+..++..+..++++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il 377 (686)
T TIGR03797 298 LQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALF 377 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888887777777778888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+++.... ...+....+.|+++
T Consensus 378 ~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~~~~~I~~~ 455 (686)
T TIGR03797 378 AAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA--KTDPGKLSGAIEVD 455 (686)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--cCCCCCCCceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999865543211 11112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||
T Consensus 456 nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 456 RVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 999999743 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++||+|||.+++| .++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|+|||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLD 613 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613 (686)
T ss_pred CCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999998 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
||||+||+++++.+.+.++++ ++|+|+||||++.++.||+|++|++|+|+++|+|+|++++++.|++++..|
T Consensus 614 EpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 614 EATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred CCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 999999999999999999876 689999999999999999999999999999999999999999999988643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=693.16 Aligned_cols=482 Identities=28% Similarity=0.467 Sum_probs=373.8
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC----ccEEEECCccCCCCCHHH
Q 048639 256 NIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS----NGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 330 (1139)
-++++|++..|..... .++++||||++.+||++||||+|||||||+++.|.|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 25999999999999999999999999999999999999987 899999999998887765
Q ss_pred Hh----cceEEEecCCC-CCcc--cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCCCccccccCCCCC
Q 048639 331 LR----KNIGAVSQEPS-LFTG--SLMDNIK----VGNMDADDEQIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLS 397 (1139)
Q Consensus 331 ~~----~~i~~v~Q~~~-l~~~--ti~~ni~----~g~~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~i~~~g~~LS 397 (1139)
+| +.|+|+||+|. .+|. ||.+-|. .... .+.++ ....+.+.++. +|+.... ...+..||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~e-----a~~~a~elL~~Vgl~~~~~~--~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAE-----ARKRAVELLEQVGLPDPERR--DRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHH-----HHHHHHHHHHHcCCCChhhh--ccCCcccC
Confidence 43 57999999985 4442 5555443 2211 11111 11222334443 4443222 56899999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEe
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~ 474 (1139)
||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.+ ||||+||.+|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999876 48999999999999987 999999999999999
Q ss_pred cChhhhhccch-HH-HHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhh
Q 048639 475 GTHHSLLQTSD-FY-NRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFF 552 (1139)
Q Consensus 475 g~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1139)
|+.++++++.. .| +.++..
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a----------------------------------------------------------- 257 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAA----------------------------------------------------------- 257 (539)
T ss_pred cCHHHHHhccCCcccHHHHhh-----------------------------------------------------------
Confidence 99999875310 00 000000
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 553 RIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVG 632 (1139)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1139)
T Consensus 258 -------------------------------------------------------------------------------- 257 (539)
T COG1123 258 -------------------------------------------------------------------------------- 257 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048639 633 EKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVA 712 (1139)
Q Consensus 633 ~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 712 (1139)
.| ..+....
T Consensus 258 -----------------~p--~~~~~~~---------------------------------------------------- 266 (539)
T COG1123 258 -----------------VP--RLGDEKI---------------------------------------------------- 266 (539)
T ss_pred -----------------CC--Ccccccc----------------------------------------------------
Confidence 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 713 WAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVI 792 (1139)
Q Consensus 713 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1139)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 048639 793 QGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPD 872 (1139)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 872 (1139)
....... +
T Consensus 267 ----------------------------------------------------------------------~~~~~~~-~- 274 (539)
T COG1123 267 ----------------------------------------------------------------------IRLPRRG-P- 274 (539)
T ss_pred ----------------------------------------------------------------------ccccccc-c-
Confidence 0000000 0
Q ss_pred CCCCCCCCCccccEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE
Q 048639 873 APESSESGRIKGRIEFQNIKFNYPSR--------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944 (1139)
Q Consensus 873 ~~~~~~~~~~~g~I~~~nvsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~ 944 (1139)
.....-++++|++.+|..+ ....+++||||+|++||++||||+||||||||.++|+|+++|++|+
T Consensus 275 -------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~ 347 (539)
T COG1123 275 -------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGS 347 (539)
T ss_pred -------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 0011248899999999742 1246899999999999999999999999999999999999999999
Q ss_pred EEECCcc--cCCCChHHHhhhceEEccccccc---cccHHHHhccCC----C---cCCHHHHHHHHHHcCchH-HHhhCC
Q 048639 945 ILIDGKG--IKEYNLRRLRSQIGLVQQEPLLF---SCSIRNNICYGN----E---AASEAEIVEVSKKANIHD-FISSLP 1011 (1139)
Q Consensus 945 I~idG~d--i~~~~l~~lR~~i~~V~Qdp~LF---~gTIreNL~~~~----~---~~sd~ei~~al~~~~l~~-~i~~lp 1011 (1139)
|.++|.| .+.-+...+|+++-+|+|||+-. ..||+++|.-.- + ....+.+.+.++.++|.+ +..+-|
T Consensus 348 i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 348 IIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred EEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 9999977 33334556888999999999632 469999886321 1 112245777899999875 444444
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEec
Q 048639 1012 DGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH 1091 (1139)
Q Consensus 1012 ~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH 1091 (1139)
..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+++.. .-+.|.|+|||
T Consensus 428 -----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~--------e~g~t~lfISH 488 (539)
T COG1123 428 -----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE--------ELGLTYLFISH 488 (539)
T ss_pred -----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH--------HhCCEEEEEeC
Confidence 57999999999999999999999999999999999999999999987751 22356999999
Q ss_pred Cchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChHHHHHHH
Q 048639 1092 RLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQL 1133 (1139)
Q Consensus 1092 rl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~ 1133 (1139)
+++.++. ||||+||++|+|||.|+.+++.++++..|.+..-.
T Consensus 489 Dl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 489 DLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred CHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999998 99999999999999999999999988889876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-76 Score=715.90 Aligned_cols=523 Identities=25% Similarity=0.334 Sum_probs=446.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 567 VVGTVAAAFSGISKPLFGFFIITIGVAYY-DPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYT 645 (1139)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 645 (1139)
.++++++++.++..+..+++..+.++... ..........+..+++++.++..++.+++.++....+.+...++|.++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 85 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLA 85 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666543 22122233445566667777788889999999999999999999999999
Q ss_pred HHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048639 646 GVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725 (1139)
Q Consensus 646 ~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~ 725 (1139)
++++.|..||+ +.++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++.+|+.+++..+
T Consensus 86 ~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~ 163 (529)
T TIGR02857 86 AVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMIL 163 (529)
T ss_pred HHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 6889999999999999999999998888888888888888889999999999998888888777777
Q ss_pred HHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHA 805 (1139)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1139)
..+..+...++.++...+..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+..........+...+..+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02857 164 IGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVA 243 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666777777788889999999999999999999999999999988888777766666555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccc
Q 048639 806 VALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGR 885 (1139)
Q Consensus 806 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 885 (1139)
+...++++.+..|.++++.++++..+......++..+...+..+..+..+.+|+.++++.+++..... ..+....+.
T Consensus 244 ~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~ 320 (529)
T TIGR02857 244 LVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPS 320 (529)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCe
Confidence 55555666666899999999988888888888999999999999999999999999997543221111 111112357
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+|+||+|+||++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++
T Consensus 321 i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 321 LEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred EEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 9999999999854 347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
||||||++|++||||||.++.++++|++++++++.++++++++++|+||||.+||+|.+||||||||++||||++++|+|
T Consensus 400 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i 479 (529)
T TIGR02857 400 WVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL 479 (529)
T ss_pred EEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||||||+||++|++.|++.|++.. +++ |+|+||||++++..||+|+||
T Consensus 480 lilDE~ts~lD~~~~~~i~~~l~~~~---------~~~-t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 480 LLLDEPTAHLDAETEALVTEALRALA---------QGR-TVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHhc---------CCC-EEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999764 344 599999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-76 Score=723.05 Aligned_cols=467 Identities=24% Similarity=0.399 Sum_probs=424.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILV-IGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~-~~~~~~ 99 (1139)
+++|.++|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++++|++.+ ++.++.
T Consensus 104 ~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~ 182 (574)
T PRK11160 104 LPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFY 182 (574)
T ss_pred hccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999987 8999999999999999999999999999999999999999999999999988888887654 457778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+...++..++..+..+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 262 (574)
T PRK11160 183 RLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLM 262 (574)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999988888888888888777777888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILF-GAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNID 258 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~ 258 (1139)
+++|++++ +|.+++|.+++++.+... ...|+..+...+..++++..+++|+.++++.+++...... .......+.|+
T Consensus 263 ~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~-~~~~~~~~~i~ 340 (574)
T PRK11160 263 LWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTT-STAAADQVSLT 340 (574)
T ss_pred HHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc-cCCCCCCCeEE
Confidence 89999884 888999999887766544 3457777888889999999999999999987654321111 11112345799
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++|+||
T Consensus 341 ~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 419 (574)
T PRK11160 341 LNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419 (574)
T ss_pred EEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEE
Confidence 99999999753 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEE
Q 048639 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILL 418 (1139)
Q Consensus 339 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ill 418 (1139)
||+|++|++||+|||.+++|+.+++++.++++.+++++++++ |+|+||.+||+|.+||||||||++||||++++|+|||
T Consensus 420 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred cccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999998999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 419 LDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 419 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
||||||+||+++++.+.+.+.+..+++|+|+||||++++..||+|++|++|++++.|+|+|++++++.|+++++
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999875
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=744.94 Aligned_cols=467 Identities=27% Similarity=0.419 Sum_probs=429.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|++||++. ++|++++|++ |++.+++++...+...+..+.++++.++++++++|.++++.++++|+++++..++.+
T Consensus 240 l~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 317 (708)
T TIGR01193 240 FELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKR 317 (708)
T ss_pred HcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999987 8999999998 999999999888888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.+...+..+...+..........+..++..+..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il 397 (708)
T TIGR01193 318 TFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVIL 397 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888887777777777777777778888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.++++..+......|+..+...+..++.++.+.+|+.++++.+++...........+..+.|+++
T Consensus 398 ~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~ 477 (708)
T TIGR01193 398 WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVIN 477 (708)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998655432111101122334679999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||
T Consensus 478 ~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 555 (708)
T TIGR01193 478 DVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555 (708)
T ss_pred EEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEec
Confidence 99999973 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|+||++||+|||.++ .+++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+||||
T Consensus 556 ~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliL 635 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635 (708)
T ss_pred CceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999999999999 578899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
|||||+||+++++.+.+.|++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++.++.|+++++
T Consensus 636 DE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 636 DESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred eCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999875 68999999999999999999999999999999999999998899988864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-76 Score=745.05 Aligned_cols=466 Identities=27% Similarity=0.369 Sum_probs=431.2
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|+++|++. ++|++++|+++| +.+++++...+..++..+..+++.++++++++|.++++.++.+|+++++..++.+
T Consensus 238 l~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 315 (710)
T TIGR03796 238 LRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSR 315 (710)
T ss_pred HcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 899999999988 7899999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+..+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+......+...+..++..+..++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il 395 (710)
T TIGR03796 316 RRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALIL 395 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888877777788888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCC----C-Cccc-cCCC
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSS----K-GKEL-EKID 254 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~----~-~~~~-~~~~ 254 (1139)
++|++++.+|.+|+|.++++..+......|+..+...+..++.+..+.+|+.++++.+++..... . .... ....
T Consensus 396 ~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~ 475 (710)
T TIGR03796 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475 (710)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998755432111 0 0111 2234
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++
T Consensus 476 ~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 476 GYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 679999999999853 4579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|++|++||+|||.++.|+.++++++++++.+++++++.++|+|++|.+||+|.+|||||||||+||||++++|
T Consensus 555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 555 VAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
+|||||||||+||+++++.+.+.+++ .++|+|+||||++++..||+|++|++|++++.|+|+|+++.++.|++++
T Consensus 635 ~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 635 SILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999976 5899999999999999999999999999999999999999999998876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=735.30 Aligned_cols=459 Identities=28% Similarity=0.458 Sum_probs=424.2
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|+++ +++ ++|++++|+ +|++.+++++...+...+..+..+++.++++++++|.++++.++++|+++++..++.+
T Consensus 231 l~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 307 (694)
T TIGR03375 231 LGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQR 307 (694)
T ss_pred hCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889987 555 799999999 7999999999888878888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.......+..++..+..++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 387 (694)
T TIGR03375 308 PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.+++++.+......|+..+...+..++.+..+.+|+.++++.+++..............+.|+++
T Consensus 388 ~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~ 467 (694)
T TIGR03375 388 VVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFR 467 (694)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999998765432111111112234679999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||
T Consensus 468 ~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 468 NVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 999999753 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++||+|||.+++|++++++++++++.++++++++.+|+|+||.+||+|.+||||||||++||||++++|+|+|||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|++++.|+|+||++.
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999998889999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=721.55 Aligned_cols=470 Identities=33% Similarity=0.516 Sum_probs=434.0
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++++|+.+++..++.+
T Consensus 109 ~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~ 187 (582)
T PRK11176 109 MGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSK 187 (582)
T ss_pred HcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999987 89999999999999999999999999999999999999999999999999999988988888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..+..++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T PRK11176 188 RFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888777777777777777888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++.+.+|.+++|.+++++.+......|+..+...+..++.++.+.+|+.++++.+++.... ....++..+.|+++
T Consensus 268 ~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~~~~~~~~~i~~~ 345 (582)
T PRK11176 268 YAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG--KRVIERAKGDIEFR 345 (582)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC--CcCCCCCCCeEEEE
Confidence 9999999999999999998888888888999999999999999999999999998765432111 11112233579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||
T Consensus 346 ~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 346 NVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred EEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 999999753 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGNMD-ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++||+|||.+|+++ .++++++++++.++++++++++|+|+||.+||+|.+|||||||||+|||||+++|+|+||
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999764 689999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.+.++.+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|++++..+
T Consensus 505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~ 579 (582)
T PRK11176 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQ 579 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHH
Confidence 999999999999999999999878899999999999999999999999999999999999999999999998754
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-74 Score=703.53 Aligned_cols=531 Identities=21% Similarity=0.296 Sum_probs=448.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 569 GTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVL 648 (1139)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 648 (1139)
.+++.++..+.....++++..+++.............+..+++++.++..++.+++.++....+.+...++|.++|++++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 90 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASF 90 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444455555555544322112223345555666667778888899999999999999999999999999
Q ss_pred cCCCcccccCCCChhHHHHHHHhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 649 RNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISD-RMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQA 727 (1139)
Q Consensus 649 ~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~ 727 (1139)
+.|+.. .+...+++++|++.+++.+.. .+..++..++.++. +++++.++|.+++++++.+|++++..++..
T Consensus 91 ~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~ 162 (544)
T TIGR01842 91 SATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNN 162 (544)
T ss_pred cCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999842 256788999999999988876 45556665555544 456788999999988888887777666666
Q ss_pred HhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 728 KSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVA 807 (1139)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1139)
+..++..++.++...+..+++.|+++|+++||+|+.++.+.++|.+..++..+...+.....+....+...+..+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (544)
T TIGR01842 163 RATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLV 242 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777888999999999999999999999999999999998888777777777777777777777777888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEE
Q 048639 808 LWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIE 887 (1139)
Q Consensus 808 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 887 (1139)
+++|++++..|.+++|.++++..+......++..+...+..+..+..+.+|+.++++.+++.++. .+.+...+.|+
T Consensus 243 ~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~~i~ 318 (544)
T TIGR01842 243 LGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEGHLS 318 (544)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCCeEE
Confidence 89999999999999999999999999999999999999999999999999999999765543211 11122346799
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+.+|++++||
T Consensus 319 ~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 99999999743 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 048639 968 QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047 (1139)
Q Consensus 968 ~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILl 1047 (1139)
||||.+|++|++|||.++.+++++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+|||
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999998777789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1048 LDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
||||||+||+++++.+.+.|++.. .+++|+|+||||++++..||+|++|++|+++|.|+|++|++
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~---------~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALK---------ARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHh---------hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999998753 23346999999999999999999999999999999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-75 Score=652.92 Aligned_cols=483 Identities=30% Similarity=0.428 Sum_probs=419.0
Q ss_pred HHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhH
Q 048639 7 ILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGV-LIAVIC 76 (1139)
Q Consensus 7 ~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-i~~~~~ 76 (1139)
.+.|.++.+++.++ +.++.++|.+. ++|++.+.+..-...|.+.+...+..++..++-+.... ++..-+
T Consensus 95 ~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~ 173 (591)
T KOG0057|consen 95 NFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKF 173 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777666 78899999986 89999999999999999998877777776655433333 333445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Q 048639 77 CWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRG 156 (1139)
Q Consensus 77 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (1139)
+...+++.+..+..+..+.....++..+..++..++.+...+.+-|+|.+..+||+||.|+++.++|.....++.+...+
T Consensus 174 Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~ 253 (591)
T KOG0057|consen 174 GAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLK 253 (591)
T ss_pred chHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhh
Confidence 66677777777777777777777888888888899999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048639 157 EALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQ 236 (1139)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~ 236 (1139)
.....++....-.++.....+.+.+.|..-+.++.+|.|+++.......++..|+..+......+.++..-...++...+
T Consensus 254 ~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~ 333 (591)
T KOG0057|consen 254 YSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLE 333 (591)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 77666666655555555666677778888888999999999998888889999999988887777777666655555443
Q ss_pred cCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 237 RKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
....+.. ...+...+++.|+|+||+|+|++ ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|
T Consensus 334 ~~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 334 VDEDIQE--AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred hhhhhhh--ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 3222211 11233445577999999999973 4579999999999999999999999999999999999999 99999
Q ss_pred EECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCC
Q 048639 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQL 396 (1139)
Q Consensus 317 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~L 396 (1139)
+|||+|+++++++.+|+.|||||||..||++||.+||.+|+|.++++++.++|+.+++||.+.++|+||+|.+||+|..|
T Consensus 409 ~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 409 LIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred EECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|++|++|++.+.|+
T Consensus 489 SGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 489 SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred ccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEecc
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHhhcc
Q 048639 477 HHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 477 ~~~l~~~~~~~~~~~~~~~ 495 (1139)
|+||++.++.|+++|..|.
T Consensus 569 h~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 569 HSELLAPSELYADLWTTQT 587 (591)
T ss_pred HHHHhhhhhHHHHHhcccc
Confidence 9999999999999997664
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=647.30 Aligned_cols=472 Identities=28% Similarity=0.410 Sum_probs=410.5
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVL-IAVICCWEVSLLIFLVVPMILVIGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 99 (1139)
..+++.|+-.+ ++|+++.-++...+.+. +....+.++...+.-+.++++ +...++|++++++++++.++..+...+.
T Consensus 303 h~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT 380 (790)
T KOG0056|consen 303 HNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKIT 380 (790)
T ss_pred Hhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeee
Confidence 56788899887 89999999888777665 333333333333333333333 3345789999999998888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
.+..+..+++..++.+-.+.-.+++-+.+|||-|+.|+++.++|.+...++.+.+.|...--.+.+..-..+..+..+..
T Consensus 381 eWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~g 460 (790)
T KOG0056|consen 381 EWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAG 460 (790)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhh
Confidence 77778888888888888888999999999999999999999999999999888877765444443333333333444444
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDI 259 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 259 (1139)
-.+.+|.|..+.+|+|+.+-+..|++.+.+|+..+......++....-.+++++++++++++.+.+...+....+|.|+|
T Consensus 461 sll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~f 540 (790)
T KOG0056|consen 461 SLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEF 540 (790)
T ss_pred hheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEE
Confidence 45567888899999999999999999999999999999999999999999999999988877443333344455689999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+||+|.|+ +++|+|+||||++.||+.+|+|||||+||||++++|.++++.++|.|.+||+|+++....++|++||.||
T Consensus 541 snvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 541 SNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred EEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 99999997 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
||..|||+||..||.+++|.+++|++++|++.+++||.|.++|+||+|.+||+|-.|||||||||||||+++++|.|++|
T Consensus 619 QDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlL 698 (790)
T KOG0056|consen 619 QDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILL 698 (790)
T ss_pred CcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHHhhccC
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTMQNL 496 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 496 (1139)
||+|||||..+|+.|+.++.++..++|.|+|+||++++-+||.|+|+++|+|+|.|+|+||+.. .|.|+++|+.|+.
T Consensus 699 DEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 699 DEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred cchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999987 8999999977654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-74 Score=721.23 Aligned_cols=470 Identities=30% Similarity=0.438 Sum_probs=434.0
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||++. ++|++++|+ +|++.+++++...+..++..+..+++.++++++++|.+++++++++|+++++..++.+
T Consensus 223 ~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~ 300 (694)
T TIGR01846 223 LGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGP 300 (694)
T ss_pred HcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 899999999 6999999999888777777777777778889999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..+....+..++..+..++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il 380 (694)
T TIGR01846 301 ILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILL 380 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.++++.++......|+..+...+..+++++.+.+|+.++++.+++.... .....+...+.|+++
T Consensus 381 ~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~~~~~~~i~~~ 459 (694)
T TIGR01846 381 WFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAALPELRGAITFE 459 (694)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCCCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999866543211 111122334679999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||+|
T Consensus 460 ~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q 538 (694)
T TIGR01846 460 NIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538 (694)
T ss_pred EEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEcc
Confidence 999999743 3569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++|++|||.+++|+.++++++++|+.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|||||
T Consensus 539 ~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD 618 (694)
T TIGR01846 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD 618 (694)
T ss_pred CCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|+++++|+|++++++++.|++++..+
T Consensus 619 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 619 EATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 99999999999999999999888999999999999999999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=708.77 Aligned_cols=467 Identities=28% Similarity=0.432 Sum_probs=415.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|+.. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++++++++|+++++..++.+
T Consensus 109 ~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 109 LRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999987 89999999999999999999999999999988888888999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVG-LGMFQSVTFCCWALI 179 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 179 (1139)
+.++..++.++..++..+.+.|.+.|+++||+|+.|+.+.+++.+..++..+...+.....+.. ..+..++..+..+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999999999999999998888777766666555433 233333333322223
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDI 259 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 259 (1139)
++++++ +..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.... .......+.|++
T Consensus 268 ~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~ 343 (592)
T PRK10790 268 LMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DDRPLQSGRIDI 343 (592)
T ss_pred HHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---CccCCCCCeEEE
Confidence 333334 5789999999999999999999999999999999999999999999999765432111 111122357999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+|++|+|++ ++++|+|+||++++||++||+|+||||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+|||
T Consensus 344 ~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~ 421 (592)
T PRK10790 344 DNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQ 421 (592)
T ss_pred EEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEc
Confidence 999999974 356999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
|+|++|++||+|||.+|+ +++++++.++++.++++++++++|+|+||.+||+|.+|||||||||+|||||+++|+|+||
T Consensus 422 Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 422 QDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred cCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
|||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|++++.|+|+|+++.++.|++++..+.
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~ 576 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQL 576 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHh
Confidence 9999999999999999999998788999999999999999999999999999999999999999999999997654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=699.86 Aligned_cols=471 Identities=27% Similarity=0.405 Sum_probs=428.4
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIA-VICCWEVSLLIFLVVPMILVIGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~l~~l~~~~~~~~~~~~~~ 99 (1139)
+++|.++|+++ ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.
T Consensus 80 l~~~~~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~ 158 (569)
T PRK10789 80 SRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYG 158 (569)
T ss_pred HcCCHHHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999987 89999999999999999888777778887766666655555 58999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+....+...+..+..+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (569)
T PRK10789 159 DQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLA 238 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888877777777766666777778
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDI 259 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 259 (1139)
+++|++++.+|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.... ....+..++.|++
T Consensus 239 l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~ 316 (569)
T PRK10789 239 IGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEE
Confidence 88999999999999999999999999999999999999999999999999999999865442111 1111223457999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+|++|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+||+
T Consensus 317 ~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 9999999753 357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
|+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
|||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|++++.|+|++++++++.|++++..+.
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 9999999999999999999988789999999999999999999999999999999999999999999999987654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=705.41 Aligned_cols=470 Identities=33% Similarity=0.552 Sum_probs=437.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|++. +.|++++|+++|++.+++++...+..++.++..+++.++++++++|.+++++++++|+++++..++.+
T Consensus 98 ~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~ 176 (571)
T TIGR02203 98 LGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSK 176 (571)
T ss_pred HcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999986 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+.....+....+..++..+..++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (571)
T TIGR02203 177 RLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVL 256 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888878888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.++++..++.....|+..+...+..++.++.+.+|+.++++.+++..... ....+..+.|+++
T Consensus 257 ~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~ 334 (571)
T TIGR02203 257 FIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--RAIERARGDVEFR 334 (571)
T ss_pred HHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--CCCCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999998655432111 1112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++++++.+++|++|+||||
T Consensus 335 ~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 335 NVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 999999754 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++|++|||.++++ +.++++++++++.+++++++.++|+|+||.+|++|.+|||||||||+||||++++|+|+||
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999986 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|+++++.++.|++++..+
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999998888999999999999999999999999999999999999998888999887643
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=703.03 Aligned_cols=472 Identities=30% Similarity=0.446 Sum_probs=430.1
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|..+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|.+++++++++|++.++..++.+
T Consensus 100 ~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~ 178 (588)
T PRK13657 100 IQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMR 178 (588)
T ss_pred HhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999986 89999999999999999888888888888888888888888999999999999988998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+.....+....+..++..+..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (588)
T PRK13657 179 KTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAIL 258 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888777777777777777777777888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+|+|.+++++.++.....|+..+...+..+..+..+.+|+.++++.+++..............+.|+++
T Consensus 259 ~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~ 338 (588)
T PRK13657 259 VLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFD 338 (588)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEE
Confidence 99999999999999999999988888889999999999999999999999999987654321111111112233569999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+||||
T Consensus 339 ~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 416 (588)
T PRK13657 339 DVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQ 416 (588)
T ss_pred EEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEec
Confidence 999999742 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++|++|||.+++|+.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++|||||+++|+|+|||
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred CcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|++++.|+|+++++..+.|++++..+.
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQG 571 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhh
Confidence 999999999999999999988789999999999999999999999999999999999999988899999987553
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-73 Score=696.34 Aligned_cols=472 Identities=28% Similarity=0.426 Sum_probs=430.8
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++.+...+..++..++++++.++++++++|.+++++++++|+++++..++.+
T Consensus 100 ~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 100 ISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999987 89999999999999999999888888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..+..++...+..++..+..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998998899999999999999999999999999999999999999988888777777777777777677777777888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+++..........+...+.++++
T Consensus 259 ~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 338 (585)
T TIGR01192 259 VIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFR 338 (585)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEE
Confidence 99999999999999999999988888889999999999999999999999999987654321111111112233569999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++++||||
T Consensus 339 ~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 416 (585)
T TIGR01192 339 HITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416 (585)
T ss_pred EEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEcc
Confidence 999999742 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++|++|||.++.++.++++++++++.+++++++.++|+|++|.+|++|.+||||||||++|||||+++|+++|||
T Consensus 417 ~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD 496 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD 496 (585)
T ss_pred CCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||+||+++++.+.+.+.+..+++|+|+||||++.+..||+|++|++|++++.|+|++++++++.|++++..+.
T Consensus 497 Epts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 497 EATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred CCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCc
Confidence 999999999999999999988789999999999999999999999999999999999999999999999997664
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-75 Score=712.65 Aligned_cols=499 Identities=27% Similarity=0.415 Sum_probs=369.7
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC---------
Q 048639 255 GNIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--------- 324 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--------- 324 (1139)
..|+++|++++|+... +.++|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 3699999999996321 246999999999999999999999999999999999999999999999987542
Q ss_pred -CCCHH---HHh-cceEEEecCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCC---cccc
Q 048639 325 -DLDLK---SLR-KNIGAVSQEP--SLFT-GSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYS---TELG 390 (1139)
Q Consensus 325 -~~~~~---~~~-~~i~~v~Q~~--~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~i~ 390 (1139)
..+.. .+| ++||||+|+| .+++ .||+||+.++.. .....+.. ..+.+.++.+ |+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~ 163 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILS 163 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHh
Confidence 12222 233 5799999998 5666 599999987521 11222211 1223445554 332 3456
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEe
Q 048639 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVE 467 (1139)
Q Consensus 391 ~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~ 467 (1139)
....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 7888999999999999999999999999999999999999999999999875 3 8999999999999876 99999999
Q ss_pred CcEEEEecChhhhhccch-HHH-HHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcc
Q 048639 468 DGQVTETGTHHSLLQTSD-FYN-RLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKG 545 (1139)
Q Consensus 468 ~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1139)
+|++++.|+++++..... .|. .+...
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~~~~l~~~---------------------------------------------------- 271 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPYTRALLAA---------------------------------------------------- 271 (623)
T ss_pred CCeecccCCHHHhhcCCCChhhhhhhhc----------------------------------------------------
Confidence 999999999887643110 000 00000
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQH 625 (1139)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1139)
. | ..
T Consensus 272 -------------~---------------------~----------------~~-------------------------- 275 (623)
T PRK10261 272 -------------V---------------------P----------------QL-------------------------- 275 (623)
T ss_pred -------------c---------------------C----------------cc--------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 626 YFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVD 705 (1139)
Q Consensus 626 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 705 (1139)
+. +..+ ..+ .-+. ..
T Consensus 276 --------------~~-~~~~--~~~-~~~~--~~--------------------------------------------- 290 (623)
T PRK10261 276 --------------GA-MKGL--DYP-RRFP--LI--------------------------------------------- 290 (623)
T ss_pred --------------cc-cccc--cCC-cccc--cc---------------------------------------------
Confidence 00 0000 000 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 048639 706 WRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785 (1139)
Q Consensus 706 ~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1139)
.
T Consensus 291 ----------------------------~--------------------------------------------------- 291 (623)
T PRK10261 291 ----------------------------S--------------------------------------------------- 291 (623)
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048639 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDR 865 (1139)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~ 865 (1139)
...
T Consensus 292 -----------------------------------------------------------------------------~~~ 294 (623)
T PRK10261 292 -----------------------------------------------------------------------------LEH 294 (623)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 000
Q ss_pred CCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 866 KTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRP--------EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+....+....... .....-|+++||+++|+.+. ..++|+||||+|++||++||+|+||||||||+++|.|+
T Consensus 295 ~~~~~~~~~~~~~-~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 295 PAKQEPPIEQDTV-VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred ccccCcccccccc-cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 0000000000000 00012499999999996311 23699999999999999999999999999999999999
Q ss_pred ccCCccEEEECCcccCCCChH---HHhhhceEEcccc--cccc-ccHHHHhccCC---C----cCCHHHHHHHHHHcCch
Q 048639 938 YDPNEGIILIDGKGIKEYNLR---RLRSQIGLVQQEP--LLFS-CSIRNNICYGN---E----AASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 938 ~~p~~G~I~idG~di~~~~l~---~lR~~i~~V~Qdp--~LF~-gTIreNL~~~~---~----~~sd~ei~~al~~~~l~ 1004 (1139)
.+|++|+|.++|.++..++.. .+|++|+||||+| .++. .|+++|+.++. . ...++++.++++.+++.
T Consensus 374 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~ 453 (623)
T PRK10261 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL 453 (623)
T ss_pred CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999877643 4677899999998 3664 59999986421 1 11124577788888884
Q ss_pred -HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCC
Q 048639 1005 -DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR 1083 (1139)
Q Consensus 1005 -~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~ 1083 (1139)
+...+.| ..||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++... ..+
T Consensus 454 ~~~~~~~~-----------~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~--------~~g 514 (623)
T PRK10261 454 PEHAWRYP-----------HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR--------DFG 514 (623)
T ss_pred HHHhhCCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcC
Confidence 3433332 46999999999999999999999999999999999999999999987641 224
Q ss_pred eEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChHHH
Q 048639 1084 TTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1084 tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
+|+|+|||+++.+.. ||||+||++|+|+|.|+++++..++...|.+
T Consensus 515 ~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 569999999999986 9999999999999999999998766666654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-75 Score=704.60 Aligned_cols=460 Identities=24% Similarity=0.406 Sum_probs=359.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHH-Hh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKS-LR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~ 332 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .+
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999996 8999999999997766543 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNMD-----ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
+.++||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999986421 1112211 1233455665 45555667788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 234 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHH
Confidence 999999999999999999999999999999998864 47899999999999876 9999999999999877654321000
Q ss_pred hHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHH
Q 048639 485 DFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELL 564 (1139)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1139)
. .
T Consensus 235 ---------------------------------------------------------------------~-~-------- 236 (506)
T PRK13549 235 ---------------------------------------------------------------------I-I-------- 236 (506)
T ss_pred ---------------------------------------------------------------------H-H--------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 565 RLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLY 644 (1139)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 644 (1139)
.
T Consensus 237 ---------------------------~---------------------------------------------------- 237 (506)
T PRK13549 237 ---------------------------T---------------------------------------------------- 237 (506)
T ss_pred ---------------------------H----------------------------------------------------
Confidence 0
Q ss_pred HHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048639 645 TGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGL 724 (1139)
Q Consensus 645 ~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~ 724 (1139)
.. +. .. .
T Consensus 238 -~~-------~~--~~-~-------------------------------------------------------------- 244 (506)
T PRK13549 238 -MM-------VG--RE-L-------------------------------------------------------------- 244 (506)
T ss_pred -Hh-------hC--cC-c--------------------------------------------------------------
Confidence 00 00 00 0
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 725 IQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAH 804 (1139)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1139)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccc
Q 048639 805 AVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKG 884 (1139)
Q Consensus 805 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 884 (1139)
. .. .+..... +. ..
T Consensus 245 ----------------~---------------------------------------~~---~~~~~~~------~~--~~ 258 (506)
T PRK13549 245 ----------------T---------------------------------------AL---YPREPHT------IG--EV 258 (506)
T ss_pred ----------------c---------------------------------------cc---ccccccC------CC--Cc
Confidence 0 00 0000000 00 12
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEECCcccCCCCh-HHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-PNEGIILIDGKGIKEYNL-RRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~l-~~lR~ 962 (1139)
.|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999998 599999999999875543 34677
Q ss_pred hceEEcccc---ccc-cccHHHHhccCCC-c------CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 963 QIGLVQQEP---LLF-SCSIRNNICYGNE-A------AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 963 ~i~~V~Qdp---~LF-~gTIreNL~~~~~-~------~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+++||||+| .+| ..|+.+|+.++.. . .+ .+++.++++..++.+ +-.+.+ ...|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~----~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ASPELA----IARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------CCcccc----cccCCH
Confidence 899999997 355 4699999976420 0 11 134556666666531 112233 357999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. ..++|||+|||+++.+.. |||+++|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tvi~~sHd~~~~~~~~d~v~~l~ 479 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV---------QQGVAIIVISSELPEVLGLSDRVLVMH 479 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH---------HCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999764 334569999999999876 99999999
Q ss_pred CCEEEEecChhHHh
Q 048639 1107 KGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl 1120 (1139)
+|+++..|+++++.
T Consensus 480 ~G~i~~~~~~~~~~ 493 (506)
T PRK13549 480 EGKLKGDLINHNLT 493 (506)
T ss_pred CCEEEEEeccccCC
Confidence 99999999998874
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-73 Score=694.58 Aligned_cols=430 Identities=23% Similarity=0.363 Sum_probs=389.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH-
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYT- 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~- 99 (1139)
+++|.+||++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++++++.+|++.++...+.
T Consensus 97 l~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~ 175 (529)
T TIGR02868 97 ARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSL 175 (529)
T ss_pred hccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 8999999999999999999999889999999888999999999999999998888787766554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+..+...++..++..+..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (529)
T TIGR02868 176 RAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGA 255 (529)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667778888999999999999999999999999999999999999999988888888888888878777888888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCC--CccccCCCccE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSK--GKELEKIDGNI 257 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~i 257 (1139)
+++|++++.+|.+++|.+++++.+......|+..+...+..++++..+.+|+.++++.+++...... .....+..+.|
T Consensus 256 ~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I 335 (529)
T TIGR02868 256 LWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTL 335 (529)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceE
Confidence 8999999999999999999999888888899999999999999999999999999986654321111 01111123569
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|+|
T Consensus 336 ~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~ 412 (529)
T TIGR02868 336 ELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISV 412 (529)
T ss_pred EEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEE
Confidence 999999999753 4699999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 338 VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 338 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
|||+|+||++||+|||.+|+|++++++++++++.+++++++.++|+|+||.+||+|.+||||||||||||||++++|+||
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCc
Q 048639 418 LLDEATSALDSESEKLVQEALERAMQGRTVILIAHRM 454 (1139)
Q Consensus 418 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 454 (1139)
|||||||+||+++++.+.+.+.+..+++|+|+||||+
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999888899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=633.50 Aligned_cols=457 Identities=25% Similarity=0.430 Sum_probs=401.4
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 32 LSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFL-VVPMILVIGATYTKRMNAVSATKL 110 (1139)
Q Consensus 32 ~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1139)
+++||++||+..|++.+++.+...+.+++..+....+..+.+-+++|.+++.+.. .+.++++++..+.++-++..+...
T Consensus 112 ~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~ 191 (573)
T COG4987 112 YRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLA 191 (573)
T ss_pred cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 5899999999999999999999999999998888877777777888888765544 344456778888888888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 048639 111 LYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWA-LIIWVGAVVVTA 189 (1139)
Q Consensus 111 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~ 189 (1139)
...+.+.+.+.|.++|....+.||.++.+.+.+.+.-..+.+...+...+..+...+..++..+..+ .++|.+ ..+-.
T Consensus 192 ~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~ 270 (573)
T COG4987 192 QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGA 270 (573)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcC
Confidence 9999999999999999999999999999999999999999999999999988888888777666655 334443 34455
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCC
Q 048639 190 KRSTGGEVLAAVMSILFGAIALTYAA-PDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPS 268 (1139)
Q Consensus 190 ~~l~~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~ 268 (1139)
|..+...+..+++.++....++..+. ..+....+...|+.|+.++++.+++...+. . +.+..+..++++||||+||+
T Consensus 271 G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~-~~~~~~~~l~~~~vsF~y~~ 348 (573)
T COG4987 271 GALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E-QTATTGQALELRNVSFTYPG 348 (573)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c-ccCCccceeeeccceeecCC
Confidence 66665444444444444445555555 556788899999999999999887764331 1 11112227999999999987
Q ss_pred CCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCccc
Q 048639 269 RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGS 348 (1139)
Q Consensus 269 ~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~t 348 (1139)
+ +.++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|.++|.++..++.+.+|+.|++++|.++||++|
T Consensus 349 ~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~T 427 (573)
T COG4987 349 Q-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427 (573)
T ss_pred C-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHH
Confidence 5 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 349 LMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 349 i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
+|||+.+++|+++||+++++++.+++++.++..|+|++|.+||.|..||||||||+||||+|++|++++||||||.+||+
T Consensus 428 lr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 429 ESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 429 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
.|++++.+.+.+..+|||+|+||||+..++.||||+||++|+++++|+|++++++++.|+++++
T Consensus 508 ~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 508 ITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=694.47 Aligned_cols=473 Identities=37% Similarity=0.597 Sum_probs=429.3
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|++. ++|++++|+++|++.+++++...+..++..+..+++.++++++++|.+++++++.+|+++++..++.+
T Consensus 102 ~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~ 180 (576)
T TIGR02204 102 ISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGR 180 (576)
T ss_pred HcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999986 89999999999999999999888888888888888899999999999999988888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..........+..++.++..++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (576)
T TIGR02204 181 RVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVL 260 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888777776666666666566666677778
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCC-ccccCCCccEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKG-KELEKIDGNIDI 259 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~~~~~~i~~ 259 (1139)
++|++++.+|.+|+|.++++..+......|+..+...+..+..+..+.+|+.++++.+++....... ....+..+.|++
T Consensus 261 ~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (576)
T TIGR02204 261 WVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEF 340 (576)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEE
Confidence 8999999999999999999998888889999999999999999999999999999865442111111 111122356999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+||+|+|++++++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.+++|++|+|||
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 99999998543367999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
|+|++|++||+|||.+++|+.++++++++++.+++.++++++|+|++|.+||+|.+||||||||++||||++++|+|+||
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred cCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|++++++++.|++++..+
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 999999999999999999999888999999999999999999999999999999999999999999999887543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-74 Score=697.45 Aligned_cols=471 Identities=28% Similarity=0.437 Sum_probs=361.8
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCCCHH
Q 048639 256 NIDIRDVCFAYPSR-PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 329 (1139)
.++++|++++|++. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999998776543
Q ss_pred H---Hh-cceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCc---cccccCCCC
Q 048639 330 S---LR-KNIGAVSQEPS--LFT-GSLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYST---ELGQRGVQL 396 (1139)
Q Consensus 330 ~---~~-~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t---~i~~~g~~L 396 (1139)
. +| ++++||+|++. +++ .|+++|+.++. .....++. ...+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAA-----RGEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 2 33 57999999985 444 48999986421 01112211 11223345544 3322 246678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEE
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
|||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 37999999999999875 99999999999999
Q ss_pred ecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhH
Q 048639 474 TGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFR 553 (1139)
Q Consensus 474 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1139)
.|+++++..... . .
T Consensus 238 ~g~~~~~~~~~~-----------------------------------------------------~---~---------- 251 (529)
T PRK15134 238 QNRAATLFSAPT-----------------------------------------------------H---P---------- 251 (529)
T ss_pred eCCHHHHhhCCC-----------------------------------------------------C---H----------
Confidence 888766531000 0 0
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 554 IWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGE 633 (1139)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1139)
. . .
T Consensus 252 ~-~---~------------------------------------------------------------------------- 254 (529)
T PRK15134 252 Y-T---Q------------------------------------------------------------------------- 254 (529)
T ss_pred H-H---H-------------------------------------------------------------------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 048639 634 KAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAW 713 (1139)
Q Consensus 634 ~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~ 713 (1139)
.+++ .+ .
T Consensus 255 --------~~~~----~~-------~------------------------------------------------------ 261 (529)
T PRK15134 255 --------KLLN----SE-------P------------------------------------------------------ 261 (529)
T ss_pred --------HHHH----hC-------c------------------------------------------------------
Confidence 0000 00 0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 714 AVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQ 793 (1139)
Q Consensus 714 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1139)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 048639 794 GFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDA 873 (1139)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 873 (1139)
...+. ...
T Consensus 262 ----------------------------------------------------------------------~~~~~-~~~- 269 (529)
T PRK15134 262 ----------------------------------------------------------------------SGDPV-PLP- 269 (529)
T ss_pred ----------------------------------------------------------------------ccccc-ccC-
Confidence 00000 000
Q ss_pred CCCCCCCCccccEEEEeEEEECCCC--------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 874 PESSESGRIKGRIEFQNIKFNYPSR--------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 874 ~~~~~~~~~~g~I~~~nvsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
. .. ...|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|++ |++|+|
T Consensus 270 ~----~~--~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i 342 (529)
T PRK15134 270 E----PA--SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEI 342 (529)
T ss_pred C----CC--CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEE
Confidence 0 00 1148999999999621 1246999999999999999999999999999999999998 589999
Q ss_pred EECCcccCCCChHH---HhhhceEEcccc--cccc-ccHHHHhccCCC----cC----CHHHHHHHHHHcCch-HHHhhC
Q 048639 946 LIDGKGIKEYNLRR---LRSQIGLVQQEP--LLFS-CSIRNNICYGNE----AA----SEAEIVEVSKKANIH-DFISSL 1010 (1139)
Q Consensus 946 ~idG~di~~~~l~~---lR~~i~~V~Qdp--~LF~-gTIreNL~~~~~----~~----sd~ei~~al~~~~l~-~~i~~l 1010 (1139)
.+||.++..++... +|++++||||+| .+|. .|+++|+.++.. .. .++++.++++..++. +...+
T Consensus 343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~- 421 (529)
T PRK15134 343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR- 421 (529)
T ss_pred EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-
Confidence 99999998766543 477899999998 3665 599999976310 01 134567778887774 23322
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEe
Q 048639 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA 1090 (1139)
Q Consensus 1011 p~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~Ia 1090 (1139)
...+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++... ..++|||+||
T Consensus 422 ----------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tvi~vs 483 (529)
T PRK15134 422 ----------YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ--------KHQLAYLFIS 483 (529)
T ss_pred ----------CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH--------hhCCEEEEEe
Confidence 2347999999999999999999999999999999999999999999997641 1244699999
Q ss_pred cCchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChH
Q 048639 1091 HRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1091 Hrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f 1127 (1139)
|+++.+.. ||||++|++|+|++.|+++++++.+.-.|
T Consensus 484 Hd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 484 HDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred CCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 99999876 99999999999999999999986543333
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-74 Score=692.68 Aligned_cols=457 Identities=20% Similarity=0.350 Sum_probs=356.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998776554 3467
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDA---------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
++||+|++.++.. |++||+.++.... ..++. ...+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-----RVRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHH-----HHHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988865 9999998763210 11111 11233455555 454456677889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||++++|++|+++..|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999998875 47999999999999876 99999999999998887655421
Q ss_pred cchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhh
Q 048639 483 TSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERE 562 (1139)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1139)
.. ..
T Consensus 235 ~~-----~~----------------------------------------------------------------------- 238 (510)
T PRK09700 235 DD-----IV----------------------------------------------------------------------- 238 (510)
T ss_pred HH-----HH-----------------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 563 LLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRT 642 (1139)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 642 (1139)
.
T Consensus 239 -----------------------------~-------------------------------------------------- 239 (510)
T PRK09700 239 -----------------------------R-------------------------------------------------- 239 (510)
T ss_pred -----------------------------H--------------------------------------------------
Confidence 0
Q ss_pred HHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048639 643 LYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG 722 (1139)
Q Consensus 643 l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~ 722 (1139)
.+ +. .. .
T Consensus 240 ---~~-------~~--~~-~------------------------------------------------------------ 246 (510)
T PRK09700 240 ---LM-------VG--RE-L------------------------------------------------------------ 246 (510)
T ss_pred ---Hh-------cC--CC-c------------------------------------------------------------
Confidence 00 00 00 0
Q ss_pred HHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNI 802 (1139)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1139)
. .
T Consensus 247 -----------~---------------------------------------------~---------------------- 248 (510)
T PRK09700 247 -----------Q---------------------------------------------N---------------------- 248 (510)
T ss_pred -----------c---------------------------------------------c----------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc
Q 048639 803 AHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRI 882 (1139)
Q Consensus 803 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 882 (1139)
......+. .... . .
T Consensus 249 ----------------------------------------------------------~~~~~~~~--~~~~----~--~ 262 (510)
T PRK09700 249 ----------------------------------------------------------RFNAMKEN--VSNL----A--H 262 (510)
T ss_pred ----------------------------------------------------------cccccccc--cccC----C--C
Confidence 00000000 0000 0 0
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-HHHh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-RRLR 961 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l-~~lR 961 (1139)
+..|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+. ..+|
T Consensus 263 ~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 337 (510)
T PRK09700 263 ETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVK 337 (510)
T ss_pred CcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHH
Confidence 11499999999762 28999999999999999999999999999999999999999999999999876543 4567
Q ss_pred hhceEEcccc---cccc-ccHHHHhccCCCc---------------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCC
Q 048639 962 SQIGLVQQEP---LLFS-CSIRNNICYGNEA---------------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 962 ~~i~~V~Qdp---~LF~-gTIreNL~~~~~~---------------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G 1022 (1139)
++++||||++ .+|. -|+++|+.++... ...+++.++++..++.. +..+.++
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~---- 407 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC------HSVNQNI---- 407 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC------CCccCcc----
Confidence 8899999984 5665 5999999864210 01123556666666530 1233333
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~Dr 1101 (1139)
..||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. ..++|||+|||+++.+.. |||
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tvi~vsHd~~~~~~~~d~ 478 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA---------DDGKVILMVSSELPEIITVCDR 478 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH---------HCCCEEEEEcCCHHHHHhhCCE
Confidence 4699999999999999999999999999999999999999999999764 334569999999998876 999
Q ss_pred EEEEeCCEEEEecChhH
Q 048639 1102 IVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1102 I~vl~~G~ive~G~~~e 1118 (1139)
|++|++|++++.+++.+
T Consensus 479 i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 479 IAVFCEGRLTQILTNRD 495 (510)
T ss_pred EEEEECCEEEEEecCcc
Confidence 99999999999887733
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-73 Score=688.26 Aligned_cols=452 Identities=24% Similarity=0.394 Sum_probs=354.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999986655443 3578
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMD------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
++||+|++.++.. |++||+.++... ....+.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 999999986421 1111111 1233455655 444455677889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccch
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 485 (1139)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~- 232 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS- 232 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHH-
Confidence 99999999999999999999999999999998864 47899999999999876 9999999999999877554321000
Q ss_pred HHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHH
Q 048639 486 FYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLR 565 (1139)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (1139)
. .
T Consensus 233 --------------------------------------------------------------------~-~--------- 234 (501)
T PRK10762 233 --------------------------------------------------------------------L-I--------- 234 (501)
T ss_pred --------------------------------------------------------------------H-H---------
Confidence 0 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 566 LVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYT 645 (1139)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 645 (1139)
..
T Consensus 235 --------------------------~~---------------------------------------------------- 236 (501)
T PRK10762 235 --------------------------EM---------------------------------------------------- 236 (501)
T ss_pred --------------------------HH----------------------------------------------------
Confidence 00
Q ss_pred HHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 048639 646 GVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLI 725 (1139)
Q Consensus 646 ~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~ 725 (1139)
++. ..
T Consensus 237 --------~~~--~~----------------------------------------------------------------- 241 (501)
T PRK10762 237 --------MVG--RK----------------------------------------------------------------- 241 (501)
T ss_pred --------hcC--CC-----------------------------------------------------------------
Confidence 000 00
Q ss_pred HHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 726 QAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHA 805 (1139)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1139)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccc
Q 048639 806 VALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGR 885 (1139)
Q Consensus 806 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 885 (1139)
. ....+.. +. ++. .-.
T Consensus 242 --------------~------------------------------------------~~~~~~~-~~-----~~~--~~~ 257 (501)
T PRK10762 242 --------------L------------------------------------------EDQYPRL-DK-----APG--EVR 257 (501)
T ss_pred --------------c------------------------------------------ccccccc-cc-----CCC--CcE
Confidence 0 0000000 00 000 114
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH-HHhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR~~i 964 (1139)
|+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|+++
T Consensus 258 l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 258 LKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred EEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 88999984 269999999999999999999999999999999999999999999999999876653 467889
Q ss_pred eEEcccc---ccc-cccHHHHhccCCC----c----CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 965 GLVQQEP---LLF-SCSIRNNICYGNE----A----AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 965 ~~V~Qdp---~LF-~gTIreNL~~~~~----~----~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
+||||+| .+| ..|+++|+.++.. . .+ ++++.++++..++.+ +..+. ....||||
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~----~~~~LSgG 399 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------PSMEQ----AIGLLSGG 399 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------CCccC----chhhCCHH
Confidence 9999997 344 4699999976311 0 11 234556666665521 11233 34579999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~ 1107 (1139)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+++|||+|||+++.+.. ||+|++|++
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~g~tviivtHd~~~~~~~~d~v~~l~~ 470 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK---------AEGLSIILVSSEMPEVLGMSDRILVMHE 470 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH---------HCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999864 334569999999999876 999999999
Q ss_pred CEEEEecChhHHh
Q 048639 1108 GEVVEMGSHSTLV 1120 (1139)
Q Consensus 1108 G~ive~G~~~eLl 1120 (1139)
|++++.|+++++.
T Consensus 471 G~i~~~~~~~~~~ 483 (501)
T PRK10762 471 GRISGEFTREQAT 483 (501)
T ss_pred CEEEEEeccccCC
Confidence 9999999988764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-72 Score=742.52 Aligned_cols=480 Identities=22% Similarity=0.342 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...+.+.+++ ++.|++||+++ ++|+++||+++|++.+++.+...+..++..++.+++.++++++.+|
T Consensus 1027 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~ 1105 (1522)
T TIGR00957 1027 MAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATP 1105 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666555 88999999997 8999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++++++++..++.+..++..+......+.+.+++.|+++|+++||+|++|+.+.+++.+..+...+......
T Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~ 1185 (1522)
T TIGR00957 1106 IAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSI 1185 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666777777777777777778888999999999999999999999999999988888777766655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVT-AKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQR 237 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~ 237 (1139)
....+......++.. +++++++.+.+. .+.+++|.+.+++.+......|+..+...+..+..+..|.+|+.++++.
T Consensus 1186 ~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~ 1262 (1522)
T TIGR00957 1186 VANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSET 1262 (1522)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444443333333322 233444555554 5789999999999999999999999999999999999999999999976
Q ss_pred CCCCccC-CCCcccc--CCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 238 KPRISYS-SKGKELE--KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 238 ~~~~~~~-~~~~~~~--~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
+++.... ....++. +.++.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|
T Consensus 1263 ~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G 1341 (1522)
T TIGR00957 1263 EKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG 1341 (1522)
T ss_pred CCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC
Confidence 5543211 1111111 245789999999999754 34799999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCC
Q 048639 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGV 394 (1139)
Q Consensus 315 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~ 394 (1139)
+|.+||+|+++++.+++|++|+||||||.||+|||||||.... +++++++++|++.+++++++.++|+|+||.+||+|.
T Consensus 1342 ~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1342 EIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred eEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 9999999999999999999999999999999999999998433 688999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 395 ~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|.
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred cChhhhhccchHHHHHHhh
Q 048639 475 GTHHSLLQTSDFYNRLFTM 493 (1139)
Q Consensus 475 g~~~~l~~~~~~~~~~~~~ 493 (1139)
|+|++|+++++.|+++++.
T Consensus 1501 G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHhCCCHHHHHHHH
Confidence 9999999988999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-73 Score=690.82 Aligned_cols=459 Identities=26% Similarity=0.454 Sum_probs=351.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc--CCCccEEEEC---------------
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY--DPSNGDILID--------------- 319 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~~~--------------- 319 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------CCC---HHHHhcceEEEecC-CCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHH
Q 048639 320 --------SLNIK-------DLD---LKSLRKNIGAVSQE-PSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSF 377 (1139)
Q Consensus 320 --------g~~~~-------~~~---~~~~~~~i~~v~Q~-~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~ 377 (1139)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. ....++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 33221 111 12456789999998 57776 499999987521 11222211 123344
Q ss_pred HHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCcc
Q 048639 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMS 455 (1139)
Q Consensus 378 i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~ 455 (1139)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5555 45555567788999999999999999999999999999999999999999999998874 3789999999999
Q ss_pred chhc-cCEEEEEeCcEEEEecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhc
Q 048639 456 TIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKREL 534 (1139)
Q Consensus 456 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (1139)
.+.. ||+|++|++|+++..|+++++...
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--------------------------------------------------- 259 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV--------------------------------------------------- 259 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHH---------------------------------------------------
Confidence 9875 999999999999876654432100
Q ss_pred ccccchhhhcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHH
Q 048639 535 SASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVG 614 (1139)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (1139)
+
T Consensus 260 -------------------~------------------------------------------------------------ 260 (520)
T TIGR03269 260 -------------------F------------------------------------------------------------ 260 (520)
T ss_pred -------------------H------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 048639 615 LFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSI 694 (1139)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~ 694 (1139)
.. .
T Consensus 261 ----------------------------------------~~--~----------------------------------- 263 (520)
T TIGR03269 261 ----------------------------------------ME--G----------------------------------- 263 (520)
T ss_pred ----------------------------------------Hh--h-----------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHH
Q 048639 695 LIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKIS 774 (1139)
Q Consensus 695 ~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~ 774 (1139)
+ .
T Consensus 264 -----------~---------------------------~---------------------------------------- 265 (520)
T TIGR03269 264 -----------V---------------------------S---------------------------------------- 265 (520)
T ss_pred -----------c---------------------------h----------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 775 LEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAIT 854 (1139)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (1139)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCC--CCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHH
Q 048639 855 VLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPS--RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLA 932 (1139)
Q Consensus 855 ~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~--~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~ 932 (1139)
+ ..... .. +. . ...|+++||+++|++ +...++|+|+||+|++||++||+||||||||||++
T Consensus 266 ---~----~~~~~---~~-~~----~--~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~ 328 (520)
T TIGR03269 266 ---E----VEKEC---EV-EV----G--EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSK 328 (520)
T ss_pred ---h----hcccc---cc-CC----C--CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 0 00000 00 00 0 124999999999963 11246999999999999999999999999999999
Q ss_pred HHhccccCCccEEEEC-Cc---ccCCCC---hHHHhhhceEEcccccccc-ccHHHHhccCC----Cc-CCHHHHHHHHH
Q 048639 933 LLLRFYDPNEGIILID-GK---GIKEYN---LRRLRSQIGLVQQEPLLFS-CSIRNNICYGN----EA-ASEAEIVEVSK 999 (1139)
Q Consensus 933 lL~rl~~p~~G~I~id-G~---di~~~~---l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~----~~-~sd~ei~~al~ 999 (1139)
+|.|+++|++|+|.++ |. ++...+ ...+|++++||||++.+|. .|+++|+.++. +. ..++++.++++
T Consensus 329 ~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~ 408 (520)
T TIGR03269 329 IIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLK 408 (520)
T ss_pred HHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999996 64 334332 2356778999999998886 59999997521 11 12345667788
Q ss_pred HcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccc
Q 048639 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE 1079 (1139)
Q Consensus 1000 ~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~ 1079 (1139)
..++.+.- .++-++.+ ...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++...
T Consensus 409 ~~~l~~~~--~~~~~~~~----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~------- 475 (520)
T TIGR03269 409 MVGFDEEK--AEEILDKY----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE------- 475 (520)
T ss_pred hCCCCCcc--chhhhhCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-------
Confidence 87774310 00001222 357999999999999999999999999999999999999999999987641
Q ss_pred cCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhh
Q 048639 1080 LASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1080 ~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
..++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 476 -~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 476 -EMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred -HcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 224569999999999976 99999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-73 Score=605.85 Aligned_cols=474 Identities=29% Similarity=0.475 Sum_probs=368.5
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCCCHH
Q 048639 256 NIDIRDVCFAYPSR-PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 329 (1139)
-++++|++..|... ....++++|||+|++||.+||||+||||||-..+.++|+++. -+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 48899999888532 235699999999999999999999999999999999999874 379999999999888877
Q ss_pred HHh----cceEEEecCCC--CCcc-cHH----HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCC
Q 048639 330 SLR----KNIGAVSQEPS--LFTG-SLM----DNIKVGNMDADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQL 396 (1139)
Q Consensus 330 ~~~----~~i~~v~Q~~~--l~~~-ti~----~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~L 396 (1139)
.+| .+|+++||+|. |-+- ||- |-|.+-. . +..+...+.+.+.++.. |+ -.-.+...+.+|
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr-g-----~~~~~Ar~r~lelL~~VgI~~-p~~rl~~yPHeL 158 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR-G-----LSRAAARARALELLELVGIPE-PEKRLDAYPHEL 158 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh-c-----ccHHHHHHHHHHHHHHcCCCc-hhhhhhhCCccc
Confidence 776 37999999994 3221 443 4443321 1 11122222333333332 32 124567788999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEE
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
||||||||.||.||+.+|++||-||||.|||...+.+|.+.|+++.+ |..+++||||+..+++ ||||+||.+|+++|
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999998753 8999999999999987 99999999999999
Q ss_pred ecChhhhhccch-HHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhh
Q 048639 474 TGTHHSLLQTSD-FYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFF 552 (1139)
Q Consensus 474 ~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1139)
+|+.+++.+.+. .|.+.
T Consensus 239 ~~~t~~lF~~PqHpYTr~-------------------------------------------------------------- 256 (534)
T COG4172 239 TGTTETLFAAPQHPYTRK-------------------------------------------------------------- 256 (534)
T ss_pred cCcHHHHhhCCCChHHHH--------------------------------------------------------------
Confidence 998776643210 00000
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 553 RIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVG 632 (1139)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1139)
T Consensus 257 -------------------------------------------------------------------------------- 256 (534)
T COG4172 257 -------------------------------------------------------------------------------- 256 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 048639 633 EKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVA 712 (1139)
Q Consensus 633 ~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~ 712 (1139)
T Consensus 257 -------------------------------------------------------------------------------- 256 (534)
T COG4172 257 -------------------------------------------------------------------------------- 256 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 713 WAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVI 792 (1139)
Q Consensus 713 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1139)
T Consensus 257 -------------------------------------------------------------------------------- 256 (534)
T COG4172 257 -------------------------------------------------------------------------------- 256 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 048639 793 QGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPD 872 (1139)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 872 (1139)
+++.+|.-.+
T Consensus 257 ---------------------------------------------------------------------Ll~aeP~g~~- 266 (534)
T COG4172 257 ---------------------------------------------------------------------LLAAEPSGDP- 266 (534)
T ss_pred ---------------------------------------------------------------------HHhcCCCCCC-
Confidence 0000111100
Q ss_pred CCCCCCCCCccccEEEEeEEEECCCCC--------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE
Q 048639 873 APESSESGRIKGRIEFQNIKFNYPSRP--------EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944 (1139)
Q Consensus 873 ~~~~~~~~~~~g~I~~~nvsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~ 944 (1139)
.+.+...+--++.+||...||-++ ...++++|||+.++||.+||||+|||||||+-.+|+|+.+++ |+
T Consensus 267 ---~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~ 342 (534)
T COG4172 267 ---PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE 342 (534)
T ss_pred ---CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce
Confidence 001111123478888888886432 134899999999999999999999999999999999999865 99
Q ss_pred EEECCcccCCCChHH---HhhhceEEccccc--cc-cccHHHHh----ccCCCcC----CHHHHHHHHHHcCchHHHhhC
Q 048639 945 ILIDGKGIKEYNLRR---LRSQIGLVQQEPL--LF-SCSIRNNI----CYGNEAA----SEAEIVEVSKKANIHDFISSL 1010 (1139)
Q Consensus 945 I~idG~di~~~~l~~---lR~~i~~V~Qdp~--LF-~gTIreNL----~~~~~~~----sd~ei~~al~~~~l~~~i~~l 1010 (1139)
|.++|.||..++.+. +|+++-+|+|||+ |= ..||-+=| ....|.. .++++.+|++.+||+.-...
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~- 421 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN- 421 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh-
Confidence 999999999998776 6899999999996 21 23444433 3333333 35678999999999764322
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEe
Q 048639 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA 1090 (1139)
Q Consensus 1011 p~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~Ia 1090 (1139)
.-...||||||||||||||++-+|++++||||||+||.--.++|.+.++++.. +.+-+-++|+
T Consensus 422 ---------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~--------k~~LsYLFIS 484 (534)
T COG4172 422 ---------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ--------KHGLSYLFIS 484 (534)
T ss_pred ---------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH--------HhCCeEEEEe
Confidence 12346999999999999999999999999999999999999999999987741 3344699999
Q ss_pred cCchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChHHHH
Q 048639 1091 HRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1091 Hrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
|+|..++. ||+|+||.+|+|||+|+-++++++|+..|.+-
T Consensus 485 HDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 485 HDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred ccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999987 99999999999999999999999999888653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-73 Score=685.75 Aligned_cols=454 Identities=24% Similarity=0.373 Sum_probs=351.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-HHHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 359999999999999999999999999999999999999999999999999865543 456788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMD-----ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
|+||+|++.+++. |++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 1111111 1233456665 4444456678899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchH
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 486 (1139)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..++..+...
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---- 229 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---- 229 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence 9999999999999999999999999999998864 47899999999999876 99999999999975442110000
Q ss_pred HHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHHH
Q 048639 487 YNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRL 566 (1139)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (1139)
.+ . + .
T Consensus 230 ----------------------------------------------------~~--~----------~-~---------- 234 (501)
T PRK11288 230 ----------------------------------------------------RD--Q----------L-V---------- 234 (501)
T ss_pred ----------------------------------------------------HH--H----------H-H----------
Confidence 00 0 0 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 567 VVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTG 646 (1139)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 646 (1139)
+.
T Consensus 235 ------------------------------------------------------------------------------~~ 236 (501)
T PRK11288 235 ------------------------------------------------------------------------------QA 236 (501)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 048639 647 VLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQ 726 (1139)
Q Consensus 647 ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~ 726 (1139)
+ .. .. .
T Consensus 237 ~-------~~--~~-~---------------------------------------------------------------- 242 (501)
T PRK11288 237 M-------VG--RE-I---------------------------------------------------------------- 242 (501)
T ss_pred h-------cC--CC-c----------------------------------------------------------------
Confidence 0 00 00 0
Q ss_pred HHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 727 AKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAV 806 (1139)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1139)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccE
Q 048639 807 ALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRI 886 (1139)
Q Consensus 807 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 886 (1139)
. ... ... +.. . ....+
T Consensus 243 --------------~---------------------------------------~~~--~~~--~~~-----~--~~~~l 258 (501)
T PRK11288 243 --------------G---------------------------------------DIY--GYR--PRP-----L--GEVRL 258 (501)
T ss_pred --------------c---------------------------------------ccc--ccc--ccC-----C--CCcEE
Confidence 0 000 000 000 0 01148
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-HHHhhhce
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-RRLRSQIG 965 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l-~~lR~~i~ 965 (1139)
+++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|++++
T Consensus 259 ~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 259 RLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 89999842 38999999999999999999999999999999999999999999999998875433 45678899
Q ss_pred EEccccc---cc-cccHHHHhccCCC-c-----------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 966 LVQQEPL---LF-SCSIRNNICYGNE-A-----------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 966 ~V~Qdp~---LF-~gTIreNL~~~~~-~-----------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
|+||+|. +| ..|+.+|+.++.. . ..++++.+.++..++.+ +-.++++ ..|||||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGq 401 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT------PSREQLI----MNLSGGN 401 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc------CCccCcc----ccCCHHH
Confidence 9999973 55 4799999976421 0 01134556666665521 1123333 4799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. ..+.|||+|||+++.+.. ||+|++|++|
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tviivsHd~~~~~~~~d~i~~l~~g 472 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA---------AQGVAVLFVSSDLPEVLGVADRIVVMREG 472 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999998764 334459999999999976 9999999999
Q ss_pred EEEEecChhHHh
Q 048639 1109 EVVEMGSHSTLV 1120 (1139)
Q Consensus 1109 ~ive~G~~~eLl 1120 (1139)
++++.|++++..
T Consensus 473 ~i~~~~~~~~~~ 484 (501)
T PRK11288 473 RIAGELAREQAT 484 (501)
T ss_pred EEEEEEccccCC
Confidence 999999988765
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=684.47 Aligned_cols=458 Identities=23% Similarity=0.387 Sum_probs=352.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHH-Hhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKS-LRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~ 333 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998766544 457
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCCCccc-cccCCCCChHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNMD------ADDEQIYNASMMANAHSFISQLPDQYSTEL-GQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i-~~~g~~LSgGqkqRi~ 405 (1139)
.++||+|++.++.. |++||+.++... ...++.. ..+.+.++.+ |+.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988865 999999886421 1111111 1233455555 333222 3457799999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998864 47899999999999876 999999999999866533211000
Q ss_pred chHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhH
Q 048639 484 SDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNEREL 563 (1139)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1139)
.. .
T Consensus 232 ---------------------------------------------------------------------~~-~------- 234 (500)
T TIGR02633 232 ---------------------------------------------------------------------DI-I------- 234 (500)
T ss_pred ---------------------------------------------------------------------HH-H-------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTL 643 (1139)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 643 (1139)
.
T Consensus 235 ----------------------------~--------------------------------------------------- 235 (500)
T TIGR02633 235 ----------------------------T--------------------------------------------------- 235 (500)
T ss_pred ----------------------------H---------------------------------------------------
Confidence 0
Q ss_pred HHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 048639 644 YTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGG 723 (1139)
Q Consensus 644 ~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~ 723 (1139)
.. +.+ .
T Consensus 236 --~~-------~~~-~---------------------------------------------------------------- 241 (500)
T TIGR02633 236 --MM-------VGR-E---------------------------------------------------------------- 241 (500)
T ss_pred --HH-------hCc-c----------------------------------------------------------------
Confidence 00 000 0
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 724 LIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803 (1139)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1139)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcc
Q 048639 804 HAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIK 883 (1139)
Q Consensus 804 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1139)
.. . ..+.. +. + .. +
T Consensus 242 ----------------~~---------------------------------------~---~~~~~-~~-~----~~--~ 255 (500)
T TIGR02633 242 ----------------IT---------------------------------------S---LYPHE-PH-E----IG--D 255 (500)
T ss_pred ----------------cc---------------------------------------c---ccccc-cc-C----CC--C
Confidence 00 0 00000 00 0 00 1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccCCCCh-HHHh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIKEYNL-RRLR 961 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~~~l-~~lR 961 (1139)
--|+++|++++|+..++.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 148999999999422234699999999999999999999999999999999999995 89999999999865443 4678
Q ss_pred hhceEEcccc---cccc-ccHHHHhccCCC-------cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 962 SQIGLVQQEP---LLFS-CSIRNNICYGNE-------AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 962 ~~i~~V~Qdp---~LF~-gTIreNL~~~~~-------~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
++++||||++ .+|. .|+++|+.++.. ... .+++.+++++.++.+ .-.+.++ ..||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LS 405 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----GRLS 405 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----ccCC
Confidence 8999999996 3555 699999986421 011 234566666666521 0123333 4699
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+++|++|||||||++||+.+.+.+++.|+++. ..++|||+|||+++.+.. ||||++|
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tviivsHd~~~~~~~~d~v~~l 476 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA---------QEGVAIIVVSSELAEVLGLSDRVLVI 476 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999998764 334569999999999976 9999999
Q ss_pred eCCEEEEecChhHH
Q 048639 1106 DKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1106 ~~G~ive~G~~~eL 1119 (1139)
++|+++..++..++
T Consensus 477 ~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 477 GEGKLKGDFVNHAL 490 (500)
T ss_pred ECCEEEEEEccccC
Confidence 99999987765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-71 Score=674.16 Aligned_cols=442 Identities=26% Similarity=0.356 Sum_probs=399.1
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+++++..++.+
T Consensus 88 ~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~ 166 (529)
T TIGR02857 88 AALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGW 166 (529)
T ss_pred HhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999987 89999999999999999999988888888888888888899999999999998888988888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+.......+..++..+..++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (529)
T TIGR02857 167 AAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888999999999999999999999999999999999999999999888888877777776666666666655555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
+++++.+.+|.+|+|.+++++.+......|+..+...+..++.+..+.+|+.++++.+++.... . .......+.|+++
T Consensus 247 ~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~-~~~~~~~~~i~~~ 324 (529)
T TIGR02857 247 VYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-A-PVTAAPAPSLEFS 324 (529)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-c-CCCCCCCCeEEEE
Confidence 6677777799999999999988888888999999999999999999999999999754322111 1 1111112479999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||+|
T Consensus 325 ~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q 403 (529)
T TIGR02857 325 GLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ 403 (529)
T ss_pred EEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcC
Confidence 999999854 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++||+|||.++.++.+++++.++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|+|+|||
T Consensus 404 ~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 404 HPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred CCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEE
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVV 466 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l 466 (1139)
||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-71 Score=717.94 Aligned_cols=220 Identities=21% Similarity=0.404 Sum_probs=189.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|+++.|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3569999999999999999999999999999999999999999999999999864 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|||||++.+++. |++|||.++.. ....++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999875 99999987521 11222211 1233455655 5666677888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|+|+|||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998779999999999999976 999999999999999999988653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-72 Score=678.23 Aligned_cols=464 Identities=22% Similarity=0.373 Sum_probs=357.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh-cc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR-KN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999963 4599999999999999999999999999999999999999999999999998877665544 57
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
++|++|++.++.. |++||+.++.... .+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988875 9999999874321 1111 1223445554 444455677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.... ....+.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~~~~ 237 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-IIQAIT 237 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-HHHHHh
Confidence 99999999999999999999999998864 47999999999999875 9999999999999988876653210 000000
Q ss_pred hhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHHHHHHHH
Q 048639 492 TMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTV 571 (1139)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1139)
T Consensus 238 -------------------------------------------------------------------------------- 237 (510)
T PRK15439 238 -------------------------------------------------------------------------------- 237 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 048639 572 AAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNE 651 (1139)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~ 651 (1139)
...
T Consensus 238 -----------------------------------------------------------------------------~~~ 240 (510)
T PRK15439 238 -----------------------------------------------------------------------------PAA 240 (510)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 000
Q ss_pred CcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048639 652 IAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQ 731 (1139)
Q Consensus 652 ~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~ 731 (1139)
. . .+ ..
T Consensus 241 ~---~--~~---------------------------------------------------------------------~~ 246 (510)
T PRK15439 241 R---E--KS---------------------------------------------------------------------LS 246 (510)
T ss_pred c---c--cc---------------------------------------------------------------------cc
Confidence 0 0 00 00
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 732 GFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYT 811 (1139)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1139)
. . ..
T Consensus 247 ~-~--------------------------------------------~~------------------------------- 250 (510)
T PRK15439 247 A-S--------------------------------------------QK------------------------------- 250 (510)
T ss_pred c-c--------------------------------------------cc-------------------------------
Confidence 0 0 00
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeE
Q 048639 812 AVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNI 891 (1139)
Q Consensus 812 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nv 891 (1139)
. .. ..+.. ... . +. .+-.|+++|+
T Consensus 251 -----------------------------------------------~-~~-~~~~~-~~~---~-~~--~~~~l~~~~l 274 (510)
T PRK15439 251 -----------------------------------------------L-WL-ELPGN-RRQ---Q-AA--GAPVLTVEDL 274 (510)
T ss_pred -----------------------------------------------c-cc-ccccc-ccc---c-CC--CCceEEEeCC
Confidence 0 00 00000 000 0 00 0114899999
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-HhhhceEEccc
Q 048639 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQIGLVQQE 970 (1139)
Q Consensus 892 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i~~V~Qd 970 (1139)
+. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+... +|++++||||+
T Consensus 275 ~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 275 TG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred CC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 83 1599999999999999999999999999999999999999999999999998776654 46789999999
Q ss_pred c---cccc-ccHHHHhccC----CC-----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 971 P---LLFS-CSIRNNICYG----NE-----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 971 p---~LF~-gTIreNL~~~----~~-----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+ .+|. .|+.+|+... .+ ...++++.++++..++. ++..+.+ ...||||||||++|||
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~LSgG~kqrl~la~ 416 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQA----ARTLSGGNQQKVLIAK 416 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCc----cccCCcHHHHHHHHHH
Confidence 6 3565 5999998532 01 00122355566666553 0123333 3569999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|+||||||||++||+.+.+.+.+.|+++. ..++|+|+|||+++.+.+ ||||++|++|+++..|++
T Consensus 417 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~---------~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 417 CLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA---------AQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 9999999999999999999999999999999764 234569999999999986 999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++..+
T Consensus 488 ~~~~~~ 493 (510)
T PRK15439 488 AAINVD 493 (510)
T ss_pred ccCCHH
Confidence 887643
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-70 Score=664.52 Aligned_cols=525 Identities=18% Similarity=0.173 Sum_probs=416.1
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 561 RELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLR 640 (1139)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 640 (1139)
+.++.+++++++..+.++.....++++..+++.... ... .....++++.++..++.++..++....+.+...++|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR 89 (555)
T TIGR01194 15 PFPAITAFSIALGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLR 89 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566665655555555544444444444321100 000 111223344556667788888889999999999999
Q ss_pred HHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 048639 641 RTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHF 720 (1139)
Q Consensus 641 ~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~ 720 (1139)
.++|+++++.|++||+ ++++|++++|+++|++.++..+.. +..++..++.++++++++++++|.+++++++.+|+.+
T Consensus 90 ~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~ 166 (555)
T TIGR01194 90 IALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGT 166 (555)
T ss_pred HHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 678999999999999999998864 6777777888888888899999999999888888877
Q ss_pred HHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 721 IGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEE--NILQKAKISLEKTKRSSRKESIKYGVIQGFSLC 798 (1139)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1139)
+...+..+..++..++.++..++..+.+.|.+.|++++|+|+.++ ...+++.+..++..+...+..........+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (555)
T TIGR01194 167 AAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQL 246 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665555566667777888999999999999999999854 456677777766666555444333333333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CC--
Q 048639 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPD--AP-- 874 (1139)
Q Consensus 799 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~--~~-- 874 (1139)
+..+...+.++++.+. +.++++.++++..+......|+..+...+..+..+..+.+|+.++++.+.++++. .+
T Consensus 247 ~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~ 323 (555)
T TIGR01194 247 LFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDA 323 (555)
T ss_pred HHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 3333333444444432 6889999999998999999999999999999999999999999997532211110 01
Q ss_pred CCC---CCCCccccEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 875 ESS---ESGRIKGRIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 875 ~~~---~~~~~~g~I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
... ++....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+||
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g 403 (555)
T TIGR01194 324 DNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403 (555)
T ss_pred ccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 000 1112346799999999997532 23699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 950 ~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+|+++++.+++|+++++|+|||++|++|+++|+ .++.++++++++++.+++++++.++|+||||. .+|||||
T Consensus 404 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq 475 (555)
T TIGR01194 404 AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQ 475 (555)
T ss_pred EECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHH
Confidence 999999999999999999999999999999996 35678999999999999999999999999995 6899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHh-hCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA-LNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
||||+||||++++|+|||||||||+||++|++.+++.+.+ .. .+++|+|+||||++++..||+|+||++|
T Consensus 476 ~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~---------~~~~tiiiisH~~~~~~~~d~i~~l~~G 546 (555)
T TIGR01194 476 QKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK---------RQGKTIIIISHDDQYFELADQIIKLAAG 546 (555)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---------hCCCEEEEEeccHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999987643 21 2234599999999999999999999999
Q ss_pred EEEEe
Q 048639 1109 EVVEM 1113 (1139)
Q Consensus 1109 ~ive~ 1113 (1139)
+++|.
T Consensus 547 ~i~~~ 551 (555)
T TIGR01194 547 CIVKD 551 (555)
T ss_pred EEEEe
Confidence 99975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-72 Score=604.29 Aligned_cols=469 Identities=31% Similarity=0.441 Sum_probs=413.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATF-FSGVLIAVICCWEVSLLIFLVVPMILVIGATYT 99 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 99 (1139)
.++++.|+-+. .+|.+..-+......|+......+...+..++-+ +.++++...++|+.+++.++++.++.++.....
T Consensus 26 ~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s 104 (497)
T COG5265 26 HSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVS 104 (497)
T ss_pred Hhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeeh
Confidence 67888888876 7898888777777777776666666665555433 444555667899999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 100 KRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALI 179 (1139)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1139)
.+.....+...++.+++++...++|-+.++||.|+.|+.+..+|...++.+.+...+...-.++....-..+........
T Consensus 105 ~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~ 184 (497)
T COG5265 105 DWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVM 184 (497)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777788888899999999999999999999999999999999999999988887766544444444344444445555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCcccc-CCCccEE
Q 048639 180 IWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELE-KIDGNID 258 (1139)
Q Consensus 180 ~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~i~ 258 (1139)
...+...+..|.+|.|+++....++.+...|+..+......+.+++.-.++.+++++.+.++.+....+... ...+.+.
T Consensus 185 m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~ 264 (497)
T COG5265 185 MTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVA 264 (497)
T ss_pred HhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEE
Confidence 667778888999999999998889999999999999999999999999999999998766553332222222 3356799
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
|+||+|.|.. .+++|+++||++++|+++|+|||||+||||++++|.|+|++++|.|.+||+|+++...+.+|+.||.|
T Consensus 265 F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 265 FINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 9999999974 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEE
Q 048639 339 SQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILL 418 (1139)
Q Consensus 339 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ill 418 (1139)
|||..||++|+..||.+|+|+++++++..+++.++.+++++.+|+||+|.|||+|-.||||||||+||||+++++|+||+
T Consensus 343 PQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~ 422 (497)
T COG5265 343 PQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILI 422 (497)
T ss_pred cccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 419 LDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 419 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
|||+|||||.+||+.|+..|+...+|+|.++|+||++++.+||.|+||++|+|+|.|+|++|++..|.|+++|.
T Consensus 423 ~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 423 LDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred EehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=726.15 Aligned_cols=477 Identities=22% Similarity=0.296 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...+.+..++ ++.|++||+++ ++|+++||+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 975 ~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~ 1053 (1622)
T PLN03130 975 YWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVST 1053 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655 89999999997 8999999999999999999999889999988888888888888777
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPM-ILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGE 157 (1139)
Q Consensus 79 ~l~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 157 (1139)
...+ .++.+++ ++.+..++.+..++..+......+...+++.|+++|+++||+|++++.+.+++.+..+...+ .
T Consensus 1054 ~~~~-~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~----~ 1128 (1622)
T PLN03130 1054 ISLW-AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIR----F 1128 (1622)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHH----H
Confidence 4332 2222222 22333444455555666666777889999999999999999999998776666555444333 2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 158 ALIKGVGLGMFQSVT-FCCWALIIWVGAVVVTAKR---------STGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAA 227 (1139)
Q Consensus 158 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~v~~~~---------l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 227 (1139)
.+.......+..+.. .+..+++++.+.+.+..+. .++|.+++ +......++..+......+..+..+
T Consensus 1129 ~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~~~l~~l~~~~~~~e~~~~s 1205 (1622)
T PLN03130 1129 TLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNA 1205 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222221111 1112222233334344332 22333333 3444445566666667778899999
Q ss_pred HHHHHHHhccCCCCccC-CCCccc--cCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHH
Q 048639 228 GFEIFQVIQRKPRISYS-SKGKEL--EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL 304 (1139)
Q Consensus 228 ~~ri~~~l~~~~~~~~~-~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~ 304 (1139)
.+|+.++++.+++.+.. ....++ .+.++.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||||||||+++
T Consensus 1206 veRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~l 1284 (1622)
T PLN03130 1206 VERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNA 1284 (1622)
T ss_pred HHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999866543211 111111 1235689999999999643 3579999999999999999999999999999999
Q ss_pred HHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 048639 305 VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQ 384 (1139)
Q Consensus 305 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g 384 (1139)
|.|+|+|++|+|.+||+|+++++++++|++|++|||||.||+|||||||.+++ +++++++++|++.+++++++.++|+|
T Consensus 1285 L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1285 LFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999987 57899999999999999999999999
Q ss_pred CCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEE
Q 048639 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIA 464 (1139)
Q Consensus 385 ~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~ 464 (1139)
+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCcEEEEecChhhhhcc-chHHHHHHhhcc
Q 048639 465 VVEDGQVTETGTHHSLLQT-SDFYNRLFTMQN 495 (1139)
Q Consensus 465 ~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 495 (1139)
||++|+|+|.|+|++|+++ ++.|++++....
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999987 689999987654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=671.86 Aligned_cols=452 Identities=24% Similarity=0.373 Sum_probs=347.9
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-HHHhcceEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRKNIGA 337 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 337 (1139)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876544 345678999
Q ss_pred EecCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 338 VSQEPSLFT-GSLMDNIKVGNMD-----ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 338 v~Q~~~l~~-~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|++.++. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 5999999876421 1112111 1233456665 5555567778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchHHHH
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 489 (1139)
.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998864 47899999999999875 999999999999987765432100
Q ss_pred HHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHHHHHH
Q 048639 490 LFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVG 569 (1139)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (1139)
. . .
T Consensus 225 -----------------------------------------------------~----------~-~------------- 227 (491)
T PRK10982 225 -----------------------------------------------------K----------I-I------------- 227 (491)
T ss_pred -----------------------------------------------------H----------H-H-------------
Confidence 0 0 0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048639 570 TVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLR 649 (1139)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 649 (1139)
+.+
T Consensus 228 ---------------------------------------------------------------------------~~~-- 230 (491)
T PRK10982 228 ---------------------------------------------------------------------------AMM-- 230 (491)
T ss_pred ---------------------------------------------------------------------------HHH--
Confidence 000
Q ss_pred CCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 650 NEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729 (1139)
Q Consensus 650 ~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~ 729 (1139)
+. ..
T Consensus 231 -----~~--~~--------------------------------------------------------------------- 234 (491)
T PRK10982 231 -----VG--RS--------------------------------------------------------------------- 234 (491)
T ss_pred -----hC--CC---------------------------------------------------------------------
Confidence 00 00
Q ss_pred hhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALW 809 (1139)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1139)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEE
Q 048639 810 YTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQ 889 (1139)
Q Consensus 810 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 889 (1139)
. . . ..+.+ ... + ....|+++
T Consensus 235 ----------~------------------------------------~---~--~~~~~--~~~-----~--~~~~i~~~ 254 (491)
T PRK10982 235 ----------L------------------------------------T---Q--RFPDK--ENK-----P--GEVILEVR 254 (491)
T ss_pred ----------c------------------------------------c---c--ccccc--cCC-----C--CCcEEEEe
Confidence 0 0 0 00000 000 0 01248999
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH-HHhhhceEEc
Q 048639 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQIGLVQ 968 (1139)
Q Consensus 890 nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR~~i~~V~ 968 (1139)
|++++| + ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|+|
T Consensus 255 ~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~ 329 (491)
T PRK10982 255 NLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVT 329 (491)
T ss_pred Cccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcC
Confidence 999975 1 489999999999999999999999999999999999999999999999999876654 4577899999
Q ss_pred cccc---ccc-ccHHHH-----hccCCC--c-CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 969 QEPL---LFS-CSIRNN-----ICYGNE--A-AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 969 Qdp~---LF~-gTIreN-----L~~~~~--~-~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
|++. +|. .|+++| +..... . .+ ++++.+.++..++.+ +.++.+ ...||||||||
T Consensus 330 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~----~~~LSgGq~qr 399 (491)
T PRK10982 330 EERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT------PGHRTQ----IGSLSGGNQQK 399 (491)
T ss_pred CchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC------CCcccc----cccCCcHHHHH
Confidence 9963 554 466666 432111 0 11 223444555544421 112333 45799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++||||++++|+||||||||++||+.+.+.+.+.|+++. ..+.|||+|||+++.+.. |||+++|++|+++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~---------~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA---------KKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH---------HCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998764 233459999999999976 9999999999999
Q ss_pred EecChhHHh
Q 048639 1112 EMGSHSTLV 1120 (1139)
Q Consensus 1112 e~G~~~eLl 1120 (1139)
..++++++.
T Consensus 471 ~~~~~~~~~ 479 (491)
T PRK10982 471 GIVDTKTTT 479 (491)
T ss_pred EEEccccCC
Confidence 888765443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-70 Score=721.78 Aligned_cols=471 Identities=19% Similarity=0.280 Sum_probs=399.6
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|++|||++ ++|+++||+++|++.+++.+...+..++..++.+++.++++++.+|.+.++++.++.++..+..++.+
T Consensus 1042 l~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~ 1120 (1560)
T PTZ00243 1042 SRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNS 1120 (1560)
T ss_pred HcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 89999999999999999999999999999998888888888888885544433333334445566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
..++..+......+...+++.|+++|+++||+|++|+.+.++|.+..+...+..........+......++..+..+++.
T Consensus 1121 ~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~ 1200 (1560)
T PTZ00243 1121 ANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIA 1200 (1560)
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778889999999999999999999999999999999888887776665555554444444444444433333
Q ss_pred HHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccC--------------
Q 048639 181 WVGAVVV--TAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYS-------------- 244 (1139)
Q Consensus 181 ~~g~~~v--~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-------------- 244 (1139)
+++.+.. ..+.+++|.+..++.+...+..++..+...+..+..+..+.+|+.++++..|+....
T Consensus 1201 ~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~ 1280 (1560)
T PTZ00243 1201 LIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTG 1280 (1560)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccc
Confidence 4444433 344578888877777778888899999999999999999999999999643321000
Q ss_pred ------------CC-Cc---cccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 245 ------------SK-GK---ELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 245 ------------~~-~~---~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.. .. +.....+.|+|+||+|+|++. .+++|+||||+|++||++||||+||||||||+++|+|+
T Consensus 1281 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl 1359 (1560)
T PTZ00243 1281 MAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM 1359 (1560)
T ss_pred cccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 00 00 001124679999999999753 35699999999999999999999999999999999999
Q ss_pred cCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc
Q 048639 309 YDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388 (1139)
Q Consensus 309 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 388 (1139)
++|++|+|.+||+|+++++.+++|++|+||||+|.||+|||||||..+. +++++++++|++.+++++++..+|+|+||.
T Consensus 1360 ~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~ 1438 (1560)
T PTZ00243 1360 VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSR 1438 (1560)
T ss_pred CCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCccccccc
Confidence 9999999999999999999999999999999999999999999998764 688999999999999999999999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEe
Q 048639 389 LGQRGVQLSGGQKQRIAIARAIVKN-PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 389 i~~~g~~LSgGqkqRi~lARal~~~-~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
+||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.|++..+++|+|+||||++++.+||+|+||+
T Consensus 1439 vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518 (1560)
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEE
Confidence 9999999999999999999999996 899999999999999999999999999888999999999999999999999999
Q ss_pred CcEEEEecChhhhhcc-chHHHHHHhhc
Q 048639 468 DGQVTETGTHHSLLQT-SDFYNRLFTMQ 494 (1139)
Q Consensus 468 ~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 494 (1139)
+|+|++.|+|+||+++ ++.|++++..+
T Consensus 1519 ~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1519 HGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999974 78999998654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=660.94 Aligned_cols=444 Identities=23% Similarity=0.345 Sum_probs=397.0
Q ss_pred chhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 34 TGKVITGVSSHMSVIRDAIGE-KLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLY 112 (1139)
Q Consensus 34 ~G~l~~~~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1139)
.+...+++++|++.+++.+.. .+..++..++.++. ++++++++|.+++++++.+|+++++..++.++.++..++.++.
T Consensus 97 ~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~ 175 (544)
T TIGR01842 97 GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEA 175 (544)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466789999999999998877 44555555554444 4678899999999888888888778888888888888899999
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048639 113 LSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRS 192 (1139)
Q Consensus 113 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l 192 (1139)
.+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..++..+..++++++|++++.+|.+
T Consensus 176 ~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~i 255 (544)
T TIGR01842 176 SIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEI 255 (544)
T ss_pred HHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999998888888777777777777676666777788899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCC
Q 048639 193 TGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQ 272 (1139)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~ 272 (1139)
|+|.+++++.+......|+..+...+..++.+..+.+|+.++++.+++.... ...+..++.++++|++|+|++. ++
T Consensus 256 t~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~i~~~~v~~~y~~~-~~ 331 (544)
T TIGR01842 256 TPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPEPEGHLSVENVTIVPPGG-KK 331 (544)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCCCCCeEEEEEEEEEcCCC-Cc
Confidence 9999999999998889999999999999999999999999999765442111 1112233579999999999743 35
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|+.++||||+|++|++|++||
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 411 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAEN 411 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~ 432 (1139)
|.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|++||||||||+||+++++
T Consensus 412 i~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 412 IARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 99887778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhc
Q 048639 433 LVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 433 ~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+.+.+.++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999998875 6899999999999888899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=720.77 Aligned_cols=482 Identities=20% Similarity=0.273 Sum_probs=380.6
Q ss_pred HHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 048639 7 ILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICC 77 (1139)
Q Consensus 7 ~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 77 (1139)
.+++...+.+.+++ ++.|++||+++ ++|+++||+++|++.+++.+...+..++..++.+++.++++++++
T Consensus 971 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~ 1049 (1495)
T PLN03232 971 SFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVS 1049 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666555 89999999997 899999999999999999999988888888888888777777776
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Q 048639 78 WEVSLLIFLVVPMIL-VIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRG 156 (1139)
Q Consensus 78 ~~l~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (1139)
+... +.++.+++++ ++..++.+..++..+......+...+++.|+++|+++||+|++++.+.+++.+..+...+....
T Consensus 1050 ~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1495)
T PLN03232 1050 TISL-WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128 (1495)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5332 2222222222 2233333444556666677788899999999999999999999998777666655544433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 157 EALIKGVGLGMFQSVTFCCWALIIWVGAVVVTA-KRST-----GGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFE 230 (1139)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-~~l~-----~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r 230 (1139)
......+..... ..+..+++++.|.+.+.. +.+. .+.+..++.+......++..+...+..+..+..+.+|
T Consensus 1129 ~~~~~~wl~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eR 1205 (1495)
T PLN03232 1129 NTSSNRWLTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVER 1205 (1495)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111111111 111122222333444432 3221 1222223345555666777888888899999999999
Q ss_pred HHHHhccCCCCccC-CCCccc--cCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 231 IFQVIQRKPRISYS-SKGKEL--EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 231 i~~~l~~~~~~~~~-~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
+.++++.+++.... ....++ .+..+.|+|+||+|+|+++ .+++|+|+||+|++||++|||||||||||||+++|+|
T Consensus 1206 i~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232 1206 VGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred HHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999866543211 111111 1234679999999999643 3579999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc
Q 048639 308 FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387 (1139)
Q Consensus 308 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 387 (1139)
+++|++|+|.+||+|+++++++++|++|+||||||.||+|||||||.+++ ++++++++++++.++++++++++|+|+||
T Consensus 1285 l~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt 1363 (1495)
T PLN03232 1285 IVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDA 1363 (1495)
T ss_pred CCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCc
Confidence 99999999999999999999999999999999999999999999999986 68899999999999999999999999999
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEe
Q 048639 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 388 ~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||+|+||+
T Consensus 1364 ~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~ 1443 (1495)
T PLN03232 1364 EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLS 1443 (1495)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CcEEEEecChhhhhccc-hHHHHHHhhcc
Q 048639 468 DGQVTETGTHHSLLQTS-DFYNRLFTMQN 495 (1139)
Q Consensus 468 ~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 495 (1139)
+|+|+|.|+|+||++++ +.|++++..+.
T Consensus 1444 ~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1444 SGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred CCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999876 58999987543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=716.40 Aligned_cols=214 Identities=27% Similarity=0.447 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCcccCCCChHHH
Q 048639 885 RIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD---PNEGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~l 960 (1139)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|.+||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 3469999999999999999999999999999999999997 68899999999985 257
Q ss_pred hhhceEEccccc-cccccHHHHhccCC----C-cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 961 RSQIGLVQQEPL-LFSCSIRNNICYGN----E-AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 961 R~~i~~V~Qdp~-LF~gTIreNL~~~~----~-~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|++++||||++. ++..|+||||.++. | ..++ +.+.++++..++.+ ..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999875 55689999998641 1 2233 34667788777754 368889988889999999
Q ss_pred HHHHHHHHhcCCCC-EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh--hcCCEEEEEeC
Q 048639 1031 QRIAIARTLLKRPA-IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV--INSDVIVVMDK 1107 (1139)
Q Consensus 1031 QrlalARALlr~p~-ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti--~~~DrI~vl~~ 1107 (1139)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++.. ++++|||+++|+++.. ..||+|++|++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la---------~~g~tvI~t~H~~~~~~~~~~D~vl~L~~ 978 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA---------DHGQAILCTIHQPSAILFEEFDRLLLLQK 978 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH---------HcCCEEEEEecCCCHHHHHhcCEEEEEcC
Confidence 99999999999997 999999999999999999999999874 3345699999999974 46999999999
Q ss_pred C-EEEEecChhH
Q 048639 1108 G-EVVEMGSHST 1118 (1139)
Q Consensus 1108 G-~ive~G~~~e 1118 (1139)
| +++++|++.+
T Consensus 979 GG~iv~~G~~~~ 990 (1394)
T TIGR00956 979 GGQTVYFGDLGE 990 (1394)
T ss_pred CCEEEEECCccc
Confidence 7 9999999743
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-71 Score=665.81 Aligned_cols=454 Identities=24% Similarity=0.308 Sum_probs=347.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999963 3599999999999999999999999999999999999999999999999888766666677789
Q ss_pred EEEecCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 336 GAVSQEPSL--F-------TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 336 ~~v~Q~~~l--~-------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
+|++|++.+ + ..|+++|+.++. ...+++ .+.++.+ |++........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARC---------EQLAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHH---------HHHHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 2 358888876531 011122 2334444 44444566778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999998864 47899999999999876 9999999999999888766542110
Q ss_pred hHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHH
Q 048639 485 DFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELL 564 (1139)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (1139)
. ...+.. .
T Consensus 227 ~-~~~~~~-------------------------------------------------------------------~---- 234 (490)
T PRK10938 227 L-VAQLAH-------------------------------------------------------------------S---- 234 (490)
T ss_pred h-hhhhhh-------------------------------------------------------------------h----
Confidence 0 000000 0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 565 RLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLY 644 (1139)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 644 (1139)
T Consensus 235 -------------------------------------------------------------------------------- 234 (490)
T PRK10938 235 -------------------------------------------------------------------------------- 234 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 048639 645 TGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGL 724 (1139)
Q Consensus 645 ~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~ 724 (1139)
+ .+ ... ..+
T Consensus 235 ~-----~~--~~~-~~~--------------------------------------------------------------- 243 (490)
T PRK10938 235 E-----QL--EGV-QLP--------------------------------------------------------------- 243 (490)
T ss_pred h-----cc--Ccc-ccC---------------------------------------------------------------
Confidence 0 00 000 000
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 725 IQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAH 804 (1139)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1139)
T Consensus 244 -------------------------------------------------------------------------------- 243 (490)
T PRK10938 244 -------------------------------------------------------------------------------- 243 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccc
Q 048639 805 AVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKG 884 (1139)
Q Consensus 805 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 884 (1139)
...+..... ... ....
T Consensus 244 ------------------------------------------------------------~~~~~~~~~--~~~--~~~~ 259 (490)
T PRK10938 244 ------------------------------------------------------------EPDEPSARH--ALP--ANEP 259 (490)
T ss_pred ------------------------------------------------------------ccccccccc--ccC--CCCc
Confidence 000000000 000 0112
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccCC-CChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIKE-YNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~-~~l~~lR~ 962 (1139)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999963 3599999999999999999999999999999999998875 69999999987632 23345788
Q ss_pred hceEEcccccccc---ccHHHHhccCC-------CcC---CHHHHHHHHHHcCchH-HHhhCCCCccccccCCCCCCChH
Q 048639 963 QIGLVQQEPLLFS---CSIRNNICYGN-------EAA---SEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~---gTIreNL~~~~-------~~~---sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
+++|+||++.++. .|+++++.++. ... .++++.++++..++.+ .. +.+ ...||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~~LSgG 405 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-------DAP----FHSLSWG 405 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-------cCc----hhhCCHH
Confidence 9999999987642 46777764321 001 1245677788887754 32 222 3479999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEEe
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVMD 1106 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl~ 1106 (1139)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++... .+++|||+|||+++.+.. ||+|++|+
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~--------~~~~tviivsHd~~~~~~~~~d~v~~l~ 477 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLIS--------EGETQLLFVSHHAEDAPACITHRLEFVP 477 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh--------cCCcEEEEEecchhhhhhhhheeEEEec
Confidence 99999999999999999999999999999999999999998641 234569999999999974 79999999
Q ss_pred CCEEEEec
Q 048639 1107 KGEVVEMG 1114 (1139)
Q Consensus 1107 ~G~ive~G 1114 (1139)
+|+|++.-
T Consensus 478 ~G~i~~~~ 485 (490)
T PRK10938 478 DGDIYRYV 485 (490)
T ss_pred CCceEEee
Confidence 99998753
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-69 Score=591.35 Aligned_cols=527 Identities=20% Similarity=0.286 Sum_probs=445.3
Q ss_pred HhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Q 048639 576 SGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWF 655 (1139)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff 655 (1139)
..+.....+.++-++-+.........++.....+.+.+.++..++.+++..+..+.+.+...+++.++|...+++|..--
T Consensus 35 INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~ 114 (580)
T COG4618 35 INLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR 114 (580)
T ss_pred HHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc
Confidence 33344444455555555544433333333444445556667778889999999999999999999999999987665522
Q ss_pred ccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 048639 656 EKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSG 735 (1139)
Q Consensus 656 ~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~ 735 (1139)
..|+=. .--+|.++++.++...-...+...-.+-+.++++|.+++++.++.++...+++.+.++.....++-.+
T Consensus 115 -----~~g~~~-Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~ 188 (580)
T COG4618 115 -----GSGDGL-QPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK 188 (580)
T ss_pred -----CCCccc-cchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 222211 23478899998887643333333333445566677788888888888777777777877777777667
Q ss_pred hHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 736 DSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLI 815 (1139)
Q Consensus 736 ~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 815 (1139)
+..+.......+...+.++.++|++.|+.....++|.+....+...+.+..-..+.+.+++-.+-.+.+..++.+|++++
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 77777778889999999999999999999999999998888887777777777777888888888899999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEEC
Q 048639 816 DKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNY 895 (1139)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y 895 (1139)
..|++|+|.+++...+......|+..++..|.++..+..+..|+.+.+...|+..+. .+.|..+|.+.++++++.-
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m~LP~P~g~L~Ve~l~~~P 344 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER----MPLPAPQGALSVERLTAAP 344 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CCCCCCCceeeEeeeeecC
Confidence 999999999999999999999999999999999999999999999999876654322 2334567899999999977
Q ss_pred CCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccccccc
Q 048639 896 PSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS 975 (1139)
Q Consensus 896 ~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~ 975 (1139)
|.. ++|+|+|+||.++|||-+||+||||||||||.++|.|.+.|.+|.|.+||-|+++++.+++=++|||.|||..||+
T Consensus 345 Pg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 345 PGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred CCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 654 5689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCC
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~L 1055 (1139)
|||+|||.-+.++.+++.|.+|++.++.||.|.++|+||||+|||+|..|||||||||+|||||+.+|++++||||-|||
T Consensus 424 GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNL 503 (580)
T COG4618 424 GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503 (580)
T ss_pred CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCc
Confidence 99999999887789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1056 D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
|.+-|+.+.++|.+.+ +++.|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 504 D~~GE~AL~~Ai~~~k---------~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 504 DSEGEAALAAAILAAK---------ARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred chhHHHHHHHHHHHHH---------HcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999876 444559999999999999999999999999999999999875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-69 Score=654.73 Aligned_cols=480 Identities=21% Similarity=0.363 Sum_probs=345.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 3699
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDA----------------DDE---QIYNA----------SMMANAHSFISQLPDQYS 386 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 386 (1139)
|++|++.++.. |++||+.++.... ..+ .+.+. .....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0112234455555 443
Q ss_pred ccc-cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEE
Q 048639 387 TEL-GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIA 464 (1139)
Q Consensus 387 t~i-~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~ 464 (1139)
... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|||+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345789999999999999999999999999999999999999999999864 47899999999999876 99999
Q ss_pred EEeCcEEE-EecChhhhhccchHH-HHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhh
Q 048639 465 VVEDGQVT-ETGTHHSLLQTSDFY-NRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEE 542 (1139)
Q Consensus 465 ~l~~G~i~-~~g~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (1139)
+|++|+++ +.|+++++++..... ..... +
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~-----------------------------------------------~-- 254 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLA-----------------------------------------------D-- 254 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHH-----------------------------------------------H--
Confidence 99999994 788887764311000 00000 0
Q ss_pred hcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 048639 543 VKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHT 622 (1139)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1139)
. ... .....
T Consensus 255 ~------------~~~-~~~~~---------------------------------------------------------- 263 (530)
T PRK15064 255 N------------AKK-KAQIA---------------------------------------------------------- 263 (530)
T ss_pred H------------HHH-HHHHH----------------------------------------------------------
Confidence 0 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 623 LQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSL 702 (1139)
Q Consensus 623 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 702 (1139)
+++. ...
T Consensus 264 ---------------~~~~-~~~--------------------------------------------------------- 270 (530)
T PRK15064 264 ---------------ELQS-FVS--------------------------------------------------------- 270 (530)
T ss_pred ---------------HHHH-HHH---------------------------------------------------------
Confidence 0000 000
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 048639 703 VVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSS 782 (1139)
Q Consensus 703 ~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 782 (1139)
+ . .... .+. .....
T Consensus 271 -------------------------~-----------~---------------------~~~~---~~~----~~~~~-- 284 (530)
T PRK15064 271 -------------------------R-----------F---------------------SANA---SKA----KQATS-- 284 (530)
T ss_pred -------------------------H-----------h---------------------hccc---hhh----HHHHH--
Confidence 0 0 0000 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 783 RKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEI 862 (1139)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ 862 (1139)
...++.+.
T Consensus 285 ------------------------------------------------------------------------~~~~~~~~ 292 (530)
T PRK15064 285 ------------------------------------------------------------------------RAKQIDKI 292 (530)
T ss_pred ------------------------------------------------------------------------HHHHHhhc
Confidence 00000000
Q ss_pred h--ccCCCCCCCCC-C-CCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 863 L--DRKTEIEPDAP-E-SSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 863 ~--~~~~~~~~~~~-~-~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
. ..++....... . .......+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 293 KLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred cccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 0 00000000000 0 0000001235999999999963 35999999999999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccc--cc-cccHHHHhccCC-CcCCHHHHHHHHHHcCch-HHHhhCCCC
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL--LF-SCSIRNNICYGN-EAASEAEIVEVSKKANIH-DFISSLPDG 1013 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~--LF-~gTIreNL~~~~-~~~sd~ei~~al~~~~l~-~~i~~lp~g 1013 (1139)
+|++|+|.++|. ++++|+||++. ++ ..|+++|+.... +...++++.++++..++. +...
T Consensus 370 ~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----- 433 (530)
T PRK15064 370 EPDSGTVKWSEN-----------ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK----- 433 (530)
T ss_pred CCCCeEEEECCc-----------eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----
Confidence 999999999872 57999999984 44 369999986432 223456788888888873 3322
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1014 ldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
. ....||||||||++||||++++|+||||||||++||+.+...+.+.|++. ++ |||+|||++
T Consensus 434 --~----~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----------~~-tvi~vsHd~ 495 (530)
T PRK15064 434 --K----SVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----------EG-TLIFVSHDR 495 (530)
T ss_pred --C----cccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----------CC-EEEEEeCCH
Confidence 2 23579999999999999999999999999999999999999999999863 23 599999999
Q ss_pred hhhhc-CCEEEEEeCCEEE-EecChhHHhhc
Q 048639 1094 ATVIN-SDVIVVMDKGEVV-EMGSHSTLVAE 1122 (1139)
Q Consensus 1094 ~ti~~-~DrI~vl~~G~iv-e~G~~~eLl~~ 1122 (1139)
+.+.. ||||++|++|+++ ..|+++++++.
T Consensus 496 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 496 EFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99886 9999999999998 78999998864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=644.13 Aligned_cols=484 Identities=23% Similarity=0.315 Sum_probs=339.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHHhC
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA----------------DD----------EQIYNASM-------MANAHSFISQL 381 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~l 381 (1139)
|||+|+|.+++. |++||+.++.... .. .++.+.+. ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 9999998753100 00 00111111 11223344444
Q ss_pred CCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-c
Q 048639 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-A 460 (1139)
Q Consensus 382 ~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~ 460 (1139)
|++ .......+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 332 2466778999999999999999999999999999999999999999999998763 599999999999976 9
Q ss_pred CEEEEEeCcEEE-EecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccc
Q 048639 461 DMIAVVEDGQVT-ETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTG 539 (1139)
Q Consensus 461 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1139)
|+|++|++|+++ ..|+++++.+....-.... ..
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~---------------------------~~------------------- 261 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLAQE---------------------------EK------------------- 261 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHHHH---------------------------HH-------------------
Confidence 999999999986 6787776543110000000 00
Q ss_pred hhhhcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHH
Q 048639 540 QEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLF 619 (1139)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1139)
. . ..
T Consensus 262 ---~-------~----~~-------------------------------------------------------------- 265 (556)
T PRK11819 262 ---Q-------E----AA-------------------------------------------------------------- 265 (556)
T ss_pred ---H-------H----HH--------------------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 620 THTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATI 699 (1139)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 699 (1139)
.+..+ .+.. .|.+ ..+.+
T Consensus 266 -------------------~~~~~-~~~~----~~~~--~~~~~------------------------------------ 283 (556)
T PRK11819 266 -------------------RQKAL-KREL----EWVR--QSPKA------------------------------------ 283 (556)
T ss_pred -------------------HHHHH-HHHH----HHHH--Hhhhh------------------------------------
Confidence 00000 0000 0000 00000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHH
Q 048639 700 VSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTK 779 (1139)
Q Consensus 700 ~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~ 779 (1139)
+ .. ...
T Consensus 284 -----------------------------------------------------------~----~~-----------~~~ 289 (556)
T PRK11819 284 -----------------------------------------------------------R----QA-----------KSK 289 (556)
T ss_pred -----------------------------------------------------------h----HH-----------HHH
Confidence 0 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 780 RSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPA 859 (1139)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 859 (1139)
+ .....++.
T Consensus 290 ~-----------------------------------------------------------------------~~~~~~~~ 298 (556)
T PRK11819 290 A-----------------------------------------------------------------------RLARYEEL 298 (556)
T ss_pred H-----------------------------------------------------------------------HHHHHHHh
Confidence 0 00000000
Q ss_pred HHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 860 FEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+.....+...........+...+..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 375 (556)
T PRK11819 299 LSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred hcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 00000000000000000000011235999999999963 359999999999999999999999999999999999999
Q ss_pred CCccEEEECCcccCCCChHHHhhhceEEcccc-cccc-ccHHHHhccCCC----cCCHHHHHHHHHHcCchHHHhhCCCC
Q 048639 940 PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFS-CSIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPDG 1013 (1139)
Q Consensus 940 p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp-~LF~-gTIreNL~~~~~----~~sd~ei~~al~~~~l~~~i~~lp~g 1013 (1139)
|++|+|.+++ ++ +++|+||++ .++. .|+++|+.++.. ...+.+..++++..++.+. .
T Consensus 376 p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~ 438 (556)
T PRK11819 376 PDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------D 438 (556)
T ss_pred CCCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------H
Confidence 9999999954 21 599999997 5554 599999986431 1123345566777766321 1
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1014 ldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
.+.. ...||||||||++||||++.+|++|||||||++||+.+...+.+.|++. .+ |+|+|||++
T Consensus 439 ~~~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----------~~-tvi~vtHd~ 502 (556)
T PRK11819 439 QQKK----VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-----------PG-CAVVISHDR 502 (556)
T ss_pred hcCc----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----------CC-eEEEEECCH
Confidence 1222 3469999999999999999999999999999999999999999999864 23 499999999
Q ss_pred hhhhc-CCEEEEEeC-CEEEE-ecChhHHhhc
Q 048639 1094 ATVIN-SDVIVVMDK-GEVVE-MGSHSTLVAE 1122 (1139)
Q Consensus 1094 ~ti~~-~DrI~vl~~-G~ive-~G~~~eLl~~ 1122 (1139)
+.+.. ||+|++|++ |++.+ .|++++++++
T Consensus 503 ~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 503 WFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99876 999999996 88874 6888888754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-67 Score=693.00 Aligned_cols=467 Identities=20% Similarity=0.303 Sum_probs=385.4
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
++.|++||+++ ++|+++||+++|++.+++.+...+..++..++.+++.++++++++|.+++++++++++++++..++.+
T Consensus 969 l~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~ 1047 (1490)
T TIGR01271 969 LQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLR 1047 (1490)
T ss_pred HcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999997 89999999999999999999999999999999999999988999887765544444444555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWA--L 178 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 178 (1139)
..++..+......+.+.+++.|+++|+.+||+|++++.+.+++.+..+...+..........+......++..+..+ +
T Consensus 1048 ~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~ 1127 (1490)
T TIGR01271 1048 TSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVT 1127 (1490)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888999999999999999999999999999999888765443332222222222222222111111 1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCC-----------
Q 048639 179 IIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKG----------- 247 (1139)
Q Consensus 179 ~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~----------- 247 (1139)
+++++. ...+.|.+..++.+...+..++..+...+..+.....+.+|+.++++.+++.......
T Consensus 1128 ~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~ 1202 (1490)
T TIGR01271 1128 FIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLV 1202 (1490)
T ss_pred HHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 112222 2234455444455555566677777777888899999999999999765443211000
Q ss_pred ----ccc--cCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 248 ----KEL--EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 248 ----~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
..+ .+..+.|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|+|+++ ++|+|.+||+
T Consensus 1203 ~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~ 1280 (1490)
T TIGR01271 1203 IENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGV 1280 (1490)
T ss_pred cccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCE
Confidence 000 1234689999999999753 4679999999999999999999999999999999999997 7999999999
Q ss_pred cCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 322 NIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 322 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
|+.+++.+.+|++|+||||+|.||+|||||||.... ..++++++++++.+++++++.++|+|+||.+||+|.+||||||
T Consensus 1281 di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1281 SWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred EcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 999999999999999999999999999999998654 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|++|+
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhccC
Q 048639 482 QTSDFYNRLFTMQNL 496 (1139)
Q Consensus 482 ~~~~~~~~~~~~~~~ 496 (1139)
+.++.|+++++....
T Consensus 1440 ~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1440 NETSLFKQAMSAADR 1454 (1490)
T ss_pred cCCcHHHHHHHHhCh
Confidence 888999999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-67 Score=638.12 Aligned_cols=483 Identities=23% Similarity=0.327 Sum_probs=338.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhc-------HHHHHHhC
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD-----------------ADD---------EQIYNASMMAN-------AHSFISQL 381 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~-----------------~~~---------~~~~~~~~~~~-------~~~~i~~l 381 (1139)
+||+|+|++++. |++||+.++... ... .++.+++...+ +.+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998864 999999875310 000 11222221111 22334444
Q ss_pred CCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-c
Q 048639 382 PDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-A 460 (1139)
Q Consensus 382 ~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~ 460 (1139)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 235677899999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CEEEEEeCcEEE-EecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccc
Q 048639 461 DMIAVVEDGQVT-ETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTG 539 (1139)
Q Consensus 461 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (1139)
|++++|++|+++ ..|+++++.+.... ... .. ..
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~~---~~~---------------------------~~---------~~------- 259 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKEK---RLE---------------------------QE---------EK------- 259 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHHH---HHH---------------------------HH---------HH-------
Confidence 999999999976 67887766431000 000 00 00
Q ss_pred hhhhcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHH
Q 048639 540 QEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLF 619 (1139)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (1139)
+ . ..
T Consensus 260 ~----------~----~~-------------------------------------------------------------- 263 (552)
T TIGR03719 260 E----------E----SA-------------------------------------------------------------- 263 (552)
T ss_pred H----------H----HH--------------------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 620 THTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATI 699 (1139)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~ 699 (1139)
....+. +....+ . ..+.+
T Consensus 264 ---------------~~~~~~-~~~~~~--------~--~~~~~------------------------------------ 281 (552)
T TIGR03719 264 ---------------RQKALK-RELEWV--------R--SSPKA------------------------------------ 281 (552)
T ss_pred ---------------HHHHHH-HHHHHH--------H--hhhhh------------------------------------
Confidence 000000 000000 0 00000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHH
Q 048639 700 VSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTK 779 (1139)
Q Consensus 700 ~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~ 779 (1139)
. +. ..
T Consensus 282 ----------------------------------~-----------------------------~~-----------~~- 286 (552)
T TIGR03719 282 ----------------------------------R-----------------------------QA-----------KS- 286 (552)
T ss_pred ----------------------------------H-----------------------------HH-----------HH-
Confidence 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 780 RSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPA 859 (1139)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri 859 (1139)
+. .....++.
T Consensus 287 ~~----------------------------------------------------------------------~~~~~~~~ 296 (552)
T TIGR03719 287 KA----------------------------------------------------------------------RLARYEEL 296 (552)
T ss_pred HH----------------------------------------------------------------------HHHHHHhh
Confidence 00 00000000
Q ss_pred HHH-hccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 860 FEI-LDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 860 ~~~-~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+. ....++....... ..+...+..|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+.
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 372 (552)
T TIGR03719 297 LSQEFQKRNETAEIYIP-PGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE 372 (552)
T ss_pred hhhcccccCCCceeecC-CCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 000 0000000000000 000001235999999999963 35999999999999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccc-cc-cccHHHHhccCCCc--C--CHHHHHHHHHHcCchHHHhhCCC
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL-LF-SCSIRNNICYGNEA--A--SEAEIVEVSKKANIHDFISSLPD 1012 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~-LF-~gTIreNL~~~~~~--~--sd~ei~~al~~~~l~~~i~~lp~ 1012 (1139)
+|++|+|.+++ ++ +++|+||++. ++ ..|+++|+.++... . .+.+..++++..++.+..
T Consensus 373 ~p~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----- 436 (552)
T TIGR03719 373 QPDSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----- 436 (552)
T ss_pred CCCCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH-----
Confidence 99999999954 21 5999999973 55 45999999875321 1 133455666666663211
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecC
Q 048639 1013 GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092 (1139)
Q Consensus 1013 gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHr 1092 (1139)
.+. ....||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. + |||+|||+
T Consensus 437 -~~~----~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-----------~-~viivsHd 499 (552)
T TIGR03719 437 -QQK----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA-----------G-CAVVISHD 499 (552)
T ss_pred -hcC----chhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-----------C-eEEEEeCC
Confidence 122 235799999999999999999999999999999999999999999998642 3 49999999
Q ss_pred chhhhc-CCEEEEEeC-CEEEE-ecChhHHhhc
Q 048639 1093 LATVIN-SDVIVVMDK-GEVVE-MGSHSTLVAE 1122 (1139)
Q Consensus 1093 l~ti~~-~DrI~vl~~-G~ive-~G~~~eLl~~ 1122 (1139)
++.+.. ||+|++|++ |++++ .|+++++.+.
T Consensus 500 ~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 500 RWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred HHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 999886 999999997 68874 4788777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-67 Score=654.20 Aligned_cols=465 Identities=22% Similarity=0.334 Sum_probs=397.1
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+|.|++|||++ ++|+|+||+++|++.+++.++..+..++..++.+++.++++.+..|.+.++++.+.+++..+..++.+
T Consensus 902 lrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~ 980 (1381)
T KOG0054|consen 902 LRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLA 980 (1381)
T ss_pred HhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 89999999999999999999999999999999999999999999998888887777778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
..+...+-....++...+++.|+++|+.|||+|+.|++|.+++....+...+...-.....-+...-+.++..+...
T Consensus 981 tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~--- 1057 (1381)
T KOG0054|consen 981 TSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVL--- 1057 (1381)
T ss_pred HhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 88888888888899999999999999999999999999999998887776554433222111111122222222221
Q ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---cCCCCccccCCCc
Q 048639 181 WVGAVVVTA--KRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRIS---YSSKGKELEKIDG 255 (1139)
Q Consensus 181 ~~g~~~v~~--~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~---~~~~~~~~~~~~~ 255 (1139)
..+...+.. +..++|.+=-.+.|.+.+...+..+......+..-..|.+|+.++.+.+++.+ ....+++..+.+|
T Consensus 1058 ~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G 1137 (1381)
T KOG0054|consen 1058 IAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKG 1137 (1381)
T ss_pred HHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCC
Confidence 122222222 22667777666778887777777777888888889999999999998655521 1111222234578
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+|+|++.+|..+ .++|||||||+|+|||++||||++|||||||+++|.|+.+|.+|+|.|||.|+.++.++++|+++
T Consensus 1138 ~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 99999999999754 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+.+||||.||+||+|.|+.... +.+|+++|+|++.+++++.++++|+|+|+.+.|+|.|+|-||||.+||||||+++++
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred eeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 9999999999999999998543 678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHH
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLF 491 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~ 491 (1139)
||+|||+||++|++|...|++.|++..++||||.|+||++++.+||||+|||+|+|+|.|+|.+|+++ ++.|+.+.
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999976 55665443
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=622.11 Aligned_cols=474 Identities=19% Similarity=0.203 Sum_probs=371.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 617 SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILI 696 (1139)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~ 696 (1139)
..++.++..++....+.+...++|.++++++++.|++||+ ++++|++++|+++|++.+...+. .+..++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999999999999 68899999999999999998765 46777888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcch---HHHHHHHHH
Q 048639 697 ATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE---ENILQKAKI 773 (1139)
Q Consensus 697 ~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~---~~~~~~~~~ 773 (1139)
++++++.++|.+++++++.+|+.+++.++..+..++..++.++...+..+.+.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 889999999999999999999888777777776666667777788889999999999999995 4443 356677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 774 SLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAI 853 (1139)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (1139)
..++..+...+..........+......+...+.++++... +..+.+.......+......++..+...+..+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666554444333222222222112212222222222221 112222322222333334578888999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHH
Q 048639 854 TVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLAL 933 (1139)
Q Consensus 854 ~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~l 933 (1139)
.+.+|+.++.+.+++.+... ..+ .+..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~~--~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFPR--PQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHhcccccccccc--ccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999875433221111 111 1113579999999999742 469999999999999999999999999999999
Q ss_pred HhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCC
Q 048639 934 LLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDG 1013 (1139)
Q Consensus 934 L~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~g 1013 (1139)
|+|+|+|++|+|.+||+|+++++.+.+|++++||||||++|++|+++| + +..++++++++++++++.+++.. |+|
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-ccc
Confidence 999999999999999999999999999999999999999999999999 2 45788899999999998877653 444
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1014 YDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1014 ldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+... ..++|+|+||||+
T Consensus 444 ~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~--------~~~~tvi~itH~~ 510 (547)
T PRK10522 444 R-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ--------EMGKTIFAISHDD 510 (547)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEEech
Confidence 2 14789999999999999999999999999999999999999999999875430 1234599999999
Q ss_pred hhhhcCCEEEEEeCCEEEEe-cChhHHh
Q 048639 1094 ATVINSDVIVVMDKGEVVEM-GSHSTLV 1120 (1139)
Q Consensus 1094 ~ti~~~DrI~vl~~G~ive~-G~~~eLl 1120 (1139)
+++..||+|++|++|+++|. |++.+-.
T Consensus 511 ~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 511 HYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred HHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 99999999999999999987 5555544
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=627.54 Aligned_cols=456 Identities=18% Similarity=0.179 Sum_probs=383.2
Q ss_pred HHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048639 6 LILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVIC 76 (1139)
Q Consensus 6 ~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 76 (1139)
..+++...++++..+ +++|++||++. ++|++++|+++|++.+++++.. +..++..++++++.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 150 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYL 150 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554 88999999987 8999999999999999998864 777788888888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccH--HHHHHHHHHHHHHHHHH
Q 048639 77 CWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGER--SEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 77 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~ 154 (1139)
+|.+++++++.+|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++ .+.+++.+..++..+..
T Consensus 151 ~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
T TIGR01194 151 SVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999888888888888888888888888889999999999999999999999999954 55778888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQV 234 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 234 (1139)
.+..........+..++..+...+.+++|++. +.+++|.+++++.+......|+..+...+..++++.++++|+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~l 307 (555)
T TIGR01194 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADF 307 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555544444444444434344444555443 789999999999999999999999999999999999999999999
Q ss_pred hccCCC--Cc-c-CCCCc----cccCCCccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHH
Q 048639 235 IQRKPR--IS-Y-SSKGK----ELEKIDGNIDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL 304 (1139)
Q Consensus 235 l~~~~~--~~-~-~~~~~----~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~ 304 (1139)
++.+++ .. . ..... .+....+.|+++||+|+|++.+ .+++|+|+||++++||+++|+||||||||||+++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~l 387 (555)
T TIGR01194 308 GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKL 387 (555)
T ss_pred HhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHH
Confidence 853211 10 0 00000 1112235799999999997532 2369999999999999999999999999999999
Q ss_pred HHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 048639 305 VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQ 384 (1139)
Q Consensus 305 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g 384 (1139)
|+|+++|++|+|.+||.++++++.+++|++++||+|+|++|++|+++|+ .++.+++++.++++.+++++++..+|+|
T Consensus 388 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g 464 (555)
T TIGR01194 388 FCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGG 464 (555)
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccc
Confidence 9999999999999999999999999999999999999999999999995 4567889999999999999999999999
Q ss_pred CCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHH-HH-cCCCeEEEEecCccchhccCE
Q 048639 385 YSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALE-RA-MQGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 385 ~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~itH~~~~~~~~d~ 462 (1139)
++|. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||++.+..||+
T Consensus 465 ~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~ 539 (555)
T TIGR01194 465 FSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQ 539 (555)
T ss_pred cCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 9984 7899999999999999999999999999999999999999988764 33 468999999999999989999
Q ss_pred EEEEeCcEEEEe
Q 048639 463 IAVVEDGQVTET 474 (1139)
Q Consensus 463 i~~l~~G~i~~~ 474 (1139)
|++|++|++++.
T Consensus 540 i~~l~~G~i~~~ 551 (555)
T TIGR01194 540 IIKLAAGCIVKD 551 (555)
T ss_pred EEEEECCEEEEe
Confidence 999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-66 Score=632.75 Aligned_cols=480 Identities=22% Similarity=0.317 Sum_probs=333.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 459999999999999999999999999999999999999999999998842 489
Q ss_pred EEecCCCCCcccHHHHHhcCCCCC--------------CHHHH---HHH-------HHHhcHHHHHHhCCCCCC-ccccc
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDA--------------DDEQI---YNA-------SMMANAHSFISQLPDQYS-TELGQ 391 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~--------------~~~~~---~~~-------~~~~~~~~~i~~l~~g~~-t~i~~ 391 (1139)
|++|++..+..|+.+.+.-+.... ....+ ... .....+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556666554211000 00000 000 0011233455555 443 24566
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 392 RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
...+||||||||++|||||+.+|++|||||||++||+.+..++.+.|++. +.|+|+|||+++++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 77899999999999999999999999999999999999999999999775 5799999999999976 99999999999
Q ss_pred EE-EecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccc
Q 048639 471 VT-ETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTT 549 (1139)
Q Consensus 471 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (1139)
+. ..|+++......... .. . + .
T Consensus 224 i~~~~g~~~~~~~~~~~~---~~---------------------------~-------------------~--~------ 246 (638)
T PRK10636 224 LFEYTGNYSSFEVQRATR---LA---------------------------Q-------------------Q--Q------ 246 (638)
T ss_pred EEEecCCHHHHHHHHHHH---HH---------------------------H-------------------H--H------
Confidence 96 467666543210000 00 0 0 0
Q ss_pred hhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFG 629 (1139)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1139)
..+.+
T Consensus 247 ------~~~~~--------------------------------------------------------------------- 251 (638)
T PRK10636 247 ------AMYES--------------------------------------------------------------------- 251 (638)
T ss_pred ------HHHHH---------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048639 630 VVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMA 709 (1139)
Q Consensus 630 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 709 (1139)
....+ .+
T Consensus 252 -----~~~~~-----~~--------------------------------------------------------------- 258 (638)
T PRK10636 252 -----QQERV-----AH--------------------------------------------------------------- 258 (638)
T ss_pred -----HHHHH-----HH---------------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 710 LVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789 (1139)
Q Consensus 710 lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1139)
+..+.+++...-....+.
T Consensus 259 ------------------------------------------------------~~~~i~r~~~~a~~~~~a-------- 276 (638)
T PRK10636 259 ------------------------------------------------------LQSYIDRFRAKATKAKQA-------- 276 (638)
T ss_pred ------------------------------------------------------HHHHHHHhhhhhhhHHHH--------
Confidence 000000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 048639 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEI 869 (1139)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 869 (1139)
.......+++.. .. ++..
T Consensus 277 ------------------------------------------------------------~~r~~~l~~~~~-~~-~~~~ 294 (638)
T PRK10636 277 ------------------------------------------------------------QSRIKMLERMEL-IA-PAHV 294 (638)
T ss_pred ------------------------------------------------------------HHHHHHHHHhhc-cc-cccc
Confidence 000000011000 00 0000
Q ss_pred CCCCCCC-CCCC-CccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 048639 870 EPDAPES-SESG-RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947 (1139)
Q Consensus 870 ~~~~~~~-~~~~-~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i 947 (1139)
.....-. +.+. ..+..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~ 371 (638)
T PRK10636 295 DNPFHFSFRAPESLPNPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 (638)
T ss_pred CCceeEecCCCccCCCceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 0000000 0000 01225999999999953 46999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHhhhceEEcccc--ccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchH-HHhhCCCCccccccCCCC
Q 048639 948 DGKGIKEYNLRRLRSQIGLVQQEP--LLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGC 1023 (1139)
Q Consensus 948 dG~di~~~~l~~lR~~i~~V~Qdp--~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~ 1023 (1139)
++. .+++|+||++ .++ ..|+.+++....+...++++.+.++..++.+ .. +.++ .
T Consensus 372 ~~~-----------~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~ 429 (638)
T PRK10636 372 AKG-----------IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEET----R 429 (638)
T ss_pred CCC-----------EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCch----h
Confidence 741 2699999985 343 3478888742223334567788888887742 22 2233 4
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEE
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVI 1102 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI 1102 (1139)
.||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++ |||+|||+++.+.. ||+|
T Consensus 430 ~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----------~g-tvi~vSHd~~~~~~~~d~i 497 (638)
T PRK10636 430 RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-----------EG-ALVVVSHDRHLLRSTTDDL 497 (638)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----------CC-eEEEEeCCHHHHHHhCCEE
Confidence 69999999999999999999999999999999999999999999864 23 59999999999976 9999
Q ss_pred EEEeCCEEE-EecChhHHh
Q 048639 1103 VVMDKGEVV-EMGSHSTLV 1120 (1139)
Q Consensus 1103 ~vl~~G~iv-e~G~~~eLl 1120 (1139)
++|++|+++ ..|++++..
T Consensus 498 ~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 498 YLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred EEEECCEEEEcCCCHHHHH
Confidence 999999998 678998874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-65 Score=663.01 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCC----------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCccc
Q 048639 885 RIEFQNIKFNYPSR----------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGI 952 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di 952 (1139)
.+.|+||++.++.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999998532 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHHHhhhceEEcccccccc-ccHHHHhccCC----C-cCCHH----HHHHHHHHcCchHHHhhCCCCccccccCCC
Q 048639 953 KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGN----E-AASEA----EIVEVSKKANIHDFISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 953 ~~~~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~----~-~~sd~----ei~~al~~~~l~~~i~~lp~gldt~v~e~G 1022 (1139)
+. ..+|+.+|||+|++.++. .|++|||.+.. | ..+++ .+.++++..+|.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 53 457788999999987775 69999997631 1 22322 36778888888654 356666443
Q ss_pred -CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh-h-hcC
Q 048639 1023 -CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT-V-INS 1099 (1139)
Q Consensus 1023 -~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t-i-~~~ 1099 (1139)
..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. ..++|||+++|+++. + ..|
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~---------~~g~tVI~t~Hq~~~~i~~~~ 1087 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV---------DTGRTVVCTIHQPSIDIFEAF 1087 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCCCHHHHHhC
Confidence 5799999999999999999999999999999999999999999999875 334569999999984 4 459
Q ss_pred CEEEEEeC-CEEEEecChh
Q 048639 1100 DVIVVMDK-GEVVEMGSHS 1117 (1139)
Q Consensus 1100 DrI~vl~~-G~ive~G~~~ 1117 (1139)
|++++|++ |+++.+|++.
T Consensus 1088 D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1088 DELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred CEEEEEcCCCEEEEECCcc
Confidence 99999996 8999999864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-66 Score=568.15 Aligned_cols=443 Identities=24% Similarity=0.368 Sum_probs=394.3
Q ss_pred chhHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 34 TGKVITGVSSHMSVIRDAIGEK-LGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLY 112 (1139)
Q Consensus 34 ~G~l~~~~~~D~~~i~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1139)
.|+=..-+ +|.++++.|++.. +..++...|+.+. +.++|.+.+++.++.++...+++.+.++-.+..++-.++..+.
T Consensus 116 ~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~y-l~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~ 193 (580)
T COG4618 116 SGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLY-LAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEA 193 (580)
T ss_pred CCccccch-hhHHHHHHHHcCCCcchhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44433333 6999999999874 5556666776664 5667777887888777777777666666666777777788888
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048639 113 LSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRS 192 (1139)
Q Consensus 113 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l 192 (1139)
..+.+....-+.++.++|++.|+.+...++|.+.+..+.....+.+-..+....+.-.+-.+....++.+|+|++++|++
T Consensus 194 ~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~ 273 (580)
T COG4618 194 SIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEI 273 (580)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcC
Confidence 89999999999999999999999999999999999999988888877777777777777777888889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCC
Q 048639 193 TGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQ 272 (1139)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~ 272 (1139)
|+|.+++....+.....|+......+..|..++.|++|+.+++...|... ..-+.++.++.+.++++++.-|+. ++
T Consensus 274 t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~LP~P~g~L~Ve~l~~~PPg~-~~ 349 (580)
T COG4618 274 TPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMPLPAPQGALSVERLTAAPPGQ-KK 349 (580)
T ss_pred CcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCCCCCCCceeeEeeeeecCCCC-CC
Confidence 99999998878888888999999999999999999999999998765432 112344556889999999987654 57
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
++|+|+||++++||.++||||||||||||.++|.|.++|.+|.|++||-|+++++.+.+-++|||.||+..||+|||.||
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeN 429 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAEN 429 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~ 432 (1139)
|.-..++.+++.+.+|++.++.||.|.++|+||||.||+.|..|||||||||+||||||.||.+++||||-|+||.+.|.
T Consensus 430 IaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~ 509 (580)
T COG4618 430 IARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509 (580)
T ss_pred HHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHH
Confidence 98777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhc
Q 048639 433 LVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 433 ~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|+++
T Consensus 510 AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 510 ALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 9999998865 5899999999999999999999999999999999999875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=620.48 Aligned_cols=201 Identities=25% Similarity=0.420 Sum_probs=166.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 35999999999999999999999999999999999999999999999 5432 59
Q ss_pred eEEcccc-cccc-ccHHHHhccCCCcC--C--HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 965 GLVQQEP-LLFS-CSIRNNICYGNEAA--S--EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 965 ~~V~Qdp-~LF~-gTIreNL~~~~~~~--s--d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++.+. ..+.++ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 4554 49999998653211 1 3456666776665321 123333 4699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe-CCEEEEe-cC
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD-KGEVVEM-GS 1115 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~-~G~ive~-G~ 1115 (1139)
|+.+|++|||||||++||..+...+.+.|++. ++ |||+|||+++.+.. ||+|++|+ +|+++++ |+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----------~~-tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY-----------QG-TVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----------CC-eEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence 99999999999999999999999999999853 23 59999999999876 99999998 8999875 78
Q ss_pred hhHHhh
Q 048639 1116 HSTLVA 1121 (1139)
Q Consensus 1116 ~~eLl~ 1121 (1139)
+++.+.
T Consensus 523 y~~y~~ 528 (635)
T PRK11147 523 YHDARQ 528 (635)
T ss_pred HHHHHH
Confidence 877754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-64 Score=619.76 Aligned_cols=199 Identities=24% Similarity=0.413 Sum_probs=165.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ +.++
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999632 3589999999999999999999999999999999999999999999875 2469
Q ss_pred eEEccccccccccHHHHhcc----CCCcCCHHHHHHHHHHcCchH-HHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLLFSCSIRNNICY----GNEAASEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~----~~~~~sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|+||++. ...++.+|... ..+..+++++.++++..++.+ .... ....||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~-----------~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcC-----------CccccCHHHHHHHHHHHHH
Confidence 99999973 22345555321 112345778899999998863 2221 2357999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE-EecChh
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV-EMGSHS 1117 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~~~ 1117 (1139)
+.+|++|||||||++||+.+...+.+.|++. ++ |||+|||+++.+.. ||||++|++|+++ ..|+++
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----------~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~ 710 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-----------QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH 710 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----------CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence 9999999999999999999999999998753 23 59999999999986 9999999999998 568877
Q ss_pred HHh
Q 048639 1118 TLV 1120 (1139)
Q Consensus 1118 eLl 1120 (1139)
+..
T Consensus 711 ~~~ 713 (718)
T PLN03073 711 DYK 713 (718)
T ss_pred HHH
Confidence 653
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=572.33 Aligned_cols=462 Identities=27% Similarity=0.417 Sum_probs=357.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
-++++|++++|++ .++|+||||++.+||++|++|+||||||||+|.|+|.|+|++|+|.+||++....++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 56999999999999999999999999999999999999999999999999998777654 5578
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDAD-DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|+.|+||..|++. ||.|||.+|++... .--+.+......+.+.+.++... ........+||+||||-|+||||+..
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~--~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD--IDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC--CChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 9999999999975 99999999976432 11111222222333456666322 22566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecCh-hhhhccchHHHH
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTH-HSLLQTSDFYNR 489 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~~~~~~ 489 (1139)
+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++++.. ||||.||.||+.+..++. .++-.
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~------- 235 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE------- 235 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-------
Confidence 999999999999999999999999998876 59999999999999976 999999999999866542 21100
Q ss_pred HHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHHHHHH
Q 048639 490 LFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVG 569 (1139)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (1139)
+ . + ..++
T Consensus 236 ---------------------------------------------------~-~----------l---------v~~M-- 242 (500)
T COG1129 236 ---------------------------------------------------D-E----------L---------VRLM-- 242 (500)
T ss_pred ---------------------------------------------------H-H----------H---------HHHh--
Confidence 0 0 0 0000
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048639 570 TVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLR 649 (1139)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~ 649 (1139)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T COG1129 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 650 NEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729 (1139)
Q Consensus 650 ~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~ 729 (1139)
.|+
T Consensus 243 ------------vGr----------------------------------------------------------------- 245 (500)
T COG1129 243 ------------VGR----------------------------------------------------------------- 245 (500)
T ss_pred ------------hCc-----------------------------------------------------------------
Confidence 000
Q ss_pred hhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALW 809 (1139)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1139)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEE
Q 048639 810 YTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQ 889 (1139)
Q Consensus 810 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~ 889 (1139)
+.-+..++ . ... ......++++
T Consensus 246 ---------------------------------------------------~~~~~~~~-~-~~~-----~~~~~~l~v~ 267 (500)
T COG1129 246 ---------------------------------------------------ELEDLFPE-P-PEE-----GIGEPVLEVR 267 (500)
T ss_pred ---------------------------------------------------chhhhccc-c-ccc-----CCCCcEEEEe
Confidence 00000010 0 000 0001236788
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH-HHhhhceEEc
Q 048639 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQIGLVQ 968 (1139)
Q Consensus 890 nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR~~i~~V~ 968 (1139)
|++.. ..++|+||++++||.+||.|--|||+|-++.+|+|..++.+|+|.+||.++.--++. ..+..|+|||
T Consensus 268 ~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ 340 (500)
T COG1129 268 NLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340 (500)
T ss_pred cCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCC
Confidence 87642 158999999999999999999999999999999999989999999999988777655 6888999999
Q ss_pred ccc----ccccccHHHHhccCC-CcCCHH-HHHHHHHHcCchHHHhhCC---CCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 969 QEP----LLFSCSIRNNICYGN-EAASEA-EIVEVSKKANIHDFISSLP---DGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 969 Qdp----~LF~gTIreNL~~~~-~~~sd~-ei~~al~~~~l~~~i~~lp---~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
-|- .+...||++|+.+.. ...+.. -+...-++.-..+++.+|. .+.+.++ .+||||.+|+++|||+|
T Consensus 341 EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVvlarwL 416 (500)
T COG1129 341 EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVVLARWL 416 (500)
T ss_pred cccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHHHHHHH
Confidence 876 355779999998652 111100 2334444444556666652 2344555 47999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
..+|+||||||||.++|..+.+.|.+.|+++. .++.+||+||-.+..+.. ||||+||.+|+|+..=+.+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA---------~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELA---------AEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHH---------HCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999886 455669999999999985 9999999999998753333
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=603.91 Aligned_cols=438 Identities=23% Similarity=0.346 Sum_probs=321.4
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE-----------ECCccCCCCCHH
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL-----------IDSLNIKDLDLK 329 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-----------~~g~~~~~~~~~ 329 (1139)
+++++|+. +..+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...+
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 48899963 235999999 9999999999999999999999999999999999997 899887543211
Q ss_pred --HHhcc----eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 330 --SLRKN----IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 330 --~~~~~----i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+.+ +.|++|.|.+|.+|++||+.... ..+ .+.+.++.+ |++........+||||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~---------~~~~~l~~l--~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERG---------KLDEVVERL--GLENILDRDISELSGGELQR 220 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHH---------HHHHHHHHc--CCchhhcCChhhCCHHHHHH
Confidence 11123 44555667778889999997421 011 122344444 44445567778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++. |.+.....
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g~~g~~~~ 296 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----GAYGVVSK 296 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----cccceecc
Confidence 99999999999999999999999999999999999987668999999999999976 99999997631 10000000
Q ss_pred cchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhh
Q 048639 483 TSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERE 562 (1139)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1139)
+ . . . +..
T Consensus 297 -------------------------~---~--------------------------~----------------~---~~~ 303 (590)
T PRK13409 297 -------------------------P---K--------------------------G----------------V---RVG 303 (590)
T ss_pred -------------------------h---h--------------------------H----------------H---HHh
Confidence 0 0 0 0 000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 563 LLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRT 642 (1139)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 642 (1139)
. .. | ...
T Consensus 304 ---------------i-------------~~------------~----------------~~~----------------- 310 (590)
T PRK13409 304 ---------------I-------------NE------------Y----------------LKG----------------- 310 (590)
T ss_pred ---------------H-------------HH------------H----------------HHh-----------------
Confidence 0 00 0 000
Q ss_pred HHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 048639 643 LYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG 722 (1139)
Q Consensus 643 l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~ 722 (1139)
|. ..
T Consensus 311 ------------~~--~~-------------------------------------------------------------- 314 (590)
T PRK13409 311 ------------YL--PE-------------------------------------------------------------- 314 (590)
T ss_pred ------------cc--hh--------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 723 GLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNI 802 (1139)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1139)
|. ++ + +
T Consensus 315 ---------------------------e~------~~-----------~--------~---------------------- 320 (590)
T PRK13409 315 ---------------------------EN------MR-----------I--------R---------------------- 320 (590)
T ss_pred ---------------------------hh------hh-----------c--------c----------------------
Confidence 00 00 0 0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc
Q 048639 803 AHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRI 882 (1139)
Q Consensus 803 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~ 882 (1139)
.... . ....+ +... . ..
T Consensus 321 --------------~~~~----------------------------------------~-~~~~~---~~~~--~---~~ 337 (590)
T PRK13409 321 --------------PEPI----------------------------------------E-FEERP---PRDE--S---ER 337 (590)
T ss_pred --------------ccCc----------------------------------------c-eecCC---Cccc--c---CC
Confidence 0000 0 00000 0000 0 00
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
...++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ +
T Consensus 338 ~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~---------- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L---------- 400 (590)
T ss_pred ceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e----------
Confidence 124899999999953 25999999999999999999999999999999999999999999986 1
Q ss_pred hceEEcccccc-ccccHHHHhccCCCcC-CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 963 QIGLVQQEPLL-FSCSIRNNICYGNEAA-SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 963 ~i~~V~Qdp~L-F~gTIreNL~~~~~~~-sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+++|+||++.+ ++.|+++|+.++.... .+..+.++++..++.+..++ + ...||||||||++|||||+
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~----~~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-------N----VKDLSGGELQRVAIAACLS 469 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-------C----cccCCHHHHHHHHHHHHHh
Confidence 59999999865 4679999998653222 23456778888888765433 2 2469999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
++|+||||||||++||+++...+.+.|+++.. ..++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~--------~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE--------EREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999999998641 224569999999999876 999999964 8877665
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=588.84 Aligned_cols=435 Identities=18% Similarity=0.220 Sum_probs=342.8
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|+++|+++ ++|++++|+++|++.+..++. .++.++..++.+++.++++++++|.+++++++++|+++++..++.+
T Consensus 92 l~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~ 169 (547)
T PRK10522 92 LDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVA 169 (547)
T ss_pred HhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 899999999999999998765 4677888888889899999999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGE---RSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWA 177 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1139)
+.++..++.++..+++.+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..........+..++......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (547)
T PRK10522 170 RVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIG 248 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 4433 45677888877777666555544444333332222222222
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccE
Q 048639 178 LIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNI 257 (1139)
Q Consensus 178 ~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i 257 (1139)
+.++++... +..+.+.+..+.++......|+..+...+..++.+..+.+|+.++++.+++.... .... .+..+.|
T Consensus 249 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~-~~~~-~~~~~~i 323 (547)
T PRK10522 249 LVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP-RPQA-FPDWQTL 323 (547)
T ss_pred HHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cccc-cCcCceE
Confidence 222222221 1123333333333344456799999999999999999999999987543321111 1111 1112469
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++||+|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++++.+.+++|++|+|
T Consensus 324 ~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 324 ELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 99999999974 3469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccc---cCCCCChHHHHHHHHHHHHccCC
Q 048639 338 VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ---RGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 338 v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~---~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+|+|++|++|++|| + ++.+++++.++++. ++.+..+..++ +|.+||||||||++||||++++|
T Consensus 402 v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 402 VFTDFHLFDQLLGPE---G-KPANPALVEKWLER---------LKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred EecChhHHHHhhccc---c-CchHHHHHHHHHHH---------cCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999 2 34455555544444 43333333333 37899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEe-cChh
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTET-GTHH 478 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~-g~~~ 478 (1139)
++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|++|++|++++. |++.
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCch
Confidence 9999999999999999999999887543 48999999999999999999999999999976 4433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=573.71 Aligned_cols=485 Identities=28% Similarity=0.404 Sum_probs=348.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|+ ++++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. .++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 489999999996 356999999999999999999999999999999999999999999998752 269
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCH--HHHHHHHH-------------------------HhcHHHHHHhCCCCCCc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDADD--EQIYNASM-------------------------MANAHSFISQLPDQYST 387 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~--~~~~~~~~-------------------------~~~~~~~i~~l~~g~~t 387 (1139)
+|++|++.+.+. ||.+.+..+...... .+...+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999865 999999887532110 11111100 02222334444 3333
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEE
Q 048639 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVV 466 (1139)
Q Consensus 388 ~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l 466 (1139)
. .....+||||||.|++|||||+.+||+|||||||++||.++..++.+.|.+. +| |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 5566899999999999999999999999999999999999999999999864 45 99999999999988 9999999
Q ss_pred eCcEEE-EecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcc
Q 048639 467 EDGQVT-ETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKG 545 (1139)
Q Consensus 467 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1139)
+.|++. +.|+++..++....-..... ... . .++
T Consensus 224 d~g~l~~y~Gny~~~~~~r~~~~~~~~-------------------------~~~----------~-------~~~---- 257 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQKAERLRQEA-------------------------AAY----------E-------KQQ---- 257 (530)
T ss_pred cCCceeEecCCHHHHHHHHHHHHHHHH-------------------------HHH----------H-------HHH----
Confidence 999875 45666654332110000000 000 0 000
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQH 625 (1139)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1139)
......
T Consensus 258 ---~~~~~~----------------------------------------------------------------------- 263 (530)
T COG0488 258 ---KELAKE----------------------------------------------------------------------- 263 (530)
T ss_pred ---HHHHHH-----------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048639 626 YFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVD 705 (1139)
Q Consensus 626 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 705 (1139)
T Consensus 264 -------------------------------------------------------------------------------- 263 (530)
T COG0488 264 -------------------------------------------------------------------------------- 263 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Q 048639 706 WRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKE 785 (1139)
Q Consensus 706 ~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1139)
..+.+++........+
T Consensus 264 -----------------------------------------------------------~~~i~r~~~~~~~~k~----- 279 (530)
T COG0488 264 -----------------------------------------------------------QEWIRRGKAAASKAKK----- 279 (530)
T ss_pred -----------------------------------------------------------HHHHHHHHhccchHHH-----
Confidence 0000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 048639 786 SIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEI-LD 864 (1139)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~-~~ 864 (1139)
..+.....+++.+. ..
T Consensus 280 ---------------------------------------------------------------a~sr~k~l~k~~~~~~~ 296 (530)
T COG0488 280 ---------------------------------------------------------------AKSRIKRLEKLEARLAE 296 (530)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHhhhhh
Confidence 00000001111110 00
Q ss_pred cCCCCCCCCC--CCCCCC--CccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 865 RKTEIEPDAP--ESSESG--RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 865 ~~~~~~~~~~--~~~~~~--~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
..+....... .-.+++ ..+--++++|+++.|+++ .++++++||.|.+|++||||||||+|||||+++|.|-..|
T Consensus 297 ~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~ 374 (530)
T COG0488 297 ERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374 (530)
T ss_pred cccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc
Confidence 0111000000 000111 112359999999999643 5799999999999999999999999999999999999999
Q ss_pred CccEEEECCcccCCCChHHHhhhceEEcccc-ccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccc
Q 048639 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVV 1018 (1139)
Q Consensus 941 ~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp-~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v 1018 (1139)
.+|+|.+.- .+ ++||.+|+- .++ +.|+.|++.-..|+..+.++...|.+.++..- ...++|
T Consensus 375 ~~G~v~~g~-~v----------~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v 437 (530)
T COG0488 375 LSGTVKVGE-TV----------KIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPV 437 (530)
T ss_pred CCceEEeCC-ce----------EEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCch
Confidence 999998853 22 499999998 444 44899999876665568899999999888543 223444
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc
Q 048639 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098 (1139)
Q Consensus 1019 ~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~ 1098 (1139)
..||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.++ .+| ||+|||+...+..
T Consensus 438 ----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----------~Gt-vl~VSHDr~Fl~~ 501 (530)
T COG0488 438 ----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-----------EGT-VLLVSHDRYFLDR 501 (530)
T ss_pred ----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-----------CCe-EEEEeCCHHHHHh
Confidence 469999999999999999999999999999999999999999999875 345 9999999999988
Q ss_pred -CCEEEEEeCCEEEEe-cChhHHhhc
Q 048639 1099 -SDVIVVMDKGEVVEM-GSHSTLVAE 1122 (1139)
Q Consensus 1099 -~DrI~vl~~G~ive~-G~~~eLl~~ 1122 (1139)
|++|+++++ ++.++ |++++..+.
T Consensus 502 va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 502 VATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred hcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999999999 88887 888888754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=586.02 Aligned_cols=513 Identities=14% Similarity=0.130 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 565 RLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAK---QEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRR 641 (1139)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 641 (1139)
.+++.+++.++...+....+++.+.+++.....+.. .....+.++++++.++..+..++..++......+...++|+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666654332111 11223444455556666677777777778888888999999
Q ss_pred HHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Q 048639 642 TLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLV-VDWRMALVAWAVMPCHF 720 (1139)
Q Consensus 642 ~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~l~lv~~~~~p~~~ 720 (1139)
+.+++....++.|||. ++|++++|+++|++.+.+.+...+..++..++.++++++.++. .+|.+++++++.+|+.+
T Consensus 177 ~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~ 253 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATG 253 (659)
T ss_pred HHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999988899999983 6899999999999999999999999999999999988877775 99999999999999999
Q ss_pred HHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 721 IGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLW 800 (1139)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1139)
++..++.+...+..++.++..+.+.+.+.|.++|+++||+|+.++.+.+++.+..++..+...+.....+....+...+.
T Consensus 254 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 333 (659)
T TIGR00954 254 VVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVA 333 (659)
T ss_pred HHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999988888877777666666665554
Q ss_pred HH--HHHHHHHHHHHHHh-c----CCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 048639 801 NI--AHAVALWYTAVLID-K----KQATFRDGIRAYQ----IFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEI 869 (1139)
Q Consensus 801 ~~--~~~~~~~~~~~l~~-~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 869 (1139)
.. ..++.++.+...+. . |.++.+..+..+. ++.....++..+.....++..+..+.+|+.++++.+++.
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 334 KYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22222333332332 2 6788887655333 244557788889999999999999999999998754332
Q ss_pred CC------CCCC--C--------------CCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCH
Q 048639 870 EP------DAPE--S--------------SESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGK 927 (1139)
Q Consensus 870 ~~------~~~~--~--------------~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGK 927 (1139)
.. ..+. . .......+.|+++||+|+|+++ .++|+|+||+|++||++||+|||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGK 491 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGK 491 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCH
Confidence 10 0000 0 0001134579999999999742 369999999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC-------CcCCHHHHHHHHHH
Q 048639 928 SSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN-------EAASEAEIVEVSKK 1000 (1139)
Q Consensus 928 STL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-------~~~sd~ei~~al~~ 1000 (1139)
|||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++||+.++. +..++++++++++.
T Consensus 492 STLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~ 560 (659)
T TIGR00954 492 SSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDN 560 (659)
T ss_pred HHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHH
Confidence 9999999999999999999874 67899999999999999999999863 34678899999999
Q ss_pred cCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCcccc
Q 048639 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGEL 1080 (1139)
Q Consensus 1001 ~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~ 1080 (1139)
+++++++++ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.+++.+++
T Consensus 561 ~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----------- 627 (659)
T TIGR00954 561 VQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----------- 627 (659)
T ss_pred cCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH-----------
Confidence 999999987 999999986 4679999999999999999999999999999999999999999999985
Q ss_pred CCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1081 ASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1081 ~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
. ++|+|+||||++++..||+|++|+.
T Consensus 628 ~-~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 628 F-GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred c-CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 2 3459999999999999999999973
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-61 Score=533.36 Aligned_cols=463 Identities=24% Similarity=0.434 Sum_probs=360.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-HHHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 334 (1139)
.++++++++.|| ...+++||||++++||+.||+|+||+|||||+++|.|+|+|++|+|.+||+++.-.++ +..+..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3569999999999999999999999999999999999999999999999999986655 567889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
||+|+|++.|++. |+.|||.+|.+......+..+.....+.+..++. |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999976 9999999998642111111112222233444444 555556778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
|++||||||||-|-|.....+++.++.+. .|+|||+|||++.++.. |||+-||.+||++..-++ ..+
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~~--------- 227 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VAE--------- 227 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CCC---------
Confidence 99999999999999999999999998875 59999999999999987 999999999998643221 000
Q ss_pred hhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccchhhHHHHhhchhhHHHHHHHHH
Q 048639 492 TMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTV 571 (1139)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (1139)
. ..+ + + ..++
T Consensus 228 --------------------~--------------------------t~~-e----------l---------a~lM---- 237 (501)
T COG3845 228 --------------------T--------------------------TEE-E----------L---------AELM---- 237 (501)
T ss_pred --------------------C--------------------------CHH-H----------H---------HHHh----
Confidence 0 000 0 0 0000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 048639 572 AAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNE 651 (1139)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~ 651 (1139)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048639 652 IAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQ 731 (1139)
Q Consensus 652 ~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~ 731 (1139)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 732 GFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYT 811 (1139)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 811 (1139)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeE
Q 048639 812 AVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNI 891 (1139)
Q Consensus 812 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nv 891 (1139)
....+. .+.+ .. ...+. .--++++|+
T Consensus 238 ----vG~~v~-------------------------------------------~~~~-~~----~~~pg--~~vL~V~~L 263 (501)
T COG3845 238 ----VGREVV-------------------------------------------LRVV-KP----PSTPG--EVVLEVEDL 263 (501)
T ss_pred ----cCCccc-------------------------------------------cccc-cC----CCCCC--CeEEEEeee
Confidence 000000 0000 00 00001 124899999
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc-CCCChHHHh-hhceEEcc
Q 048639 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI-KEYNLRRLR-SQIGLVQQ 969 (1139)
Q Consensus 892 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di-~~~~l~~lR-~~i~~V~Q 969 (1139)
+..=+ + +.+.+++|||+|++||.+||.|-.|-|-|.|+.+|.|+..|.+|+|.++|.|+ ...+....| ..++|||.
T Consensus 264 ~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPe 341 (501)
T COG3845 264 SVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPE 341 (501)
T ss_pred EeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCCh
Confidence 98643 2 34689999999999999999999999999999999999999999999999997 667787766 56999999
Q ss_pred ccc----cccccHHHHhccCCCc---------CCHHHHHHHHHHcCchHHHhhC---CCCccccccCCCCCCChHHHHHH
Q 048639 970 EPL----LFSCSIRNNICYGNEA---------ASEAEIVEVSKKANIHDFISSL---PDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 970 dp~----LF~gTIreNL~~~~~~---------~sd~ei~~al~~~~l~~~i~~l---p~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
|.+ ..+-|+.||+.++... ..-.++.+..++ .++.+ +.+.++++ .+||||+.||+
T Consensus 342 dR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~~a----~~LSGGNqQK~ 412 (501)
T COG3845 342 DRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDAPA----RSLSGGNQQKL 412 (501)
T ss_pred hhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCcch----hhcCCcceehh
Confidence 984 5678999999765321 122333333222 22222 34555554 47999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
-+||-|.++|++||..+||-+||..+.+.|++.|.+.. ..++.|+.|+-+|+.+.. ||||.||.+|+|+.
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r---------~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR---------DAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH---------hcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 99999999999999999999999999999999999876 455569999999999987 99999999999998
Q ss_pred ecChhH
Q 048639 1113 MGSHST 1118 (1139)
Q Consensus 1113 ~G~~~e 1118 (1139)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 887776
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=561.65 Aligned_cols=427 Identities=15% Similarity=0.165 Sum_probs=364.0
Q ss_pred CCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 23 GEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVI-CCWEVSLLIFLVVPMILVIGATYTKR 101 (1139)
Q Consensus 23 ~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l~l~~l~~~~~~~~~~~~~~~~ 101 (1139)
.++.+||. ++|++++|+++|++.+.+.+...+..++.+++.+++.++.++. ++|.+++++++.+|+.+++..++.++
T Consensus 185 ~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~ 262 (659)
T TIGR00954 185 YKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPP 262 (659)
T ss_pred EEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccc
Confidence 45567774 5899999999999999999999999999999999888887776 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 048639 102 MNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFC--CWALI 179 (1139)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 179 (1139)
+.+..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..++.+...++..++... ..++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 342 (659)
T TIGR00954 263 IGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGL 342 (659)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888888877776542 22223
Q ss_pred HHHHHHHHH-h----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc-------
Q 048639 180 IWVGAVVVT-A----KRSTGGEVLA-AVMS---ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISY------- 243 (1139)
Q Consensus 180 ~~~g~~~v~-~----~~l~~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~------- 243 (1139)
++.|...+. . |.+|.|.+++ ++.+ +..+..|+..+...+..++++.++.+|+.++++.+++...
T Consensus 343 ~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~ 422 (659)
T TIGR00954 343 VAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPR 422 (659)
T ss_pred HHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 334443332 2 6799888766 4433 4455788999999999999999999999999975332110
Q ss_pred -CC-CC--------------ccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 244 -SS-KG--------------KELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 244 -~~-~~--------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
.. .+ .......+.|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 423 VEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred cccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 00 00 001112346999999999974 2469999999999999999999999999999999999
Q ss_pred ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHh
Q 048639 308 FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN-------MDADDEQIYNASMMANAHSFISQ 380 (1139)
Q Consensus 308 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~-------~~~~~~~~~~~~~~~~~~~~i~~ 380 (1139)
+++|++|+|.+++ +++++||||+|++|++|++|||.++. +..+++++.++++.+++++++++
T Consensus 501 l~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 501 LWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 9999999999864 56899999999999999999999874 33567888999999999988877
Q ss_pred CCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhcc
Q 048639 381 LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNA 460 (1139)
Q Consensus 381 l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 460 (1139)
|.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.|
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYH 645 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhC
Confidence 999999876 57799999999999999999999999999999999999999999998764 89999999999999899
Q ss_pred CEEEEEeC
Q 048639 461 DMIAVVED 468 (1139)
Q Consensus 461 d~i~~l~~ 468 (1139)
|++++|+.
T Consensus 646 d~il~l~~ 653 (659)
T TIGR00954 646 EYLLYMDG 653 (659)
T ss_pred CEEEEEeC
Confidence 99999973
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=470.29 Aligned_cols=237 Identities=30% Similarity=0.514 Sum_probs=221.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|.|+|+||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.|||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999742 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++|+++|++++. ..++++++++++.+++.+++.++|++|++.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998653 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+||||||||++||+.+++.+++.|++.+ .+ +|+|+||||++++..||||+||++|+++++|+|++|+++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~---------~~-~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~- 226 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAF---------AD-CTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE- 226 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc---------CC-CEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-
Confidence 9999999999999999999999999764 33 459999999999999999999999999999999999986
Q ss_pred CChHHHHHHHH
Q 048639 1124 QGVYSRLYQLQ 1134 (1139)
Q Consensus 1124 ~g~f~~l~~~~ 1134 (1139)
.+.|++++...
T Consensus 227 ~~~~~~~~~~~ 237 (275)
T cd03289 227 KSHFKQAISPS 237 (275)
T ss_pred cHHHHHHHhhc
Confidence 68999998654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-53 Score=419.69 Aligned_cols=218 Identities=30% Similarity=0.555 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC-CCHHHHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD-LDLKSLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~ 334 (1139)
.|+++|++++|++ ..+|+|||++|++||+++|+|||||||||||++|.|+.+|++|+|.+||.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999974 459999999999999999999999999999999999999999999999987743 378889999
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+|+|+|+..||+- |+.||+.++.-. .+.++ ....+.+.++++ |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~e-----A~~~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAE-----AREKALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHH-----HHHHHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999975 999999987421 12222 122234566666 666777788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+.+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999876 48999999999999988 999999999999999999998764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=404.37 Aligned_cols=219 Identities=33% Similarity=0.551 Sum_probs=196.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC-CCChHHHhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK-EYNLRRLRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~~~l~~lR~~ 963 (1139)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999995 346999999999999999999999999999999999999999999999998764 3378899999
Q ss_pred ceEEcccccccc-ccHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+|+|+|+..||+ -|+.||+.++-- ..+ ++.-.+.|+++||.|..+..| .+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 599999987621 112 344567789999999888777 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||..+|+++++|||||||||+.-..|.+.++++. .++.|.|+|||.+...++ ||||+.||+|+|+|.|
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA---------~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA---------EEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH---------HcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 999999999999999999999999999999999886 566779999999999998 9999999999999999
Q ss_pred ChhHHhhccCCh
Q 048639 1115 SHSTLVAESQGV 1126 (1139)
Q Consensus 1115 ~~~eLl~~~~g~ 1126 (1139)
+|+++..+|+..
T Consensus 219 ~p~~~f~~p~~~ 230 (240)
T COG1126 219 PPEEFFDNPKSE 230 (240)
T ss_pred CHHHHhcCCCCH
Confidence 999999887654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=437.80 Aligned_cols=198 Identities=26% Similarity=0.407 Sum_probs=163.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|.++||+|+|++.+ ..++++||-|.++++||+|||||+|||||++++.+...|..|.|.-.-. -++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 599999999997543 6899999999999999999999999999999999999999999865321 123
Q ss_pred eEEccc---cccccccHHHHhccCCCc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 GLVQQE---PLLFSCSIRNNICYGNEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~~V~Qd---p~LF~gTIreNL~~~~~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++-.|+ ...++-|.-+++.+-.++ -..+++...+.+.||....+.. ++ ++||+|||.||++||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHh
Confidence 333443 345677888888765453 5667889999999997544333 33 479999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe-cChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM-GSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~-G~~~ 1117 (1139)
++|.||||||||++||.+|-....++|.++ .++ ||+|+|+...|.. +++|.+.++|.+... |...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~-----------~Gg-vv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF-----------PGG-VVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc-----------CCc-eeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 999999999999999999999999999864 345 9999999999988 999999999998654 4443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-50 Score=418.91 Aligned_cols=222 Identities=35% Similarity=0.559 Sum_probs=195.6
Q ss_pred EEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHHH
Q 048639 886 IEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRL 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~l 960 (1139)
|+|+||++.|+.. +..++|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 1246999999999999999999999999999999999999999999999998887775 4567
Q ss_pred hhhceEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 961 RSQIGLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
|++||+|+|++.|++ .|+.+|+.|.-. ..+ ++++.+.|+.+||.|+..+-| ++||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999997 899999998532 222 346778899999988766654 68999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||..+|+||++|||||+|||+|.+.|.+.|++.. .+-+.|+++|||-++.+++ ||||.||++|+|+|
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In--------~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDIN--------RELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHH--------HHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 99999999999999999999999999999999998764 1345679999999999998 99999999999999
Q ss_pred ecChhHHhhccCCh
Q 048639 1113 MGSHSTLVAESQGV 1126 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~ 1126 (1139)
.|+-.++..+|+..
T Consensus 223 ~G~v~~vF~~Pk~~ 236 (339)
T COG1135 223 EGTVSEVFANPKHA 236 (339)
T ss_pred eccHHHhhcCcchH
Confidence 99999999887543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=404.45 Aligned_cols=225 Identities=33% Similarity=0.599 Sum_probs=193.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999997 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC--ccccccCCCCChHHHHHHHHHHHHc
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS--TELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
||-|..-||+. ||.|||.+-.. ..+.+++.+ .+++.+..+ |++ ......+.+|||||+|||.+||||.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999975 99999987532 122333322 223344433 333 2456778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc--hH
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS--DF 486 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~--~~ 486 (1139)
.+|+|+|+|||++||||.++..+++.++++.+ ++|+|+||||++++-+ +|||.+|++|+|+..++|++++.++ +.
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 99999999999999999999999999988764 8999999999999755 9999999999999999999998763 34
Q ss_pred HHHHH
Q 048639 487 YNRLF 491 (1139)
Q Consensus 487 ~~~~~ 491 (1139)
.+.++
T Consensus 232 V~~f~ 236 (309)
T COG1125 232 VEDFF 236 (309)
T ss_pred HHHHh
Confidence 44444
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=443.05 Aligned_cols=227 Identities=32% Similarity=0.487 Sum_probs=198.9
Q ss_pred CccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccC--
Q 048639 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIK-- 953 (1139)
Q Consensus 881 ~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~-- 953 (1139)
+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 445789999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCChHHHhhhceEEccccccccccHHHHhccCCC--cCCHHH-----HHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 954 EYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AASEAE-----IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 954 ~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~sd~e-----i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
.+++..+|++++||||+|.+|++|+++||+++.. ..++++ +.++++.++++ +++++.+++.|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCC
Confidence 4566788999999999999999999999996521 234444 45566777764 345678899999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||+|||||++++|+|||||||||+||+++.+.+++.|++.+ ++ +|+|+|||+++++.+ ||||+||
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~---------~~-~Tii~iTH~l~~i~~~~Driivl 297 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK---------KK-YSIIIVTHSMAQAQRISDETVFF 297 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999875 44 459999999999998 9999999
Q ss_pred eCCEEEEecChhHHhhccCC
Q 048639 1106 DKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g 1125 (1139)
++|+|+|.|+|+++..++..
T Consensus 298 ~~G~i~e~g~~~~l~~~~~~ 317 (329)
T PRK14257 298 YQGWIEEAGETKTIFIHPKN 317 (329)
T ss_pred ECCEEEEeCCHHHHhcCCCc
Confidence 99999999999999876543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=414.64 Aligned_cols=221 Identities=33% Similarity=0.544 Sum_probs=190.7
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHH
Q 048639 257 IDIRDVCFAYPSR--PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSL 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~--~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~ 331 (1139)
|++++||+.|+.. ....+|+||||+|++||+.+|||+||+|||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999853 12469999999999999999999999999999999999999999999999998877764 556
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
|++||++||++.|++ .||++|+.|...- .+.+++.+ ...+.++-+ |+....+..+.+|||||||||+|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~-----RV~elLelV--gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ-----RVAELLELV--GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999997 6999999996532 22333222 222334433 5566677888999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
||..+|+|||.|||||||||+|.+.|.+.|++..+ |-|+++|||.++.++. |||+.||++|+++|+|+..++..++
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999999988653 8999999999999988 9999999999999999999997654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=428.67 Aligned_cols=236 Identities=29% Similarity=0.508 Sum_probs=219.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++..++...+|++|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999643 3569999999999999999999999999999999999998 799999999999988999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+||||+|++|++|+++|+.... ..++++++++++..++.+++..+|+++++.++++|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999997432 246788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|+||||||++||+.+...+.+.|++..+++|+|+||||++.+..||||++|++|++++.|+++++++..+.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999999999998777899999999999998899999999999999999999999888888887543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=390.54 Aligned_cols=219 Identities=34% Similarity=0.539 Sum_probs=196.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc-----cEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-----GDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 327 (1139)
..++++|+++.|++ +.+|+|||++|++++++|++|||||||||||+++.++.+..+ |+|.++|+|+.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999973 459999999999999999999999999999999999998875 999999999965 57
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
...+|++||+|+|.|.-|+.||+||+.||..- .-++.+.++++.+.+++.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998431 124556777888877765543 34567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||+||||||.-+|+|||||||||||||.+...|.+.|.+++++-|+|+|||.+..+.+ +|+...+..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999989999999999999877 999999999999999999988
Q ss_pred hcc
Q 048639 481 LQT 483 (1139)
Q Consensus 481 ~~~ 483 (1139)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=383.26 Aligned_cols=221 Identities=33% Similarity=0.523 Sum_probs=197.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-----cEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE-----GIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--~~ 956 (1139)
..++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|-|+.+... |+|.+||.||.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999995 3469999999999999999999999999999999999999875 999999999976 57
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
.-.||+++|+|+|.|.-|+.||+||+.||.. ..-|+-++++|++|.|||-+.. . +.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---r----L~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---R----LHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---H----hhCCccCCChhHH
Confidence 8899999999999999999999999999832 1234568899999999998753 3 3455677999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
|||||||||.-+|+||+||||||+|||.+...|.+.|.++. +.-||++|||.+.-..+ +|+...+-.|+
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk----------~~yTIviVTHnmqQAaRvSD~taFf~~G~ 225 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK----------KKYTIVIVTHNMQQAARVSDYTAFFYLGE 225 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH----------hccEEEEEeCCHHHHHHHhHhhhhhcccE
Confidence 99999999999999999999999999999999999999774 34469999999998877 99999999999
Q ss_pred EEEecChhHHhhccC
Q 048639 1110 VVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~ 1124 (1139)
++|+|+-+++..+|+
T Consensus 226 LvE~g~T~~iF~~P~ 240 (253)
T COG1117 226 LVEFGPTDKIFTNPK 240 (253)
T ss_pred EEEEcCHHhhhcCcc
Confidence 999999999997754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=388.95 Aligned_cols=222 Identities=31% Similarity=0.548 Sum_probs=197.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccc-ccHHHHhccC------CCcCCHHHHHHHHHHcCch--HHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYG------NEAASEAEIVEVSKKANIH--DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~------~~~~sd~ei~~al~~~~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
||-|..-||+ -||.+||..- +...-++++.+.++.++|. +|.++.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999995 6999999753 1122345678889999996 4777766 47999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||..+|+||+||||.+||||-++..+|+-+.+... +-++|+|+|||+++.... +|||+||++|+|+.+|+
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~--------~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQK--------ELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH--------HhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 999999999999999999999999999999887641 224569999999998765 99999999999999999
Q ss_pred hhHHhhccCChHHH
Q 048639 1116 HSTLVAESQGVYSR 1129 (1139)
Q Consensus 1116 ~~eLl~~~~g~f~~ 1129 (1139)
|++++++|...|-+
T Consensus 220 P~~il~~Pan~FV~ 233 (309)
T COG1125 220 PDEILANPANDFVE 233 (309)
T ss_pred HHHHHhCccHHHHH
Confidence 99999988766643
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=425.60 Aligned_cols=227 Identities=31% Similarity=0.508 Sum_probs=193.8
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--C
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--L 326 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~ 326 (1139)
.+.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4579999999999642 3569999999999999999999999999999999999996 579999999999973 4
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 327 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
+...+|+.++||||+|++|++|++|||.|+.. ..++++.++......++ ...+++++++.+++++.+||||||||+
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~--~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLK--SAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHH--HcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 55678899999999999999999999998642 12333332222111111 112445567889999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+||||++++|+||||||||++||+++...+.+.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|+++++...
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988888999999999999987 999999999999999999998754
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=409.84 Aligned_cols=241 Identities=32% Similarity=0.578 Sum_probs=221.4
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..|.|+++|++++|++. +.++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24699999999999999999999999999999999999999999999999999998888999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++++|++|+|.+|++|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 234667889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|++|||||||++||+++.+.+.+.+++.. . ++|+|++||+++.+..||||++|++|++++.|+++++.+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~---------~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAF---------A-DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhc---------C-CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999998753 3 346999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHH
Q 048639 1122 ESQGVYSRLYQLQ 1134 (1139)
Q Consensus 1122 ~~~g~f~~l~~~~ 1134 (1139)
..++.|++++..+
T Consensus 244 ~~~~~~~~~~~~~ 256 (257)
T cd03288 244 QEDGVFASLVRTD 256 (257)
T ss_pred ccchHHHHHHhcc
Confidence 7778899988654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=444.62 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=167.6
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCcccCCCChHHHhhhceEEcccc-cccccc
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFSCS 977 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp-~LF~gT 977 (1139)
+..|+|||=-++||.-.|++|+||||||||++.|.+=..- -+|+|+|||.+..+ +..++.+|||.|++ |+=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 4689999999999999999999999999999999987542 37999999998765 78999999999977 666779
Q ss_pred HHHHhccCC----C-cCCHH----HHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC-CEEE
Q 048639 978 IRNNICYGN----E-AASEA----EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP-AIML 1047 (1139)
Q Consensus 978 IreNL~~~~----~-~~sd~----ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p-~ILl 1047 (1139)
|||-|.+.. | +.+++ -+.++.+..+|.++- |..||..|+.||..||.|+.||--|+.|| .||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999997642 1 23333 367778888887664 45688888999999999999999999999 9999
Q ss_pred eeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh--hcCCEEEEEe-CCEEEEecChhH
Q 048639 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV--INSDVIVVMD-KGEVVEMGSHST 1118 (1139)
Q Consensus 1048 LDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti--~~~DrI~vl~-~G~ive~G~~~e 1118 (1139)
||||||+||+++...|.+.+|+.. ..+.||++.-|.++.. +..|+++.|+ +|+.|-+|+.-+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla---------~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLA---------DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHH---------hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999886 3334599999999864 4599999997 588999887544
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=404.75 Aligned_cols=235 Identities=50% Similarity=0.818 Sum_probs=215.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 346999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|+||++.+|+.|+++||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986544556778888888999999999999999999888999999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g 1125 (1139)
|||||||++||+.+.+.+.+.|++.. . ++|+|++||+++.+..||+|++|++|++++.|++++++++ .+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~ 228 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDIC---------A-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NG 228 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cC
Confidence 99999999999999999999999764 3 3569999999999988999999999999999999999976 78
Q ss_pred hHHHHHH
Q 048639 1126 VYSRLYQ 1132 (1139)
Q Consensus 1126 ~f~~l~~ 1132 (1139)
.|..+++
T Consensus 229 ~~~~~~~ 235 (237)
T cd03252 229 LYAYLYQ 235 (237)
T ss_pred hHHHHHh
Confidence 8888765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=403.63 Aligned_cols=234 Identities=46% Similarity=0.743 Sum_probs=213.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++++|+.|++||+.++.+....+++.+++...++.+.++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654455666677777778888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++....+.|+.++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999998877899999999999997799999999999999999999988777776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=397.38 Aligned_cols=222 Identities=31% Similarity=0.541 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 35699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-------C--H-HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDA-------D--D-EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~-------~--~-~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
|||||++.. +.-||+|-+.+|+... + | +.+.++++..++.++ ..+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 999999754 5669999999995421 1 2 234445555544433 3445668999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchh-ccCEEEEEeCcEEEEecChhhhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
.|||||+++|+||+||||||+||...+..+++.++++. +|+|+|+|.||++.+. .||++++|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 3799999999999875 49999999999999999999987
Q ss_pred ccchHHHHHHh
Q 048639 482 QTSDFYNRLFT 492 (1139)
Q Consensus 482 ~~~~~~~~~~~ 492 (1139)
.. +..++.|.
T Consensus 228 T~-e~l~~Vyg 237 (258)
T COG1120 228 TE-ENLREVYG 237 (258)
T ss_pred CH-HHHHHHhC
Confidence 53 44444443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=378.64 Aligned_cols=228 Identities=32% Similarity=0.573 Sum_probs=192.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HH
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SL 331 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 331 (1139)
..|++++|+++|++ +.+++||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 46999999999974 4699999999999999999999999999999999999999999999999999888754 56
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCcc-ccccCCCCChHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTE-LGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-i~~~g~~LSgGqkqRi~l 406 (1139)
|+++|+++|+-.||+. ||+||+.|...+ .+.+.+.+.+ .. .++.. |+... ....+++||||++.|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-LM----KLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-HH----HHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8999999999999976 999999985332 2233332221 11 12222 34333 334577999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+||||++++.. |||++++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988765 8999999999999977 999999999999999999999876
Q ss_pred c-hHHHHHHh
Q 048639 484 S-DFYNRLFT 492 (1139)
Q Consensus 484 ~-~~~~~~~~ 492 (1139)
+ .+.++++.
T Consensus 237 d~P~v~qf~~ 246 (263)
T COG1127 237 DDPWVRQFFN 246 (263)
T ss_pred CCHHHHHHhc
Confidence 4 45555554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=380.01 Aligned_cols=231 Identities=32% Similarity=0.550 Sum_probs=194.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---HHHHh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKSLR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 332 (1139)
.|+++||++.||+ ++.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++..+. .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999985 467999999999999999999999999999999999999999999999999987766 56778
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNMDADD--EQ---IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
++|||++|++.|.+. |+.+|++.|...... .. +........+.+.++++ |+....-.+..+|||||+|||+|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHH
Confidence 999999999999876 999999988643210 00 01112223334455665 55555667788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+++|+|+|-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.+++ ||||+-|++|+|+.+|+.+|+-
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~-- 236 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELT-- 236 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhh--
Confidence 999999999999999999999999999999998864 58999999999999976 9999999999999999999963
Q ss_pred chHHHHHHh
Q 048639 484 SDFYNRLFT 492 (1139)
Q Consensus 484 ~~~~~~~~~ 492 (1139)
......+|.
T Consensus 237 ~~~~~~iYg 245 (258)
T COG3638 237 DEALDEIYG 245 (258)
T ss_pred HHHHHHHhc
Confidence 334444443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=404.94 Aligned_cols=195 Identities=24% Similarity=0.336 Sum_probs=162.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
..+++.+|+|.|+..+. +.+.++++++..-+++++||++|+||||+++++.+-..|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46999999999964322 799999999999999999999999999999999999999999998865 678
Q ss_pred ceEEccccccc-cccHH--HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 964 IGLVQQEPLLF-SCSIR--NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 964 i~~V~Qdp~LF-~gTIr--eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
|+|-.|.-+=| +-.+- +-+.--.|..+++|+++.|...|+..-+...+ -..||||||-|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhc
Confidence 99999976533 11111 11110124458999999999998876554322 2469999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
.+|.+|||||||.+||.++-..+-++|+.. ++. ||+|||+.+.+.. |+.++|.++|+|.-
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----------~GG-Vv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNF-----------NGG-VVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhc-----------CCc-EEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999863 455 9999999999987 99999999999976
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=383.02 Aligned_cols=202 Identities=32% Similarity=0.531 Sum_probs=171.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.+++++++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 5699999999999999999999999999999999999999999999999887433 3579
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+||+|++.||+- ||+||+.++.... ..++ ..+.+.+.++.. |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e-----~~~~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAE-----ARERAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHh-----HHHHHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999986 9999999986532 1111 111333455555 55555667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEE
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVT 472 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~ 472 (1139)
+|+||+||||++|||+.|+..+++.+.++. .++|+++|||+++++-. +|||++|.+ |+|.
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999998865 37999999999999865 999999998 4453
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=380.85 Aligned_cols=209 Identities=34% Similarity=0.551 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---H-
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---L- 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~- 331 (1139)
++++|+++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 246999999999999999999999999999999999999999999999999999887543 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCcccc-ccCCCCChHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELG-QRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~-~~g~~LSgGqkqRi~lA 407 (1139)
|++||||+|+..|++. |++|||.+... .....+. ...+.+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~-----~~~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR-----KRAAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHH-----HHHHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 4679999999999875 99999996311 1111111 11122333443 4443333 66889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEE
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVT 472 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 472 (1139)
|||+.+|+|++.||||++||.++.+.+++.+.++. .|+|+|+|||+......|||++.|.||++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999874 388999999999999999999999999954
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-46 Score=360.81 Aligned_cols=207 Identities=31% Similarity=0.497 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 333 (1139)
|+|+||++.|++. +++|+||||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|+|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 579999999999999999999999999999999999999999999999999977654 45899
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNM------DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
+||+|+||..|... ||+||+.|... ..-.+++.++++.+++.+-...+|. .||||||||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999988765 99999998642 1123456667777777666666664 899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
|||+..+|++||-||||.+|||.+...|++.+.++. .|.||++.||+.+.+.. --|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999998875 49999999999999987 67999999999986543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=404.82 Aligned_cols=213 Identities=32% Similarity=0.589 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++. .+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++.++++++ ++|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2999999999999999999999999999999999999999999999999999988874 789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
|+|||+..||+. ||+|||.|+.... .++++.++++..++...+++ ++.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-----------~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-----------KPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-----------CcccCChhhHHHHHHHH
Confidence 999999999976 9999999986422 24455555555555555444 45689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
||.++|+++|||||+|+||++.+..+...|+++.+ +.|+|+||||..++.. +|||.||++|+|.+.|++.|+..++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999999988754 7899999999988765 9999999999999999999998653
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=373.32 Aligned_cols=228 Identities=34% Similarity=0.520 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC-hHHHhh
Q 048639 885 RIEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~lR~ 962 (1139)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+..... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975421 15999999999999999999999999999999999999999999999997766543 336788
Q ss_pred hceEEccccc--cc-cccHHHHh----ccCCCcCCHHHHHHHHHHcCchH-HHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEPL--LF-SCSIRNNI----CYGNEAASEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp~--LF-~gTIreNL----~~~~~~~sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
.+.+|+|||. |= .-||++-| ....-....++++++++.+||.+ |..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999995 21 23555444 33211234567999999999975 455555 469999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||.-+|++||||||||+||.-..+.|++.+.+... ..+.|.|+|||+++.+.. ||||+||++|+++|.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~--------~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK--------ERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH--------hcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 99999999999999999999999999999999988751 234469999999999998 999999999999999
Q ss_pred cChhHHhhccCChHHHHH
Q 048639 1114 GSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f~~l~ 1131 (1139)
++-.++...+.-.|.+..
T Consensus 224 ~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 224 GPTEELLSHPSHPYTREL 241 (252)
T ss_pred echhhhhcCCccHHHHHH
Confidence 999999977666676544
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=394.90 Aligned_cols=235 Identities=51% Similarity=0.863 Sum_probs=216.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 235999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|+||+|.+|++|+++|+.++.+..+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987555667778888999999999999999999999998999999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g 1125 (1139)
|||||||++||+++...+.+.|++.. + ++|+|+++|+++.+..||++++|++|++++.|+++++.++ .+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~ 227 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVS---------K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GG 227 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-cc
Confidence 99999999999999999999998764 3 4569999999999988999999999999999999999875 67
Q ss_pred hHHHHHHH
Q 048639 1126 VYSRLYQL 1133 (1139)
Q Consensus 1126 ~f~~l~~~ 1133 (1139)
.|+.++..
T Consensus 228 ~~~~~~~~ 235 (236)
T cd03253 228 LYAEMWKA 235 (236)
T ss_pred HHHHHHhc
Confidence 78777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=408.10 Aligned_cols=214 Identities=34% Similarity=0.588 Sum_probs=187.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999997 35699999999999999999999999999999999999999999999999999998876 578
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM---DADDE----QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
|++|||+..||+- ||+|||.||.. ....+ ++.++++..++.++ -..++.+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~-----------~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF-----------ADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh-----------hhhChhhhChHHHHHHHH
Confidence 9999999999975 99999999965 11222 44455555544443 345567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchh-ccCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||..+|++||||||.||||.+-+..++..++++.+ |.|.|+||||.++.. .+|||.||++|+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999988887653 899999999998875 5999999999999999999999875
Q ss_pred c
Q 048639 484 S 484 (1139)
Q Consensus 484 ~ 484 (1139)
+
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=353.09 Aligned_cols=209 Identities=33% Similarity=0.600 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
+.+++|.|+|...+ -..+++|++||++||+||||||||||+++|+|+..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999996322 367899999999999999999999999999999999999999999998876664 45799
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM-D-----ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+++||..||.- ||.+||.+|.. . ...+++..++...++..+.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999975 99999999953 1 235678888889999999999985 799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+++.+||+||||+|+|||.-+..+...+.++. ++.|++||||+++.+.. +|+++++++|||.++|+.+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999888765 47899999999999876 999999999999999999998764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=411.83 Aligned_cols=223 Identities=31% Similarity=0.492 Sum_probs=192.6
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
|+++||+++|+... ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred hhceEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++|+||||++.+|. .|+++|+.++.. ..+ ++++.++++.+++.++.++.| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999986421 122 345778899999987655443 479999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+|||||||||+||+.+...+.+.|++... +.+.|+|+|||+++.+.. ||||++|++|+|+|.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~--------~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINR--------RLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999998641 224569999999999976 999999999999999
Q ss_pred cChhHHhhccCChH
Q 048639 1114 GSHSTLVAESQGVY 1127 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f 1127 (1139)
|++++++.++...+
T Consensus 223 g~~~~v~~~p~~~~ 236 (343)
T TIGR02314 223 GTVSEIFSHPKTPL 236 (343)
T ss_pred cCHHHHHcCCCcHH
Confidence 99999987654444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=393.59 Aligned_cols=230 Identities=55% Similarity=0.879 Sum_probs=208.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 236999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++++|+.|++||+.++.+....+++.+.+....+.+.++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455566666777778889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHH
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 487 (1139)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++....+.|
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 99999999999999999999999887789999999999999889999999999999999999886654443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=389.52 Aligned_cols=221 Identities=43% Similarity=0.690 Sum_probs=205.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999742 3469999999999999999999999999999999999999999999999999998888889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++|+||+|.+|++|+++|+.+.. ..+++++.++++..++.+++..+|.|+++.+++.+.+||+|||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
++|||||||++||+.+.+.+.+.|++.. .+ +|+|++||+++.+..||+|++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF---------KD-CTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc---------CC-CEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999999764 33 569999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=392.72 Aligned_cols=233 Identities=53% Similarity=0.902 Sum_probs=212.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|+++ ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|+||+|.+|..|++||+.++....+.+++.+.++..++.++++.+|.|+++..+.....||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987554566778888889999999999999999999988999999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g 1125 (1139)
|||||||++||+.+...+.+.|++.. + ++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM---------K-NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc---------C-CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Cc
Confidence 99999999999999999999999764 3 3569999999999988999999999999999999999876 56
Q ss_pred hHHHH
Q 048639 1126 VYSRL 1130 (1139)
Q Consensus 1126 ~f~~l 1130 (1139)
.|+.+
T Consensus 229 ~~~~~ 233 (234)
T cd03251 229 VYAKL 233 (234)
T ss_pred chhhh
Confidence 66543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=392.35 Aligned_cols=233 Identities=52% Similarity=0.844 Sum_probs=211.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 245999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++++|+.|++||+.++.+....+++...+....+.+.+..+|.|+++.++.++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556666777777788888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
+||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......++..+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999988766899999999999998899999999999999999998877666665544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=390.54 Aligned_cols=225 Identities=51% Similarity=0.857 Sum_probs=206.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 23599999999999999999999999999999999999999999999999998877777888899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+|++|++++|+.|++||+.++.+....+++.+++...++.++++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998765555666777777778888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999998877899999999999988899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=392.00 Aligned_cols=233 Identities=64% Similarity=1.011 Sum_probs=208.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|+++.|++..++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999987777777778899
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++.+++.|++||+.++.+....+++...+...++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987654455556666666677788899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHH
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 489 (1139)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++......++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAK 233 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHH
Confidence 9999999999999999999999887678999999999999888999999999999999999888765444443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=392.17 Aligned_cols=235 Identities=61% Similarity=0.975 Sum_probs=212.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++..+.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|+||+|.+|+.|+++|+.++.+....+++.+.++..++.+++..+|.|+++.+.....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999986554556778888888999999999999999999988899999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g 1125 (1139)
|||||||++||+.+.+.+.+.|++.. . ++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~---------~-g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM---------K-GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc---------C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-Ch
Confidence 99999999999999999999998753 3 3459999999999988999999999999999999999875 55
Q ss_pred hHHHHH
Q 048639 1126 VYSRLY 1131 (1139)
Q Consensus 1126 ~f~~l~ 1131 (1139)
.++.++
T Consensus 230 ~~~~~~ 235 (238)
T cd03249 230 VYAKLV 235 (238)
T ss_pred hHHHHh
Confidence 555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=384.20 Aligned_cols=216 Identities=29% Similarity=0.509 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.++++|++|+|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999963 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccc-ccccccHHHHhccCCC---------c-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEP-LLFSCSIRNNICYGNE---------A-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp-~LF~gTIreNL~~~~~---------~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+||||++ .-|.-|++|=+.+|.- . .+++.+.+|++.+++.++.++. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 5567799998887742 1 1233588899999999887542 2 36999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh-cCCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI-NSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~-~~DrI~vl~~G~ive 1112 (1139)
.|||||.++|+||+||||||+||....-.|++.+++... .++.|+|++.|+++... .||++++|++|+++.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~--------~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR--------EKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999999998751 23456999999998765 599999999999999
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
+|+|+|.+..
T Consensus 220 ~G~p~evlT~ 229 (258)
T COG1120 220 QGTPEEVLTE 229 (258)
T ss_pred ecCcchhcCH
Confidence 9999999864
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=393.49 Aligned_cols=239 Identities=32% Similarity=0.556 Sum_probs=214.9
Q ss_pred CCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 252 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
...+.|+++|++++|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 345689999999999742 2469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++.|+|++|+|++|++|++||+.+... ...+++.++....++.+.+..+|.|+++.+++.+.+||||||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2345566777777888889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHH
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRL 490 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 490 (1139)
++|+++||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.++.+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999999887778999999999999988999999999999999999998765 3556666
Q ss_pred Hh
Q 048639 491 FT 492 (1139)
Q Consensus 491 ~~ 492 (1139)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=354.46 Aligned_cols=209 Identities=33% Similarity=0.511 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 962 (1139)
|+|+||+.+|++. .++|+||||+|++||.+-++|||||||||++++|++...|+.|+|.++|.|++.+.-+ -||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999864 5699999999999999999999999999999999999999999999999999888655 5899
Q ss_pred hceEEccccccc-cccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLF-SCSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF-~gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+||+|+||--|. +-|+.||+++.-. ..-.+++.++|+.+||.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999766 5699999987532 1224578899999999999999984 799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC-CEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~-DrI~vl~~G~ive~G 1114 (1139)
|||++.+|++||-||||.+||+++...|++.+++.. ..+|||++.||+.+.+..+ -|++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein---------r~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN---------RLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh---------hcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999875 5678899999999999884 689999999999876
Q ss_pred Ch
Q 048639 1115 SH 1116 (1139)
Q Consensus 1115 ~~ 1116 (1139)
.+
T Consensus 220 ~~ 221 (223)
T COG2884 220 SR 221 (223)
T ss_pred cc
Confidence 54
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=388.73 Aligned_cols=227 Identities=49% Similarity=0.856 Sum_probs=209.6
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|.|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46899999999963 2359999999999999999999999999999999999999999999999999988888889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++|+||++.+|.+|+++|+.++.+...++++.++++..++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999875555667888899999999999999999999999889999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
++|||||||++||+.+.+.+.+.|++.. . ++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM---------K-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc---------C-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999998763 3 4569999999999988999999999999999999988764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=382.74 Aligned_cols=219 Identities=33% Similarity=0.596 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC-CCCHHHHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK-DLDLKSLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~ 334 (1139)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++++|+++|++|.|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999864 57999999999999999999999999999999999999999999999999988 4788899999
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEP--SLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+|||+|+| .+|..||.|.+.||..+ .+.+++.+... +.++.. |+.......+.+||||||||+|||.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~-----~~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-----EALELV--GLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH-----HHHHHc--CchhhccCCccccCCcceeeHHhhHHH
Confidence 99999999 78999999999999653 33333333222 222322 333345567789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
..+|++||||||||+||+...+.+.+.++++.+ ++|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999864 5899999999999977 999999999999999999888754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=369.21 Aligned_cols=218 Identities=32% Similarity=0.478 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC-CHHHHhc
Q 048639 256 NIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-DLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~-~~~~~~~ 333 (1139)
.++++|+++.|+... ..++|+||||+|.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997531 12599999999999999999999999999999999999999999999999877554 3346778
Q ss_pred ceEEEecCCC--CCc-ccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 334 NIGAVSQEPS--LFT-GSLMDNIKVGNM----DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 334 ~i~~v~Q~~~--l~~-~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
.|-+|||||. |-+ .||++-|.-+.. +...+++.++++..++ |. .....++.+|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL-------~~---~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL-------PP---SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC-------CH---HHHhcCchhcChhHHHHHHH
Confidence 9999999996 333 377776653221 1122333344433332 11 23455677899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||..+|++||||||||+||+..+..|++.+.++.+ +.|.|+|||++..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999988765 5699999999999987 999999999999999999998765
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=396.37 Aligned_cols=220 Identities=33% Similarity=0.575 Sum_probs=198.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+.+|.+. .+|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|+.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999998876 789
Q ss_pred eEEccccccccc-cHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
++|+|+..||+. |+++||.|+... .-++++.++++..++.+.+++.| .+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999987431 23567899999999999988877 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+|+|++++||||.|+||++....+...|+++.. .-++|+|.|||+....+. +|||+||++|+|.+.|+|
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~--------~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p 218 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE--------RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTP 218 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH--------hcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCCh
Confidence 99999999999999999999999999988887641 224569999999998886 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
.|+.+++...|-
T Consensus 219 ~ely~~P~n~fV 230 (338)
T COG3839 219 LELYERPANLFV 230 (338)
T ss_pred HHHhhCccchhh
Confidence 999998877663
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=382.69 Aligned_cols=217 Identities=37% Similarity=0.652 Sum_probs=196.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC-CCChHHHhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK-EYNLRRLRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~-~~~l~~lR~~ 963 (1139)
.|+++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999765 57999999999999999999999999999999999999999999999999998 4889999999
Q ss_pred ceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+|+|+|+| .+|..||.+.+++|.. ..+ ++++.++++.+++.++.++.| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 8999999999999843 223 345788999999988855544 5799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|.+|..+|++||||||||+||+...+.+.+.++++.. .++.|+|+|||+++.+.. |||++||++|+++.+|
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~--------~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g 221 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE--------EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADG 221 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh--------cCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999998751 223569999999999998 9999999999999999
Q ss_pred ChhHHhhc
Q 048639 1115 SHSTLVAE 1122 (1139)
Q Consensus 1115 ~~~eLl~~ 1122 (1139)
+|+++.++
T Consensus 222 ~p~~i~~~ 229 (235)
T COG1122 222 DPAEIFND 229 (235)
T ss_pred CHHHHhhh
Confidence 99999875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=376.59 Aligned_cols=210 Identities=29% Similarity=0.503 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|.++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999642 59999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEEecCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHH
Q 048639 336 GAVSQEP---SLFTGSLMDNIKVGNMDA----------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 336 ~~v~Q~~---~l~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkq 402 (1139)
|||||.. |-|+.||+|-+.+|.... +.+++.++++.+++.++ ......+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHH
Confidence 9999965 668899999999985422 13556666666655543 33445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||++.+.. +|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999998865 8999999999999875 99999996 568899999998
Q ss_pred hcc
Q 048639 481 LQT 483 (1139)
Q Consensus 481 ~~~ 483 (1139)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=383.12 Aligned_cols=219 Identities=35% Similarity=0.608 Sum_probs=202.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 58999999999743 34699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+|++|++.+++.|++||+.+... ...+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987643 45677788888888888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
++||||||++||+.++..+.+.++++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877899999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=405.08 Aligned_cols=228 Identities=29% Similarity=0.521 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998876544 57
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++|+|+||++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 699999998532 122222211 122344444 45555667788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc--
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS-- 484 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~-- 484 (1139)
|+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999998753 7999999999999976 9999999999999999999997542
Q ss_pred hHHHHHH
Q 048639 485 DFYNRLF 491 (1139)
Q Consensus 485 ~~~~~~~ 491 (1139)
...+.++
T Consensus 235 ~~~~~~~ 241 (343)
T TIGR02314 235 PLAQKFI 241 (343)
T ss_pred HHHHHHH
Confidence 3344444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=382.85 Aligned_cols=220 Identities=43% Similarity=0.727 Sum_probs=201.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|+|+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++|+||+|.+|..|++||+.++.+..+++++.++++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998764444566788899999999999999999999999888999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEec
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1114 (1139)
++|||||||++||+++...+.+.|++.. .+ +|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLL---------GD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc---------CC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999764 33 5699999999988779999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=360.89 Aligned_cols=226 Identities=30% Similarity=0.504 Sum_probs=196.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 961 (1139)
.|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999953 4699999999999999999999999999999999999999999999999999988765 569
Q ss_pred hhceEEccccccccc-cHHHHhccCCC---cCCHHHHH----HHHHHcCchHH-HhhCCCCccccccCCCCCCChHHHHH
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGNE---AASEAEIV----EVSKKANIHDF-ISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~~---~~sd~ei~----~al~~~~l~~~-i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
+++|+++|..-||+. ||+||+.+.-. ..+++++. ..|+.|||..- .+..| +.||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999964 99999987432 33444443 45677888766 33344 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
+|||||+.-+|+||++|||||+|||-+...+-+.|+++.. .-+.|+++|||+++++.. ||||+++.+|+|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~--------~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELND--------ALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHH--------hhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 9999999999999999999999999999999999887751 234569999999999987 8999999999999
Q ss_pred EecChhHHhhccCChHHHHHH
Q 048639 1112 EMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
..|+++|+.+..+.+.+++++
T Consensus 226 ~~Gt~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 226 AEGTPEELLASDDPWVRQFFN 246 (263)
T ss_pred EeCCHHHHHhCCCHHHHHHhc
Confidence 999999999876666666654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=362.40 Aligned_cols=224 Identities=34% Similarity=0.541 Sum_probs=194.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHHHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR 961 (1139)
.|+++||+.+||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++..+. ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999887 66788
Q ss_pred hhceEEcccccccc-ccHHHHhccCCC--------------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNE--------------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~--------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
++||+|+|++-|-. -|+.+|+..|.- ..+.....++|+++|+.+.... ...+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 99999999998874 589999976531 1234467889999999887543 235799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
|||+||++|||||..+|+|++-|||||+|||.+.+.|++.|++.. ..++.|||+.-|.++..+. ||||+-|
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in--------~~~g~Tvi~nLH~vdlA~~Y~~Riigl 221 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDIN--------QEDGITVIVNLHQVDLAKKYADRIIGL 221 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHH--------HHcCCEEEEEechHHHHHHHHhhheEe
Confidence 999999999999999999999999999999999999999999874 1344569999999999876 9999999
Q ss_pred eCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1106 DKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
++|+|+-.|++.||-+ ..+.+.+.
T Consensus 222 ~~G~ivfDg~~~el~~---~~~~~iYg 245 (258)
T COG3638 222 KAGRIVFDGPASELTD---EALDEIYG 245 (258)
T ss_pred cCCcEEEeCChhhhhH---HHHHHHhc
Confidence 9999999999999643 34444443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=397.36 Aligned_cols=223 Identities=26% Similarity=0.469 Sum_probs=189.7
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC------
Q 048639 255 GNIDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL------ 326 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~------ 326 (1139)
..|+++|++|+|++.. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997421 24699999999999999999999999999999999999999999999999988642
Q ss_pred ----------CHHHHhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccc
Q 048639 327 ----------DLKSLRKNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQ 391 (1139)
Q Consensus 327 ----------~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~ 391 (1139)
+...+|++|+||+|+| ++|+.|++|||.++.. ..+.++..+ .+.+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 7899999999998742 223332211 223455665 554 45778
Q ss_pred cCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchh-ccCEEEEEeCc
Q 048639 392 RGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIV-NADMIAVVEDG 469 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G 469 (1139)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998764 5899999999999875 59999999999
Q ss_pred EEEEecChhhhhccc
Q 048639 470 QVTETGTHHSLLQTS 484 (1139)
Q Consensus 470 ~i~~~g~~~~l~~~~ 484 (1139)
++++.|+++++....
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999987654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=376.82 Aligned_cols=217 Identities=30% Similarity=0.494 Sum_probs=179.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc---cCCCCCHHHHh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL---NIKDLDLKSLR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~~ 332 (1139)
+|.++|+++.|+. .++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4789999999974 45999999999999999999999999999999999999999999999999 555533 334
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNMD----ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
++||+|+|+.-||. .||++||.||.+- .+..++ ...+.+.++-+ .++-.-...+.+||||||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~-----r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI-----RARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhH-----HHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHH
Confidence 68999999999996 5999999999631 111111 11222222222 122223456789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|||..+|++||||||+++||++.++.+...|+++.. |.|+++||||.+++.. ||||++|++|+|...|+++|+...+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCC
Confidence 999999999999999999999999999999988753 8899999999999865 9999999999999999999997643
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=343.88 Aligned_cols=212 Identities=32% Similarity=0.544 Sum_probs=188.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|.+++|.|+|..-+ =.++++|++||++||+||||||||||++++.||..|.+|+|.|+|+|....++ .++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChh
Confidence 57899999996432 24789999999999999999999999999999999999999999999988776 456799
Q ss_pred EEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
+++||..||. -||++|+.+|.. ....+.+..++.++|+.++..++|. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999996 599999998842 1235679999999999999999984 699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+|+-|||+||||.|+||+.-++.+...+.... ++++. |+++|||.++.+.. +||++++|+|+|++.|+-+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~-------~E~~~-TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~ 215 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLC-------DERKM-TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQ 215 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHH-------HhhCC-EEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHH
Confidence 999999999999999999999999999988765 22344 59999999999887 9999999999999999999
Q ss_pred HHhhcc
Q 048639 1118 TLVAES 1123 (1139)
Q Consensus 1118 eLl~~~ 1123 (1139)
++++..
T Consensus 216 ~~~~~~ 221 (231)
T COG3840 216 ELLSGK 221 (231)
T ss_pred HHhccC
Confidence 999763
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=397.88 Aligned_cols=219 Identities=27% Similarity=0.462 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC-------
Q 048639 885 RIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY------- 955 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------- 955 (1139)
.|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhhhceEEcccc--ccccccHHHHhccCCC--cCCHHH----HHHHHHHcCchHHHhhCCCCccccc
Q 048639 956 ---------NLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNE--AASEAE----IVEVSKKANIHDFISSLPDGYDTVV 1018 (1139)
Q Consensus 956 ---------~l~~lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd~e----i~~al~~~~l~~~i~~lp~gldt~v 1018 (1139)
+...+|++++||+|+| .+|+.|+++|+.++.. ..++++ +.++++.+++.+ ...
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~ 170 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SYL 170 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hHh
Confidence 3567899999999998 6899999999987621 223333 334444444421 234
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh-
Q 048639 1019 GEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI- 1097 (1139)
Q Consensus 1019 ~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~- 1097 (1139)
.+.+.+||||||||++|||||+++|+||||||||++||+.++..+.+.|++.. .+++|||+|||+++.+.
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~---------~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK---------ANNKTVFVITHTMEHVLE 241 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHH
Confidence 55667899999999999999999999999999999999999999999998764 23456999999999885
Q ss_pred cCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1098 NSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1098 ~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
.||||+||++|++++.|+|+++.++
T Consensus 242 ~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 242 VADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 5999999999999999999987643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=379.51 Aligned_cols=219 Identities=43% Similarity=0.745 Sum_probs=198.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|+++.|++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24699999999999999999999999999999999999999999999999998777777778899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+|++|+++++..|++||+.++.+....+++.+.++..++.+.+...|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999988754445556677777778888889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEec
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 475 (1139)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999886668999999999988679999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=372.91 Aligned_cols=218 Identities=30% Similarity=0.541 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|.++ +||+||||+|++||.+||+||||||||||+++++|+.+|++|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 49999999999643 59999999999999999999999999999999999999999999999998776432 5789
Q ss_pred eEEcccc---ccccccHHHHhccCCCc----------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 965 GLVQQEP---LLFSCSIRNNICYGNEA----------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 965 ~~V~Qdp---~LF~gTIreNL~~~~~~----------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
|||||.. .-|+-||+|=+.+|... .+.+++.+||+++|+.++.++ ++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHH
Confidence 9999965 35788999999887321 134789999999999988643 455 49999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++. .+++||++|+|+++.+.. ||+|+.| |+++
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~---------~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~ 216 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR---------QEGKTVLMVTHDLGLVMAYFDRVICL-NRHL 216 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCcHHhHhhCCEEEEE-cCee
Confidence 9999999999999999999999999999999999999886 334569999999999987 9999999 5788
Q ss_pred EEecChhHHhhccCChHHHHH
Q 048639 1111 VEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~~l~ 1131 (1139)
...|+|++.+.. ..+.+.+
T Consensus 217 ~~~G~~~~~~~~--~~l~~~~ 235 (254)
T COG1121 217 IASGPPEEVLTE--ENLEKAF 235 (254)
T ss_pred EeccChhhccCH--HHHHHHh
Confidence 999999999864 3444444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=384.44 Aligned_cols=212 Identities=36% Similarity=0.576 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCccEEEECCcccCCCC--hH
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY-----DPNEGIILIDGKGIKEYN--LR 958 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-----~p~~G~I~idG~di~~~~--l~ 958 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhhhceEEccccccccccHHHHhccCCCc---C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNEA---A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~---~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+|++++|+||++.+|..|++||+.++... . .++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999864211 1 23567888888888766544321 3579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .+ +|+|++||+++.+.. ||+|++|++|++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK---------KE-YTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------hC-cEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999875 34 569999999999876 999999999999
Q ss_pred EEecChhHH
Q 048639 1111 VEMGSHSTL 1119 (1139)
Q Consensus 1111 ve~G~~~eL 1119 (1139)
++.|+++++
T Consensus 219 ~~~g~~~~~ 227 (227)
T cd03260 219 VEFGPTEQI 227 (227)
T ss_pred EEecCcccC
Confidence 999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=385.23 Aligned_cols=219 Identities=31% Similarity=0.504 Sum_probs=187.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh---HHHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL---RRLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 962 (1139)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 369999999999999999999999999999999999999999999999999987764 56788
Q ss_pred hceEEccccccccc-cHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
+++||||++.+|.. |+++|+.++.. ..+ ++++.++++..++.++..+. ..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLY-----------PAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHH
Confidence 99999999999986 99999986421 122 23466778888876554332 2479999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|+||||||||++||+.+.+.+.+.|++... ..++|||+|||+++.+.. ||||++|++|++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK--------ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999999999999999999999997640 124569999999999876 999999999999999
Q ss_pred cChhHHhhccCChH
Q 048639 1114 GSHSTLVAESQGVY 1127 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f 1127 (1139)
|+++++.+. ...|
T Consensus 219 g~~~~~~~~-~~~~ 231 (235)
T cd03261 219 GTPEELRAS-DDPL 231 (235)
T ss_pred cCHHHHcCC-CChh
Confidence 999999864 3444
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=365.10 Aligned_cols=208 Identities=34% Similarity=0.532 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHh
Q 048639 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 961 (1139)
++++||+..|..... .++|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++-+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 3699999999999999999999999999999999999999999999999999999854 344
Q ss_pred -hhceEEcccccccc-ccHHHHhccC----CCc--CCHHHHHHHHHHcCchHHHh-hCCCCccccccCCCCCCChHHHHH
Q 048639 962 -SQIGLVQQEPLLFS-CSIRNNICYG----NEA--ASEAEIVEVSKKANIHDFIS-SLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 962 -~~i~~V~Qdp~LF~-gTIreNL~~~----~~~--~sd~ei~~al~~~~l~~~i~-~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
++||+|+|+..|++ -|++||+.+. ... ..++.+.+.++.+|+.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 67999999998875 5999999842 111 12456777788888876554 333 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
+||||||+.+|+|++.||||++||.+|.+.|.+.+++... ..++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~--------~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK--------ERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999998741 33566999999999999999999999999543
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=379.90 Aligned_cols=473 Identities=20% Similarity=0.213 Sum_probs=355.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC---CChhHHHHHHHhcHHHHHHHHHH
Q 048639 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQ---NDAGSLTSRIVSDTSMVKAIISD 682 (1139)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~---~~~G~i~~r~~~D~~~i~~~~~~ 682 (1139)
.+.+|.+++.+.+.....+.|+-.....++-..|-+.+.++.+...-.|+.... +.+-..=.|+.+|+...-+....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 456677777777788888888888888888888888888888876644443211 11112346889998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Q 048639 683 RMSVIVQCISSILIATIVSL---------------VVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISL 747 (1139)
Q Consensus 683 ~l~~~~~~~~~~~~~~~~~~---------------~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (1139)
....++..+++++...++.. .+...+.+++++.+++.-++..+..+.+.++.-+..+.++.+...
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66666666666655544443 222333344444444444445566666667777777888888888
Q ss_pred HHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 048639 748 TSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIR 827 (1139)
Q Consensus 748 ~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 827 (1139)
+.-..++.+.|..|+.|+...++.....+.......+...+.....++......+..++-...++.....|.+++|+++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 88888999999999999988888777776666654444444433444444444444445555666667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCCCCCC--C---CCccccEEEEeEEEECCCCCC
Q 048639 828 AYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKT--EIEPDAPESSE--S---GRIKGRIEFQNIKFNYPSRPE 900 (1139)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~--~~~~~~~~~~~--~---~~~~g~I~~~nvsf~Y~~~~~ 900 (1139)
+...+.....+++.+...++.+..-.+...|+.++..... +.+...+.... . ......|+|+|++..-|+.
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 9999999999999999999999999999999988764221 10111010000 0 0013679999999998753
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
.+.|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|..-. -..+-|+||.|.+-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 4789999999999999999999999999999999999999999986641 12478999999999999999
Q ss_pred HhccCCCc--CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHH
Q 048639 981 NICYGNEA--ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058 (1139)
Q Consensus 981 NL~~~~~~--~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~ 1058 (1139)
=|+|.+.. .+|+++.++|.+|+|.++++++.+ .+. =..-||+||||||++||.||++|++++||||||+||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99997653 899999999999999999998743 222 34569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEe
Q 048639 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMD 1106 (1139)
Q Consensus 1059 te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~ 1106 (1139)
+|..+.+.+++.. .+. |+|.|+||.......++.+-++
T Consensus 550 ~e~~l~q~l~~~l---------p~~-tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEEL---------PDA-TVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhC---------CCC-EEEEeccchhhHHHHhhheeec
Confidence 9999999999754 344 5999999988777777766554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=382.39 Aligned_cols=217 Identities=30% Similarity=0.531 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 333 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999877654 56788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
.|+||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999886 99999987632 122222221 122334444 44445566778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7899999999999876 999999999999999999888654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=379.55 Aligned_cols=219 Identities=49% Similarity=0.787 Sum_probs=195.8
Q ss_pred CCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 332 (1139)
..+.++++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753234699999999999999999999999999999999999999999999999998777777778
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+.++|++|++.+|+.|++||+.++.......++.+......+.++++.+|.|+++.+.+++.+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998754444444445555566778899999899988999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEE
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQV 471 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 471 (1139)
+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999977999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=390.58 Aligned_cols=219 Identities=32% Similarity=0.559 Sum_probs=191.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642224599999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+||+|+| .++..|+++||.++.. ..+ ++++.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4667899999987521 122 356788899999987765543 47999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+||||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+..||||++|++|++++.|++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--------~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~ 224 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD--------DYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTP 224 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999987641 224569999999999978999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.++
T Consensus 225 ~~~~~~ 230 (279)
T PRK13650 225 RELFSR 230 (279)
T ss_pred HHHHcC
Confidence 998764
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=378.95 Aligned_cols=219 Identities=52% Similarity=0.845 Sum_probs=198.1
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..|.|+++|++++|+++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999753234699999999999999999999999999999999999999999999999999888877888
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++++|+||+|.+|++|+++|+.++.......++++..+..++++++..+|.|+++.+.+...+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654444556667777788899999999899998999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
+|++|||||||++||+++.+.+.+.|++.. .+ +|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWP---------ER-RTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHc---------CC-CEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999764 33 569999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=363.72 Aligned_cols=199 Identities=34% Similarity=0.560 Sum_probs=176.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.+++++|+.+|+. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999964 5799999999999999999999999999999999999999999999999988543 4579
Q ss_pred eEEcccccccc-ccHHHHhccCCCcC------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNEAA------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~~~------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.||+ -|+++|+.++.... ..+.+.+.++.+||.+|-+..| .+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 59999999875321 2456889999999999988777 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEE
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEV 1110 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~i 1110 (1139)
||+.+|+||+||||.+|||+.|...+|+-+.+.. + ..++||++|||+++.... +|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw-------~-~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLW-------E-ETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH-------H-hhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998764 1 334569999999998776 999999999 545
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=380.25 Aligned_cols=225 Identities=34% Similarity=0.569 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEccccccccccHHHHhccCCC--cCCHHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 965 GLVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~~--~~sd~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+|+||+|.+|+.|+++|+.++.. ...++++.+.++..++. ++.. .....||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 12245677778887774 3322 2345799999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+|++|||||||++||+++.+.+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKN--------KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 9999999999999999999999999987640 124569999999999876 9999999999999999999998
Q ss_pred hccCChHHHHH
Q 048639 1121 AESQGVYSRLY 1131 (1139)
Q Consensus 1121 ~~~~g~f~~l~ 1131 (1139)
..+...|.+.+
T Consensus 221 ~~~~~~~~~~~ 231 (241)
T PRK14250 221 TNPQNEVTKLF 231 (241)
T ss_pred cCCCcHHHHHH
Confidence 76444565544
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=399.33 Aligned_cols=221 Identities=28% Similarity=0.508 Sum_probs=193.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+. +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++..++.. ++++
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24699999999999999999999999999999999999999999999999999887754 4789
Q ss_pred eEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|. .|+++|+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999987632 112 346788899999988776655 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|+|||||||||+||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+|
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~ 219 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR--------RLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCH
Confidence 99999999999999999999999999999987641 224569999999998875 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++.+++...|.
T Consensus 220 ~~~~~~p~~~~~ 231 (356)
T PRK11650 220 VEVYEKPASTFV 231 (356)
T ss_pred HHHHhCCccHHH
Confidence 999987665553
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=398.57 Aligned_cols=220 Identities=32% Similarity=0.546 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .++++
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 468999999999999999999999999999999999999999999999999987764 36789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.+|.. |++||+.++.. .. .++++.++++.+++.++.++.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999998632 11 2457788899999977655443 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|+|||||||||+||+.+.+.+++.|+++.. ..++|+|+|||+++.+.. ||||+||++|+|++.|+|
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~ 221 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--------QFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSP 221 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999987641 224569999999999866 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++.+++...|.
T Consensus 222 ~~~~~~p~~~~~ 233 (351)
T PRK11432 222 QELYRQPASRFM 233 (351)
T ss_pred HHHHhCCCchHH
Confidence 999987766553
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=398.52 Aligned_cols=224 Identities=33% Similarity=0.517 Sum_probs=190.3
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hhceEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++++||||++.+|. .|+++|+.++.. ..+ ++++.++++..++.++..+. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999886 799999986421 122 24567778888876654432 3579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|+||||||||++||+.+.+.+++.|++... ..++|+|++||+++.+.. ||||++|++|++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~--------~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINR--------ELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999997641 224569999999999876 999999999999999
Q ss_pred cChhHHhhccCChHH
Q 048639 1114 GSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f~ 1128 (1139)
|++++++.++...+.
T Consensus 223 g~~~~~~~~~~~~~~ 237 (343)
T PRK11153 223 GTVSEVFSHPKHPLT 237 (343)
T ss_pred cCHHHHHhCCCcHHH
Confidence 999999876444443
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=351.43 Aligned_cols=474 Identities=19% Similarity=0.230 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHH
Q 048639 606 YSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMS 685 (1139)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~ 685 (1139)
+...++++..+.++.+.+.......++++...++|.++.++++..|+.-++ +-..++++.++++|+..+. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhH
Confidence 334444555555556666777788899999999999999999999999999 5678999999999999999 5556778
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchH
Q 048639 686 VIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEE 765 (1139)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~ 765 (1139)
.+.++++.++++.+...+.++.+.++.++.+.+.++..++......+..+..++.+.++..+.+-.++|.+..+......
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 88999999999999999999999888888777777777766666666566777788889999999999999998775444
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 048639 766 NILQ--KAKISLEKTKRSSRKESIKYGV----IQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSI 839 (1139)
Q Consensus 766 ~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1139)
+... .+...-+... +....... ...+.+.+.+....+.+|+...... .+........+.+.+.-.++
T Consensus 207 ~~~h~~~~~~~a~~~r----~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL 279 (546)
T COG4615 207 EYVHNNLYIPDAQEYR----HHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPL 279 (546)
T ss_pred HHHHhhhcCcchHHHH----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHH
Confidence 3322 2221111111 11111111 1222333333444444555433322 22223333344455566789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEE
Q 048639 840 TELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919 (1139)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaI 919 (1139)
.++...+|.+..+..+.+++.++...++..+-..++ +.|.- ..|+++||.|+|+.. .--+..||++|++||.|-|
T Consensus 280 ~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q--~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFl 354 (546)
T COG4615 280 LSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQ--AFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFL 354 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCC--cCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEE
Confidence 999999999999999999999876533322211111 11111 359999999999742 2458899999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHH
Q 048639 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSK 999 (1139)
Q Consensus 920 vG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~ 999 (1139)
+|.|||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++- +...++.+.+..-++
T Consensus 355 iG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~-----~e~~as~q~i~~~Lq 429 (546)
T COG4615 355 IGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG-----PEGKASPQLIEKWLQ 429 (546)
T ss_pred ECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-----CccCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986541 112367777777777
Q ss_pred HcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccc
Q 048639 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE 1079 (1139)
Q Consensus 1000 ~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~ 1079 (1139)
+-.+.... ++.+|-=++ ..||-|||.|+|+--|++-+.+|+++||=-+--||.=++...+.+--..+
T Consensus 430 rLel~~kt-sl~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK------- 496 (546)
T COG4615 430 RLELAHKT-SLNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK------- 496 (546)
T ss_pred HHHHhhhh-cccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH-------
Confidence 76554432 233332222 36999999999999999999999999999999999999998887654321
Q ss_pred cCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEe
Q 048639 1080 LASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1080 ~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1113 (1139)
..++||+.|||+-.--..+||++.|++|+++|.
T Consensus 497 -~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 497 -EQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred -HhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 234559999999999999999999999999986
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=380.41 Aligned_cols=223 Identities=32% Similarity=0.496 Sum_probs=193.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCcccCCCChHHHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD---PNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~lR 961 (1139)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 369999999999999999999999999999999999985 6899999999999988888889
Q ss_pred hhceEEccccccccccHHHHhccCCC--------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNE--------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~--------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++++|+||+|.+|..|+++|+.++.. ...++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999986521 11234577888999887665432 2345578999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|++|||||||++||+.+...+.+.|++.. . ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS---------H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---------C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 99999999999999999999999999999999998764 3 4569999999998875 99999999999999
Q ss_pred ecChhHHhhccCChH
Q 048639 1113 MGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f 1127 (1139)
.|+++++...+...+
T Consensus 222 ~g~~~~~~~~~~~~~ 236 (246)
T PRK14269 222 FGESKEFFENPKQEK 236 (246)
T ss_pred ECCHHHHHhCCCcHH
Confidence 999999986543333
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=389.22 Aligned_cols=221 Identities=32% Similarity=0.548 Sum_probs=198.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
..|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999995 45799999999999999999999999999999999999999999999999999998875 578
Q ss_pred ceEEcccccccc-ccHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
|++|+|+.-||+ -||++|+.||.. ... ++++.++++.+++.++-.+.| ..|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999995 699999999854 112 247899999999999877766 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||..+|++|+||||-|+||.+-...++.-+++... +-+.|.|+|||+-+.... +|||+||.+|+|...|
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~--------~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~g 219 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR--------ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH--------hcCCeEEEEECCHHHHhhhccceEEccCCceeecC
Confidence 9999999999999999999999999999999987651 235679999999988765 9999999999999999
Q ss_pred ChhHHhhccCChHH
Q 048639 1115 SHSTLVAESQGVYS 1128 (1139)
Q Consensus 1115 ~~~eLl~~~~g~f~ 1128 (1139)
+|+|+..+|...|-
T Consensus 220 tP~eiY~~P~~~fV 233 (352)
T COG3842 220 TPEEIYERPATRFV 233 (352)
T ss_pred CHHHHhhCcchHHH
Confidence 99999998877774
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=397.17 Aligned_cols=217 Identities=28% Similarity=0.476 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999942 24699999999999999999999999999999999999999999999999999877654 4789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+|+ .||+|||.|+... .+..+..+ .+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999987431 12222211 122334444 44455566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999988653 7899999999998865 999999999999999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=388.56 Aligned_cols=217 Identities=33% Similarity=0.546 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC--hHHHh
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN--LRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--l~~lR 961 (1139)
|+++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hhceEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCch--HHHhhCCCCccccccCCCCCCChHHHH
Q 048639 962 SQIGLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIH--DFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 962 ~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
++++||||+| .+|+.|+++|+.++.. ..++ +++.++++.+++. ++ .......|||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~q 151 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQKR 151 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHHH
Confidence 9999999998 5788999999986521 1232 3567788888875 22 22334679999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.. ..++|||+|||+++.+.. ||||++|++|++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK--------EYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999987641 224569999999999865 999999999999
Q ss_pred EEecChhHHhh
Q 048639 1111 VEMGSHSTLVA 1121 (1139)
Q Consensus 1111 ve~G~~~eLl~ 1121 (1139)
++.|+++++++
T Consensus 224 ~~~g~~~~~~~ 234 (287)
T PRK13637 224 ELQGTPREVFK 234 (287)
T ss_pred EEECCHHHHHh
Confidence 99999999875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=397.23 Aligned_cols=220 Identities=30% Similarity=0.493 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.. ++++
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999877653 6789
Q ss_pred eEEcccccccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.+|. .|+++|+.++.. .. .++++.++++..++.++.++.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 699999997632 11 2356788888888877655443 579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++|+||||||+||..+.+.+.+.|++... ..++|+|+|||+++.+.. ||||++|++|++++.|+|
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~--------~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~ 219 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--------RLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTP 219 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999987641 224569999999999866 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++.+++...|.
T Consensus 220 ~~~~~~p~~~~~ 231 (353)
T TIGR03265 220 QEIYRHPATPFV 231 (353)
T ss_pred HHHHhCCCCHHH
Confidence 999988766653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=385.47 Aligned_cols=214 Identities=33% Similarity=0.562 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 23699999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEcccc--ccccccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEP--LLFSCSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp--~LF~gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+| .+|..|+++|+.++.. .. .++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6788999999987521 11 2356788899999987765554 36999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|++|||||||++||+.+...+.+.|++.. ..++|+|++||+++.+.. ||||++|++|++++.|+
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH---------NQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999764 234569999999999865 99999999999999999
Q ss_pred hhHHh
Q 048639 1116 HSTLV 1120 (1139)
Q Consensus 1116 ~~eLl 1120 (1139)
++++.
T Consensus 222 ~~~~~ 226 (274)
T PRK13647 222 KSLLT 226 (274)
T ss_pred HHHhc
Confidence 87653
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=377.12 Aligned_cols=214 Identities=36% Similarity=0.622 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc-----CCCccEEEECCccCCCCC--HH
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY-----DPSNGDILIDSLNIKDLD--LK 329 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 329 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 36999999999999999999999999999999999999 999999999999987765 55
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCC--CH-HHHHHHHHHhcHHHHHHhCCCCCCcccccc--CCCCChHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA--DD-EQIYNASMMANAHSFISQLPDQYSTELGQR--GVQLSGGQKQRI 404 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~~-~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~--g~~LSgGqkqRi 404 (1139)
.++++++|++|++.+|+.|++||+.++.... .. ++.. ..+.+.++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHH-----HHHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6788999999999999789999998753211 11 1111 1112334433 333333334 589999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+.+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999987655899999999999875 999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=393.52 Aligned_cols=216 Identities=29% Similarity=0.494 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+||+|++.+|+. |++|||.|+.. ....++..+ .+.+.++.+ |+.......+.+|||||||||||||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 99999998743 122222211 122333333 34444566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988754 7999999999999865 999999999999999999998754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=384.88 Aligned_cols=222 Identities=28% Similarity=0.485 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+||+|+|. ++..|++|||.++... .+.++..+. +.+.++.+ |++......+.+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 5567999999987421 222222111 12234443 3444456667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
.+|++|||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999988753 89999999999998779999999999999999999886543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=378.34 Aligned_cols=221 Identities=27% Similarity=0.512 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcce
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 335 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 459999999999999999999999999999999999999999999999999887766544 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDADDEQI-------YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+|+||++.+|+. |++||+.++........+ ........+.+.++.+ |++...+..+.+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999876421110000 0011122334556666 566667788899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|||+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998865 58999999999999876 99999999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=387.05 Aligned_cols=218 Identities=29% Similarity=0.502 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChHH
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~ 959 (1139)
|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 23699999999999999999999999999999999999999999999999998653 3467
Q ss_pred HhhhceEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHHH
Q 048639 960 LRSQIGLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 960 lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+|++++||||+| .+|..|+++|+.++.. ..+. +++.++++.+++. +. ....+.+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV-----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh-----------hhCCcccCCHHHH
Confidence 899999999998 5888999999987521 1232 3445556666553 22 2234568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.. +.++|||+|||+++.+.. ||||++|++|+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~--------~~g~tvl~vtH~~~~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT--------DENKTIILVSHDMNEVARYADEVIVMKEGS 223 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999997630 234679999999999865 99999999999
Q ss_pred EEEecChhHHhhc
Q 048639 1110 VVEMGSHSTLVAE 1122 (1139)
Q Consensus 1110 ive~G~~~eLl~~ 1122 (1139)
+++.|+++++.++
T Consensus 224 i~~~g~~~~~~~~ 236 (286)
T PRK13646 224 IVSQTSPKELFKD 236 (286)
T ss_pred EEEECCHHHHHhC
Confidence 9999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=383.11 Aligned_cols=220 Identities=30% Similarity=0.545 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC--HHHHh
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD--LKSLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~ 332 (1139)
|+++|++++|++.. .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999987643 35678
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC--ccccccCCCCChHHHHHHHH
Q 048639 333 KNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS--TELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 333 ~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~i~~~g~~LSgGqkqRi~l 406 (1139)
++||||||+| .+|+.|++|||.++.. ..+.++..+. +.+.++.+ |+. +.....+..||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5778899999998632 1233332222 22334444 343 45677789999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+.+|++|||||||++||+.++..+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999988753 7999999999999865 999999999999999999988654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=394.93 Aligned_cols=217 Identities=29% Similarity=0.486 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999999876654 5789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+||+|++.+|+ .|++||+.|+... .+..+. ...+++.++.+ |++......+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~-----~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV-----AERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999996 5999999987431 112221 12234455655 56666778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|+++|||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999988753 7899999999999865 9999999999999999999997653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=394.17 Aligned_cols=209 Identities=33% Similarity=0.529 Sum_probs=183.4
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----hhhceEEcccccccc-
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL----RSQIGLVQQEPLLFS- 975 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~~i~~V~Qdp~LF~- 975 (1139)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++..++...+ |++++||||++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEee
Q 048639 976 CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049 (1139)
Q Consensus 976 gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLD 1049 (1139)
.|+++|+.++.+ ....+++.++++.++|.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999987522 112456788899999877765544 479999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChHH
Q 048639 1050 EATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1050 EaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f~ 1128 (1139)
||||+||+.+.+.+++.+.+... ..++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~--------~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQA--------TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 99999999999999999987631 224469999999998765 999999999999999999999977544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=396.93 Aligned_cols=222 Identities=24% Similarity=0.458 Sum_probs=195.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccc-ccccHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLL-FSCSIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++|||++.+ |+.|+++|+.++.. ...++++.++++.+++.++.++. ..+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 999999987 67899999987531 12245688999999998765432 347999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|+||||||||++||+.+...+++.|+++. ++++|+|+++|+++.+.. ||||++|++|++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~---------~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV---------DDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH---------hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999874 334569999999999965 99999999999999
Q ss_pred ecChhHHhhccCChHHHHH
Q 048639 1113 MGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f~~l~ 1131 (1139)
.|+|++++.. ....+++
T Consensus 220 ~G~~~ev~~~--~~l~~~~ 236 (402)
T PRK09536 220 AGPPADVLTA--DTLRAAF 236 (402)
T ss_pred ecCHHHHhCc--HHHHHHh
Confidence 9999999853 3444444
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=386.55 Aligned_cols=217 Identities=27% Similarity=0.517 Sum_probs=185.3
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC----CChHH
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE----YNLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~l~~ 959 (1139)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhhceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHHH
Q 048639 960 LRSQIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 960 lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+|++++||+|+| .+|..|+.+|+.++.. ..+ ++++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 7899999999987532 122 23466777787874 3332 23457999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+.+|+||||||||++||+.+...+.+.|+++. +.++|||+|||+++.+.. ||||++|++|+
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~---------~~g~til~vtHd~~~~~~~~dri~~l~~G~ 221 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH---------QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998764 334569999999998865 99999999999
Q ss_pred EEEecChhHHhhc
Q 048639 1110 VVEMGSHSTLVAE 1122 (1139)
Q Consensus 1110 ive~G~~~eLl~~ 1122 (1139)
+++.|+++++..+
T Consensus 222 i~~~g~~~~~~~~ 234 (288)
T PRK13643 222 IISCGTPSDVFQE 234 (288)
T ss_pred EEEECCHHHHHcC
Confidence 9999999998753
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=373.58 Aligned_cols=204 Identities=32% Similarity=0.539 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 962 (1139)
|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23699999999999999999999999999999999999999999999999998776543 4788
Q ss_pred hceEEcccccccc-ccHHHHhccCC------CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGN------EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~------~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+++|+||+|.+|. .|++||+.++. +...++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 59999998641 1123456888899999877665443 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
||||+++|+||||||||++||+++.+.+.+.|++.. +.++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFN---------RRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998764 334569999999999976 999999999975
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=393.50 Aligned_cols=219 Identities=32% Similarity=0.527 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred eEEcccccccc-ccHHHHhccCCC------cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE------AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~------~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+||+|++.+|. .|+++|+.++.. ..+ ++++.++++.+++.++.++.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999997 599999987632 112 346778888888876655443 47999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|++||||||||+||+.+...+.+.|++... ..++|+|+|||+++.+.. ||||++|++|+|++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~--------~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE--------ELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997641 224569999999999876 99999999999999
Q ss_pred ecChhHHhhccCChH
Q 048639 1113 MGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f 1127 (1139)
.|+|+++++++...|
T Consensus 218 ~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 218 AGTPDQVWREPATRF 232 (353)
T ss_pred EcCHHHHHhCccchH
Confidence 999999998765544
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=392.97 Aligned_cols=220 Identities=34% Similarity=0.567 Sum_probs=187.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
|+++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 356999999999999999999999999999999999999999999999999998776543 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++|+||+|++.+|. .|++||+.++.. ..+.++.. ..+.+.++.+ |++......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999986 599999987532 12222221 1223445555 55555677788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988743 7899999999999876 999999999999999999998754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=377.00 Aligned_cols=215 Identities=31% Similarity=0.524 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEcccccccc-ccHHHHhccCCCc--C----C----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNEA--A----S----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~~--~----s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
|+||+|.+|. .|+++|+.++... . . ++++.++++..++.++..+. ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999885 6999999865211 1 1 23466777888776554432 3579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|++|||||||++||+++.+.+.+.|++... ..++|||++||+++.+.. ||+|++|++|++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--------~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--------ELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999999999999999999999987640 224569999999998765 999999999999999
Q ss_pred cChhHHhhccC
Q 048639 1114 GSHSTLVAESQ 1124 (1139)
Q Consensus 1114 G~~~eLl~~~~ 1124 (1139)
|+++++.+.++
T Consensus 219 ~~~~~~~~~~~ 229 (239)
T cd03296 219 GTPDEVYDHPA 229 (239)
T ss_pred cCHHHHhcCCC
Confidence 99999986533
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=394.42 Aligned_cols=205 Identities=30% Similarity=0.494 Sum_probs=178.1
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----hcceEEEecCCCCCcc
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL----RKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~ 347 (1139)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 459999999999999999999999999999999999999999999999999999888777 7899999999999975
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 048639 348 -SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424 (1139)
Q Consensus 348 -ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts 424 (1139)
||+|||.++... .+.++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+|||||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986431 12222211 122344444 55566778888999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 425 ALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 425 ~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+||+.+++.+++.+.++. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999998874 38999999999998765 999999999999999999999765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=383.10 Aligned_cols=218 Identities=32% Similarity=0.567 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 34699999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+| .+++.|+++||.++.. ..+ ++++.++++.+++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 5667899999987521 112 345788888899988776654 37999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+.+|+||||||||++||+.+...+.+.|++... ..++|+|++||+++.+..||||++|++|++++.|++
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--------~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE--------QKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999997641 224669999999999988999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.+.
T Consensus 225 ~~~~~~ 230 (279)
T PRK13635 225 EEIFKS 230 (279)
T ss_pred HHHhcC
Confidence 998753
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=365.46 Aligned_cols=204 Identities=40% Similarity=0.631 Sum_probs=181.5
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999642 236999999999999999999999999999999999999999999999999998888888899
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++||||+|.+|++|+++|+.+.. ..+++++.++++ +.+....|||||+||++||||++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999998754 345555555544 2345678999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|++|||||||++||+++.+.+.+.|++.. . ++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEF---------T-NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999764 3 3569999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=383.62 Aligned_cols=220 Identities=27% Similarity=0.499 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC----CCHHH
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD----LDLKS 330 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 330 (1139)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999853 33556
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHH
Q 048639 331 LRKNIGAVSQEP--SLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 331 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~ 405 (1139)
+++.++||+|+| .+|..|+.||+.|+... .+.++... .+.+.++.+ |+. ......+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78889999999987432 22222221 122344444 342 2456778899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++++|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998875 48999999999998865 999999999999999999998654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=351.43 Aligned_cols=433 Identities=19% Similarity=0.232 Sum_probs=320.9
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+.-|+..+++- ++++++.++++|+..|. +-...++.+.++.+.++++...+.|+++++.++..+.+.+..+...+...
T Consensus 92 l~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~ 169 (546)
T COG4615 92 LDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMA 169 (546)
T ss_pred hcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999985 89999999999999998 44455788999999999999999999999877777777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSE--IKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWAL 178 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1139)
+..+.....++..+++.+..+..+.|.|..+...--.+. .+.|....+...+..............+.+.+.+....+
T Consensus 170 rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGl 249 (546)
T COG4615 170 RVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGL 249 (546)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888989999999999999999999999999987543322 222322222222211111111111122222222223333
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEE
Q 048639 179 IIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNID 258 (1139)
Q Consensus 179 ~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~ 258 (1139)
++|+.... +.-+.....++.+.++++..|+.++...++.+..+.+++++|.++-..++...... +...++ -..|+
T Consensus 250 vf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~-~q~~p~-~~~le 324 (546)
T COG4615 250 VFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR-PQAFPD-WKTLE 324 (546)
T ss_pred HHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC-CCcCCc-cccee
Confidence 33332211 22222344445566677788999999999999999999999998755433221111 111122 23699
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 259 IRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 259 ~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
++||.|.|+.. ..-+..||++|++||+|-|+|.|||||||++++|.|+|.|++|+|++||++++.-++++.|+-++-|
T Consensus 325 lrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSav 402 (546)
T COG4615 325 LRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402 (546)
T ss_pred eeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHH
Confidence 99999999743 3578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 339 SQEPSLFTGSLMDNIKVGNMD-ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 339 ~Q~~~l~~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
+-|.|||+.++ |.+. ++.+.+..-+..-.+... ..+.+|- =....||-|||.|+|+--|++-+.||+
T Consensus 403 FsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~k-tsl~d~~-----fs~~kLStGQkKRlAll~AllEeR~Il 470 (546)
T COG4615 403 FSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHK-TSLNDGR-----FSNLKLSTGQKKRLALLLALLEERDIL 470 (546)
T ss_pred hhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhh-hcccCCc-----ccccccccchHHHHHHHHHHHhhCCeE
Confidence 99999998654 2222 444444333322221111 1122211 012479999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 418 LLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 418 llDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
+|||=-+--||.=++.+.+.+.... .||||+.||||-.....|||++.|++|+++|.
T Consensus 471 v~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred EeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999888775533 49999999999999999999999999999875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=377.41 Aligned_cols=214 Identities=36% Similarity=0.565 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHHHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR~ 962 (1139)
|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 146999999999999999999999999999999999999999999999999998876 456788
Q ss_pred hceEEcccccccc-ccHHHHhccCCC--------------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNE--------------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~--------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+++|+||++.+|. .|+++|+.++.. ...++++.++++..++.+... ..+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-----------QRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-----------CCcccCCH
Confidence 9999999998886 699999976421 112345667777777755432 33467999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|+||||||||++||+.+...+.+.|++... +.++|+|+|||+++.+.. ||+|++|+
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~tH~~~~~~~~~d~v~~l~ 219 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR--------EEGITVIVSLHQVDLAREYADRIVGLK 219 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999997640 224569999999999985 99999999
Q ss_pred CCEEEEecChhHHh
Q 048639 1107 KGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl 1120 (1139)
+|++++.|+++++.
T Consensus 220 ~G~i~~~~~~~~~~ 233 (241)
T cd03256 220 DGRIVFDGPPAELT 233 (241)
T ss_pred CCEEEeecCHHHhh
Confidence 99999999999974
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=375.97 Aligned_cols=223 Identities=35% Similarity=0.525 Sum_probs=189.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCcccCCC--ChH
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-----EGIILIDGKGIKEY--NLR 958 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~~--~l~ 958 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 455
Q ss_pred HHhhhceEEccccccccccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+|++++|+||++.+|..|+++|+.++.. ...++++.++++.+++.+++.. .......+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCcccCCHHHHH
Confidence 67889999999999999999999986321 1123467788888888744321 122334579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+++|++|||||||++||+.+...+.+.|++.. ++ +|+|+|||+++.+.. ||+|++|++|++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK---------KK-YTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hc-CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999764 33 569999999999876 999999999999
Q ss_pred EEecChhHHhhccCChHH
Q 048639 1111 VEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~ 1128 (1139)
++.|+++++++++...+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~ 239 (247)
T TIGR00972 222 VEYGPTEQIFTNPKEKRT 239 (247)
T ss_pred EEeCCHHHHHhCCCChHH
Confidence 999999999865545443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=393.46 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=192.9
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc--cEEEECCcccCCCChHHH
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE--GIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~--G~I~idG~di~~~~l~~l 960 (1139)
.|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 367999999999963 369999999999999999999999999999999999999999 999999999987665 4
Q ss_pred hhhceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 961 RSQIGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+++++||+|++.+|.. |+++||.++.. ..+ ++++.++++.++|.++.++.| .+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 6789999999999965 99999987531 122 345778888888887766554 47999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|++||||||||+||+.+...+.+.|++... ..+++|+|+|||+++.+.. ||||+||++|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-------~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE-------ELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-------hCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987641 1114569999999999866 99999999999999
Q ss_pred ecChhHHhhccCChH
Q 048639 1113 MGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f 1127 (1139)
.|+|+++.+++...|
T Consensus 220 ~g~~~~~~~~p~~~~ 234 (362)
T TIGR03258 220 HGEPQALYDAPADGF 234 (362)
T ss_pred EcCHHHHHhCcCcHH
Confidence 999999998766555
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=376.33 Aligned_cols=214 Identities=27% Similarity=0.509 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 964 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred eEEccccccccc-cHHHHhccCCCcC----------------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEAA----------------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~~----------------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+|+||+|.+|.+ |+++|+.++.... ..+++.++++..++.+ ........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 999999999986 9999998653211 1223445555555433 23344567999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +.++|+|++||+++.+.. ||+|++|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~vsH~~~~~~~~~d~i~~l~ 217 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR---------ERGITVLLVEHDMDVVMSLADRVTVLD 217 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999998764 234569999999999976 99999999
Q ss_pred CCEEEEecChhHHhhc
Q 048639 1107 KGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl~~ 1122 (1139)
+|++++.|++++++++
T Consensus 218 ~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 218 QGRVIAEGTPDEVRNN 233 (236)
T ss_pred CCEEEeecCHHHhccC
Confidence 9999999999998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=378.33 Aligned_cols=224 Identities=35% Similarity=0.479 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~l 957 (1139)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999998863 345
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCc-------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~-------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||++.+|..|++||+.++... ..++++.++++.+++.+.+ ++.+++. ..+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHH
Confidence 5678899999999999999999999865210 1245677888888875443 2334443 467999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|++|||||||++||+.+...+.+.|++.. . ++|+|+|||+++.+.. ||||++|++|+
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~-~~tvii~sH~~~~~~~~~d~i~~l~~G~ 226 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK---------E-SYTIIIVTHNMQQAGRISDRTAFFLNGC 226 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---------c-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999864 3 3569999999999866 99999999999
Q ss_pred EEEecChhHHhhccCChHH
Q 048639 1110 VVEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~ 1128 (1139)
+++.|+++++.+++.-.|.
T Consensus 227 i~~~g~~~~~~~~~~~~~~ 245 (254)
T PRK14273 227 IEEESSTDELFFNPKNTKT 245 (254)
T ss_pred EEEeCCHHHHHhCCCChHH
Confidence 9999999999876554443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=382.77 Aligned_cols=221 Identities=29% Similarity=0.544 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHHH
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLKS 330 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 330 (1139)
++++|++|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHHH
Q 048639 331 LRKNIGAVSQEP--SLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 331 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi~ 405 (1139)
+|++||||||+| .+|+.|+.|||.++... .+.++..+ .+.+.++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 58888999999986321 22222222 123455555 6653 456788999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|||||+.+|+++||||||++||+.+...+.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999874 48999999999999865 99999999999999999998876
Q ss_pred cc
Q 048639 483 TS 484 (1139)
Q Consensus 483 ~~ 484 (1139)
..
T Consensus 236 ~~ 237 (286)
T PRK13646 236 DK 237 (286)
T ss_pred CH
Confidence 43
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=381.87 Aligned_cols=221 Identities=30% Similarity=0.484 Sum_probs=187.5
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----hh
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL----RS 962 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~ 962 (1139)
.++||+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777752 468999999999999999999999999999999999999999999999999988765543 46
Q ss_pred hceEEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+++|+||++.+|. .|+++|+.++.. ...++++.++++.+++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999884 699999976311 112356778899999887766554 3699999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||+++|+||||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g 243 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA--------ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999987641 224569999999999865 9999999999999999
Q ss_pred ChhHHhhccCChHHH
Q 048639 1115 SHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1115 ~~~eLl~~~~g~f~~ 1129 (1139)
+++++++++...|.+
T Consensus 244 ~~~~~~~~~~~~~~~ 258 (269)
T cd03294 244 TPEEILTNPANDYVR 258 (269)
T ss_pred CHHHHHhCcCcHHHH
Confidence 999998765555544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=381.70 Aligned_cols=221 Identities=32% Similarity=0.519 Sum_probs=185.3
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC----CCHHH
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD----LDLKS 330 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 330 (1139)
++++|++|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999853 34556
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHH
Q 048639 331 LRKNIGAVSQEP--SLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 331 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~ 405 (1139)
.++.|+||+|+| .+|+.|++|||.++... .+.++..+ .+.+.++.+ |+. ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778999999998 68888999999986321 22332221 122344544 443 2346678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|||||+.+|++|||||||++||+.+...+.+.++++.+ |.|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988743 8999999999999865 99999999999999999998865
Q ss_pred cc
Q 048639 483 TS 484 (1139)
Q Consensus 483 ~~ 484 (1139)
..
T Consensus 236 ~~ 237 (290)
T PRK13634 236 DP 237 (290)
T ss_pred CH
Confidence 43
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=381.37 Aligned_cols=219 Identities=32% Similarity=0.542 Sum_probs=190.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+| .++..|+.+||.++.. ..++ +++.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999986421 2233 3457788888887765442 357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+||||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+..||+|++|++|++++.|++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--------~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE--------KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAP 224 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999987640 224569999999999988999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++++.
T Consensus 225 ~~~~~~ 230 (277)
T PRK13642 225 SELFAT 230 (277)
T ss_pred HHHhcC
Confidence 998854
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=392.50 Aligned_cols=219 Identities=32% Similarity=0.549 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999963 4589999999999999999999999999999999999999999999999999877654 5789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.+|.. |++|||.++.. ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999987632 112 346788899999988777665 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||..+...+.+.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~--------~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 229 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR--------KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTP 229 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999997651 124569999999999765 999999999999999999
Q ss_pred hHHhhccCChH
Q 048639 1117 STLVAESQGVY 1127 (1139)
Q Consensus 1117 ~eLl~~~~g~f 1127 (1139)
+++++++...|
T Consensus 230 ~~i~~~p~~~~ 240 (375)
T PRK09452 230 REIYEEPKNLF 240 (375)
T ss_pred HHHHhCcccHH
Confidence 99998776555
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=373.65 Aligned_cols=218 Identities=33% Similarity=0.517 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 961 (1139)
|+++|++++|+++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred hhceEEcccccccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++++|+||+|.+|. .|++||+.++.. .. .++++.++++..++.+...+. ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 88999999999997 699999976421 11 234677888888887655443 3579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|++|||||||++||+.+...+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--------~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINR--------ELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999987640 224569999999999876 999999999999999
Q ss_pred cChhHHhhc
Q 048639 1114 GSHSTLVAE 1122 (1139)
Q Consensus 1114 G~~~eLl~~ 1122 (1139)
|+++++.++
T Consensus 223 ~~~~~~~~~ 231 (233)
T cd03258 223 GTVEEVFAN 231 (233)
T ss_pred cCHHHHhcC
Confidence 999998754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=376.89 Aligned_cols=220 Identities=34% Similarity=0.534 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999963 359999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||++.+|..|+++|+.++.. ...++++.++++.+++.+++.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 578899999999999999999999986421 1124567788888888655432 22344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .+ +|||++||+++.+.. ||+|++|++|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tvii~tH~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK---------AR-YTIIIVTHNMQQAARVSDVTAFFYMGK 225 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------cC-CeEEEEEecHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 469999999999865 99999999999
Q ss_pred EEEecChhHHhhccC
Q 048639 1110 VVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~ 1124 (1139)
+++.|+++++.+.+.
T Consensus 226 i~~~g~~~~~~~~~~ 240 (253)
T PRK14242 226 LIEVGPTEQIFTRPR 240 (253)
T ss_pred EEEeCCHHHHHcCCC
Confidence 999999999986543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=376.11 Aligned_cols=219 Identities=32% Similarity=0.497 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC---CCccEEEECCccCCCCCHHHHh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD---PSNGDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 332 (1139)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6999999999999887777788
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCC--C--CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTGSLMDNIKVGNMD--A--DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~--~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
+.++|+||++.+|+.|++||+.++... . ..++. ...+.+.++.+ +..+.+...+.+.+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEE-----EALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHH-----HHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 899999999999999999999876311 0 00111 01112233332 1111233566788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988778999999999998865 99999999999999999998864
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=391.82 Aligned_cols=217 Identities=30% Similarity=0.547 Sum_probs=184.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999963 4599999999999999999999999999999999999999999999999999876654 468
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
|+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999965 999999987421 12222111 112233333 4444556667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999988753 7999999999999765 999999999999999999998764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=387.28 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCC----------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 885 RIEFQNIKFNYPSRP----------EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
-|+++||+++|+.+. ..++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChH---HHhhhceEEcccc--ccc-cccHHHHhccC----CCcCC----HHHHHHHHHHcCchH-HHhhCCCCcccccc
Q 048639 955 YNLR---RLRSQIGLVQQEP--LLF-SCSIRNNICYG----NEAAS----EAEIVEVSKKANIHD-FISSLPDGYDTVVG 1019 (1139)
Q Consensus 955 ~~l~---~lR~~i~~V~Qdp--~LF-~gTIreNL~~~----~~~~s----d~ei~~al~~~~l~~-~i~~lp~gldt~v~ 1019 (1139)
++.. .+|++++||+|+| .|| ..||.+|+.++ .+..+ ++.+.++++.+++.+ ...+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 8754 4678899999999 467 57999998642 11123 234566778887732 3222
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-
Q 048639 1020 EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN- 1098 (1139)
Q Consensus 1020 e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~- 1098 (1139)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.. ..++|+|+|||+++.+..
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~--------~~~~til~iTHdl~~~~~~ 228 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR--------EMGLSLIFIAHDLAVVKHI 228 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHh
Confidence 3357999999999999999999999999999999999999999999987641 224569999999999986
Q ss_pred CCEEEEEeCCEEEEecChhHHhhccCChHHH
Q 048639 1099 SDVIVVMDKGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1099 ~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
||||+||++|+|+|.|+++++++++...|.+
T Consensus 229 ~dri~vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 229 SDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999999999999776666655
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=373.14 Aligned_cols=220 Identities=31% Similarity=0.468 Sum_probs=194.1
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 3599999999999999999999999999999999999999999999998
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+++|+||++.+|++|+++|+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999987532 34456777888899999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHH-HhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSAL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+|+||||||||++||+++...+.+.+ ++.. . ++|+|+|||+++.+..||+|++|++|++++.|+++++.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~---------~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLM---------A-NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhh---------C-CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999888754 4432 2 34699999999999889999999999999999999998
Q ss_pred hccCChHHHHH
Q 048639 1121 AESQGVYSRLY 1131 (1139)
Q Consensus 1121 ~~~~g~f~~l~ 1131 (1139)
+. ...|.+.+
T Consensus 247 ~~-~~~~~~~~ 256 (282)
T cd03291 247 SL-RPDFSSKL 256 (282)
T ss_pred hc-chHHHHHH
Confidence 64 44555443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=363.66 Aligned_cols=201 Identities=38% Similarity=0.567 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPE--VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|+++||+++|++..+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++|+||+|.+|++|+++|+.++. ..++++.+++++.+++.+++..+|.|+++.+.+.+..||+|||||++|||||+++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999864 34566788889999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHH-HHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCE
Q 048639 1044 AIMLLDEATSALDAESERVIVS-ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~-~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ 1109 (1139)
+++||||||++||+++.+.+.+ .+++.. ++++|||++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~---------~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLL---------LNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhc---------cCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456543 33456999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=384.11 Aligned_cols=219 Identities=31% Similarity=0.526 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC----CChHH
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE----YNLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~~l~~ 959 (1139)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhhhceEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 960 LRSQIGLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 960 lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
+|++++||||+| .+|+.|+++|+.++.. ..+. +++.++++.++|.+.+ .+ .....|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LA----RSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hh----CCcccCCHHHHH
Confidence 888999999998 6888999999986521 1222 3466777788875222 12 234579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|++... ..++|||+|||+++.+.. ||||++|++|++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~--------~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK--------EKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999987641 224569999999999865 999999999999
Q ss_pred EEecChhHHhhc
Q 048639 1111 VEMGSHSTLVAE 1122 (1139)
Q Consensus 1111 ve~G~~~eLl~~ 1122 (1139)
++.|+++++.+.
T Consensus 225 ~~~g~~~~~~~~ 236 (290)
T PRK13634 225 FLQGTPREIFAD 236 (290)
T ss_pred EEECCHHHHhcC
Confidence 999999998754
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=374.80 Aligned_cols=218 Identities=30% Similarity=0.520 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 45999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchH--HHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHD--FISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~--~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
|+||+|.+|. .|+++|+.++.. .. .++++.++++..++.+ +. ...+.+||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVA 147 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHH
Confidence 9999999985 699999976421 11 1345667777777753 22 233467999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|++|||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--------~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 219 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ--------ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999997641 224569999999998765 99999999999999999
Q ss_pred hhHHhhccC
Q 048639 1116 HSTLVAESQ 1124 (1139)
Q Consensus 1116 ~~eLl~~~~ 1124 (1139)
++++.+++.
T Consensus 220 ~~~~~~~~~ 228 (242)
T cd03295 220 PDEILRSPA 228 (242)
T ss_pred HHHHHcCCC
Confidence 999976533
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=383.40 Aligned_cols=217 Identities=26% Similarity=0.469 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC---------
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--------- 954 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--------- 954 (1139)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997432 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhhceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCch-HHHhhC
Q 048639 955 ---------------YNLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIH-DFISSL 1010 (1139)
Q Consensus 955 ---------------~~l~~lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~-~~i~~l 1010 (1139)
.+...+|++++||||+| .+|..|+++||.++.. ..+ ++++.++++.+++. ++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 13457889999999986 6888999999987531 122 34567788888875 3433
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEe
Q 048639 1011 PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA 1090 (1139)
Q Consensus 1011 p~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~Ia 1090 (1139)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ..++|||+||
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tiiivt 222 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN---------KQGKTIILVT 222 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------HCCCEEEEEe
Confidence 2345799999999999999999999999999999999999999999998764 3345699999
Q ss_pred cCchhhhc-CCEEEEEeCCEEEEecChhHHhhc
Q 048639 1091 HRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1091 Hrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
|+++.+.. ||||++|++|++++.|+++++.++
T Consensus 223 Hd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 223 HDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred eCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99998765 999999999999999999998764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=390.36 Aligned_cols=216 Identities=31% Similarity=0.509 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 459999999999999999999999999999999999999999999999999976554 35689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+||+|++.+|+. |++||+.++... .+.++.. ..+.+.++.+ |+.......+.+||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 999999987431 1222211 1223344444 4445566778899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 7899999999999876 999999999999999999998764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=376.14 Aligned_cols=222 Identities=34% Similarity=0.556 Sum_probs=190.1
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--C
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--Y 955 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~ 955 (1139)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999963 369999999999999999999999999999999999986 479999999999863 4
Q ss_pred ChHHHhhhceEEccccccccccHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
+...+|++++|+||+|.+|+.|+++|+.++.. ..+ +++++++++.+++.+.+. ....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999986421 112 346778888888754332 2233455689999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~ 1107 (1139)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. . ++|+|++||+++.+.. ||+|++|++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---------~-~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK---------Q-DYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999764 3 3469999999999865 999999999
Q ss_pred CEEEEecChhHHhhccC
Q 048639 1108 GEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1108 G~ive~G~~~eLl~~~~ 1124 (1139)
|++++.|+++++.+.+.
T Consensus 231 G~i~~~g~~~~~~~~~~ 247 (260)
T PRK10744 231 GELIEFGNTDTIFTKPA 247 (260)
T ss_pred CEEEEeCCHHHHHhCCC
Confidence 99999999999986543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=375.59 Aligned_cols=214 Identities=33% Similarity=0.536 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh---HHHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL---RRLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 962 (1139)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999961 2469999999999999999999999999999999999999999999999999887654 34788
Q ss_pred hceEEcccccccc-ccHHHHhccCCC--------------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNE--------------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~--------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+++|+||++.+|. .|+++|+.++.. ...++++.++++..++.++... ...+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----------RADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCH
Confidence 9999999998886 699999976421 1123456777777777655432 3457999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++... ..++|+|++||+++.+.+ ||+|++|+
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tiii~tH~~~~~~~~~d~v~~l~ 220 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK--------EDGITVIINLHQVDLAKKYADRIVGLK 220 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence 999999999999999999999999999999999999999987640 224569999999999865 99999999
Q ss_pred CCEEEEecChhHHh
Q 048639 1107 KGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl 1120 (1139)
+|++++.|+++++.
T Consensus 221 ~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 221 AGEIVFDGAPSELD 234 (243)
T ss_pred CCEEEecCCHHHhC
Confidence 99999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=371.72 Aligned_cols=216 Identities=36% Similarity=0.597 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+|++|++.+|+.|++||+.++....... ...+.+.++.+ |++ ......+.+||||||||++||||++.+|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEK-------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcH-------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998764211111 01122344444 333 2345678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+++||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999998864 38999999999999875 999999999999999999998754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=369.93 Aligned_cols=205 Identities=36% Similarity=0.618 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999987654 3567899
Q ss_pred EEcccccccc-ccHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|. .|+++|+.++... ..++++.++++..++.++..+.| .+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence 9999998885 6999999864211 12345777888888876654433 4799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|+++|++|||||||++||+++...+.+.|++... +.++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQR--------ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999987640 224569999999998876 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=390.91 Aligned_cols=217 Identities=30% Similarity=0.493 Sum_probs=186.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc--cEEEECCccCCCCCHHHHh
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN--GDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~ 332 (1139)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 46999999999963 359999999999999999999999999999999999999999 999999999976655 35
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+.|+||+|++.+|+. |++|||.|+.. ....++..+ .+.+.++.+ |++......+.+||||||||++||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999975 99999998642 122222221 123345544 55556677888999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC---CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQ---GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988653 6899999999999865 999999999999999999999764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=369.73 Aligned_cols=211 Identities=26% Similarity=0.425 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999642 14699999999999999999999999999999999999999999999999998764 356788999
Q ss_pred EEccccccc-cccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLF-SCSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF-~gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+| ..|+++|+.++.. .. .++++.++++..++.+... +. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------KR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------Ch----hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999976321 11 1245677788887765443 22 24799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+++|++|||||||++||+.+.+.+.+.|++.. .+ +|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR---------KG-RSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh---------cC-CEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999764 33 569999999999876 9999999999999999998
Q ss_pred HH
Q 048639 1118 TL 1119 (1139)
Q Consensus 1118 eL 1119 (1139)
++
T Consensus 218 ~~ 219 (220)
T cd03263 218 EL 219 (220)
T ss_pred Hc
Confidence 75
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=393.79 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++++
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999963 359999999999999999999999999999999999999999999999999987665 35789
Q ss_pred eEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|. .|+++|+.++.. ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 499999987532 112 346788888888876655443 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+|
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~--------~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~ 218 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK--------RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------HhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999987641 224569999999998876 999999999999999999
Q ss_pred hHHhhccCChH
Q 048639 1117 STLVAESQGVY 1127 (1139)
Q Consensus 1117 ~eLl~~~~g~f 1127 (1139)
+++.+++...|
T Consensus 219 ~~i~~~p~~~~ 229 (369)
T PRK11000 219 LELYHYPANRF 229 (369)
T ss_pred HHHHhCcccHH
Confidence 99987765544
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=370.24 Aligned_cols=214 Identities=29% Similarity=0.454 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 964 (1139)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 369999999999999999999999999999999999999999999999999988776654 6779
Q ss_pred eEEccccccccc-cHHHHhccCCCcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|+||++.+|.+ |+++|+.++..... .+++.++++..+ . ++.........||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~----l~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------R----LKERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------h----hhhhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999987532211 122333333331 1 22222344567999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhH
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~e 1118 (1139)
+++|++|||||||++||+++...+.+.|++.. ..++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR---------DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99999999999999999999999999999764 234569999999999876 99999999999999999988
Q ss_pred Hhh
Q 048639 1119 LVA 1121 (1139)
Q Consensus 1119 Ll~ 1121 (1139)
+.+
T Consensus 219 ~~~ 221 (222)
T cd03224 219 LLA 221 (222)
T ss_pred Hhc
Confidence 763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=378.50 Aligned_cols=216 Identities=30% Similarity=0.523 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..++++.|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24599999999999999999999999999999999999999999999999999887778888899
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+| .++..|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5778899999998632 112211111 112233333 3333445566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998874 48999999999999865 999999999999999998754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=369.80 Aligned_cols=207 Identities=31% Similarity=0.480 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 333 (1139)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 24699999999999999999999999999999999999999999999999988765433 3678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+++|++|++.+|. .|++||+.++... ...++. ...+.+.++.+ |+.........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDA-----NERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999999886 5999999875211 111111 11122344444 344445566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i 471 (1139)
+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 47899999999999875 999999999975
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=374.37 Aligned_cols=221 Identities=34% Similarity=0.550 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---HHHHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKSLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~ 333 (1139)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999987765 456778
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNMDAD--DEQI---YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
.++|+||++.+|. .|++||+.++..... ...+ ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999999887 599999987532110 0000 0001111223445554 445556778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999998874 38999999999999985 9999999999999999998863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=369.74 Aligned_cols=216 Identities=29% Similarity=0.483 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcce
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 335 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999887766544 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+|++|++.+|.. |++||+.++.......+..+ .+.+.++.++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 99999988643221111111 1112233321 1233456677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 57899999999998866 9999999999999999888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=380.71 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
-|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 246999999999999999999999999999999999999999999999999984 344567889
Q ss_pred hceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
+++|+||+| .+|+.|+++|+.++.. ..+ ++++.++++..++.++.+ ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 5788999999986421 122 245677788888866533 234679999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+||||||||++||+++...+.+.|++... ..++|||++||+++.+.. ||||++|++|++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK--------ELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999987641 224569999999999974 999999999999999
Q ss_pred cChhHHhhc
Q 048639 1114 GSHSTLVAE 1122 (1139)
Q Consensus 1114 G~~~eLl~~ 1122 (1139)
|+++++++.
T Consensus 224 g~~~~~~~~ 232 (283)
T PRK13636 224 GNPKEVFAE 232 (283)
T ss_pred CCHHHHhcC
Confidence 999998863
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=378.38 Aligned_cols=218 Identities=33% Similarity=0.607 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888878889999
Q ss_pred eEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+| .++..|+++|+.++.. ..+. +.+.++++..++.++..+.| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 1222 23667788888877655433 57999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|++|||||||++||+.+.+.+.+.|++... .+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--------~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~ 226 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK--------TRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKP 226 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999997641 223569999999999888999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.++
T Consensus 227 ~~~~~~ 232 (271)
T PRK13632 227 KEILNN 232 (271)
T ss_pred HHHhcC
Confidence 998754
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=380.36 Aligned_cols=220 Identities=26% Similarity=0.477 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC---------
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--------- 325 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--------- 325 (1139)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1359999999999999999999999999999999999999999999999876532
Q ss_pred ---------------CCHHHHhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC
Q 048639 326 ---------------LDLKSLRKNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS 386 (1139)
Q Consensus 326 ---------------~~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 386 (1139)
.+...+++.||||||+| .+|..|++|||.|+.. ....+++.+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999986 6788899999998742 2233333221 22344444 443
Q ss_pred -ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEE
Q 048639 387 -TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMI 463 (1139)
Q Consensus 387 -t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i 463 (1139)
......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34667888999999999999999999999999999999999999999999998875 48999999999998765 9999
Q ss_pred EEEeCcEEEEecChhhhhcc
Q 048639 464 AVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 464 ~~l~~G~i~~~g~~~~l~~~ 483 (1139)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998664
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=361.32 Aligned_cols=203 Identities=34% Similarity=0.640 Sum_probs=179.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999887777788889
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||+|+|.+|++|++||+.+... ...+++.+++ + +++++..||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l---------~---------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGAL---------R---------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHh---------h---------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999986542 2333322221 1 34567899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecCh
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 477 (1139)
+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999877999999999999988753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=373.46 Aligned_cols=215 Identities=33% Similarity=0.541 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999963 469999999999999999999999999999999999999999999999998865543 25689
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+|++|+|.++. .|++||+.++.... ...+. ...+.+.++.+ |++......+.+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI-----RAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHH-----HHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999999986 59999998863211 11111 11223445555 4555566777899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
||+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999988743 7899999999998765 99999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=377.94 Aligned_cols=224 Identities=30% Similarity=0.516 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999887777778899
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEP--SLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+| .+++.|++|||.++... .+.++..+ .+.+.++.+ |+...+......||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45677999999886321 12222211 112233333 3444455667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHH
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 487 (1139)
.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+....+
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 234 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHML 234 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHHHH
Confidence 99999999999999999999999999988753 78999999999998889999999999999999999887654333
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=391.54 Aligned_cols=230 Identities=25% Similarity=0.468 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDAD--DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+ ++.|++||+.++..... ... ........+.+.++.+ |+.........+||||||||++|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~-~~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDT-WTETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccC-CCHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999987 56799999998752110 000 0000111122334433 34444556678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchHHHHH
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 490 (1139)
+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++.. +.+.+.
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~-~~l~~~ 235 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA-DTLRAA 235 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc-HHHHHH
Confidence 999999999999999999999999999875 48899999999999965 999999999999999999998764 345555
Q ss_pred Hh
Q 048639 491 FT 492 (1139)
Q Consensus 491 ~~ 492 (1139)
|.
T Consensus 236 ~~ 237 (402)
T PRK09536 236 FD 237 (402)
T ss_pred hC
Confidence 53
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=376.21 Aligned_cols=224 Identities=29% Similarity=0.470 Sum_probs=190.7
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE-- 954 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~-- 954 (1139)
..+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++..
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4699999999999999999999999999999999999975 89999999999875
Q ss_pred CChHHHhhhceEEccccccccccHHHHhccCCC-------c-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------A-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 955 ~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
.+...+|++++|+||+|.+|..|+++|+.++.. . ..++++.++++.+++.+++.. .....+..||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCC
Confidence 345678899999999999999999999986421 1 113457788888888654421 2234456799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. . ++|+|++||+++.+.. ||+|++|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~---------~-~~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR---------Q-NYTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh---------c-CCeEEEEEcCHHHHHhhCCEEEEE
Confidence 999999999999999999999999999999999999999999764 3 3469999999999966 9999999
Q ss_pred eCCEEEEecChhHHhhccCC
Q 048639 1106 DKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g 1125 (1139)
++|++++.|+++++..++..
T Consensus 236 ~~G~i~~~g~~~~~~~~~~~ 255 (267)
T PRK14235 236 HLGNLVEVGDTEKMFTNPDD 255 (267)
T ss_pred ECCEEEEeCCHHHHHhCCCC
Confidence 99999999999999865443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.54 Aligned_cols=216 Identities=33% Similarity=0.549 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-----ccEEEECCccCCCC--CHH
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNIKDL--DLK 329 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 329 (1139)
++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998653 345
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCC----ccccccCCCCChHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYS----TELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~----t~i~~~g~~LSgGqkq 402 (1139)
.+++.++|+||++.+|+.|++||+.++... ...++..+ .+.+.++.+ |+. ......+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 667899999999999999999999875311 11122111 122334444 333 4456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999998865 9999999999999999998876
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=367.71 Aligned_cols=207 Identities=34% Similarity=0.576 Sum_probs=174.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999876442 467899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||++.++. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999875321 1111111 1223445555 455556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998864 38999999999998866 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=367.44 Aligned_cols=208 Identities=26% Similarity=0.483 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 169999999999999999999999999999999999999999999999999875 456778999
Q ss_pred eEEccccccccc-cHHHHhccCCC--c----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--A----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+||+|.+|.+ |++||+.+... . ..++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 1 123467778888888665443 34579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|++++|++|||||||++||+.+.+.+.+.|++.. .+++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR---------ALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999764 334569999999998876 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=374.61 Aligned_cols=220 Identities=33% Similarity=0.539 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---------
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN--------- 956 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--------- 956 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 36999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHHhhhceEEcccccccc-ccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCC
Q 048639 957 ----LRRLRSQIGLVQQEPLLFS-CSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQ 1024 (1139)
Q Consensus 957 ----l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1024 (1139)
...+|++++|++|++.+|. .|+++|+.++.. ...++++.++++..++.++..+. ...
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhh
Confidence 2467889999999998885 799999986411 11234577788888877665443 357
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEE
Q 048639 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIV 1103 (1139)
Q Consensus 1025 LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~ 1103 (1139)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++... ..++|+|+|||+++.+.+ |||++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--------~~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLAS--------EHDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999997641 224569999999999865 99999
Q ss_pred EEeCCEEEEecChhHHhhccCChH
Q 048639 1104 VMDKGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1104 vl~~G~ive~G~~~eLl~~~~g~f 1127 (1139)
+|++|++++.|+++++.+.+.-.|
T Consensus 219 ~l~~G~i~~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 219 FFDKGRIVEQGKPDEIFRQPKEER 242 (252)
T ss_pred EEECCEEEEeCCHHHHhcCCCcHH
Confidence 999999999999999986544333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=367.80 Aligned_cols=211 Identities=25% Similarity=0.428 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999988753 356788999
Q ss_pred EEccccccccc-cHHHHhccCC-----C-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGN-----E-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~-----~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+|.. |+++|+.++. + ...++++.++++..++.++.++.| .+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999998874 9999997531 1 112346788888888876654432 4799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
++.+|++|||||||++||+++.+.+.+.|++... +.++|+|+|||+++.+.. ||||++|++|++++.|+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE--------EFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPE 217 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChH
Confidence 9999999999999999999999999999987641 224569999999999876 9999999999999999988
Q ss_pred HH
Q 048639 1118 TL 1119 (1139)
Q Consensus 1118 eL 1119 (1139)
++
T Consensus 218 ~~ 219 (220)
T cd03265 218 EL 219 (220)
T ss_pred Hc
Confidence 75
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=383.53 Aligned_cols=215 Identities=28% Similarity=0.475 Sum_probs=185.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999998754 457899
Q ss_pred ceEEcccccccc-ccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+||+||+|.+|. .|++||+.+... ..+. +++.++++.+++.+. .++++ .+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENK-------ADAKV----GELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchH-------hcCch----hhCCHHHHHHHHHH
Confidence 999999999885 699999985321 1222 345566777766543 44454 36999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+.+|++|+|||||++||+.+.+.+++.|+++. .+++|||++||+++.+.. ||||++|++|++++.|+
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~---------~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL---------ARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999864 345569999999999976 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
++++.+.
T Consensus 222 ~~~l~~~ 228 (306)
T PRK13537 222 PHALIES 228 (306)
T ss_pred HHHHHhc
Confidence 9999754
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=374.92 Aligned_cols=225 Identities=29% Similarity=0.439 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccC--CCCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIK--EYNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999987 4556
Q ss_pred HHHhhhceEEccccccccc-cHHHHhccCCC--------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 958 RRLRSQIGLVQQEPLLFSC-SIRNNICYGNE--------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
..+|++++|+||+|.+|.. |+++|+.++.. ...++++.++++..++.+.+.. .......+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788999999999999975 99999986421 1112456778888887554322 123345679999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~ 1107 (1139)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. ++ +|+|++||+++.+.. ||+|++|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tiii~sH~~~~~~~~~d~i~~l~~ 223 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK---------KE-YTIVLVTHSPAQAARVSDYVAFLYL 223 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------hC-CEEEEEECCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999764 33 469999999999876 999999999
Q ss_pred CEEEEecChhHHhhccCChHHH
Q 048639 1108 GEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1108 G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
|++++.|+++++.+++...|.+
T Consensus 224 G~i~~~~~~~~~~~~~~~~~~~ 245 (253)
T PRK14267 224 GKLIEVGPTRKVFENPEHELTE 245 (253)
T ss_pred CEEEEeCCHHHHHhCCCcHHHH
Confidence 9999999999998654333443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=377.45 Aligned_cols=226 Identities=24% Similarity=0.413 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR 961 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998876543 357
Q ss_pred hhceEEccccccccc-cHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++++|+||++.+|.+ |+++|+.++.. ..+ ++++.++++..++.+.... ....||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 789999999999986 99999975311 112 2345667777777554332 2347999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|++|||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS--------ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 999999999999999999999999999999999997641 224569999999999876 99999999999999
Q ss_pred ecChhHHhhccCChHHHHHH
Q 048639 1113 MGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
.|+++++++++...+..++.
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 225 HGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred eCCHHHHhcCCcHHHHHHHH
Confidence 99999998754444555554
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=371.10 Aligned_cols=219 Identities=33% Similarity=0.539 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HHh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 332 (1139)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997421 12699999999999999999999999999999999999999999999999998776543 347
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+.++|+||++.+|. .|++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 599999987532 1111111 11233455555 55555667788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+.+|+++||||||++||+.+...+.+.++++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998864 3 7899999999999876 99999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.96 Aligned_cols=212 Identities=28% Similarity=0.417 Sum_probs=180.2
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---H
Q 048639 885 RIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---L 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---l 960 (1139)
-|+++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 146999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-hhceEEccccccccc-cHHHHhccCC------CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 961 R-SQIGLVQQEPLLFSC-SIRNNICYGN------EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 961 R-~~i~~V~Qdp~LF~g-TIreNL~~~~------~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
| ++++|+||+|.+|.. |+++|+.++. +...++++.++++..++.++..+ ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999998875 9999997631 11123457778888877655433 235799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
++||||++.+|+||||||||++||+++...+.+.|++... .+++|+|+|||+++.+..+|++++|++|+|++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR--------LQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987630 23456999999999999999999999999998
Q ss_pred ecC
Q 048639 1113 MGS 1115 (1139)
Q Consensus 1113 ~G~ 1115 (1139)
.|+
T Consensus 226 ~~~ 228 (233)
T PRK11629 226 ELS 228 (233)
T ss_pred Eec
Confidence 775
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=375.22 Aligned_cols=220 Identities=31% Similarity=0.534 Sum_probs=181.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 35999999999963 359999999999999999999999999999999999974 689999999998864 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkq 402 (1139)
...+++.++|++|++.+|+.|++||+.++.. .. ..++..+ .+.+.++.+ .+......+..+.+|||||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE-----RVERSLRHAALWDEVKDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 5567889999999999998999999987521 11 1111111 111222222 111123456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988668999999999999865 9999999999999999998886
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
+
T Consensus 237 ~ 237 (253)
T PRK14242 237 T 237 (253)
T ss_pred c
Confidence 4
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=377.78 Aligned_cols=216 Identities=30% Similarity=0.541 Sum_probs=188.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 966 LVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 966 ~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
||||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999986421 122 345788889999887665543 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|++|||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+.+ ||||++|++|++++.|++
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~ 222 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE--------TYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCH
Confidence 99999999999999999999999999999987641 124569999999999964 999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++++.
T Consensus 223 ~~~~~~ 228 (277)
T PRK13652 223 EEIFLQ 228 (277)
T ss_pred HHHhcC
Confidence 999754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=378.87 Aligned_cols=219 Identities=30% Similarity=0.530 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCC---CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC-hHHH
Q 048639 885 RIEFQNIKFNYPSRP---EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRL 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~l 960 (1139)
-|+++|++++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hhhceEEccccc--cccccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 961 RSQIGLVQQEPL--LFSCSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 961 R~~i~~V~Qdp~--LF~gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
|++++|+||+|. +|..|+.+|+.++.. .. .++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677799999987521 11 2456788899999988766544 4799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
++|||||+++|++|||||||++||+.+...+.+.|+++.. ..++|||++||+++.+..||||++|++|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK--------KYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999997640 22456999999999998899999999999999
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|+++++..+
T Consensus 225 ~g~~~~~~~~ 234 (280)
T PRK13633 225 EGTPKEIFKE 234 (280)
T ss_pred ecCHHHHhcC
Confidence 9999999754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=344.57 Aligned_cols=222 Identities=28% Similarity=0.478 Sum_probs=192.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
.++++|++..|+. ..+|++|||++++||+++++|+||+|||||+++|+|+.+|.+|+|.++|+|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4889999999974 459999999999999999999999999999999999999999999999999999988764 778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||||.-.+|+. ||+||+.+|.....+++- .....++..+-+|. +......++.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999975 999999988432221111 11112334455663 56677888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccch
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 485 (1139)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++...+.. |||.+||++|+|+.+|+.++|.++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999874 6799999999998765 99999999999999999999987644
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=368.35 Aligned_cols=215 Identities=26% Similarity=0.475 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 4789999999642 24699999999999999999999999999999999999999999999999988654 356678899
Q ss_pred EEecCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLF-TGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.++ ..|++||+.++.. ....++.. ..+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999988 4699999987421 11111111 1123344444 344445566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999875 999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=372.38 Aligned_cols=220 Identities=32% Similarity=0.536 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 333 (1139)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999876553 34678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNMDAD--DEQI---YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~--~~~~---~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+++|++|++.+|. .|++||+.++..... .... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999999886 599999987642110 0000 0001112233445555 455556777889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999998874 37899999999999865 999999999999999999886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=364.95 Aligned_cols=200 Identities=32% Similarity=0.522 Sum_probs=174.3
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999641 469999999999999999999999999999999999999999999999998864 456788999
Q ss_pred Ecccc--ccccccHHHHhccCCCc--CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 967 VQQEP--LLFSCSIRNNICYGNEA--ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 967 V~Qdp--~LF~gTIreNL~~~~~~--~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+||+| .+|..|++||+.++.+. ..++++.++++..++.++..+.| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 46789999999875332 22457889999999987655444 36999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
|++|||||||++||+++.+.+.+.|++.. ++++|+|++||+++.+.. ||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELA---------AQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999764 234569999999999976 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=373.67 Aligned_cols=220 Identities=29% Similarity=0.470 Sum_probs=187.5
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC-------
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY------- 955 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------- 955 (1139)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred ------ChHHHhhhceEEcccccccc-ccHHHHhccCC----C---cCCHHHHHHHHHHcCchHHHhhCCCCccccccCC
Q 048639 956 ------NLRRLRSQIGLVQQEPLLFS-CSIRNNICYGN----E---AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021 (1139)
Q Consensus 956 ------~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~----~---~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~ 1021 (1139)
....+|++++||||++.+|. .|++||+.++. . ...++++.++++..++.++.. ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 13467889999999999997 59999997531 0 112345777788888765531 223
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CC
Q 048639 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD 1100 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~D 1100 (1139)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +.++|+|+|||+++.+.. ||
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~---------~~g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA---------EEGKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHHhcC
Confidence 45799999999999999999999999999999999999999999999764 334569999999999987 99
Q ss_pred EEEEEeCCEEEEecChhHHhhccC
Q 048639 1101 VIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1101 rI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
||++|++|++++.|+++++.+.+.
T Consensus 221 ~i~~l~~G~i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 221 HVIFLHQGKIEEEGAPEQLFGNPQ 244 (257)
T ss_pred EEEEEECCEEEEeCCHHHhhhCcc
Confidence 999999999999999999986543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=382.85 Aligned_cols=228 Identities=28% Similarity=0.435 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCC-------CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 885 RIEFQNIKFNYPSRP-------EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988865
Q ss_pred H---HHhhhceEEccccc--ccc-ccHHHHhccC---C----CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCC
Q 048639 958 R---RLRSQIGLVQQEPL--LFS-CSIRNNICYG---N----EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQ 1024 (1139)
Q Consensus 958 ~---~lR~~i~~V~Qdp~--LF~-gTIreNL~~~---~----~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~ 1024 (1139)
. .+|++++||||+|. |+. -|+.+|+... . +....+++.++++.+++.+- .++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCC----Ccc
Confidence 3 56789999999993 554 4888887521 0 11123467888888888531 22332 357
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEE
Q 048639 1025 LSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIV 1103 (1139)
Q Consensus 1025 LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~ 1103 (1139)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|+++.. ..++|+|+|||+++.+.. ||||+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~--------~~g~til~iTHdl~~~~~~adrv~ 226 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ--------ELGLSYVFISHDLSVVEHIADEVM 226 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999987641 224569999999999986 99999
Q ss_pred EEeCCEEEEecChhHHhhccCChHHHH
Q 048639 1104 VMDKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1104 vl~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
||++|+|+|.|+++++++++...|.+.
T Consensus 227 vm~~G~ive~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 227 VMYLGRCVEKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EEECCEEEEECCHHHHhcCCCCHHHHH
Confidence 999999999999999998766666653
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=368.47 Aligned_cols=214 Identities=32% Similarity=0.555 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776543 46899
Q ss_pred EEcccccc-ccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLL-FSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~L-F~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+ +..|+++|+.++.. ..+ ++++.+.++..++.+. ......+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHH
Confidence 99999987 56899999976421 112 2345566666665433 233445799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhH
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 1118 (1139)
|+++|+||||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+..||+|++|++|++++.|++++
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--------~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR--------DQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999987630 12456999999999998899999999999999999999
Q ss_pred Hhhc
Q 048639 1119 LVAE 1122 (1139)
Q Consensus 1119 Ll~~ 1122 (1139)
+.+.
T Consensus 219 ~~~~ 222 (236)
T TIGR03864 219 LRGA 222 (236)
T ss_pred HHHH
Confidence 9864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=372.86 Aligned_cols=226 Identities=31% Similarity=0.464 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCCChHH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~l~~ 959 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999963 3699999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhhhceEEccccccc-cccHHHHhccCCC--------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 960 LRSQIGLVQQEPLLF-SCSIRNNICYGNE--------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF-~gTIreNL~~~~~--------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+|++++|+||+|.+| ..|+++|+.++.. ...++++.++++.+++.+.+. +.++.. ..+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHH
Confidence 999999999999755 6799999976421 111356788888888865432 123333 457999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+...+.+.|++.. . ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK---------K-DMTIVLVTHFPQQAARISDYVAFLYKGQ 222 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------c-CCEEEEEeCCHHHHHHhcCEEEEEECCe
Confidence 99999999999999999999999999999999999999764 3 3569999999999865 99999999999
Q ss_pred EEEecChhHHhhccCChHHHH
Q 048639 1110 VVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l 1130 (1139)
+++.|+++++.+.+...+.+.
T Consensus 223 i~~~g~~~~~~~~~~~~~~~~ 243 (250)
T PRK14247 223 IVEWGPTREVFTNPRHELTEK 243 (250)
T ss_pred EEEECCHHHHHcCCccHHHHH
Confidence 999999999986644445433
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=369.83 Aligned_cols=213 Identities=28% Similarity=0.485 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 964 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+||++.+|.+ |+++|+.++.+ ... ++++.++++..++.+. ......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 999999999986 99999986422 111 2234555666655443 23344679999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|++|||||||++||+++.+.+.+.|++.. ..++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~---------~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK---------DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 9999999999999999999999999999998764 334569999999988776 999999999999999999
Q ss_pred hHHhh
Q 048639 1117 STLVA 1121 (1139)
Q Consensus 1117 ~eLl~ 1121 (1139)
+++..
T Consensus 218 ~~~~~ 222 (232)
T cd03218 218 EEIAA 222 (232)
T ss_pred HHhhc
Confidence 99874
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=390.25 Aligned_cols=220 Identities=29% Similarity=0.496 Sum_probs=191.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++..++. .|+++
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999953 469999999999999999999999999999999999999999999999999987664 57889
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.+|.. |++||+.++.. ..+ .+++.++++..++.++.++.| .+||||||||++|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999997632 112 346778888888876655544 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++|+||||||+||..+...+.+.|++... ..+.|+|+|||+++.+.. ||||+||++|++++.|+|
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~ 234 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE--------RVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEP 234 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCH
Confidence 99999999999999999999999999988877641 124569999999999765 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++.+++...|.
T Consensus 235 ~~~~~~p~~~~~ 246 (377)
T PRK11607 235 EEIYEHPTTRYS 246 (377)
T ss_pred HHHHhCCccHHH
Confidence 999987766553
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=375.46 Aligned_cols=215 Identities=26% Similarity=0.518 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC-hHHHhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~lR~~i 964 (1139)
|+++||+++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 235999999999999999999999999999999999999999999999999998765 46778899
Q ss_pred eEEccccc--cccccHHHHhccCCCc--CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEPL--LFSCSIRNNICYGNEA--AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp~--LF~gTIreNL~~~~~~--~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+|. ++..|+++|+.++... .+ ++++.++++..++.++.... ...||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999985 5678999999875211 12 34577778888887665443 357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+.+|+||||||||++||+.+...+++.|+++. .+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~---------~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH---------EKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999998764 334569999999999988999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++...
T Consensus 220 ~~~~~~ 225 (274)
T PRK13644 220 ENVLSD 225 (274)
T ss_pred HHHhcC
Confidence 998754
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=358.25 Aligned_cols=219 Identities=31% Similarity=0.550 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc---ccCCCChHHHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNLRRLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~l~~lR 961 (1139)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++.. -.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 3788999999963 46899999999999999999999999999999999999999999999999 7777433 34
Q ss_pred hhceEEcccccccc-ccHHHHhccCCC--------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNE--------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~--------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
++||+|+|+.-||. .||++||.||.+ ...+.++.+.|+.++|..+-++-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999884 699999999862 123456777788888877766655 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
+||||||...|++|+||||.++||..-.+.+.+-|++.. +..+ +|+++|||+.+.+.. ||||+||++|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~-------~~~~-~ttvfVTHD~eea~~ladrvvvl~~G~Ie 217 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH-------DRLG-VTTVFVTHDQEEALELADRVVVLNQGRIE 217 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH-------HhhC-ceEEEEeCCHHHHHhhcceEEEecCCeee
Confidence 999999999999999999999999999999999998764 2224 459999999999876 9999999999999
Q ss_pred EecChhHHhhccCChH
Q 048639 1112 EMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f 1127 (1139)
..|+|+|....|++.|
T Consensus 218 qvg~p~ev~~~P~s~f 233 (345)
T COG1118 218 QVGPPDEVYDHPASRF 233 (345)
T ss_pred eeCCHHHHhcCCCccc
Confidence 9999999998888766
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=371.32 Aligned_cols=217 Identities=30% Similarity=0.562 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 45999999999999999999999999999999999999999999999999998777777788999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCc--cccccCCCCChHHHHHHHHHHHHc
Q 048639 337 AVSQEPSLFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYST--ELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 337 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
|++|++.+|. .|++||+.++... ...++ ....+.+.++.+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEK-----IRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875311 11111 112233455655 4443 456778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999998875 37999999999998765 99999999999999999988754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=363.05 Aligned_cols=204 Identities=26% Similarity=0.442 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEccccccc-cccHHHHhccCC--CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 966 LVQQEPLLF-SCSIRNNICYGN--EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 966 ~V~Qdp~LF-~gTIreNL~~~~--~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
|+||++.+| ..|++||+.++. ...+++++.++++..++.+...+. ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999997642 123567788899999987765432 347999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|++|||||||++||+.+.+.+.+.|++.. +.+.|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLR---------DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 234469999999999876 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=376.44 Aligned_cols=220 Identities=27% Similarity=0.477 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 333 (1139)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999963 246999999999999999999999999999999999999999999999999984 334566788
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
.++|+||+| .+++.|++||+.++.. ..+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 5778899999987532 1222222111 22334444 44445567788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|+.+|++|||||||++||+.+...+.+.++++.+ |+|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999999988753 8999999999999875 9999999999999999999987643
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=368.93 Aligned_cols=216 Identities=25% Similarity=0.462 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcce
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 335 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 45999999999999999999999999999999999999999999999999987766554 35679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+|++|++.+|+. |++||+.++.+. ...++. ...+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKER-----EEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999886 999999875321 111111 11233455555 56666778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998865 47899999999988765 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=367.75 Aligned_cols=240 Identities=27% Similarity=0.428 Sum_probs=199.7
Q ss_pred HHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 230 EIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 230 ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.+++..+++.. +..+.....+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccc---cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555443321 112223344579999999952 35999999999999999999999999999999999999
Q ss_pred CCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc
Q 048639 310 DPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL 389 (1139)
Q Consensus 310 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i 389 (1139)
+|++|+|.++| .|+|++|++++++.|++||+.++... ...++.+.+...++.+.+..+|.++++.+
T Consensus 88 ~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~ 153 (282)
T cd03291 88 EPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVL 153 (282)
T ss_pred CCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhcccccccee
Confidence 99999999988 49999999999999999999986432 23344555666667778889999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 390 GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 390 ~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
++.+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+ +.+.+++|+|++||+++.+..||++++|++
T Consensus 154 ~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~ 233 (282)
T cd03291 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHE 233 (282)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999888754 555568999999999999888999999999
Q ss_pred cEEEEecChhhhhccchHHHHHH
Q 048639 469 GQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 469 G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
|++++.|+++++......+...+
T Consensus 234 G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 234 GSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred CEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999876544454443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=376.48 Aligned_cols=219 Identities=31% Similarity=0.560 Sum_probs=191.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc---cEEEECCcccCCCChHHH
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE---GIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~---G~I~idG~di~~~~l~~l 960 (1139)
+.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999642 2469999999999999999999999999999999999999987 899999999988777788
Q ss_pred hhhceEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 961 RSQIGLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 961 R~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
|++++||||+| .+++.|+++||.++.. ..+. +++.++++.+++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 89999999998 4678899999986522 2233 34778889999887765544 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
++|||||+.+|++|||||||++||+.+...+.+.|++... ..++|||++||+++.+..||||++|++|++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~--------~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK--------KNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999987641 22456999999999998899999999999999
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|++++++..
T Consensus 224 ~g~~~~~~~~ 233 (282)
T PRK13640 224 QGSPVEIFSK 233 (282)
T ss_pred eCCHHHHhcC
Confidence 9999998753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=389.95 Aligned_cols=207 Identities=31% Similarity=0.527 Sum_probs=179.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----hhhceEEcccccccc-c
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL----RSQIGLVQQEPLLFS-C 976 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l----R~~i~~V~Qdp~LF~-g 976 (1139)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998876654 357999999999996 5
Q ss_pred cHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeec
Q 048639 977 SIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDE 1050 (1139)
Q Consensus 977 TIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDE 1050 (1139)
|++||+.++.. ...++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999986421 112356778899999887766554 4799999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhhccCChH
Q 048639 1051 ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1051 aTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~g~f 1127 (1139)
|||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~--------~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQA--------KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHH--------HCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 9999999999999999987630 224569999999999865 99999999999999999999987654444
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=389.97 Aligned_cols=216 Identities=33% Similarity=0.553 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998766543 4689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+||+|++.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 99999998742 11222211 1223344544 45555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988643 7899999999998865 999999999999999999998653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=337.48 Aligned_cols=218 Identities=28% Similarity=0.466 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
+++.+++++|++ ...+++||||++++||+++|.|||||||||+|++|++++.|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999975 3458999999999999999999999999999999999999999999999999865 4567889999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+++-+..|+.. |++|||.|...- ..+.....++...+..+.+ +++..+..+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L---~~l~~~~~kari~~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99988888865 999999975210 1111111223333444444 55566777888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+++||||||+||..+.+.+.+.+.++++ |++||+.||.++.++. ||+++++.+|+++..|+.+++.+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999998875 9999999999999985 99999999999999999998865
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=357.74 Aligned_cols=229 Identities=29% Similarity=0.499 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 256 NIDIRDVCFAYPSRPD---------------------QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~---------------------~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
.|+++||++-|+.++. ..-++|+||+|+.||+..|.|=||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5889999998864321 1248999999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCCHHHHh----cceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCc
Q 048639 315 DILIDSLNIKDLDLKSLR----KNIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYST 387 (1139)
Q Consensus 315 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t 387 (1139)
+|.++|.|+..++.+++| +++++|||+.-|++- ||.||..||.+- ...++- ...+.+.++.. |++-
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er-----~~~a~~~l~~V--gL~~ 156 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAER-----EERALEALELV--GLEG 156 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHH-----HHHHHHHHHHc--Cchh
Confidence 999999999999887664 689999999999975 999999999652 222221 11222334443 4444
Q ss_pred cccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEE
Q 048639 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIA 464 (1139)
Q Consensus 388 ~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~ 464 (1139)
.-...+.+||||+||||.|||||..+|+|||+|||+|||||--+..+++.|.++.+ +||+|+||||+++..+ .|||.
T Consensus 157 ~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 157 YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE
Confidence 45566779999999999999999999999999999999999999999998877653 7999999999999765 99999
Q ss_pred EEeCcEEEEecChhhhhccc--hHHHHHH
Q 048639 465 VVEDGQVTETGTHHSLLQTS--DFYNRLF 491 (1139)
Q Consensus 465 ~l~~G~i~~~g~~~~l~~~~--~~~~~~~ 491 (1139)
+|++|+|+..|+|+|++.++ ++.+.++
T Consensus 237 imkdG~ivQ~Gtp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 237 IMKDGEIVQVGTPEEILLNPANDYVRDFV 265 (386)
T ss_pred EecCCeEEEeCCHHHHHcCccHHHHHHHH
Confidence 99999999999999998753 4444444
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=375.24 Aligned_cols=215 Identities=27% Similarity=0.439 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred eEEcccccccc-ccHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+|+||++.++. .|+++|+.++.. ...++++.++++.+++.++....| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987665 499999986421 112456888899999876655433 36999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+.+|+||||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~--------~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ--------ERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999999987630 224569999999999965 99999999999999
Q ss_pred ecChhHHhh
Q 048639 1113 MGSHSTLVA 1121 (1139)
Q Consensus 1113 ~G~~~eLl~ 1121 (1139)
.|+++++.+
T Consensus 229 ~~~~~~~~~ 237 (265)
T PRK10575 229 QGTPAELMR 237 (265)
T ss_pred ecCHHHhcC
Confidence 999999874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=363.14 Aligned_cols=203 Identities=30% Similarity=0.509 Sum_probs=177.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ .++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccccccccc-cHHHHhccCC-----C-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGN-----E-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~-----~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|.+ |+++|+.+.. + ...++++.++++..++.++.+. .+ .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-------KI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-------ch----hhCCHHHHHHHHHHHH
Confidence 99999999876 9999997531 1 1113567888888888765432 22 4699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|+++|++|||||||++||+.+.+.+.+.|++.. .+ +|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELG---------ED-RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---------CC-CEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999764 33 569999999999975 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=373.90 Aligned_cols=223 Identities=27% Similarity=0.466 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS--LFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+|. ++..|+.|||.++.. ....+++.+.+ .+.++.+ |+.......+..||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-----DEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 567899999987532 22333322211 1223332 3333345567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccch
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 485 (1139)
.+|+++||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++....+
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 99999999999999999999999999988753 799999999999998899999999999999999999876543
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=381.23 Aligned_cols=216 Identities=27% Similarity=0.475 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987644 4578899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||||++.++. .|++||+.+... .....+..+. +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999999886 599999986321 1122222111 12334433 33333455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|++|+|||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999875 48999999999999976 99999999999999999999864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=369.24 Aligned_cols=214 Identities=32% Similarity=0.542 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC--ChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY--NLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~--~l~~lR~~ 963 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred ceEEcccccccc-ccHHHHhccCCC---cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE---AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~---~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
++|+||++.+|. .|+++|+.++.. .. .++++.++++..++.+.... ....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHH
Confidence 999999998885 699999986421 11 12345667777776554433 335799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|||++++|++|+|||||++||+++...+.+.|++.. ++++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 218 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA---------EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeC
Confidence 999999999999999999999999999999998764 334569999999999875 9999999999999999
Q ss_pred ChhHHhhc
Q 048639 1115 SHSTLVAE 1122 (1139)
Q Consensus 1115 ~~~eLl~~ 1122 (1139)
++++++++
T Consensus 219 ~~~~~~~~ 226 (240)
T PRK09493 219 DPQVLIKN 226 (240)
T ss_pred CHHHHhcC
Confidence 99999764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=372.89 Aligned_cols=224 Identities=32% Similarity=0.487 Sum_probs=189.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 956 (1139)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 359999999999999999999999999999999999987 589999999999863 45
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCC--cC---CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AA---SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~---sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
...+|++++|+||+|.+|..|++||+.++.. .. .++++.++++.+++.+.+. ........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 6778899999999999999999999987532 11 2355677788887754332 2233445679999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC---
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--- 1107 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--- 1107 (1139)
|++|||||+++|++|||||||++||+.+...+.+.|++.. .+ +|+|++||+++.+.. ||||++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---------~~-~tiiivtH~~~~~~~~~d~i~~l~~~~~ 231 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK---------KN-FTIVIVTHNMQQAVRVSDMTAFFNAEEV 231 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHHhcCEEEEEecccc
Confidence 9999999999999999999999999999999999999764 33 569999999999876 999999996
Q ss_pred --------CEEEEecChhHHhhccCChH
Q 048639 1108 --------GEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1108 --------G~ive~G~~~eLl~~~~g~f 1127 (1139)
|+++|.|+++++++.+...|
T Consensus 232 ~~~~~g~~g~~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 232 EGGSGGKVGYLVEFNETKKIFNSPKQKA 259 (269)
T ss_pred ccccccccceEEEeCCHHHHHhCcCChH
Confidence 67999999999986544333
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.04 Aligned_cols=208 Identities=33% Similarity=0.531 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH----HH
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK----SL 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 331 (1139)
|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14699999999999999999999999999999999999999999999999998776543 24
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+++++|++|++.+|.. |++||+.++... ....+. ...+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999999876 999999886321 111111 12233455555 5666667778899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEE
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQV 471 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i 471 (1139)
||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 7999999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=371.26 Aligned_cols=216 Identities=34% Similarity=0.533 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC--------h
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN--------L 957 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~--------l 957 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhhhceEEcccccccc-ccHHHHhccCC---CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 958 RRLRSQIGLVQQEPLLFS-CSIRNNICYGN---EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~---~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
..+|++++||||+|.+|. .|+++|+.++. .... ++++.++++..++.+.. .....+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence 467889999999999885 69999997531 1111 23455666666664432 23456899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .+++|+|++||+++.+.. ||+|++|++|
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 220 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA---------QEKRTMVIVTHEMSFARDVADRAIFMDQG 220 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999998764 334569999999999976 9999999999
Q ss_pred EEEEecChhHHhhccC
Q 048639 1109 EVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~~~ 1124 (1139)
++++.|+++++.+.+.
T Consensus 221 ~i~~~~~~~~~~~~~~ 236 (250)
T PRK11264 221 RIVEQGPAKALFADPQ 236 (250)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999999986533
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=366.76 Aligned_cols=214 Identities=28% Similarity=0.486 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---H
Q 048639 256 NIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---L 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 331 (1139)
.++++|++++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997422 146999999999999999999999999999999999999999999999999998776543 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 332 R-KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 332 ~-~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+ +.++|++|++.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999998875 99999987421 11122111 1223445555 555666778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
||++.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 4899999999999998889999999999998775
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=372.67 Aligned_cols=218 Identities=30% Similarity=0.480 Sum_probs=181.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 327 (1139)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999963 3599999999999999999999999999999999999997 48999999998753 33
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---ADDE----QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq 400 (1139)
...++++++|++|++.+|+.|++|||.++... ...+ .+.++++..++. .++.......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALW-------NEVKDKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCc-------hhhHHHHhCCcccCCHHH
Confidence 45678899999999999989999999886321 1111 122222222111 111123455678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999865 99999999999999999999
Q ss_pred hhc
Q 048639 480 LLQ 482 (1139)
Q Consensus 480 l~~ 482 (1139)
+.+
T Consensus 236 ~~~ 238 (254)
T PRK14273 236 LFF 238 (254)
T ss_pred HHh
Confidence 864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=368.24 Aligned_cols=216 Identities=27% Similarity=0.473 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 46999999999999999999999999999999999999999999999999987665543 45899
Q ss_pred EEecCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLF-TGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.++ ..|++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 5699999987532 11122111 1233455555 566667788889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 47999999999999878999999999999999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=365.42 Aligned_cols=211 Identities=24% Similarity=0.456 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 257 IDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
|+++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 169999999999999999999999999999999999999999999999999865 345678899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+|++|++.+|.. |++||+.+... ....++..+ .+.+.++.+ |++......+.+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999885 99999976421 111222111 223445555 55556677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 48999999999998875 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=377.58 Aligned_cols=218 Identities=31% Similarity=0.543 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChH
Q 048639 885 RIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~ 958 (1139)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhhhceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHH
Q 048639 959 RLRSQIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
..|+.++|+||+| .+|..|+++|+.++.. ..+ ++.+.++++.+++. ++.. .....|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-----------KSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-----------CCcccCCHHH
Confidence 6788999999998 5788899999976421 122 23456677777774 3322 2345799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. +.++|||++||+++.+.. ||+|++|++|
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~---------~~g~tvlivsH~~~~~~~~~d~v~~l~~G 221 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ---------KAGHTVILVTHNMDDVAEYADDVLVLEHG 221 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999764 345679999999999875 9999999999
Q ss_pred EEEEecChhHHhhc
Q 048639 1109 EVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~ 1122 (1139)
++++.|+++++.+.
T Consensus 222 ~i~~~g~~~~~~~~ 235 (287)
T PRK13641 222 KLIKHASPKEIFSD 235 (287)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998753
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=372.78 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCCCC--hH
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKEYN--LR 958 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~~--l~ 958 (1139)
-+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|++. |.+|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 46999999999987643 34
Q ss_pred HHhhhceEEccccccccccHHHHhccCCC--c------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNE--A------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
.+|++++|+||++.+|.+|+++|+.++.. . ..++++.++++..++.+++. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999986411 1 12345778888888865432 123344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+.+.+.+.|++.. + ++|+|+|||+++.+.. ||||++|++|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~-~~tiiiisH~~~~~~~~~d~i~~l~~G~ 225 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK---------K-NFTIIVVTHSMKQAKKVSDRVAFFQSGR 225 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEeCCHHHHHhhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 3 3569999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChH
Q 048639 1110 VVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f 1127 (1139)
+++.|+++++.+.+...|
T Consensus 226 i~~~~~~~~~~~~~~~~~ 243 (251)
T PRK14244 226 IVEYNTTQEIFKNPQSSK 243 (251)
T ss_pred EEEeCCHHHHhcCCCChH
Confidence 999999999987655544
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=372.61 Aligned_cols=221 Identities=30% Similarity=0.443 Sum_probs=189.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 956 (1139)
..|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999953 469999999999999999999999999999999999997 479999999999864 34
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCC--c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
...+|+.++||||++.+|..|+++|+.++.. . ..++++.++++..++.+.+.. ........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence 5678899999999999999999999986421 1 123456778888888655432 2345567899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||+||||||+++|++|||||||++||+.+...+.+.|++.. . ++|+|+|||+++.+.. ||+|++|++|
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~-~~tiii~tH~~~~~~~~~d~i~~l~~G 238 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK---------K-NYTIIIVTHNMQQAARASDYTAFFYLG 238 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------c-CCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999764 3 3569999999999866 9999999999
Q ss_pred EEEEecChhHHhhccC
Q 048639 1109 EVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~~~ 1124 (1139)
++++.|+++++.+.+.
T Consensus 239 ~i~~~g~~~~~~~~~~ 254 (267)
T PRK14237 239 DLIEYDKTRNIFTNPK 254 (267)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999999986533
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=372.20 Aligned_cols=221 Identities=28% Similarity=0.499 Sum_probs=191.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccccccccc-cHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
|+||++.+|.+ |+++|++++.. ...++++.++++..++.++.+.. ...||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHH
Confidence 99999998876 99999987521 11234577788888887654432 3579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
||||++++|++|||||||++||+++.+.+.+.|++.. ..++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~---------~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN---------TQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999999999999999999999999999999998764 234569999999999876 999999999999999
Q ss_pred cChhHHhhccCChHHHHH
Q 048639 1114 GSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f~~l~ 1131 (1139)
|+++++... ..+.+.+
T Consensus 220 ~~~~~~~~~--~~~~~~~ 235 (255)
T PRK11231 220 GTPEEVMTP--GLLRTVF 235 (255)
T ss_pred cCHHHhcCH--HHHHHHh
Confidence 999998753 3445544
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=373.32 Aligned_cols=220 Identities=34% Similarity=0.494 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4999999999963 469999999999999999999999999999999999865 689999999999865 344
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC---c----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE---A----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~---~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||++.+|.+|+++|+.++.. . ..++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999986421 1 11345677777777753221 122344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+...+.+.|++.. .+ +|||++||+++.+.. ||||++|++|+
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiii~tH~~~~~~~~~d~v~~l~~G~ 240 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK---------EE-YSIIIVTHNMQQALRVSDRTAFFLNGD 240 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh---------cC-CEEEEEEeCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 569999999998875 99999999999
Q ss_pred EEEecChhHHhhccC
Q 048639 1110 VVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~ 1124 (1139)
+++.|+++++.+++.
T Consensus 241 i~~~~~~~~~~~~~~ 255 (268)
T PRK14248 241 LVEYDQTEQIFTSPK 255 (268)
T ss_pred EEEeCCHHHHHhCCC
Confidence 999999999986543
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=371.46 Aligned_cols=223 Identities=35% Similarity=0.504 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 957 (1139)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999998653 24
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
..+|++++|+||++.+|..|+++|+.++.. ..+ ++++.++++.+++.+.+. +.+++ ....|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS----PALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----ChhhCCHHHHH
Confidence 467889999999999999999999986421 112 234677888888754321 12333 34579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+.+|+||||||||++||+++...+.+.|++.. + ++|+|++||+++.+.+ ||||++|++|++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~---------~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK---------K-DYTIVIVTHNMQQAARISDYTGFFLMGEL 231 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---------h-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999764 3 3569999999999876 999999999999
Q ss_pred EEecChhHHhhccCChH
Q 048639 1111 VEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f 1127 (1139)
++.|+++++.+++...|
T Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (258)
T PRK14268 232 IEFGQTRQIFHNPREKS 248 (258)
T ss_pred EEeCCHHHHhcCCCCHH
Confidence 99999999986644444
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=357.42 Aligned_cols=200 Identities=34% Similarity=0.570 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 257 IDIRDVCFAYPSRPD--QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~--~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+|++|+|.+|+.|++||+.++.. ...++..++++...+.+++..+|.|+++.+++++.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3345566667777778889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH-HHHHHc-CCCeEEEEecCccchhccCEEEEEeCcE
Q 048639 415 PILLLDEATSALDSESEKLVQE-ALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
+++||||||++||+++.+.+.+ .+.... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 455553 4789999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=370.38 Aligned_cols=220 Identities=34% Similarity=0.544 Sum_probs=183.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 369999999999999999999999999999999999986 589999999998853 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkq 402 (1139)
...++++|+|++|++.+|+.|++||+.++.. ..+.++..+ .+.+.++.+ ..++....++.+.+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE-----RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHH-----HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 5677889999999999999999999987532 112221111 112223332 111234456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778899999999999865 9999999999999999999886
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
.
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=373.67 Aligned_cols=218 Identities=29% Similarity=0.524 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++|++++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 23599999999999999999999999999999999999999999999999999888888899999
Q ss_pred eEEccccc--cccccHHHHhccCCCc--C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEPL--LFSCSIRNNICYGNEA--A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp~--LF~gTIreNL~~~~~~--~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||+|. ++..|+++|+.++... . .++++.++++..++.++.+. ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 4566899999765211 1 23456777888887655433 2357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
||++.+|++|||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+..||||++|++|++++.|++
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--------~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~ 226 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS--------EHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTP 226 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999987641 224569999999999988999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.++
T Consensus 227 ~~~~~~ 232 (269)
T PRK13648 227 TEIFDH 232 (269)
T ss_pred HHHhcC
Confidence 999764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=371.12 Aligned_cols=224 Identities=34% Similarity=0.496 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 369999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|+.++|++|++.+|+.|+++|+.++.. ...++++.++++..+++... ++.++ ....+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLD----RNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhc----cChhhCCHHHH
Confidence 567889999999999999999999986421 11234567778887775321 11222 34568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|++|||||||++||+++...+.+.|++.. .+ +|+|+|||+++.+.. ||||++|++|+
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK---------HQ-YTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH---------cC-CeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 569999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChHH
Q 048639 1110 VVEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~ 1128 (1139)
+++.|+++++...+.-.|.
T Consensus 224 i~~~~~~~~~~~~~~~~~~ 242 (251)
T PRK14251 224 LIEAGPTEEMFIAPKKQIT 242 (251)
T ss_pred EEEeCCHHHHHhCCCCHHH
Confidence 9999999999865444444
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=364.74 Aligned_cols=207 Identities=29% Similarity=0.490 Sum_probs=174.5
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 146999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -hhceEEcccccccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 -SQIGLVQQEPLLFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 -~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++++|+||+|.+|. .|++||+.++.. .. .++++.++++..++.+.... ....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 67999999999985 699999976311 11 13356677777777654433 2357999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~iv 1111 (1139)
+|||||+++|+||||||||++||+++...+.+.|++... ..++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR--------ELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999987640 2245699999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=368.51 Aligned_cols=214 Identities=31% Similarity=0.502 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC------CCChHH
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK------EYNLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~------~~~l~~ 959 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 36999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhhhceEEccccccccc-cHHHHhccCC---CcC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 960 LRSQIGLVQQEPLLFSC-SIRNNICYGN---EAA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~g-TIreNL~~~~---~~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
+|++++|+||+|.+|.+ |+++|+.++. ... ..+++.++++..++.++.... ..+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence 78899999999999975 9999997421 011 123456667777776554443 3579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++||||++++|+||||||||++||+++...+.+.|++.. ..++|+|++||+++.+.. ||+|++|++|++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA---------ETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999764 334569999999999976 999999999999
Q ss_pred EEecChhHHhhc
Q 048639 1111 VEMGSHSTLVAE 1122 (1139)
Q Consensus 1111 ve~G~~~eLl~~ 1122 (1139)
++.|+++++.+.
T Consensus 220 ~~~~~~~~~~~~ 231 (242)
T PRK11124 220 VEQGDASCFTQP 231 (242)
T ss_pred EEeCCHHHhcCc
Confidence 999999998653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=372.99 Aligned_cols=221 Identities=31% Similarity=0.510 Sum_probs=183.0
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--C
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--L 326 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~ 326 (1139)
.+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHhcCCC--CC--CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHH
Q 048639 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA--DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 327 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~--~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGq 400 (1139)
+...+|+.++|++|++.+|+.|++||+.++.. .. ...+..+ .+.+.++.+ ++.+....+..+.+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE-----IVETSLRKAGLWEEVKDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH-----HHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence 45567889999999999998899999987531 10 1111111 112223332 1111224466788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988768899999999999865 99999999999999999988
Q ss_pred hhc
Q 048639 480 LLQ 482 (1139)
Q Consensus 480 l~~ 482 (1139)
+..
T Consensus 249 ~~~ 251 (267)
T PRK14235 249 MFT 251 (267)
T ss_pred HHh
Confidence 754
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.91 Aligned_cols=205 Identities=33% Similarity=0.483 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH----H
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR----L 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~----l 960 (1139)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 146999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hhhceEEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 961 RSQIGLVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
|++++|+||+|.+|.+ |+++|+.++.. .. .++++.++++..++.+.... ...+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence 6789999999999976 99999987421 11 23457777888877655433 2357999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccC-CCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA-SRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~-~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
+|||||+++|+||||||||++||+.+.+.+.+.|++.. + .++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---------~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELN---------KEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999999764 2 24569999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=369.67 Aligned_cols=222 Identities=33% Similarity=0.501 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc---ccC--CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF---YDP--NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl---~~p--~~G~I~idG~di~~~--~l 957 (1139)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999997 444 589999999998754 34
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|..|+++|+.++.. ...+++++++++.+++.+++.. .....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence 677889999999999999999999976421 1123457778888887654432 22344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+.+.+.+.|++.. ++ +|||++||+++.+.. ||||++|++|+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK---------KD-YTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------cC-CeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 459999999999865 99999999999
Q ss_pred EEEecChhHHhhccCCh
Q 048639 1110 VVEMGSHSTLVAESQGV 1126 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~ 1126 (1139)
+++.|+++++.+++...
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (250)
T PRK14245 223 MVEYDDTKKIFTNPEKE 239 (250)
T ss_pred EEEECCHHHHhcCCCCh
Confidence 99999999998654433
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=370.97 Aligned_cols=223 Identities=30% Similarity=0.443 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--P---NEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~l 957 (1139)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999997 3 58999999999864 345
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--c-CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|.+|+++|+.++.. . .+ ++++.++++..++.+++.. .......+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHH
Confidence 678899999999999999999999976421 1 12 2345667777777654321 22334567999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+...+.+.|++.. . ++|+|+|||+++.+.. ||||++|++|+
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~-~~tiiivtH~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK---------E-KYTIVIVTHNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---------c-CCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 3 3469999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChH
Q 048639 1110 VVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f 1127 (1139)
+++.|+++++.+++...|
T Consensus 232 i~~~g~~~~~~~~~~~~~ 249 (259)
T PRK14274 232 LVECNDTNKMFSNPDDQR 249 (259)
T ss_pred EEEECCHHHHhhCCCCHH
Confidence 999999999986644443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=360.48 Aligned_cols=199 Identities=34% Similarity=0.557 Sum_probs=168.3
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 367999999641 469999999999999999999999999999999999999999999999998753 356778999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 338 VSQEP--SLFTGSLMDNIKVGNMDAD--DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 338 v~Q~~--~l~~~ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
++|+| .+++.|++||+.++.+... .+++. +.++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAE---------TVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHH---------HHHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4677899999988643221 12222 334444 344445566779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHH-cCCCeEEEEecCccchhc-cCEEEEEeCcEEE
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERA-MQGRTVILIAHRMSTIVN-ADMIAVVEDGQVT 472 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~ 472 (1139)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 458999999999999875 9999999999974
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=361.52 Aligned_cols=207 Identities=26% Similarity=0.470 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++|+|++ +++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 36999999999999 99999999999999999999999999999999999987765 66788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.+|.. |++||+.+... ....++..+ .+.+.++.+ |++......+.+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA-----RVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986421 111111111 112233333 222233456678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999988767999999999999875 9999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=375.68 Aligned_cols=218 Identities=30% Similarity=0.516 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChHH
Q 048639 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~ 959 (1139)
|+++||+++|+++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhhhceEEcccc--ccccccHHHHhccCCC--cCCHH----HHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 960 LRSQIGLVQQEP--LLFSCSIRNNICYGNE--AASEA----EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 960 lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd~----ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
+|++++|+||+| .+|+.|+++|+.++.. ..+.+ .+.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6888999999986421 12222 34556666666421 112334579999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. +.++|||++||+++.+.. ||+|++|++|++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH---------QSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeccHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999764 334569999999999875 999999999999
Q ss_pred EEecChhHHhhc
Q 048639 1111 VEMGSHSTLVAE 1122 (1139)
Q Consensus 1111 ve~G~~~eLl~~ 1122 (1139)
++.|+++++++.
T Consensus 224 ~~~g~~~~~~~~ 235 (280)
T PRK13649 224 VLSGKPKDIFQD 235 (280)
T ss_pred EEeCCHHHHhcC
Confidence 999999998754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=379.86 Aligned_cols=222 Identities=23% Similarity=0.393 Sum_probs=185.6
Q ss_pred ccEEEEeEEEECCCCC----------CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC
Q 048639 255 GNIDIRDVCFAYPSRP----------DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~----------~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~ 324 (1139)
..|+++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 3589999999996321 246999999999999999999999999999999999999999999999999998
Q ss_pred CCCHH---HHhcceEEEecCC--CCCc-ccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccC
Q 048639 325 DLDLK---SLRKNIGAVSQEP--SLFT-GSLMDNIKVGN----MDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRG 393 (1139)
Q Consensus 325 ~~~~~---~~~~~i~~v~Q~~--~l~~-~ti~~ni~~g~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g 393 (1139)
+.+.+ .+|++|+||+|+| .+++ .||.|||.++. +..+.++..+. +.+.++.+ |++ ......+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYP 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCc
Confidence 87654 3577899999998 4774 69999997531 11233332222 22344444 332 2456778
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
.+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999988753 7899999999999976 99999999999
Q ss_pred EEEecChhhhhcc
Q 048639 471 VTETGTHHSLLQT 483 (1139)
Q Consensus 471 i~~~g~~~~l~~~ 483 (1139)
|++.|+.+++..+
T Consensus 240 ive~g~~~~i~~~ 252 (331)
T PRK15079 240 AVELGTYDEVYHN 252 (331)
T ss_pred EEEEcCHHHHHcC
Confidence 9999999999764
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=375.87 Aligned_cols=221 Identities=30% Similarity=0.521 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHH
Q 048639 256 NIDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~ 329 (1139)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14699999999999999999999999999999999999999999999999988643 245
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHH
Q 048639 330 SLRKNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi 404 (1139)
..++.|+|++|+| .+|..|++|||.++.. ....++..+ .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678899999998 5777899999987532 122222211 123445555 554 345677889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 48999999999999865 99999999999999999998865
Q ss_pred c
Q 048639 483 T 483 (1139)
Q Consensus 483 ~ 483 (1139)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 4
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=370.27 Aligned_cols=221 Identities=33% Similarity=0.472 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--P---NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~--~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 369999999999999999999999999999999999954 6 489999999998643 34
Q ss_pred HHHhhhceEEccccccccccHHHHhccCC---C----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGN---E----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~---~----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++||||+|.+|+.|+++|+.++. + ...++++.++++.+++.+.+.. .......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence 56788999999999999999999998541 1 1123456677888887554322 23344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|++|||||||++||+.+...+.+.|++.. .+ +|+|++||+++.+.. ||||++|++|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK---------DD-YTMLLVTRSMQQASRISDRTGFFLDGD 224 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh---------hC-CeEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 469999999998865 99999999999
Q ss_pred EEEecChhHHhhccCC
Q 048639 1110 VVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g 1125 (1139)
+++.|+++++.+++..
T Consensus 225 i~~~g~~~~~~~~~~~ 240 (252)
T PRK14239 225 LIEYNDTKQMFMNPKH 240 (252)
T ss_pred EEEeCCHHHHHhCCCC
Confidence 9999999999876443
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=371.78 Aligned_cols=227 Identities=32% Similarity=0.452 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH
Q 048639 886 IEFQNIKFNYPSR------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 886 I~~~nvsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~ 959 (1139)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1346999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhhhceEEccccc--cc-cccHHHHhccCC-------CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 960 ---LRSQIGLVQQEPL--LF-SCSIRNNICYGN-------EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 960 ---lR~~i~~V~Qdp~--LF-~gTIreNL~~~~-------~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
+|++++|+||+|. ++ ..|+++|+.+.. +...++++.++++..++.+.. ....+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence 6788999999983 44 479999986421 112234567777777774211 123345799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+.+|+||||||||++||+++...+.+.|+++.. ..++|+|+|||+++.+.. ||+|++|
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tiiivsH~~~~~~~~~d~i~~l 224 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ--------AFGTAYLFITHDLRLVQSFCQRVAVM 224 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEeCCHHHHHHHhcEEEEE
Confidence 9999999999999999999999999999999999999999997641 124569999999999975 9999999
Q ss_pred eCCEEEEecChhHHhhccCChHHHH
Q 048639 1106 DKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
++|++++.|++++++...+..+..+
T Consensus 225 ~~G~i~~~g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 225 DKGQIVEECDVAQLLSFKHPAGRNL 249 (265)
T ss_pred eCCEEEEECCHHHHcCCCCHHHHHH
Confidence 9999999999999987533344434
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=384.43 Aligned_cols=210 Identities=27% Similarity=0.426 Sum_probs=179.5
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc----ccCCCChHHHh----hhceEEccccc
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK----GIKEYNLRRLR----SQIGLVQQEPL 972 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~----di~~~~l~~lR----~~i~~V~Qdp~ 972 (1139)
..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+...+| ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999995 67777665543 57999999999
Q ss_pred ccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 973 LFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 973 LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
+|+ .|+++|+.++.. .. ..+++.++++.++|.++.+..| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987521 11 1345778899999877654433 46999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
||||||||+||+.+...+++.|.+... ..++|+|+|||+++.+.. ||||++|++|++++.|++++++.++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~--------~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~ 257 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQA--------KLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPA 257 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcc
Confidence 999999999999999999999987641 224569999999999865 99999999999999999999997655
Q ss_pred ChHHH
Q 048639 1125 GVYSR 1129 (1139)
Q Consensus 1125 g~f~~ 1129 (1139)
..|.+
T Consensus 258 ~~~~~ 262 (382)
T TIGR03415 258 NDYVA 262 (382)
T ss_pred hHHHH
Confidence 55543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=366.91 Aligned_cols=214 Identities=27% Similarity=0.440 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 963 (1139)
.|+++||+++|++ .++|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|++
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred ceEEccccccccc-cHHHHhccCCCcCCH----HHHHHHHHHc-CchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNEAASE----AEIVEVSKKA-NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~~~sd----~ei~~al~~~-~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
++|+||++.+|.+ |+++|+.++....+. +++.++++.. ++.+. .......||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 9999999999985 999999874321122 2233334333 22221 12234579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|+||||||||++||+++.+.+.+.|++.. ++++|+|++||+++.+.. ||||++|++|++++.|++
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR---------EQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTG 221 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCH
Confidence 9999999999999999999999999999998764 334569999999998765 999999999999999999
Q ss_pred hHHhh
Q 048639 1117 STLVA 1121 (1139)
Q Consensus 1117 ~eLl~ 1121 (1139)
+++.+
T Consensus 222 ~~~~~ 226 (237)
T PRK11614 222 DALLA 226 (237)
T ss_pred HHHhc
Confidence 99974
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=363.11 Aligned_cols=205 Identities=31% Similarity=0.572 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999998765543 56899
Q ss_pred EEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+|. .|+++|+.++.. ...++++.++++..++.++....| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999885 699999986421 112345677788888876654433 4799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|+++|++|||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|+++++|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ--------RLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999987640 124569999999999876 9999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=386.51 Aligned_cols=217 Identities=28% Similarity=0.504 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 459999999999999999999999999999999999999999999999999877654 4678
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
||||+|++.+|+. |++|||.|+.. .....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999975 99999998742 112222211 122344444 4445566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|++||||||||+||+.++..+.+.++++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998887754 37899999999998765 999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=362.77 Aligned_cols=213 Identities=24% Similarity=0.438 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999987653 355678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.+++. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERR-----ERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987421 11111111 1122344444 344444556779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+++||||||++||+.+.+.+.+.|.++. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999998864 3 7899999999999876 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=361.89 Aligned_cols=202 Identities=36% Similarity=0.635 Sum_probs=174.1
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred Ecccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 967 VQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 967 V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
+||+| .++..|+++|+.++.. ..+ ++++.++++..++.++..+. ...||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 3678899999986421 111 34566778888876654433 35799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
|+++|++|||||||++||+++.+.+.+.|++.. .+++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~---------~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLK---------AEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998764 234569999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=362.58 Aligned_cols=202 Identities=34% Similarity=0.549 Sum_probs=175.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 962 (1139)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999877643 4678
Q ss_pred hceEEcccccccc-ccHHHHhccCC------CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGN------EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~------~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+++|+||+|.+|. .|+++|+.++. +...+++++++++..++.++..+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999985 69999998641 1123457888999999877655443 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||||+++|++|||||||++||+.+...+.+.|++.. +.++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN---------KRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999764 234569999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=373.58 Aligned_cols=214 Identities=26% Similarity=0.431 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~~ 963 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 3345678889
Q ss_pred ceEEccccc--cccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEPL--LFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp~--LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
++||||+|. +|..|+.+|+.++.. ..+ .+++.++++..++.++..+ ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHH
Confidence 999999985 577899999976311 112 2346677888888665322 235799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||+.+|+||||||||++||+.+...+.+.|++.. ..++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV---------AQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999764 234569999999999965 9999999999999999
Q ss_pred ChhHHhhc
Q 048639 1115 SHSTLVAE 1122 (1139)
Q Consensus 1115 ~~~eLl~~ 1122 (1139)
+++++...
T Consensus 219 ~~~~~~~~ 226 (271)
T PRK13638 219 APGEVFAC 226 (271)
T ss_pred CHHHHhcC
Confidence 99998754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=368.18 Aligned_cols=224 Identities=33% Similarity=0.524 Sum_probs=189.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 956 (1139)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 3699999999999999999999999999999999999863 68999999999875 35
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCC--c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
...+|++++|+||+|.+|+.|+++|+.++.. . ..++++.++++.+++.+.+.. ........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence 5678899999999999999999999986421 1 123456777788877544321 2233456799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++|||||+.+|++|||||||++||+.+...+.+.|++.. . ++|+|++||+++.+.. ||||++|++|
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~sH~~~~~~~~~d~v~~l~~G 221 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK---------K-DYTIVIVTHNMQQASRISDKTAFFLNG 221 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEEeCHHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999998764 3 3469999999998876 9999999999
Q ss_pred EEEEecChhHHhhccCChH
Q 048639 1109 EVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~~~g~f 1127 (1139)
++++.|+++++..++...+
T Consensus 222 ~i~~~~~~~~~~~~~~~~~ 240 (250)
T PRK14240 222 EIVEFGDTVDLFTNPKDKR 240 (250)
T ss_pred EEEEeCCHHHHHhCCCChH
Confidence 9999999999986544443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=370.65 Aligned_cols=220 Identities=30% Similarity=0.551 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+|. ++..|++||+.++... .+.++... .+.+.++.+ |++......+.+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999875321 12222211 123344444 4444566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 4899999999998878999999999999999999887654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=379.15 Aligned_cols=214 Identities=30% Similarity=0.457 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999998754 35678999
Q ss_pred eEEcccccccc-ccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+||++.+|. .|+++|+.+... ..+. +++.++++.+++.+. +++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-------~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-------ADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-------hcCch----hhCCHHHHHHHHHHH
Confidence 99999998885 699999974211 1222 234556666666443 33333 469999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|++|||||||++||+.+...+.+.|++.. ..++|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---------~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 219 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLL---------ARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRP 219 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999864 334569999999999976 999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.+.
T Consensus 220 ~~~~~~ 225 (303)
T TIGR01288 220 HALIDE 225 (303)
T ss_pred HHHHhh
Confidence 999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=372.95 Aligned_cols=218 Identities=26% Similarity=0.448 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HHh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SLR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 332 (1139)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 4699999999999999999999999999999999999999999999999998766543 356
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
++++|++|++.+|+. |++||+.++... ...++. ...+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLL-----HSTVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999874211 111111 11122334444 4444456677899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999988743 7899999999999876 999999999999999999998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=365.54 Aligned_cols=222 Identities=21% Similarity=0.393 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999987766554 3567
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCC--HHH---HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDAD--DEQ---IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~---~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
++|++|++.+|++ |++||+.++..... ... .........+.+.++.+ |++........+||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999999986 99999988632100 000 00011122234556665 5556667788899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|++.+|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999988778999999999999976 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=365.90 Aligned_cols=218 Identities=27% Similarity=0.426 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999988776543 5778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
++|++|++.+|+. |++||+.++......++..+.+ .+.++.++. +.......+.+||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPR-LHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHH-HHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999975 9999998864322222222111 122222211 12223456779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+|+||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998865 48999999999998765 99999999999999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=362.62 Aligned_cols=203 Identities=31% Similarity=0.529 Sum_probs=175.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh---HHHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL---RRLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR~ 962 (1139)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999987654 34788
Q ss_pred hceEEcccccccc-ccHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+++||||+|.+|. .|+++|+.++.. .. .++++.++++..++.+..++.| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999987 599999986421 11 2346778888888876554433 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
||||+++|+||||||||++||+++.+.+.+.|++.. ++++|+|++||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~---------~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN---------KAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999764 234569999999999986 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.26 Aligned_cols=220 Identities=29% Similarity=0.522 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS--LFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+||+|+|. +++.|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 122222111 122334443 3333455667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+..
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 99999999999999999999999999988753 7999999999999864 9999999999999999999987643
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=371.27 Aligned_cols=221 Identities=33% Similarity=0.498 Sum_probs=189.4
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--C
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--Y 955 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~ 955 (1139)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3699999999999999999999999999999999999884 79999999999875 3
Q ss_pred ChHHHhhhceEEccccccccccHHHHhccCCC--c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
+...+|++++|+||++.+|++|+++|+.++.. . ..++++.++++.+++.+.+.. ..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678899999999999999999999976421 1 113457778888888654432 234456789999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~ 1107 (1139)
||||++|||||+++|+||||||||++||+.+...+.+.|++.. ++ .|+|++||+++.+.. ||||++|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~---------~~-~tiiivtH~~~~~~~~~d~i~~l~~ 242 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK---------SK-YTIVIVTHNMQQAARVSDYTAFMYM 242 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hC-CeEEEEeCCHHHHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999764 33 469999999999875 999999999
Q ss_pred CEEEEecChhHHhhcc
Q 048639 1108 GEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1108 G~ive~G~~~eLl~~~ 1123 (1139)
|++++.|+++++.+++
T Consensus 243 G~i~~~g~~~~~~~~~ 258 (272)
T PRK14236 243 GKLVEYGDTDTLFTSP 258 (272)
T ss_pred CEEEecCCHHHHhcCC
Confidence 9999999999998653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=368.35 Aligned_cols=225 Identities=28% Similarity=0.473 Sum_probs=189.1
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCcccCCC--
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--P---NEGIILIDGKGIKEY-- 955 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~~-- 955 (1139)
.|.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 357999999999963 369999999999999999999999999999999999986 4 589999999998653
Q ss_pred ChHHHhhhceEEcccccccc-ccHHHHhccCCC--c-C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 956 NLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNE--A-A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~--~-~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+...+|++++|+||++.+|. .|+++|+.++.. . . .++++.++++..++.+++... ....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCH
Confidence 44567899999999999987 699999976311 1 1 124567778888876544321 2234568999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|++|||||||++||+.+...+.+.|++.. .+ +|+|++||+++.+.. ||||++|+
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---------~~-~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---------EK-YTIIIVTHNMQQAARVSDYTAFFY 221 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------hC-CcEEEEECCHHHHHhhCCEEEEEE
Confidence 99999999999999999999999999999999999999999874 33 569999999999865 99999999
Q ss_pred CCEEEEecChhHHhhccCChH
Q 048639 1107 KGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl~~~~g~f 1127 (1139)
+|++++.|+++++...+...|
T Consensus 222 ~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14256 222 MGDLVECGETKKIFTTPEKKQ 242 (252)
T ss_pred CCEEEEeCCHHHHHhCCCcHH
Confidence 999999999999986644433
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=380.66 Aligned_cols=229 Identities=25% Similarity=0.425 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcccCCCChHHH
Q 048639 885 RIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~l~~l 960 (1139)
-++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.|+..++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996431 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----hhceEEcccc--cccc-ccHHHHhc----cCCCcCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCC
Q 048639 961 R----SQIGLVQQEP--LLFS-CSIRNNIC----YGNEAASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025 (1139)
Q Consensus 961 R----~~i~~V~Qdp--~LF~-gTIreNL~----~~~~~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1025 (1139)
| ++|+||||+| .++. -|+.+|+. ... ..+. +++.++++.+++.+ +. ..++....+|
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~L 162 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-GMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEF 162 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccC
Confidence 4 4799999999 4543 46777663 221 1222 34566677776632 22 1234556789
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEE
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVV 1104 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~v 1104 (1139)
|||||||++|||||+.+|++||+||||++||..+...|.+.|+++.. ..++|+|+|||+++.+.. ||||+|
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~--------~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR--------EFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999987641 224569999999999975 999999
Q ss_pred EeCCEEEEecChhHHhhccCChHHHH
Q 048639 1105 MDKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1105 l~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
|++|+|+|.|+++++++++...|.+.
T Consensus 235 m~~G~ive~g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 235 MYAGRTMEYGNARDVFYQPSHPYSIG 260 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999999998776667663
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=368.95 Aligned_cols=227 Identities=33% Similarity=0.535 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC---c----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE---A----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~---~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|..|+++|+.++.. . ..++++.++++.+++.+.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999986421 1 123456777888887654322 23345568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+...+.+.|++.. .+ +|+|++||+++.+.. ||+|++|++|+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tili~sH~~~~~~~~~d~i~~l~~G~ 222 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS---------EN-YTIVIVTHNIGQAIRIADYIAFMYRGE 222 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh---------cC-cEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 569999999998765 99999999999
Q ss_pred EEEecChhHHhhccCChHHHHH
Q 048639 1110 VVEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l~ 1131 (1139)
+++.|+++++.+++...|.+.+
T Consensus 223 i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14262 223 LIEYGPTREIVERPKNKLTEEY 244 (250)
T ss_pred EEEecCHHHHHhCCCChHHHHH
Confidence 9999999999865444455433
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=365.08 Aligned_cols=207 Identities=33% Similarity=0.507 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996411 1469999999999999999999999999999999999999999999999998863 46789
Q ss_pred eEEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||+|.+|. .|+++|+.++.. ...++++.++++..++.++..+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 112456788888888876655443 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe--CCEEEEec
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD--KGEVVEMG 1114 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G 1114 (1139)
||+++|++|||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|+ +|++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~--------~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR--------ETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--------HcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 99999999999999999999999999999987530 224569999999998865 99999999 79999987
Q ss_pred Ch
Q 048639 1115 SH 1116 (1139)
Q Consensus 1115 ~~ 1116 (1139)
+.
T Consensus 217 ~~ 218 (220)
T cd03293 217 EV 218 (220)
T ss_pred Ee
Confidence 64
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=367.16 Aligned_cols=212 Identities=25% Similarity=0.447 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~i 964 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 369999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred eEEccccccccc-cHHHHhccCCCc--------------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEA--------------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~--------------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+|+||++.+|.+ |+++|+.++... ..++++.++++..++.+.. ......|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEA-----------DRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHH
Confidence 999999999986 999999874210 1234566677776664432 23345799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++||||++++|++|||||||++||+++.+.+.+.|++.. .+ .|+|++||+++.+.. ||+|++|++|
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sH~~~~~~~~~d~i~~l~~g 218 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA---------GK-HSVVVVEHDMEFVRSIADKVTVLHQG 218 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh---------cC-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999864 33 469999999999976 9999999999
Q ss_pred EEEEecChhHHhh
Q 048639 1109 EVVEMGSHSTLVA 1121 (1139)
Q Consensus 1109 ~ive~G~~~eLl~ 1121 (1139)
++++.|+++++..
T Consensus 219 ~~~~~~~~~~~~~ 231 (242)
T TIGR03411 219 SVLAEGSLDQVQA 231 (242)
T ss_pred eEEeeCCHHHHhc
Confidence 9999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=367.68 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC--CHHHHhcc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL--DLKSLRKN 334 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~ 334 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4699999999999999999999999999999999999999999999999998764 33566789
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
++|++|++.++. .|++||+.++.. .....+.. ..+.+.++.+ |++......+..||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999999886 599999987531 11122111 1223455555 566666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999999975 99999999999999999988754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=376.35 Aligned_cols=221 Identities=29% Similarity=0.515 Sum_probs=182.8
Q ss_pred cccEEEEeEEEECCCCC--CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC----C-
Q 048639 883 KGRIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE----Y- 955 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~----~- 955 (1139)
.+.|+++|++++|++++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997432 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred ChHHHhhhceEEcccc--ccccccHHHHhccCCC--cCCH----HHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCC
Q 048639 956 NLRRLRSQIGLVQQEP--LLFSCSIRNNICYGNE--AASE----AEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp--~LF~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
+...+|++++|+||+| .+|..|+++|+.++.. .... +++.++++..++. ++ .......||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~~LS 152 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDY-----------VKRSPFELS 152 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hcCChhhCC
Confidence 4567888999999998 4778899999986421 1222 2344555555552 22 223346799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++... ..++|||+|||+++.+.. ||+|++|
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tiiiisH~~~~~~~~~d~i~~l 224 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK--------EYKKRIIMVTHNMDQVLRIADEVIVM 224 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999987641 224569999999998865 9999999
Q ss_pred eCCEEEEecChhHHhhc
Q 048639 1106 DKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~ 1122 (1139)
++|++++.|+++++.+.
T Consensus 225 ~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 225 HEGKVISIGSPFEIFSN 241 (289)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999988653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=371.69 Aligned_cols=229 Identities=29% Similarity=0.442 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH
Q 048639 256 NIDIRDVCFAYPSR------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~ 329 (1139)
.|+++|++|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 135699999999999999999999999999999999999999999999999998876554
Q ss_pred ---HHhcceEEEecCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChH
Q 048639 330 ---SLRKNIGAVSQEPS--LF-TGSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGG 399 (1139)
Q Consensus 330 ---~~~~~i~~v~Q~~~--l~-~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgG 399 (1139)
.+++.|+|++|++. ++ ..|++||+.++.. ....++ ....+.+.++.+ |++ ......+.+||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgG 154 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGG 154 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHH
Confidence 35778999999983 44 3699999975321 111111 112233455555 454 3456788899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 400 qkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999988753 7999999999999975 99999999999999999
Q ss_pred hhhhhcc-chHHHHHH
Q 048639 477 HHSLLQT-SDFYNRLF 491 (1139)
Q Consensus 477 ~~~l~~~-~~~~~~~~ 491 (1139)
++++... ++.++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 235 VAQLLSFKHPAGRNLQ 250 (265)
T ss_pred HHHHcCCCCHHHHHHH
Confidence 9999763 33444443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=370.28 Aligned_cols=220 Identities=29% Similarity=0.494 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCC--CCCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIK--DLDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 328 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHHhcceEEEecCCCCCcc-cHHHHHhcCCC--C--CCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTG-SLMDNIKVGNM--D--ADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~--~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqk 401 (1139)
..++++++|++|++.+|.. |++||+.++.. . ...++..+. +.+.++.+ ...+.......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER-----VEWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH-----HHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 5678899999999999975 99999987531 1 011221111 11223332 11112335667889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999875 999999999999999999988
Q ss_pred hcc
Q 048639 481 LQT 483 (1139)
Q Consensus 481 ~~~ 483 (1139)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.00 Aligned_cols=220 Identities=30% Similarity=0.536 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHHH
Q 048639 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLKS 330 (1139)
Q Consensus 257 i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 330 (1139)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999988653 3456
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHH
Q 048639 331 LRKNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 331 ~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~ 405 (1139)
+++.|+|++|++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |++ ......+.+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 6788899999987531 1222222211 22344444 443 2456778899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 47899999999999865 999999999999999999988653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=379.11 Aligned_cols=229 Identities=23% Similarity=0.393 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEECCcccCCCChHHH
Q 048639 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----PNEGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~~~l~~l 960 (1139)
|+++||+++|+.+.. .++|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974322 369999999999999999999999999999999999997 489999999999999887765
Q ss_pred hh----hceEEccccc--ccc-ccHHH----HhccCC--C-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 961 RS----QIGLVQQEPL--LFS-CSIRN----NICYGN--E-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 961 R~----~i~~V~Qdp~--LF~-gTIre----NL~~~~--~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
|+ +++||||+|. ++. -|+.+ |+.... . ....+++.++++.+++.+.... ......+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhCC
Confidence 54 6999999995 332 35554 443321 1 1224567888999998643211 223446799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.. +.++|+|+|||+++.+.. ||||+||
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~--------~~g~til~iTHdl~~~~~~adri~vm 227 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ--------KENMALVLITHDLALVAEAAHKIIVM 227 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999998641 224569999999999865 9999999
Q ss_pred eCCEEEEecChhHHhhccCChHHHH
Q 048639 1106 DKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
++|+|+|.|+++++++++...|.+.
T Consensus 228 ~~G~ive~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 228 YAGQVVETGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCEEEEECCHHHHhhCCCChHHHH
Confidence 9999999999999998766667544
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=374.34 Aligned_cols=215 Identities=29% Similarity=0.464 Sum_probs=178.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----hc
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL----RK 333 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~ 333 (1139)
.++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888853 459999999999999999999999999999999999999999999999999877665443 46
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+++|++|++.+|+ .|++||+.++.. .....+.. ..+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999985 599999987521 11111111 1122344444 444445666779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+.+|++|||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999998874 37999999999998865 99999999999999999998865
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=349.33 Aligned_cols=178 Identities=37% Similarity=0.677 Sum_probs=164.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999743 23699999999999999999999999999999999999999999999999987655 556788999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++++|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 458999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEec
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 475 (1139)
+||||||++||+.+++.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998887789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=384.53 Aligned_cols=213 Identities=33% Similarity=0.536 Sum_probs=177.5
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----hcceEEEecCCCCCc-c
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL----RKNIGAVSQEPSLFT-G 347 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~-~ 347 (1139)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++++||+|++.+|+ .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 468999999999997 4
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 048639 348 SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~ 425 (1139)
|++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~-----~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERR-----EKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999998632 11111111 1223445554 555556677889999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc--hHHHHHHh
Q 048639 426 LDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS--DFYNRLFT 492 (1139)
Q Consensus 426 LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~--~~~~~~~~ 492 (1139)
||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.... .+.+.++.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 99999999999998874 48999999999999865 9999999999999999999987643 33444443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=359.06 Aligned_cols=203 Identities=26% Similarity=0.454 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
||+|++.++. .|++||+.++.. ....+++.+++ +.+ |++......+.+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVL---------DVV--GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHH---------HHc--CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 699999987531 12223333333 333 333344566779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 48999999999999875 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.20 Aligned_cols=218 Identities=26% Similarity=0.499 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC-HHHHhcce
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-LKSLRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i 335 (1139)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 245999999999999999999999999999999999999999999999999987664 35677899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |++......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999886321 12222221 122334444 4555566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|+++||||||++||+.++..+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998865 48999999999999977999999999999999999987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=362.38 Aligned_cols=209 Identities=29% Similarity=0.507 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 246999999999999999999999999999999999999999999999999987766543 33
Q ss_pred -cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 333 -KNIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 333 -~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+.++|++|++.+|+ .|++||+.++.. .....+.. ..+.+.++.+ |++......+..||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 599999987421 11111111 1123445555 5555667778899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEE
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVT 472 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 472 (1139)
||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||++++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998874 378999999999998889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=362.26 Aligned_cols=199 Identities=32% Similarity=0.558 Sum_probs=171.0
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 36999999999999999999999999999999999999999999999998764 47889999
Q ss_pred Ecccccc---ccccHHHHhccCCCc----------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 967 VQQEPLL---FSCSIRNNICYGNEA----------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 967 V~Qdp~L---F~gTIreNL~~~~~~----------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+||+|.+ |..|++||+.++... ..++++.++++..++.++..+. ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999976 568999999864321 1235678888888887665432 247999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|++|||||||++||+++.+.+.+.|++.. +.++|+|+|||+++.+.. ||+|++|++| +++
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR---------REGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 99999999999999999999999999999999999764 234569999999999976 9999999986 566
Q ss_pred ec
Q 048639 1113 MG 1114 (1139)
Q Consensus 1113 ~G 1114 (1139)
.|
T Consensus 212 ~g 213 (213)
T cd03235 212 SG 213 (213)
T ss_pred cC
Confidence 54
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=366.92 Aligned_cols=206 Identities=29% Similarity=0.420 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 36999999999999999999999999999999999999999999999998753 467889
Q ss_pred eEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
+|+||+|.+|. .|++||+.++.....++++.++++..++.++... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999875322235678888999888765433 23579999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
++|||||||++||+.+...+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~--------~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQ--------QHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999987530 224469999999999865 9999999999999988764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.53 Aligned_cols=221 Identities=27% Similarity=0.498 Sum_probs=186.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc---cEEEECCccCCCCCHHHH
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN---GDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 331 (1139)
..|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999998 899999999987777777
Q ss_pred hcceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 332 RKNIGAVSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 332 ~~~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+++++||+|+|. +++.|++|||.++... .+.++..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la 155 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA 155 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence 889999999984 5678999999876322 22222211 122334444 444456667789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+.+|++|||||||++||+.++..+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988753 7999999999999877999999999999999999988653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=373.21 Aligned_cols=222 Identities=27% Similarity=0.502 Sum_probs=182.9
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC----C-C
Q 048639 255 GNIDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD----L-D 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~-~ 327 (1139)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997432 1359999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHHhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkq 402 (1139)
...+|+.|+|++|+| .+++.|++||+.++.. ....++..+. +.+.++.+ ++. ......+.+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788999999998 4677899999987632 1222222221 12233333 331 2346678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999998864 37899999999998865 99999999999999999988
Q ss_pred hhcc
Q 048639 480 LLQT 483 (1139)
Q Consensus 480 l~~~ 483 (1139)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 8654
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=372.17 Aligned_cols=222 Identities=28% Similarity=0.484 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC-HHHH
Q 048639 256 NIDIRDVCFAYPSRP---DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-LKSL 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~---~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 331 (1139)
.++++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 246999999999999999999999999999999999999999999999999987543 3557
Q ss_pred hcceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 332 RKNIGAVSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 332 ~~~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
++.++|+||+|. ++..|+.+|+.++... ....+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6667999999986321 12222111 122334433 444455666789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEV 235 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcCh
Confidence 99999999999999999999999999999998874 389999999999998789999999999999999999987643
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=378.14 Aligned_cols=216 Identities=28% Similarity=0.467 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 5899999999963 4599999999999999999999999999999999999999999999999988653 34568899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+|+||++.++. .|++||+.+... ..+..+..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 599999975211 12222222211 2233333 34444556677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|+++||||||++||+.+...+.+.++++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998874 48999999999999976 99999999999999999998854
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=369.26 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC--------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-------- 327 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-------- 327 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999963 35999999999999999999999999999999999999999999999999886432
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
...+++.++||+|++.+++ .|++||+.++.. ....++.. ..+.+.++.+ |++......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456788999999999886 599999986421 11121111 1123445555 55555667889999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 48999999999999876 9999999999999999998875
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
+
T Consensus 233 ~ 233 (250)
T PRK11264 233 A 233 (250)
T ss_pred c
Confidence 4
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=364.95 Aligned_cols=214 Identities=34% Similarity=0.543 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999963 369999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEccccccccc-cHHHHhccCC------CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGN------EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~------~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|.+ |+++|+.++. +...++++.++++..++.++....| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999997532 1223456778888888877766554 4799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+++|++|||||||++||+.+.+.+.+.|++... ..++|+|+++|+++.+.. ||+|++|++|++++.|+++
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--------~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~ 216 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK--------ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999987640 124569999999999876 9999999999999999999
Q ss_pred HHhhcc
Q 048639 1118 TLVAES 1123 (1139)
Q Consensus 1118 eLl~~~ 1123 (1139)
++.+.+
T Consensus 217 ~~~~~~ 222 (232)
T cd03300 217 EIYEEP 222 (232)
T ss_pred HHHhCC
Confidence 998653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=380.21 Aligned_cols=216 Identities=28% Similarity=0.488 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 45999999999999999999999999999999999999999999999999987543 4678899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
||+||++.++. .|++||+.+... .....+..+. +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999875 599999985321 1122222111 12233333 33334455667999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998875 48999999999999976 99999999999999999999864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=368.90 Aligned_cols=213 Identities=24% Similarity=0.454 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEccccc-cccccHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 966 LVQQEPL-LFSCSIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 966 ~V~Qdp~-LF~gTIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
|+||++. .+..|+++|+.++.. ...++++.++++.+++.+..++ ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 9999985 456899999976521 0123467788888888665433 23579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
||||++.+|+++||||||++||+.+...+.+.|++.. .+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA---------ATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 9999999999999999999999999999999999764 334569999999999965 999999999999999
Q ss_pred cChhHHhh
Q 048639 1114 GSHSTLVA 1121 (1139)
Q Consensus 1114 G~~~eLl~ 1121 (1139)
|+++++.+
T Consensus 219 g~~~~~~~ 226 (256)
T TIGR03873 219 GPPREVLT 226 (256)
T ss_pred cCHHHhhC
Confidence 99999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=369.84 Aligned_cols=225 Identities=27% Similarity=0.447 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 4699999999999999999999999999999999999999999999999998877777888899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+|++|++.++.. |+.||+.++.... ..... ...+.+.++.+ |+.........+||||||||++|||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~lar 160 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD-----REKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAM 160 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHH
Confidence 999999877665 9999998763210 00100 01112233333 3333345556789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccch
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 485 (1139)
||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++... .
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~-~ 239 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG-E 239 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCH-H
Confidence 9999999999999999999999999999998874 37999999999999865 999999999999999999888653 3
Q ss_pred HHHHHH
Q 048639 486 FYNRLF 491 (1139)
Q Consensus 486 ~~~~~~ 491 (1139)
.+..++
T Consensus 240 ~~~~~~ 245 (265)
T PRK10575 240 TLEQIY 245 (265)
T ss_pred HHHHHh
Confidence 334443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=370.88 Aligned_cols=221 Identities=31% Similarity=0.503 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~ 956 (1139)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 369999999999999999999999999999999999997 689999999999864 34
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCC-----CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGN-----EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-----~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
...+|++++||||++.+|..|+++|+.++. +...+++++++++..++...+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 567889999999999999899999998642 11124567888888887544321 123445689999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEE-EEeCCE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIV-VMDKGE 1109 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~-vl~~G~ 1109 (1139)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++. ++ .|+|+++|+++.+.. |||++ +|++|+
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~---------~~-~tiii~tH~~~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA---------EE-YTVVIVTHNMQQAARISDKTAVFLTGGE 257 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHhhcCEEEEEeeCCE
Confidence 9999999999999999999999999999999999999875 33 469999999999876 99975 579999
Q ss_pred EEEecChhHHhhccC
Q 048639 1110 VVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~ 1124 (1139)
|++.|+++++.+++.
T Consensus 258 i~~~g~~~~~~~~~~ 272 (285)
T PRK14254 258 LVEFDDTDKIFENPE 272 (285)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999986543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=362.79 Aligned_cols=209 Identities=33% Similarity=0.513 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 1469999999999999999999999999999999999999999999999998753 35789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+||+|++.+|+ .|++||+.++.. ....++. ...+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999987 599999987531 1111111 11223445555 45555566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEe--CcEEEEecCh
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVE--DGQVTETGTH 477 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 477 (1139)
+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998863 37899999999998865 99999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=367.71 Aligned_cols=220 Identities=28% Similarity=0.483 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCCCHHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 330 (1139)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4599999999999999999999999999999999999974 6999999999998777778
Q ss_pred HhcceEEEecCCCCC-cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHHH
Q 048639 331 LRKNIGAVSQEPSLF-TGSLMDNIKVGNMD----ADDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~----~~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkqR 403 (1139)
+++.|+|++|++.++ ..|++||+.++... ....+.. ..+.+.++.+. +.........+.+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ-----ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHH-----HHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 889999999999765 56999999875321 0111111 11223344331 111233466778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999998864
Q ss_pred c
Q 048639 483 T 483 (1139)
Q Consensus 483 ~ 483 (1139)
.
T Consensus 235 ~ 235 (250)
T PRK14247 235 N 235 (250)
T ss_pred C
Confidence 3
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.49 Aligned_cols=222 Identities=30% Similarity=0.487 Sum_probs=188.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~ 956 (1139)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999963 3599999999999999999999999999999999999985 48999999999864 44
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCC------CcCC-HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGN------EAAS-EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~------~~~s-d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
...+|++++|+||+|.+|+.|+++|+.++. +... ++.+.++++.+++++++... + ...+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHH
Confidence 567888999999999999999999997642 1111 24467788888886554322 2 33456799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe--
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD-- 1106 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~-- 1106 (1139)
|||+||||||+++|++|||||||++||+.+...+.+.|++.. .+ +|+|++||+++.+.. ||++++|+
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiii~tH~~~~i~~~~d~i~~l~~~ 225 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR---------SE-LTIAIVTHNMQQATRVSDFTAFFSTD 225 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHHhcCeEEEEecc
Confidence 999999999999999999999999999999999999999764 33 469999999999976 99999998
Q ss_pred ---CCEEEEecChhHHhhccCC
Q 048639 1107 ---KGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1107 ---~G~ive~G~~~eLl~~~~g 1125 (1139)
+|++++.|+++++.+++..
T Consensus 226 ~~~~G~i~~~~~~~~~~~~~~~ 247 (259)
T PRK14260 226 ESRIGQMVEFGVTTQIFSNPLD 247 (259)
T ss_pred CCCCceEEEeCCHHHHhcCCCC
Confidence 5999999999999865443
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=369.99 Aligned_cols=215 Identities=28% Similarity=0.466 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999888888888999
Q ss_pred eEEcccccccc-ccHHHHhccCC-C---------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGN-E---------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~-~---------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+|+||++.+|. .|+++|+.++. + ...+++++++++..++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 69999998642 1 1123467888888888765433 2357999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+||||++++|++|||||||++||+.+...+.+.|+++.. ..++|+|+++|+++.+.. ||+|++|++|++++
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~--------~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR--------EKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987641 124569999999998876 99999999999999
Q ss_pred ecChhHHhh
Q 048639 1113 MGSHSTLVA 1121 (1139)
Q Consensus 1113 ~G~~~eLl~ 1121 (1139)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (265)
T PRK10253 225 QGAPKEIVT 233 (265)
T ss_pred eCCHHHHhh
Confidence 999999875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=368.25 Aligned_cols=221 Identities=30% Similarity=0.495 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999743 24699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEecCCC-CC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 GAVSQEPS-LF-TGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~~v~Q~~~-l~-~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+|++|+|. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.......+.+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 56899999886321 12222211 122233433 3333455677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999988743 78999999999998779999999999999999999886543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=358.89 Aligned_cols=211 Identities=31% Similarity=0.486 Sum_probs=186.7
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh----HHHhh
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL----RRLRS 962 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l----~~lR~ 962 (1139)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
.++|++|+|.+|+.|+++|+.++.+ ..+++.+++++..++.+.+..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998643 456677888999999999999999999999988899999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHH--HHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCE
Q 048639 1043 PAIMLLDEATSALDAESERVIVS--ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~--~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ 1109 (1139)
|++|||||||++||+.+...+.+ .++... ..+.|+|++||+++.+..||+|++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~---------~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQ---------DDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHh---------cCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 444432 23456999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=361.02 Aligned_cols=205 Identities=29% Similarity=0.464 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH---HHhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR---RLRS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~---~lR~ 962 (1139)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999877654 3688
Q ss_pred hceEEcccccc-ccccHHHHhccCC--CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLL-FSCSIRNNICYGN--EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~L-F~gTIreNL~~~~--~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+++|+||+|.+ +..|+++|+.++. ...+ ++++.++++..++.+...+. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence 99999999987 4679999998642 1122 23466778888877655433 35799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
|||++++|++|||||||++||+.+.+.+.+.|++.. .+++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN---------RVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999764 334569999999999987 89999999999864
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=365.27 Aligned_cols=212 Identities=29% Similarity=0.494 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcce
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 335 (1139)
|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999973 46999999999999999999999999999999999999999999999999988776544 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+|++|++.+|+. |++||+.++.... ..++. ..+.++.+ +++.........+||||||||++|||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 9999998763221 11111 11222222 112334566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 149 RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999988753 7899999999999986 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=365.53 Aligned_cols=217 Identities=28% Similarity=0.473 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999963 46999999999999999999999999999999999999999999999999987776544 5678
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
++|++|++.++.. |++||+.++... .+.++ ....+.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875311 11111 112234556665 555566778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+.+|++|||||||++||+.+...+.+.+..+. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998765 48999999999988865 99999999999999999998864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=366.95 Aligned_cols=228 Identities=31% Similarity=0.456 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
...|++++|+||+|.+|+.|+++|+.++.. . ..++++.++++.+++.+.+. +..+..+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 677889999999999999999999987521 0 11335667777777654332 234455678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++||||++.+|++|||||||++||+.+.+.+.+.|++.. .+ +|+|++||+++.+.. ||+|++|++|+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---------~~-~tvii~sh~~~~~~~~~d~v~~l~~G~ 225 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---------KE-YTVIIVTHNMQQAARVSDYTGFMYLGK 225 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------hC-ceEEEEEcCHHHHHhhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 569999999999975 99999999999
Q ss_pred EEEecChhHHhhccCChHHHHHH
Q 048639 1110 VVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
+++.|+++++..++...+.+.+.
T Consensus 226 i~~~g~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14261 226 LIEFDKTTQIFENPHEELTENYI 248 (253)
T ss_pred EEEcCCHHHHHhCCCcHHHHHHh
Confidence 99999999998665445555443
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=366.04 Aligned_cols=224 Identities=33% Similarity=0.499 Sum_probs=191.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999975 389999999999875 345
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--cC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|.+|+++|+.++.. .. .++++.++++.+++.+++..+ + ...+..||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHH
Confidence 678999999999999999999999986421 11 224567788888987765432 2 344568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||+||||||+++|+||||||||++||+.+...+.+.|++.. . ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---------~-~~tiii~sh~~~~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK---------E-DYTIVIVTHNMQQATRVSKYTSFFLNGE 222 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEECCHHHHHhhcCEEEEEECCe
Confidence 99999999999999999999999999999999999999764 3 3469999999999887 89999999999
Q ss_pred EEEecChhHHhhccCChHH
Q 048639 1110 VVEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~ 1128 (1139)
+++.|+++++...+.+.|.
T Consensus 223 i~~~g~~~~~~~~~~~~~~ 241 (250)
T PRK14266 223 IIESGLTDQIFINPKDKRT 241 (250)
T ss_pred EEEeCCHHHHHhCCCChHH
Confidence 9999999999876556554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.61 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-----EGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~~--~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999987 69999999998643 45
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--c-C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|+.++||||+|.+|+.|+++|+.++.. . . .++.+.++++.+++++.+.. .....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 1 12345666777777654432 23445678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|++|||||||++||+.+...+.+.|++.. . ++|||++||+++.+.+ ||+|++|++|+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~-~~tilivsh~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK---------Q-NYTIAIVTHNMQQAARASDWTGFLLTGD 223 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------c-CCEEEEEeCCHHHHHhhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999998753 2 3469999999999987 89999999999
Q ss_pred EEEecChhHHhhcc
Q 048639 1110 VVEMGSHSTLVAES 1123 (1139)
Q Consensus 1110 ive~G~~~eLl~~~ 1123 (1139)
+++.|+++++...+
T Consensus 224 i~~~~~~~~~~~~~ 237 (251)
T PRK14249 224 LVEYGRTGEIFSRP 237 (251)
T ss_pred EEEeCCHHHHHhCC
Confidence 99999999997653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=381.20 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=172.9
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc----cCCCCCHHHH---h-cceEEEecCCC
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL----NIKDLDLKSL---R-KNIGAVSQEPS 343 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---~-~~i~~v~Q~~~ 343 (1139)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666655443 3 58999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 344 LFT-GSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 344 l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|+ .|++||+.++... ...++. ...+.+.++.+ |++......+.+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 6999999987421 112211 11223445554 4555556677899999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+||+.++..+++.+.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999988753 7999999999999865 999999999999999999999754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=369.20 Aligned_cols=218 Identities=33% Similarity=0.528 Sum_probs=182.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 459999999999999999999999999999999999987 699999999998853 45
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC--CCH---HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--ADD---EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkq 402 (1139)
...+|+.++|++|++.+|..|++||+.++... ... +++.++++..+ +..++.......+.+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAA-------VWDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhC-------CcchhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999986421 111 11122222111 1122334456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeC-----------cE
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVED-----------GQ 470 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~-----------G~ 470 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988778999999999999865 999999996 67
Q ss_pred EEEecChhhhhc
Q 048639 471 VTETGTHHSLLQ 482 (1139)
Q Consensus 471 i~~~g~~~~l~~ 482 (1139)
+++.|+++++..
T Consensus 242 ~~~~~~~~~~~~ 253 (269)
T PRK14259 242 LVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHHHHHh
Confidence 899999998864
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=368.18 Aligned_cols=219 Identities=32% Similarity=0.516 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC--C---CccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--P---SNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 328 (1139)
.|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 459999999999999999999999999999999999997 3 69999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++|++|++.+|+.|++||+.++... ...++..+ .+.+.++.+ .+.+.......+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQE-----IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 5678899999999999989999999875321 11222111 111223332 1111234567788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999988778999999999999875 99999999999999999998864
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=367.58 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999986 379999999998853 455
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCc-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
..+|++++|+||++.+|+.|+++|+.++... ..++++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999989999999875321 123456677888888765532 1234456899999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe-----
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD----- 1106 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~----- 1106 (1139)
++|||||+++|+||||||||++||+.+...+.+.|++.. .+ +|||++||+++.+.. ||||++|+
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---------~~-~tvi~vtH~~~~~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK---------EQ-YTIIIVTHNMQQAARVSDMTAFFNVELTE 229 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------cC-CEEEEEecCHHHHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999764 33 469999999999876 99999998
Q ss_pred ----CCEEEEecChhHHhhccCC
Q 048639 1107 ----KGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1107 ----~G~ive~G~~~eLl~~~~g 1125 (1139)
+|++++.|+++++.+++..
T Consensus 230 ~~~~~g~i~~~~~~~~~~~~~~~ 252 (264)
T PRK14243 230 GGGRYGYLVEFDRTEKIFNSPQQ 252 (264)
T ss_pred ccccCceEEEeCCHHHHHhCCCc
Confidence 8999999999999865443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.29 Aligned_cols=224 Identities=26% Similarity=0.468 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
|++|++.++.+ |++||+.++.... ..++. ...+.+.++.+ |++......+..||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 99999998876 9999999863210 00110 11112233333 33344556778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchHH
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFY 487 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 487 (1139)
++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++... ..+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-~~~ 231 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP-GLL 231 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH-HHH
Confidence 999999999999999999999999999998865 48999999999999875 999999999999999999988653 344
Q ss_pred HHHH
Q 048639 488 NRLF 491 (1139)
Q Consensus 488 ~~~~ 491 (1139)
.+.+
T Consensus 232 ~~~~ 235 (255)
T PRK11231 232 RTVF 235 (255)
T ss_pred HHHh
Confidence 5554
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=379.76 Aligned_cols=214 Identities=29% Similarity=0.463 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred eEEccccccc-cccHHHHhccCCC--cCCH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLF-SCSIRNNICYGNE--AASE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF-~gTIreNL~~~~~--~~sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+||++.+| ..|++||+.+... ..+. +.+.++++.+++.+ ..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-------~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999886 5699999975321 1122 23445566666543 344444 469999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|++|||||||++||+.+...+++.|+++. ..++|||++||+++.+.. ||+|++|++|++++.|++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~---------~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~ 256 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLL---------ARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRP 256 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999874 334569999999999976 999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++.++
T Consensus 257 ~~l~~~ 262 (340)
T PRK13536 257 HALIDE 262 (340)
T ss_pred HHHHhh
Confidence 999754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=363.31 Aligned_cols=214 Identities=28% Similarity=0.430 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 964 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred eEEccccccccc-cHHHHhccCCCc--CCHH-HHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEA--ASEA-EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~--~sd~-ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+|+||++.+|.. |+++|+.++... ..++ ...++++..+ +++.........||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 999999865321 1112 2233344432 1222233445679999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
++|++|||||||++||+.+.+.+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA--------EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--------cCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999997641 124569999999999986 999999999999999999998
Q ss_pred h
Q 048639 1120 V 1120 (1139)
Q Consensus 1120 l 1120 (1139)
.
T Consensus 220 ~ 220 (230)
T TIGR03410 220 D 220 (230)
T ss_pred C
Confidence 3
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=364.67 Aligned_cols=205 Identities=32% Similarity=0.517 Sum_probs=175.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999963 46999999999999999999999999999999999999999999999997653 45778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
++|++|++.+++ .|++||+.++.....++++ .+.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA---------LQALAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHH---------HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 5999999986422111222 2334444 444455677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChh
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 478 (1139)
|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998863 37899999999999865 9999999999999888654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=359.71 Aligned_cols=207 Identities=33% Similarity=0.568 Sum_probs=173.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 3699999999999999999999999999999999999999999999999998665432 46899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.++. .|++||+.++.. ....++..+ .+.+.++.+ |++......+.+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 599999987532 112222111 122334444 445556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998874 37999999999999876 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=362.32 Aligned_cols=213 Identities=33% Similarity=0.530 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 369999999999999999999999999999999999999999999999999886553 478899
Q ss_pred EEccccccccc-cHHHHhccCCC--c----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE--A----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~--~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|++ |+++|+.++.. . ..++++.++++..++.++.++. ..+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999986432 1 1234567788888886655443 24799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+++|+++||||||++||+++.+.+.+.|++.. ...++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--------~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 216 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH--------DEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPD 216 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--------HhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998754 0214569999999999876 9999999999999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
++++.
T Consensus 217 ~~~~~ 221 (237)
T TIGR00968 217 EVYDH 221 (237)
T ss_pred HHHcC
Confidence 99854
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.80 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 964 (1139)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 889999999963 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred eEEcccccccc-ccHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+|+||++.+|. .|++||+.++.. ..+ ++.+.+.++..++.+ ........||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHHH
Confidence 99999999887 599999986421 112 223455555555443 23344568999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|++|||||||++||+.+...+.+.+++.. ..++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 220 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR---------DSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGT 220 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------hcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCC
Confidence 99999999999999999999999999999998764 234569999999987765 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
++++++.
T Consensus 221 ~~~~~~~ 227 (241)
T PRK10895 221 PTEILQD 227 (241)
T ss_pred HHHHhcC
Confidence 9998753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=370.48 Aligned_cols=215 Identities=33% Similarity=0.551 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC--CChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--YNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~~ 963 (1139)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2369999999999999999999999999999999999999999999999999853 234567899
Q ss_pred ceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
++|+||+| .+|..|+++|+.++.. ..+ .+++.++++.+++.++.+. . ...||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHH
Confidence 99999998 5788999999976421 112 2457778888888654332 2 34799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||+++|++|||||||++||+.+...+.+.|+++. +.++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~---------~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN---------KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999764 334569999999999875 9999999999999999
Q ss_pred ChhHHhhc
Q 048639 1115 SHSTLVAE 1122 (1139)
Q Consensus 1115 ~~~eLl~~ 1122 (1139)
+++++++.
T Consensus 220 ~~~~~~~~ 227 (275)
T PRK13639 220 TPKEVFSD 227 (275)
T ss_pred CHHHHhcC
Confidence 99998753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=368.83 Aligned_cols=223 Identities=30% Similarity=0.457 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 355
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--cCC-----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AAS-----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~s-----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|..|+++|+.++.. ..+ ++.+.++++..++.+.+ .......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 111 22345556666553322 2233445678999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|+||||||||++||+.+...+.+.|+++. ++ +|+|+++|+++.+.. ||||++|++|+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiiivsH~~~~i~~~~d~i~~l~~G~ 243 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK---------KD-YSIIIVTHNMQQAARISDKTAFFLNGY 243 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH---------cC-CEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998764 33 569999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChH
Q 048639 1110 VVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f 1127 (1139)
+++.|+++++.+++...|
T Consensus 244 i~~~g~~~~~~~~~~~~~ 261 (271)
T PRK14238 244 VNEYDDTDKIFSNPSDKR 261 (271)
T ss_pred EEEeCCHHHHHcCCCCHH
Confidence 999999999986644333
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=368.25 Aligned_cols=224 Identities=32% Similarity=0.512 Sum_probs=189.8
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCcccCC--CC
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-----EGIILIDGKGIKE--YN 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~ 956 (1139)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 35999999999999999999999999999999999999985 8999999999853 34
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCC------CcCC-HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGN------EAAS-EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~------~~~s-d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
...+|+.++|+||++.+|..|++||+.++. +... ++++.++++.+++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 557889999999999999999999997641 1111 3456778888888665542 2234556899999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC-
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK- 1107 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~- 1107 (1139)
|||++|||||+++|++|||||||++||+++...+.+.|++.. ...++|+|+|||+++.+.. ||+|++|++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~--------~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLR--------LRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--------HhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 999999999999999999999999999999999999998753 0224569999999999876 999999999
Q ss_pred ----CEEEEecChhHHhhccCC
Q 048639 1108 ----GEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1108 ----G~ive~G~~~eLl~~~~g 1125 (1139)
|++++.|+++++.+++..
T Consensus 228 ~~~~G~i~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNSPHD 249 (261)
T ss_pred CCcCceEEEeCCHHHHHhCCCC
Confidence 999999999999876544
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=368.56 Aligned_cols=231 Identities=27% Similarity=0.429 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCC------CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH
Q 048639 885 RIEFQNIKFNYPSR------PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~ 958 (1139)
.|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124699999999999999999999999999999999999999999999999999765666
Q ss_pred HHhhhceEEccccc--ccc-ccHHHHhccCC-------CcCCHHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCCh
Q 048639 959 RLRSQIGLVQQEPL--LFS-CSIRNNICYGN-------EAASEAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~--LF~-gTIreNL~~~~-------~~~sd~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
..+++++|+||+|. ++. -|+.+|+.+.. +...++++.++++.+++. +.... ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 66778999999985 443 38888876421 111235678889999884 33222 2247999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|+||||||||++||+++.+.+.+.|++... ..++|||+|||+++.+.. ||+|++|+
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tviivsH~~~~~~~~~d~i~~l~ 224 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE--------KQGISYIYVTQHLGMMKHISDQVLVMH 224 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------HcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999997640 224569999999999987 99999999
Q ss_pred CCEEEEecChhHHhhcc-CChHHHHHHHH
Q 048639 1107 KGEVVEMGSHSTLVAES-QGVYSRLYQLQ 1134 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl~~~-~g~f~~l~~~~ 1134 (1139)
+|++++.|+++++.+.+ ...+++++...
T Consensus 225 ~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 225 QGEVVERGSTADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CCEEEecCCHHHHhcCCCCHHHHHHHHhc
Confidence 99999999999998754 34566777643
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=368.31 Aligned_cols=218 Identities=29% Similarity=0.520 Sum_probs=183.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC--------
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL-------- 326 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~-------- 326 (1139)
+.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999987532
Q ss_pred -----CHHHHhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccc-cccCCCC
Q 048639 327 -----DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTEL-GQRGVQL 396 (1139)
Q Consensus 327 -----~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i-~~~g~~L 396 (1139)
....+++.++|+||++.+++. |++||+.++.. .....+. ...+.+.++.+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEA-----RERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHc--CCChhhhhCCcccC
Confidence 134567899999999999975 99999986421 1111111 11223455555 454443 6678899
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEe
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~ 474 (1139)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 48999999999999986 999999999999999
Q ss_pred cChhhhhc
Q 048639 475 GTHHSLLQ 482 (1139)
Q Consensus 475 g~~~~l~~ 482 (1139)
|+++++.+
T Consensus 234 ~~~~~~~~ 241 (257)
T PRK10619 234 GAPEQLFG 241 (257)
T ss_pred CCHHHhhh
Confidence 99998764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.96 Aligned_cols=219 Identities=32% Similarity=0.525 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 328 (1139)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4599999999999999999999999999999999999985 899999999988643 23
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
..+++.++|++|++.+|+.|++||+.++.. ....++..+ .+.+.++.+. ..........+.+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 456788999999999999999999987531 112222111 1222333331 1112345667889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999988678999999999999865 99999999999999999998864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=368.00 Aligned_cols=217 Identities=29% Similarity=0.500 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---------
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD--------- 327 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--------- 327 (1139)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999886542
Q ss_pred ----HHHHhcceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChH
Q 048639 328 ----LKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG 399 (1139)
Q Consensus 328 ----~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgG 399 (1139)
...+++.++|++|++.+|. .|+.||+.++.. ....++.. ..+.+.++.+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356789999999999886 699999987521 11122111 1233455655 5555667788899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 400 qkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988643 7899999999999865 99999999999999999
Q ss_pred hhhhhcc
Q 048639 477 HHSLLQT 483 (1139)
Q Consensus 477 ~~~l~~~ 483 (1139)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9988643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=365.08 Aligned_cols=219 Identities=34% Similarity=0.507 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 957 (1139)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--cC-C----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AA-S----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~-s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||++.+|..|+++|+.++.. .. + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999986421 11 1 2456778888887544322 12334567999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++||||++++|+||||||||++||+.+...+.+.|++.. ++ +|+|+|||+++.+.. ||||++|++|+
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~---------~~-~tiiivsH~~~~~~~~~d~v~~l~~G~ 223 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK---------KE-YTIVIVTHNMQQASRVSDYTAFFLMGD 223 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hC-CeEEEEEcCHHHHHHhcCEEEEEECCe
Confidence 99999999999999999999999999999999999999764 33 569999999999876 99999999999
Q ss_pred EEEecChhHHhhcc
Q 048639 1110 VVEMGSHSTLVAES 1123 (1139)
Q Consensus 1110 ive~G~~~eLl~~~ 1123 (1139)
+++.|+++++...+
T Consensus 224 i~~~~~~~~~~~~~ 237 (251)
T PRK14270 224 LIEFNKTEKIFLEP 237 (251)
T ss_pred EEEeCCHHHHhcCC
Confidence 99999999998653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=359.35 Aligned_cols=205 Identities=33% Similarity=0.621 Sum_probs=172.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 338 VSQEPS--LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 338 v~Q~~~--l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
++|++. +++.|++||+.++... ....+..+ .+.+.++.+ |++......+.+||||||||++|||||+.+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5678999999875321 11211111 122344444 444555677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998875 48999999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=367.93 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHhcc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLRKN 334 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~ 334 (1139)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 45999999999999999999999999999999999999999999999999984 2344567789
Q ss_pred eEEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEPS--LFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
|+||+|++. ++..|+.+|+.++.. ....++..+. +.+.++.+ |+.......+.+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 566789999987421 1122222111 12233333 333334556789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 48899999999999865 999999999999999999887654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=364.67 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC------CCCHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK------DLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~------~~~~~ 329 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 45999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~ 405 (1139)
.++++++|++|++.+|.. |++||+.++.. ....++. ...+.+.++.+ |++..+...+.+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA-----LARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 667899999999999875 99999975311 1112211 11234455655 5666677778899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
||||++.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 48999999999999875 99999999999999999887643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=366.64 Aligned_cols=222 Identities=25% Similarity=0.452 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999887765544 456
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADD----------EQI--YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~----------~~~--~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
++|++|++.+|.. |++||+.++...... ... ........+.+.++.+ |++......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999986321000 000 0001112233456665 566667888899999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 478 (1139)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988743 7899999999999876 9999999999999999998
Q ss_pred hhhc
Q 048639 479 SLLQ 482 (1139)
Q Consensus 479 ~l~~ 482 (1139)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=368.69 Aligned_cols=220 Identities=30% Similarity=0.515 Sum_probs=181.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35999999999963 469999999999999999999999999999999999864 799999999998864 33
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkq 402 (1139)
...++++++|++|++.+|+.|++||+.++... . ......+ .+.+.+..+. .++....+..+.+|||||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE-----IVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 44677899999999999999999999875311 1 1111111 1112222221 11123356778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 9999999999999999998876
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
.
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 4
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=369.76 Aligned_cols=221 Identities=32% Similarity=0.523 Sum_probs=183.0
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--C
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--L 326 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~ 326 (1139)
.+.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 3699999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHH
Q 048639 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 327 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqk 401 (1139)
+...+++.++|++|++.+|+.|++||+.++.. .. ..+...+. +.+.++.+ ++...+..+..+.+||||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA-----VERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 45567889999999999998899999987532 11 11111111 11222222 11122345677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+++|+++||||||++||+.++..+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999887
Q ss_pred hc
Q 048639 481 LQ 482 (1139)
Q Consensus 481 ~~ 482 (1139)
..
T Consensus 255 ~~ 256 (272)
T PRK14236 255 FT 256 (272)
T ss_pred hc
Confidence 64
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=361.46 Aligned_cols=210 Identities=28% Similarity=0.420 Sum_probs=179.4
Q ss_pred cEEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---H
Q 048639 885 RIEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---L 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---l 960 (1139)
.|+++||+++|++... .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 35999999999999999999999999999999999999999999999999998877653 3
Q ss_pred -hhhceEEccccccccc-cHHHHhccCC---C---cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 961 -RSQIGLVQQEPLLFSC-SIRNNICYGN---E---AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 961 -R~~i~~V~Qdp~LF~g-TIreNL~~~~---~---~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
+++++|+||+|.+|.. |+++|+.++. . ....+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999875 9999997531 1 112456788888988877665443 4699999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
++|||||+++|++|||||||++||+++.+.+.+.|++... ..++|||+|||+++.+..||+|++|++|+++|
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR--------EHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999987630 22456999999999998899999999999987
Q ss_pred e
Q 048639 1113 M 1113 (1139)
Q Consensus 1113 ~ 1113 (1139)
.
T Consensus 227 ~ 227 (228)
T PRK10584 227 E 227 (228)
T ss_pred c
Confidence 4
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.12 Aligned_cols=219 Identities=32% Similarity=0.553 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-----ccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 328 (1139)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 45999999999999999999999999999999999999997 69999999988643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHH--hCCCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--AD-DEQIYNASMMANAHSFIS--QLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~-~~~~~~~~~~~~~~~~i~--~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++||+|++.+|+.|++||+.++... .. .++..+.+. +.+. .+.+.+.......+.+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE-----KSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHH-----HHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 5678899999999999989999999876321 11 111111111 1112 122222344567888999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668999999999999876 89999999999999999998754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.10 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 328 (1139)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 3599999999999999999999999999999999999763 69999999998864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+|+.++|++|++.+|+.|++||+.++... . ..++..+. +.+.++.+ .+++.......+.+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-----VEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 5678899999999999989999999876311 1 11111111 11222222 1122234566788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999998866 99999999999999999988754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.45 Aligned_cols=215 Identities=21% Similarity=0.416 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||++.++.. |++||+.+... ....++..+ .+++.++.+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999976321 111121111 123455555 566667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||||++|++|+++..|+++++.+
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999988778999999999999876 99999999999999999999854
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=346.77 Aligned_cols=178 Identities=38% Similarity=0.665 Sum_probs=163.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|+++ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999743 23699999999999999999999999999999999999999999999999988766 567889999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|+||+|.+|+.|+++|+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 357999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEec
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1114 (1139)
|||||||++||+.+.+.+.+.|++.. + ++|+|+++|+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVL---------K-DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHc---------C-CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998764 3 35699999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=367.17 Aligned_cols=216 Identities=23% Similarity=0.415 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~ 963 (1139)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876654 456
Q ss_pred ceEEccccccccc-cHHHHhccCCCc---------------C--C----HHHHHHHHHHcCchHHHhhCCCCccccccCC
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNEA---------------A--S----EAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~~---------------~--s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~ 1021 (1139)
++|+||+|.+|.+ |+++|+.++... . . .+++.++++..++.+ .....
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 9999999999985 999999874210 0 0 123444455555543 33444
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CC
Q 048639 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD 1100 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~D 1100 (1139)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++... +.++|||++||+++.+.+ ||
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--------~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN--------EHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh--------hcCCEEEEEeCCHHHHHHhCC
Confidence 568999999999999999999999999999999999999999999987641 224569999999999976 99
Q ss_pred EEEEEeCCEEEEecChhHHhhc
Q 048639 1101 VIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1101 rI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
+|++|++|++++.|+++++.++
T Consensus 223 ~i~~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 223 RIYVVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred EEEEEECCeEEecCCHHHHhhC
Confidence 9999999999999999998753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=365.39 Aligned_cols=215 Identities=27% Similarity=0.464 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccccc-ccccHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLL-FSCSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~L-F~gTIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+ +..|++||+.++... ..++++.++++..++.++..+. ...||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99999987 678999999875211 1234577888888887654332 35799999999999999
Q ss_pred hc------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1039 LL------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1039 Ll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
|+ .+|++|||||||++||+.+.+.+.+.|++... ..++|||++||+++.+.. ||+|++|++|+++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH--------ERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 99 59999999999999999999999999987530 123469999999999875 9999999999999
Q ss_pred EecChhHHhhc
Q 048639 1112 EMGSHSTLVAE 1122 (1139)
Q Consensus 1112 e~G~~~eLl~~ 1122 (1139)
+.|+++++.+.
T Consensus 221 ~~~~~~~~~~~ 231 (258)
T PRK13548 221 ADGTPAEVLTP 231 (258)
T ss_pred eeCCHHHHhCh
Confidence 99999998753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=361.71 Aligned_cols=213 Identities=30% Similarity=0.484 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHHh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~ 332 (1139)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1269999999999999999999999999999999999999999999999999877663 5677
Q ss_pred cceEEEecCCC--CC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHH
Q 048639 333 KNIGAVSQEPS--LF-TGSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIA 405 (1139)
Q Consensus 333 ~~i~~v~Q~~~--l~-~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~ 405 (1139)
++++|++|++. ++ ..|++||+.++... ...++..+.. +.+.++.+ |+. ......+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 89999999993 44 46999999764211 1111111110 12344554 442 3567778899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 406 IARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 406 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999988753 7999999999999875 9999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=367.00 Aligned_cols=221 Identities=30% Similarity=0.472 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCCC-hH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEYN-LR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~~-l~ 958 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHhhhceEEccccccccccHHHHhccCCC---cCCHHHH----HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNE---AASEAEI----VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~---~~sd~ei----~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+|++++|+||+|.+|..|+++|+.++.. ..+++++ .++++..++.+.. ++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986421 1244333 4456666664432 22334556789999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+++|+||||||||++||+.+.+.+.+.|++.. .+ +|||+|||+++.+.. ||||++|++|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---------~~-~tiiivsH~~~~~~~~~dri~~l~~G~i 240 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---------DR-LTVIIVTHNLAQAARISDRAALFFDGRL 240 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999764 33 569999999999876 999999999999
Q ss_pred EEecChhHHhhccCC
Q 048639 1111 VEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g 1125 (1139)
++.|+++++.+.+..
T Consensus 241 ~~~g~~~~~~~~~~~ 255 (276)
T PRK14271 241 VEEGPTEQLFSSPKH 255 (276)
T ss_pred EEeCCHHHHHhCcCc
Confidence 999999999876433
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=376.81 Aligned_cols=230 Identities=22% Similarity=0.332 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc----CCccEEEECCcccCCCChHH
Q 048639 885 RIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD----PNEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~----p~~G~I~idG~di~~~~l~~ 959 (1139)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++..++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996431 2469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----hhceEEcccccc--c-cccHHHHhccCC------C------cCCHHHHHHHHHHcCchHHHhhCCCCccccccC
Q 048639 960 LR----SQIGLVQQEPLL--F-SCSIRNNICYGN------E------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGE 1020 (1139)
Q Consensus 960 lR----~~i~~V~Qdp~L--F-~gTIreNL~~~~------~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e 1020 (1139)
++ ++|+||||+|.. + ..|+.+|+.... . ...++++.++++.++|.+.-.. + ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hC
Confidence 53 479999999963 3 358888885310 0 0113467888999998643111 1 12
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-C
Q 048639 1021 KGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-S 1099 (1139)
Q Consensus 1021 ~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~ 1099 (1139)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.. ..++|+|+|||+++.+.. |
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~--------~~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ--------NNNTTILLISHDLQMLSQWA 226 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH--------hcCCEEEEEECCHHHHHHhC
Confidence 2357999999999999999999999999999999999999999999998641 124569999999999976 9
Q ss_pred CEEEEEeCCEEEEecChhHHhhccCChHHHH
Q 048639 1100 DVIVVMDKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1100 DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
|||+||++|+|+|.|+++++++++...|.+.
T Consensus 227 dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999999999999998766677653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=371.59 Aligned_cols=217 Identities=29% Similarity=0.527 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ ++.+|+||||++++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ..+.+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 24699999999999999999999999999999999999999999999999988665 66788999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
||+||+|.+++. |++||+.|...- ...+. ....+.+.++.+ |++.....+...||+|||||++||+||+.
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~-----~~~~~~~~l~~~--~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEE-----AEERIEELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHc--CCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 999999998865 999999874210 01000 011122334444 33322256678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-C-CeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ-G-RTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 154 ~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 154 DPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999998765 5 799999999999987 99999999999999999988753
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.23 Aligned_cols=221 Identities=28% Similarity=0.426 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH
Q 048639 256 NIDIRDVCFAYPSRP-------DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-------~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~ 328 (1139)
.|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999987764
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCCh
Q 048639 329 K---SLRKNIGAVSQEPS--LFT-GSLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSG 398 (1139)
Q Consensus 329 ~---~~~~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSg 398 (1139)
. .+|++|+||+|+|. |++ .|+.+|+.... ......+. ...+.+.++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999993 555 48998886421 11122111 12233455554 333 234667889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|||||++|||||+.+|++||+||||++||+.++..+.+.|.++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988753 8999999999999976 9999999999999999
Q ss_pred Chhhhhcc
Q 048639 476 THHSLLQT 483 (1139)
Q Consensus 476 ~~~~l~~~ 483 (1139)
+.+++.++
T Consensus 238 ~~~~~~~~ 245 (327)
T PRK11308 238 TKEQIFNN 245 (327)
T ss_pred CHHHHhcC
Confidence 99999865
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=365.26 Aligned_cols=219 Identities=35% Similarity=0.530 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc---cCC--CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF---YDP--SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 328 (1139)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999963 4599999999999999999999999999999999997 455 589999999998653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--AD-DEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~-~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++|+||++.+|+.|++||+.++... .. .+...+ .+.+.++.+ ++...+...+.+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ-----RVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHH-----HHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875311 11 111111 112333433 2122344567888999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999865 99999999999999999999865
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=364.87 Aligned_cols=217 Identities=26% Similarity=0.435 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4599999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc-
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV- 411 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~- 411 (1139)
+|++|++.+ +..|++||+.++.... ..++.. ..+.+.++.+ |++......+.+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDD-----ALVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999987 5679999998863211 111111 1122334433 4444456677899999999999999999
Q ss_pred -----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 412 -----KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 -----~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999998875 47899999999999875 99999999999999999988765
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=357.56 Aligned_cols=202 Identities=25% Similarity=0.489 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 4678999
Q ss_pred EEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+|.+ |+++|+.++.. .. .++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANK-----------RVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhC-----------cHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999976421 11 13456677777777654432 345799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
|+++|++|||||||++||+.+.+.+.+.|++.. ++++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~---------~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELA---------RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998764 234569999999999876 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=358.54 Aligned_cols=205 Identities=33% Similarity=0.524 Sum_probs=170.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 333 (1139)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
.++|++|++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ-----RRVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 599999987521 11111111 1122334443 333334455679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
+.+|+++||||||++||+.++..+.+.++++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999998864 48999999999999986 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=356.22 Aligned_cols=203 Identities=28% Similarity=0.517 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999632 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccccccccc-cHHHHhccCCC-c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE-A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~-~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|.+ |++||+.++.. . .+++++.++++..++.++..+.| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986531 1 23457888999999987765544 3699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
++++|++|||||||++||+++...+.+.|++... ..++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--------~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA--------ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999997641 224569999999999976 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=366.99 Aligned_cols=220 Identities=31% Similarity=0.480 Sum_probs=183.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999996 589999999998854 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkq 402 (1139)
...+++.|+|++|++.+|..|++||+.++... . ..++..+ .+.+.++.+ .++.++..+..+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE-----IVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCCchhhhhhcCCcccCCHHHHH
Confidence 55678899999999999989999999875321 1 1111111 111223332 111234567788899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+++|+++||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 9999999999999999999886
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
.
T Consensus 251 ~ 251 (267)
T PRK14237 251 T 251 (267)
T ss_pred c
Confidence 4
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=364.09 Aligned_cols=225 Identities=28% Similarity=0.417 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~~--~l 957 (1139)
.+.+++++++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999953 4699999999999999999999999999999999999986 799999999998653 44
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC-----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE-----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
..+|++++|+||+|.+|..|++||+.++.. ...++++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 467889999999999999999999987521 1123578888999988665532 2234566899999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe-----
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD----- 1106 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~----- 1106 (1139)
++|||||+++|+||||||||++||+.+...+.+.|++.. + ++|+|+|||+++.+.. ||||++|+
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~---------~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~ 227 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK---------K-DYTIALVTHNMQQAIRVADTTAFFSVDISQ 227 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEeCCHHHHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999764 3 3569999999999876 99999996
Q ss_pred ---CCEEEEecChhHHhhccCChHHH
Q 048639 1107 ---KGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1107 ---~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
+|++++.|+++++++++...+.+
T Consensus 228 ~~~~G~i~~~g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 228 GTRTGYLVEMGPTAQIFQNPREQLTS 253 (261)
T ss_pred ccCCceEEEeCCHHHHHhCCCcHHHH
Confidence 89999999999998764434443
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=366.26 Aligned_cols=220 Identities=30% Similarity=0.467 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc--CC---CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY--DP---SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~---~~G~i~~~g~~~~~~--~~ 328 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 45999999999999999999999999999999999995 36 599999999988643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCC--CCC-HHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DAD-DEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~-~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++||+|++.+|+.|++||+.++.. ... .+...+. +.+.++.+. .+..+..+..+.+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-----VEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 566788999999999999999999987521 111 1111111 112233331 112234567788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999998865 99999999999999999998864
Q ss_pred c
Q 048639 483 T 483 (1139)
Q Consensus 483 ~ 483 (1139)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 3
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=343.57 Aligned_cols=172 Identities=41% Similarity=0.719 Sum_probs=161.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|++|++.+|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEE
Q 048639 417 LLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQV 471 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i 471 (1139)
+||||||++||+.++..+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 48899999999998877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=380.62 Aligned_cols=214 Identities=30% Similarity=0.500 Sum_probs=186.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChHHHh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~lR 961 (1139)
|++ |++++|.+ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 89999999999999999999999999999999999999999999998653 244568
Q ss_pred hhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 962 SQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++++||||++.+|. .|+++|+.++.....++++.++++..++.++.++.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999996 599999998754445677888999998877665543 479999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
++|++|||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~--------~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAR--------EINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999999999999999999999999987641 224569999999998876 999999999999999999999
Q ss_pred hhccC
Q 048639 1120 VAESQ 1124 (1139)
Q Consensus 1120 l~~~~ 1124 (1139)
.+++.
T Consensus 217 ~~~p~ 221 (352)
T PRK11144 217 WASSA 221 (352)
T ss_pred HhCcc
Confidence 98765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=367.83 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhcc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRKN 334 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 334 (1139)
++++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2469999999999999999999999999999999999999999999999998852 234467889
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
|+|++|++ .+++.|++||+.++.. ....++..+ .+.+.++.+ |+.......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 4778899999987532 112222211 122334444 343444566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+.+|+++||||||++||+.+...+.+.+.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 48999999999999875 999999999999999999988654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=368.92 Aligned_cols=225 Identities=32% Similarity=0.485 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCCC--Ch
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKEY--NL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~--~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 359999999999999999999999999999999999865 4999999999988643 33
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--cC-C----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AA-S----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~-s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++||||+|.+|..|++||+.++.. .. + ++++.++++..++.+.+. +.++ .....||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhhCCHHHH
Confidence 457889999999999998999999986421 11 1 245667777777754322 1223 34567999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+.+|++|||||||++||+++...+.+.|++.. .+ +|||++||+++.+.+ ||||++|++|+
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~---------~~-~tvIivsH~~~~~~~~~d~i~~L~~G~ 258 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR---------GS-YTIMIVTHNMQQASRVSDYTMFFYEGV 258 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------cC-CeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 469999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChHHH
Q 048639 1110 VVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~ 1129 (1139)
+++.|+++++.+++...|.+
T Consensus 259 i~~~g~~~~~~~~~~~~~~~ 278 (286)
T PRK14275 259 LVEHAPTAQLFTNPKDRMTE 278 (286)
T ss_pred EEEeCCHHHHHhCCCcHHHH
Confidence 99999999998764444443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.68 Aligned_cols=211 Identities=29% Similarity=0.462 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 4599999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
+|++|++.+|+.|++||+.++.. ....+ ...+.+.++.+ |+. +.....+.+||||||||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~-------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPD-------PAIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChH-------HHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999998999999986421 01111 01123455555 443 45677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEe-CcEEEEecChh
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVE-DGQVTETGTHH 478 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 478 (1139)
+|+++||||||++||+.+...+.+.+.++. .++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998864 3789999999999998899999995 66777888875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=363.37 Aligned_cols=221 Identities=31% Similarity=0.475 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccC-CCChH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIK-EYNLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~~~l~ 958 (1139)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhhhceEEccccccccccHHHHhccCCC--cC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFSCSIRNNICYGNE--AA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+|+.++|+||+|.+|..|+++|+.++.. .. .++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 78999999999999999999999986421 11 1234566777777765432 2223345679999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|++|||||+.+|+||||||||++||+.+...+.+.|++.. ++ +|+|++||+++.+.. ||||++|++|++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~-~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---------KN-YTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------cC-CeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999864 33 569999999999887 999999999999
Q ss_pred EEecChhHHhhccCC
Q 048639 1111 VEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g 1125 (1139)
++.|+++++.+++..
T Consensus 223 ~~~g~~~~~~~~~~~ 237 (249)
T PRK14253 223 VEHDDTQVIFSNPKD 237 (249)
T ss_pred EEeCCHHHHHcCCCC
Confidence 999999998765433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=366.49 Aligned_cols=217 Identities=34% Similarity=0.518 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 328 (1139)
.|+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 489999999998854 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhCCCCC----CccccccCCCCChHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--AD-DEQIYNASMMANAHSFISQLPDQY----STELGQRGVQLSGGQK 401 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~-~~~~~~~~~~~~~~~~i~~l~~g~----~t~i~~~g~~LSgGqk 401 (1139)
..+++.++|++|++.+|+.|++||+.++... .. .+...+ .+.+.++.+ |+ .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQ-----RVEESLKQA--AIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHH-----HHHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence 5678889999999999999999999875321 11 111111 111223322 22 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999987
Q ss_pred hc
Q 048639 481 LQ 482 (1139)
Q Consensus 481 ~~ 482 (1139)
..
T Consensus 234 ~~ 235 (251)
T PRK14251 234 FI 235 (251)
T ss_pred Hh
Confidence 64
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=358.81 Aligned_cols=211 Identities=31% Similarity=0.530 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+. . ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999963 2 238999999999999999999999999999999999999999999999886654 357899
Q ss_pred EEccccccccc-cHHHHhccCC-Cc-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGN-EA-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~-~~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+|.+ |+++|+.++. +. ..++++.++++.+++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 11 22456888999999988776655 3699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
++++|++|||||||++||+++.+.+.+.|++... ..++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~--------~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 215 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ--------ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTD 215 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999987641 224569999999999876 9999999999999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
++...
T Consensus 216 ~~~~~ 220 (232)
T PRK10771 216 ELLSG 220 (232)
T ss_pred HHHhC
Confidence 99864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=365.98 Aligned_cols=221 Identities=31% Similarity=0.495 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 328 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
..++++++|++|++.+|..|++||+.++.. ...+++..+ ..+.+.++.+ .+++.......+.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 567889999999999998999999987532 111111111 0111222222 11233445677889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988778999999999999875 999999999999999999988653
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=363.07 Aligned_cols=411 Identities=17% Similarity=0.185 Sum_probs=321.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 39 TGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW---------------EVSLLIFLVVPMILVIGATYTKRMN 103 (1139)
Q Consensus 39 ~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------~l~l~~l~~~~~~~~~~~~~~~~~~ 103 (1139)
.|++.|+....+........++.++++++...+++.-++- .+..++++.+++.-++..+++|.+.
T Consensus 152 QRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li 231 (604)
T COG4178 152 QRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLI 231 (604)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccc
Confidence 6999999999998888888888887776665555542211 1223333344444466778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 104 AVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVG 183 (1139)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 183 (1139)
+..-+..+..+..-..+...-.+...|-.|+.|+.+.++.++......+...+..........+......++.++-+.++
T Consensus 232 ~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ 311 (604)
T COG4178 232 RLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIA 311 (604)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhc
Confidence 99888888899999999999999999999999999988877776666554444333332222222223333334444556
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCccCCCCcc---ccCCCc
Q 048639 184 AVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKP-----RISYSSKGKE---LEKIDG 255 (1139)
Q Consensus 184 ~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~-----~~~~~~~~~~---~~~~~~ 255 (1139)
+.....|.++.|.+......+......++.+...+..+..-++...|+.++.+.-+ .......... ....+.
T Consensus 312 ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (604)
T COG4178 312 APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADH 391 (604)
T ss_pred cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccc
Confidence 66678999999999998888888888888888899999999999999998864321 1111110000 011146
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++..-|+. .+.+++.+|++++||.+.|.||||||||||+++|+|++|--+|+|..-. ...+
T Consensus 392 ~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~ 458 (604)
T COG4178 392 GITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSAL 458 (604)
T ss_pred eeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCce
Confidence 79999999998754 4789999999999999999999999999999999999999999997752 1358
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
-|+||.|++-.||.||-|++.+.. .+++++.+++.++++.+.++++.+-. .=...||+|||||+|+||.|+++
T Consensus 459 lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 459 LFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred EEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcC
Confidence 999999999999999999998764 78999999999999999999875422 23467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEe
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
|++++|||+|||||++++..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 999999999999999999999999999888999999999998877766655554
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=365.17 Aligned_cols=219 Identities=32% Similarity=0.513 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhhhceEEcccccccc-ccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 958 RRLRSQIGLVQQEPLLFS-CSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
..+|+.++|++|++.+|. .|+++|+.++.. ...++.+.++++.+++.+.+.. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence 678899999999999987 599999975321 1123456777888887544321 2233456799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe--
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD-- 1106 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~-- 1106 (1139)
|||++|||||+++|++|||||||++||+.+...+.+.|++.. .+ +|+|+|||+++.+.. ||||++|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tviivsH~~~~~~~~~d~i~~l~~~ 223 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK---------QD-YTIVIVTHNMQQAARVSDQTAFFNLE 223 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------cC-CEEEEEecCHHHHHHhCCEEEEEecc
Confidence 999999999999999999999999999999999999999764 33 469999999999865 99999996
Q ss_pred ----CCEEEEecChhHHhhcc
Q 048639 1107 ----KGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1107 ----~G~ive~G~~~eLl~~~ 1123 (1139)
+|+|++.|++++++..+
T Consensus 224 ~~~~~g~i~~~~~~~~~~~~~ 244 (258)
T PRK14241 224 ATGKPGRLVEIDDTEKIFSNP 244 (258)
T ss_pred cCCCCceEEecCCHHHHHhCc
Confidence 89999999999998653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=376.02 Aligned_cols=221 Identities=25% Similarity=0.363 Sum_probs=179.4
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC----CCccEEEECCccCCCCCHHH
Q 048639 256 NIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD----PSNGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 330 (1139)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 359999999999999999999999999999999999998 48999999999998887665
Q ss_pred Hh----cceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCC---ccccccCCCCC
Q 048639 331 LR----KNIGAVSQEPS--LFT-GSLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYS---TELGQRGVQLS 397 (1139)
Q Consensus 331 ~~----~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~i~~~g~~LS 397 (1139)
++ +.|+||||+|. +.+ .|+.+++.... .....++. ...+.+.++.+ |++ ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR-----RQRAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 37999999995 443 36666554211 01111111 11223445554 332 34567889999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEe
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~ 474 (1139)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999865 999999999999999
Q ss_pred cChhhhhcc
Q 048639 475 GTHHSLLQT 483 (1139)
Q Consensus 475 g~~~~l~~~ 483 (1139)
|+.+++.++
T Consensus 236 g~~~~~~~~ 244 (326)
T PRK11022 236 GKAHDIFRA 244 (326)
T ss_pred CCHHHHhhC
Confidence 999999864
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.35 Aligned_cols=173 Identities=43% Similarity=0.747 Sum_probs=161.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++. ..++++++||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
|++|+|.+|++|+++|+ ||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
|||||||++||+.+...+.+.|++.. ++++|+|+++|+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALK---------AAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998764 334569999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=364.85 Aligned_cols=217 Identities=32% Similarity=0.502 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 328 (1139)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999963 369999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA--D---DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..++++++|++|++.+|+.|++||+.++.... . .+++.++++..++.+.+ ....+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 1 11222222332222222 223456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEe---------CcEEEE
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVE---------DGQVTE 473 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~---------~G~i~~ 473 (1139)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999999876 99999998 899999
Q ss_pred ecChhhhhc
Q 048639 474 TGTHHSLLQ 482 (1139)
Q Consensus 474 ~g~~~~l~~ 482 (1139)
.|+++++.+
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=333.23 Aligned_cols=223 Identities=24% Similarity=0.454 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-Hhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-LRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 334 (1139)
.+..+|+.++|.+ ++++++|||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|+..++... -|..
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5889999999964 46999999999999999999999999999999999999999999999999999998765 4668
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|||+||+|.+|.+ ||+|||..-.+- .+.....+.....+++.++.+ ++...-...+..||||||+|+.|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999976 999999865321 111112223333334455555 445556778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccc-hhccCEEEEEeCcEEEEecChhhhhccc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMST-IVNADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|+.++||||+|++||.+-..|++.++.+. +|--|++.-|+..+ +.-|||.+++.+|++..+|+++|+.+++
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999998876 47888888899865 5669999999999999999999998754
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=357.29 Aligned_cols=206 Identities=31% Similarity=0.490 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH---HHHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL---KSLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 333 (1139)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 469999999999999999999999999999999999999999999999999876654 34678
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
.++|++|++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999875 99999987532 111221111 122334443 344445566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i 471 (1139)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 58999999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=358.46 Aligned_cols=210 Identities=31% Similarity=0.504 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh---HHHh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL---RRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l---~~lR 961 (1139)
|+++||+++|+++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999988764 5778
Q ss_pred hhceEEcccc--ccc-cccHHHHhccCC----CcCCHHHH----HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 962 SQIGLVQQEP--LLF-SCSIRNNICYGN----EAASEAEI----VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 962 ~~i~~V~Qdp--~LF-~gTIreNL~~~~----~~~sd~ei----~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
++++|+||+| .++ ..|+++|+.++. +...+++. .++++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 8999999999 344 579999997531 11111211 24555555521 122334467999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCC-CeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS-RTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~-~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. ++ ++|||++||+++.+.. ||+|++|++|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 222 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQ---------EELGLTLLFITHDLGVVAKIADRVAVMYAG 222 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH---------HHcCCEEEEEeCCHHHHHHhcCeEEEEeCC
Confidence 99999999999999999999999999999999999999764 22 4569999999999985 9999999999
Q ss_pred EEEEec
Q 048639 1109 EVVEMG 1114 (1139)
Q Consensus 1109 ~ive~G 1114 (1139)
++++.|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.72 Aligned_cols=212 Identities=25% Similarity=0.426 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEccccccccccHHHHhccCC---C-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 GLVQQEPLLFSCSIRNNICYGN---E-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~---~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+|+||+|.+|+.|+++|+.++. . ...++++.++++..++.+. .......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997531 1 1123456677777777421 122344679999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEe-CCEEEEecChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMD-KGEVVEMGSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~-~G~ive~G~~~ 1117 (1139)
++|++|||||||++||+.+...+.+.|++... ..++|+|++||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVR--------EQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999997641 22456999999999998899999995 67777888885
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=353.98 Aligned_cols=210 Identities=28% Similarity=0.479 Sum_probs=182.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH----HHHhc
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL----KSLRK 333 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~~ 333 (1139)
.+.|+.|+|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467999999743 469999999999999999999999999999999999999999999999998765432 23567
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
.++|++|+|.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++..+.+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998899999998653 234455566666666777888899999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH--HHHHHc-CCCeEEEEecCccchhccCEEEEEeCcE
Q 048639 414 PPILLLDEATSALDSESEKLVQE--ALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
|+++||||||++||+.+...+.+ .++.+. .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988887 455443 3789999999999988899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=365.22 Aligned_cols=218 Identities=22% Similarity=0.385 Sum_probs=184.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 459999999999999999999999999999999999999999999999999987777777889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
++|++|++.++. .|++||+.++.... ..+. ....+.+.++.+ |++......+.+||||||||++||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKE-----DEEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHH-----HHHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHH
Confidence 999999998875 59999998763110 0010 011122333333 343445667789999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
||++.+|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999999988743 7899999999998865 99999999999999999998764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=363.43 Aligned_cols=225 Identities=32% Similarity=0.468 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-----ccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-----EGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--~~l 957 (1139)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999875 344
Q ss_pred HHHhhhceEEcccccccc-ccHHHHhccCCC--cC-CHHH----HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 958 RRLRSQIGLVQQEPLLFS-CSIRNNICYGNE--AA-SEAE----IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~-sd~e----i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
..+|++++|+||+|.+|. .|+++|+.++.. .. .+++ +.+.++..++++.+ ++.++.+ ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 577889999999999987 599999975421 11 2232 33345555554432 2234444 45799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
|||++|||||+++|+||||||||++||+.+...+.+.|++.. . ++|+|++||+++.+.+ ||||++|++|
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~-~~tiii~sH~~~~~~~~~d~i~~l~~G 223 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK---------K-VTTIIIVTHNMHQAARVSDTTSFFLVG 223 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---------c-CCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999764 3 3569999999999986 9999999999
Q ss_pred EEEEecChhHHhhccCChHHH
Q 048639 1109 EVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1109 ~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
++++.|+++++++++...|.+
T Consensus 224 ~i~~~~~~~~~~~~~~~~~~~ 244 (252)
T PRK14272 224 DLVEHGPTDQLFTNPRDERTE 244 (252)
T ss_pred EEEEeCCHHHHHhCcCcHHHH
Confidence 999999999998765554543
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=357.31 Aligned_cols=202 Identities=34% Similarity=0.565 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC--CChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--YNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~~ 963 (1139)
|+++||+++|++ .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 369999999999999999999999999999999999999999999999999853 455677899
Q ss_pred ceEEcccccccc-ccHHHHhccCCC---cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE---AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~---~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
++|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+...+. ..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHH
Confidence 999999999886 699999976421 112 23466677777776554433 35799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|||++++|++|||||||++||+++.+.+.+.|++.. +.++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---------~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA---------EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999764 334569999999999976 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=365.17 Aligned_cols=221 Identities=32% Similarity=0.500 Sum_probs=189.0
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccC----
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIK---- 953 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~---- 953 (1139)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999963 3699999999999999999999999999999999999875 7999999998874
Q ss_pred CCChHHHhhhceEEccccccccccHHHHhccCCC-------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 954 EYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 954 ~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
..+...+|++++|+||+|.+|.+|+++|+.++.. ...++++.++++.+++.+.+. ...+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345578889999999999999999999986421 112456788888888754332 22344456899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEE
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVM 1105 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl 1105 (1139)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. . ++|+|+|||+++.+.. ||||++|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~---------~-~~tiiivth~~~~~~~~~d~i~~l 233 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK---------N-KVTILIVTHNMQQAARVSDYTAYM 233 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------h-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999764 3 3569999999999975 9999999
Q ss_pred eCCEEEEecChhHHhhcc
Q 048639 1106 DKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~~~ 1123 (1139)
++|++++.|+++++..++
T Consensus 234 ~~G~i~~~g~~~~~~~~~ 251 (265)
T PRK14252 234 YMGELIEFGATDTIFIKP 251 (265)
T ss_pred ECCEEEEeCCHHHHHhCC
Confidence 999999999999998543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=376.21 Aligned_cols=222 Identities=22% Similarity=0.396 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCccCCCCCHHHH
Q 048639 256 NIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 331 (1139)
.++++|++++|+... ..++|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996421 246999999999999999999999999999999999999996 9999999999988876654
Q ss_pred h----cceEEEecCC--CCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHh--CCCCCCccccccCCCCChH
Q 048639 332 R----KNIGAVSQEP--SLFT-GSLMDNIKVGN---MDADDEQIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLSGG 399 (1139)
Q Consensus 332 ~----~~i~~v~Q~~--~l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~i~~~g~~LSgG 399 (1139)
+ +.|+||+|+| .+++ .|+.+|+.... ...+.++..+. +.+.++. ++++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999999 4554 47888775321 11222222111 1222333 34322 3357788999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 400 qkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988754 7899999999999875 99999999999999999
Q ss_pred hhhhhcc
Q 048639 477 HHSLLQT 483 (1139)
Q Consensus 477 ~~~l~~~ 483 (1139)
++++.+.
T Consensus 246 ~~~i~~~ 252 (330)
T PRK09473 246 ARDVFYQ 252 (330)
T ss_pred HHHHHhC
Confidence 9999764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.64 Aligned_cols=205 Identities=24% Similarity=0.471 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.++.. |++||+.++.. .....+. ...+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999875 99999987421 1111111 12233456665 455566777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998864 47899999999999865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=374.70 Aligned_cols=201 Identities=23% Similarity=0.419 Sum_probs=175.0
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc-cHH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIR 979 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIr 979 (1139)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 445678999999999999875 999
Q ss_pred HHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc
Q 048639 980 NNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053 (1139)
Q Consensus 980 eNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS 1053 (1139)
||+.+... .. .++++.++++..++.+... .. ..+||||||||++|||||+.+|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-------RP----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-------Cc----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99976321 11 2345777888888865432 22 34799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhhc
Q 048639 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1054 ~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
+||+.+.+.+++.|++.. .+++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~---------~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALK---------EEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHH---------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999864 334569999999999976 999999999999999999999764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=357.62 Aligned_cols=202 Identities=27% Similarity=0.482 Sum_probs=166.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36799999963 45999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EecCCCC---CcccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 338 VSQEPSL---FTGSLMDNIKVGNMDA------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 338 v~Q~~~l---~~~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
++|++.+ ++.|++||+.++.... ..++. ...+.+.++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5679999998764311 00111 11122334444 3333445567799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++| +++.|
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999998865 57899999999999876 9999999986 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=358.90 Aligned_cols=213 Identities=30% Similarity=0.537 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999962 27999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEcccccccc-ccHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
++||++.+|. .|++||+.++... ..++++.++++.+++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999885 7999999864211 12346778888888877765543 4699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
++++|++|+|||||++||+.+.+.+.+.|++... ..++|+|++||+++.+.+ ||+|++|++|++++.|+++
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~--------~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 215 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRK--------EFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999997641 214569999999999876 9999999999999999999
Q ss_pred HHhhcc
Q 048639 1118 TLVAES 1123 (1139)
Q Consensus 1118 eLl~~~ 1123 (1139)
++.+.+
T Consensus 216 ~~~~~~ 221 (235)
T cd03299 216 EVFKKP 221 (235)
T ss_pred HHHhCc
Confidence 998653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=362.23 Aligned_cols=220 Identities=30% Similarity=0.493 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 328 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4599999999999999999999999999999999999875 799999999998643 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++|+||++.+|+.|++||+.++... . ..++..+ .+.+.++.+ .+++.......+..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK-----IVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 4667889999999999999999999875311 1 1111111 111222222 1122234566788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++||||++.+|+|+||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987767999999999999876 99999999999999999999865
Q ss_pred c
Q 048639 483 T 483 (1139)
Q Consensus 483 ~ 483 (1139)
.
T Consensus 236 ~ 236 (251)
T PRK14270 236 E 236 (251)
T ss_pred C
Confidence 3
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=366.17 Aligned_cols=217 Identities=29% Similarity=0.526 Sum_probs=180.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCCCC--HH
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKDLD--LK 329 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 329 (1139)
-+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 47999999999876543 33
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCC--CC--CHHHHHHHHHHhcHHHHHHhCCCCC----CccccccCCCCChHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA--DDEQIYNASMMANAHSFISQLPDQY----STELGQRGVQLSGGQK 401 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~--~~~~~~~~~~~~~~~~~i~~l~~g~----~t~i~~~g~~LSgGqk 401 (1139)
.+++.++|++|++.+|+.|++||+.++.. .. ..++..+ .+.+.++.+ |+ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56789999999999999999999987521 11 1111111 122333443 22 2345667889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999888
Q ss_pred hcc
Q 048639 481 LQT 483 (1139)
Q Consensus 481 ~~~ 483 (1139)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 643
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=341.33 Aligned_cols=225 Identities=27% Similarity=0.475 Sum_probs=194.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
-+++++++++|++ -.+++||||++++||+++|||||||||||++++|+|+|+|++|+|.++|+|+..++++.. |..
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3679999999974 459999999999999999999999999999999999999999999999999999998775 567
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCC---------HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDAD---------DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~---------~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
|+--||.+.+|++ ||.||+..+..... ...-.+......+.+.++.+ |+....++...+||+|||.|+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV--GLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc--CCchhhcchhhcCChhHhHHH
Confidence 9999999999976 99999998732110 00001122223344667776 778888889999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
.|||||+.+|++|+||||.++|.+.-...+.+.|+++.+ |.|+++|.||++.+.. ||||+||+.|+++.+|+|+|+.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999998874 5899999999999976 9999999999999999999997
Q ss_pred ccch
Q 048639 482 QTSD 485 (1139)
Q Consensus 482 ~~~~ 485 (1139)
+++.
T Consensus 239 ~dp~ 242 (250)
T COG0411 239 NNPR 242 (250)
T ss_pred cCHH
Confidence 7643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=354.64 Aligned_cols=208 Identities=29% Similarity=0.478 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH---HHhc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK---SLRK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 333 (1139)
|+++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 24699999999999999999999999999999999999999999999999998776543 3678
Q ss_pred ceEEEecCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLF-TGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
.++|++|++.++ +.|++||+.++.. ....++..+. +.+.++.+ |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 999999999875 5699999987531 1222222221 12234443 333345566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
+.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999998874 47899999999999976 99999999999863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=366.84 Aligned_cols=220 Identities=27% Similarity=0.491 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCCC-HH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDLD-LK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 329 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 7999999999887653 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
.+++.++|++|++.+|+.|++||+.++.. ..+.++..+.. .+.++.+ ...+.+.+...+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999987632 12333322211 1223333 22222445677889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999887667899999999999875 999999999999999999998654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=363.66 Aligned_cols=219 Identities=30% Similarity=0.501 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 328 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
...++.++|++|++.+|+.|++||+.++... . ...+..+. +.+.++.+ .+++.+..++.+.+||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-----VEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH-----HHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 5667889999999999989999999986321 1 11111111 11222222 2223345677888999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999988767999999999999975 99999999999999999988754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=371.23 Aligned_cols=212 Identities=23% Similarity=0.419 Sum_probs=184.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999953 469999999999999999999999999999999999999999999999999976 4467889999
Q ss_pred EEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|.+ |++|||.+... ... .+++.++++..++.++.. ....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 111 345677777777765532 2345799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+.+|++|+|||||++||+.+.+.+++.|++.. . ++|||++||+++.+.. ||||++|++|++++.|+++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~---------~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG---------K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLD 217 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999764 3 3569999999999887 9999999999999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
++.++
T Consensus 218 ~~~~~ 222 (301)
T TIGR03522 218 ELSAA 222 (301)
T ss_pred HHHHh
Confidence 99754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=362.80 Aligned_cols=219 Identities=30% Similarity=0.506 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCC-CCCHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIK-DLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 329 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999885 34566
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHh--CCCCCCccccccCCCCChHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--AD-DEQIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~-~~~~~~~~~~~~~~~~i~~--l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
.+++.++|++|++.+|+.|++||+.++... .. .+...+. +.+.++. +.+++.+.....+.+||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-----VERSLRGAALWDEVKDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHH-----HHHHHHHcCCchhhhHHhhcCcccCCHHHHHHH
Confidence 778899999999999999999999876321 11 1111111 1111221 221222345667889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999988777999999999999876 99999999999999999887743
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=364.65 Aligned_cols=221 Identities=24% Similarity=0.421 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998888777788899
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCHH-HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 337 AVSQEPSL-FTGSLMDNIKVGNMDADDE-QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 337 ~v~Q~~~l-~~~ti~~ni~~g~~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|++|++.+ +..|++||+.++....... ..........+.+.++.+ |+.......+..||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999865 4579999998863211000 000000111233445554 3344456678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998875 47899999999999965 99999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=363.65 Aligned_cols=213 Identities=24% Similarity=0.391 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC--------ccEEEECCcccCCCCh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN--------EGIILIDGKGIKEYNL 957 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~--------~G~I~idG~di~~~~l 957 (1139)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 36999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhhhceEEccccc-cccccHHHHhccCC-Cc------C---CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 958 RRLRSQIGLVQQEPL-LFSCSIRNNICYGN-EA------A---SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~-LF~gTIreNL~~~~-~~------~---sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
..+|+.++|+||++. +|..|++||+.++. +. . .++.++++++..++.+.. +.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV-----------GRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCC
Confidence 888889999999985 67899999997642 11 1 123467777777775443 33446799
Q ss_pred hHHHHHHHHHHHhc---------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCC-CeEEEEEecCchhh
Q 048639 1027 GGQKQRIAIARTLL---------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELAS-RTTQITVAHRLATV 1096 (1139)
Q Consensus 1027 gGQrQrlalARALl---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~-~tTvI~IaHrl~ti 1096 (1139)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++.. ++ ++|+|+|+|+++.+
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLA---------RDWNLGVLAIVHDPNLA 218 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHH---------HhcCCEEEEEECCHHHH
Confidence 99999999999999 5999999999999999999999999999764 22 45699999999999
Q ss_pred hc-CCEEEEEeCCEEEEecChhHHhh
Q 048639 1097 IN-SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1097 ~~-~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
.+ ||+|++|++|++++.|+++++++
T Consensus 219 ~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 219 ARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred HHhCCEEEEEECCeEEEecCHHHHcC
Confidence 75 99999999999999999999875
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=362.68 Aligned_cols=220 Identities=31% Similarity=0.532 Sum_probs=181.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC--C---CccEEEECCccCCCC--C
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--P---SNGDILIDSLNIKDL--D 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 327 (1139)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999986 4 699999999998643 3
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqk 401 (1139)
...+++.++|+||++.+|. .|++||+.++... ...++..+ .+.+.++.+. .......+..+.+||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADE-----IVESSLKRVALWDEVKDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhHHhhCCcCcCCHHHH
Confidence 4567889999999999987 5999999875211 11111111 1122333331 1111234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999999988
Q ss_pred hc
Q 048639 481 LQ 482 (1139)
Q Consensus 481 ~~ 482 (1139)
..
T Consensus 235 ~~ 236 (252)
T PRK14256 235 FT 236 (252)
T ss_pred Hh
Confidence 64
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=362.86 Aligned_cols=225 Identities=26% Similarity=0.389 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc-----cCCCChHH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG-----IKEYNLRR 959 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~~~l~~ 959 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 369999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----HhhhceEEccccc--cc-cccHHHHhccCC---CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCC
Q 048639 960 ----LRSQIGLVQQEPL--LF-SCSIRNNICYGN---EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025 (1139)
Q Consensus 960 ----lR~~i~~V~Qdp~--LF-~gTIreNL~~~~---~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L 1025 (1139)
.|+.++|+||++. ++ ..|+.+|+.+.. .... ++++.++++..++.+ +.....+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 3567999999984 33 357888875310 1111 223444455544421 2334556789
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEE
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVV 1104 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~v 1104 (1139)
|||||||++|||||+++|+||||||||++||+.+.+.+.+.|++... ..+.|+|+|||+++.+.. ||+|++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~~~tii~isH~~~~~~~~~d~i~~ 224 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR--------ELGLAVVIVTHDLAVARLLAHRLLV 224 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--------hcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 99999999999999999999999999999999999999999987641 224569999999999985 999999
Q ss_pred EeCCEEEEecChhHHhhccCChHHHH
Q 048639 1105 MDKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1105 l~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
|++|++++.|+++++..++...|.+.
T Consensus 225 l~~g~i~~~~~~~~~~~~~~~~~~~~ 250 (258)
T PRK11701 225 MKQGRVVESGLTDQVLDDPQHPYTQL 250 (258)
T ss_pred EECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 99999999999999986655456544
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=361.58 Aligned_cols=227 Identities=28% Similarity=0.470 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC------CcccCCCChH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID------GKGIKEYNLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id------G~di~~~~l~ 958 (1139)
.|.++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++ |.++...+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 469999999999999999999999999999999999999998666655 5777777777
Q ss_pred HHhhhceEEccccccccc-cHHHHhccCCC--cC-CH----HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 959 RLRSQIGLVQQEPLLFSC-SIRNNICYGNE--AA-SE----AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~-sd----~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .+ +++.++++..++.+++.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999975 99999986421 11 22 235677777787654311 12334567999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++||||++++|++|||||||++||..++..+.+.|++.. .+ +|+|++||+++.+.. ||++++|++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tiilvsh~~~~~~~~~d~v~~l~~g~ 229 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK---------NE-IAIVIVSHNPQQVARVADYVAFLYNGE 229 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---------cC-cEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999998764 33 469999999999965 99999999999
Q ss_pred EEEecChhHHhhccCChHHHHH
Q 048639 1110 VVEMGSHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l~ 1131 (1139)
+++.|+++++.+++...|.+.+
T Consensus 230 i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 230 LVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred EEEECCHHHHHhCCCcHHHHHH
Confidence 9999999999876555565443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=364.02 Aligned_cols=221 Identities=25% Similarity=0.363 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC--------ccEEEECCccCCCCCH
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS--------NGDILIDSLNIKDLDL 328 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 328 (1139)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 46999999999999999999999999999999999999998 9999999999987777
Q ss_pred HHHhcceEEEecCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 329 KSLRKNIGAVSQEPS-LFTGSLMDNIKVGNMDA-DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~-l~~~ti~~ni~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
..+++.++|++|++. ++..|++||+.++.... .............+.+.++.+ |+.+..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 777888999999986 56789999998863211 000000000111223445554 56666778889999999999999
Q ss_pred HHHHc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEe
Q 048639 407 ARAIV---------KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTET 474 (1139)
Q Consensus 407 ARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~ 474 (1139)
||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999988653 7899999999999865 999999999999999
Q ss_pred cChhhhhc
Q 048639 475 GTHHSLLQ 482 (1139)
Q Consensus 475 g~~~~l~~ 482 (1139)
|+++++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99998865
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=367.54 Aligned_cols=216 Identities=32% Similarity=0.532 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|+|++.|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 24699999999999999999999999999999999999999999999999998765 67899999
Q ss_pred eEEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
|||||+|.+++ -|++|||.+... ...++++.+.++..+|.+.- +.+ ...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHH
Confidence 99999999775 599999987421 12356789999999987621 222 3569999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|++|||||||++||+.+...+++.|+++.. .+++||++.||.++.+.. ||||++|++|+++.+|++
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~--------~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~ 221 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAK--------EGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTP 221 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHh--------CCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999998761 233569999999999988 999999999999999999
Q ss_pred hHHhhc
Q 048639 1117 STLVAE 1122 (1139)
Q Consensus 1117 ~eLl~~ 1122 (1139)
+++...
T Consensus 222 ~~l~~~ 227 (293)
T COG1131 222 EELKEK 227 (293)
T ss_pred HHHHHh
Confidence 998754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=356.08 Aligned_cols=205 Identities=32% Similarity=0.576 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhcc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRKN 334 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 334 (1139)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999998853 344567789
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
++|++|++.++. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 599999987532 11222211 1123445555 555556777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i 471 (1139)
+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 47899999999999976 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=362.48 Aligned_cols=223 Identities=32% Similarity=0.462 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--C---CccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--P---NEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 369999999999999999999999999999999999975 4 58999999999864 344
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC--c-----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE--A-----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~-----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
..+|++++|+||+|.+|..|+++|+.++.. . ..++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999986411 1 11345666777777754332 122334568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGE 1109 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ 1109 (1139)
||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+ +|+|+|||+++.+.. ||+|++|++|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~-~tii~vsH~~~~~~~~~d~i~~l~~G~ 224 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---------DQ-YTIILVTHSMHQASRISDKTAFFLTGN 224 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---------hC-CEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999764 33 469999999999876 99999999999
Q ss_pred EEEecChhHHhhccCChH
Q 048639 1110 VVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f 1127 (1139)
+++.|++.+...++...|
T Consensus 225 i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14255 225 LIEFADTKQMFLNPKEKE 242 (252)
T ss_pred EEEeCCHHHHhcCCCChH
Confidence 999999999987654443
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=356.57 Aligned_cols=212 Identities=28% Similarity=0.449 Sum_probs=175.0
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---H
Q 048639 256 NIDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---L 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 331 (1139)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999974211 35999999999999999999999999999999999999999999999999988776543 2
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 332 -RKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 332 -~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
++.++|++|++.++.. |++||+.++.. .....+. ...+.+.++.+ |+.......+.+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3679999999999875 99999986421 1111111 11223344444 344445566779999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
|||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+..||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 3 7899999999998877999999999999753
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=361.56 Aligned_cols=214 Identities=20% Similarity=0.298 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCccEEEECCcccCCCChHHH-hh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY--DPNEGIILIDGKGIKEYNLRRL-RS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~l~~l-R~ 962 (1139)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 46999999999999999999999999999999999994 7999999999999988877654 45
Q ss_pred hceEEccccccccc-cHHHHhccCCCc---------CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGNEA---------AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~~~---------~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
.++|+||+|.+|.+ |+++|+.+.... .+ ++++.++++..++.+.. .+..+. ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 69999999998875 899998643110 11 23466677777764211 122221 249999
Q ss_pred HHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEEe
Q 048639 1029 QKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVMD 1106 (1139)
Q Consensus 1029 QrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl~ 1106 (1139)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||+|++|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---------~~~~tvi~vsH~~~~~~~~~~d~i~~l~ 219 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR---------EPDRSFLIITHYQRLLNYIKPDYVHVLL 219 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH---------HCCcEEEEEEecHHHHHhhcCCeEEEEe
Confidence 9999999999999999999999999999999999999999764 334569999999999976 79999999
Q ss_pred CCEEEEecChhHHh
Q 048639 1107 KGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl 1120 (1139)
+|++++.|+++++-
T Consensus 220 ~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 220 DGRIVKSGDVELAK 233 (243)
T ss_pred CCEEEEecCHHHhc
Confidence 99999999998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=352.70 Aligned_cols=204 Identities=31% Similarity=0.559 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
++++||+++|+. .++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|++++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987643 4678899
Q ss_pred EEcccccccc-ccHHHHhccCC-C-----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGN-E-----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~-~-----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||+|.+|. .|+++|+.++. + ...++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999987 49999997531 1 123456888999999987766654 3699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
++++|+|+||||||++||.++.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~--------~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCS--------ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999997640 224569999999999876 99999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=402.60 Aligned_cols=103 Identities=29% Similarity=0.447 Sum_probs=91.5
Q ss_pred HHHhCCCCCCcc-ccccCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEec
Q 048639 377 FISQLPDQYSTE-LGQRGVQLSGGQKQRIAIARAIVKNP--PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAH 452 (1139)
Q Consensus 377 ~i~~l~~g~~t~-i~~~g~~LSgGqkqRi~lARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH 452 (1139)
+++.+ |++.. .+....+|||||||||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|||+|+|
T Consensus 472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH 549 (943)
T ss_pred Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45555 55543 67888999999999999999999997 9999999999999999999999998875 4899999999
Q ss_pred CccchhccCEEEEE------eCcEEEEecChhhhh
Q 048639 453 RMSTIVNADMIAVV------EDGQVTETGTHHSLL 481 (1139)
Q Consensus 453 ~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 481 (1139)
+++.+..||+|++| ++|+|+.+|+++++.
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 99999889999999 899999999888763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=363.16 Aligned_cols=220 Identities=31% Similarity=0.485 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-----CccEEEECCcccCC--CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-----NEGIILIDGKGIKE--YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--~~l 957 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| .+|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 3699999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCC-----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNE-----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
..+|++++|+||++.+|..|+++|+.++.. ...++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 567899999999999998999999987521 1124456777888887655432 1234456799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe-----
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD----- 1106 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~----- 1106 (1139)
++|||||+++|+||||||||++||+.+...+.+.|++.. ++ +|||+|+|+++.+.. ||||++|+
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---------~~-~tiii~sH~~~~~~~~~d~i~~l~~~~~~ 239 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK---------EQ-YTIIMVTHNMQQASRVADWTAFFNTEIDE 239 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------cC-CEEEEEeCCHHHHHHhCCEEEEEeccccc
Confidence 999999999999999999999999999999999999764 33 569999999999976 99999997
Q ss_pred ----CCEEEEecChhHHhhccC
Q 048639 1107 ----KGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1107 ----~G~ive~G~~~eLl~~~~ 1124 (1139)
+|++++.|+++++..++.
T Consensus 240 ~~~~~G~~~~~g~~~~~~~~~~ 261 (274)
T PRK14265 240 YGKRRGKLVEFSPTEQMFGSPQ 261 (274)
T ss_pred ccccCceEEEeCCHHHHHhCCC
Confidence 899999999999986543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=362.53 Aligned_cols=227 Identities=26% Similarity=0.440 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcccCCC-----C
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEY-----N 956 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~-----~ 956 (1139)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999998654 3
Q ss_pred hHHHhhhceEEcccccccc-ccHHHHhccCCC--------------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCC
Q 048639 957 LRRLRSQIGLVQQEPLLFS-CSIRNNICYGNE--------------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~--------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~ 1021 (1139)
...+|++++|+||++.+|. .|+++|+.++.. ...++++.++++..++.+..+. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 599999986421 1123457778888888665433 2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CC
Q 048639 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD 1100 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~D 1100 (1139)
...||||||||++|||||+.+|++|||||||++||.++.+.+.+.|++... ..++|+|++||+++.+.. ||
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--------~~g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ--------NDGITVVVTLHQVDYALRYCE 221 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCC
Confidence 357999999999999999999999999999999999999999999997640 224569999999998765 99
Q ss_pred EEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhh
Q 048639 1101 VIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136 (1139)
Q Consensus 1101 rI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~ 1136 (1139)
+|++|++|++++.|+++++ + .....+++.....
T Consensus 222 ~i~~l~~g~i~~~g~~~~~-~--~~~~~~~~~~~~~ 254 (262)
T PRK09984 222 RIVALRQGHVFYDGSSQQF-D--NERFDHLYRSINR 254 (262)
T ss_pred EEEEEECCEEEEeCCHHHh-c--cHHHHHHHhhhhc
Confidence 9999999999999999997 2 3456666655443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=362.24 Aligned_cols=230 Identities=26% Similarity=0.437 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCccCCCC-----C
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDL-----D 327 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 327 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 5899999999963 46999999999999999999999999999999999999986 49999999988643 2
Q ss_pred HHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCH--H---HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDADD--E---QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~--~---~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
...+++.++|+||++.+|. .|++||+.++...... . ..........+.+.++.+ |+.......+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 3456788999999999887 4999999876421100 0 000011112234455555 444455677889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 478 (1139)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 37999999999998765 9999999999999999999
Q ss_pred hhhccchHHHHHHh
Q 048639 479 SLLQTSDFYNRLFT 492 (1139)
Q Consensus 479 ~l~~~~~~~~~~~~ 492 (1139)
++ ......+++.
T Consensus 239 ~~--~~~~~~~~~~ 250 (262)
T PRK09984 239 QF--DNERFDHLYR 250 (262)
T ss_pred Hh--ccHHHHHHHh
Confidence 86 2334555554
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=363.17 Aligned_cols=218 Identities=32% Similarity=0.488 Sum_probs=181.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 327 (1139)
+.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 35899999999963 4599999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---ADD----EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq 400 (1139)
...++.+++|++|++.+|+.|++||+.++... ... +.+.++++..++.+.+ .......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 45678899999999999999999999875311 111 1122223222221111 223456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEe-----CcEEEEe
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVE-----DGQVTET 474 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 474 (1139)
|||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777999999999999876 99999998 5999999
Q ss_pred cChhhhhc
Q 048639 475 GTHHSLLQ 482 (1139)
Q Consensus 475 g~~~~l~~ 482 (1139)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (259)
T PRK14260 236 GVTTQIFS 243 (259)
T ss_pred CCHHHHhc
Confidence 99999854
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=351.36 Aligned_cols=205 Identities=25% Similarity=0.465 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4789999999632 2 39999999999999999999999999999999999999999999999876554 357899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCC-HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM-DAD-DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~-~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.+|.. |++||+.++.. ... .++. ...+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~ 146 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAED-----RQAIEVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRD 146 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999975 99999987642 111 0100 11112233333 333334455679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998874 37899999999999976 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=365.19 Aligned_cols=219 Identities=32% Similarity=0.542 Sum_probs=180.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 327 (1139)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999963 469999999999999999999999999999999999997 689999999998854 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
...+++.++|++|++.+|+.|++||+.++... ... +.. ..+.+.++.+ ........++++.+||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-~~~-----~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDG-DID-----ERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcH-HHH-----HHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 55678899999999999988999999875211 111 111 1122233333 1111124567788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEE-EEeCcEEEEecChhhhh
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIA-VVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l~ 481 (1139)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999988767899999999999876 99975 57999999999998875
Q ss_pred c
Q 048639 482 Q 482 (1139)
Q Consensus 482 ~ 482 (1139)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 4
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=368.35 Aligned_cols=220 Identities=33% Similarity=0.516 Sum_probs=187.7
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-----CCccEEEECCcccCCC--C
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-----PNEGIILIDGKGIKEY--N 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-----p~~G~I~idG~di~~~--~ 956 (1139)
..|+++||+++|++ .++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999964 369999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCC-------------------cCCHHHHHHHHHHcCchHHHhhCCCCcccc
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNE-------------------AASEAEIVEVSKKANIHDFISSLPDGYDTV 1017 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~-------------------~~sd~ei~~al~~~~l~~~i~~lp~gldt~ 1017 (1139)
...+|++++|+||++.+|++|+++|+.++.. ...++++.++++.+++.+.+ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 5678899999999999999999999986421 01234567777777765433 233
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh
Q 048639 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1018 v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++. ++ .|+|+|||+++.+.
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~---------~~-~tiiivtH~~~~i~ 263 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA---------EE-YTVVVVTHNMQQAA 263 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---------cC-CEEEEEEcCHHHHH
Confidence 455567899999999999999999999999999999999999999999999865 33 46999999999987
Q ss_pred c-CCEE-EEEeCCEEEEecChhHHhhcc
Q 048639 1098 N-SDVI-VVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1098 ~-~DrI-~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
. ||+| ++|++|++++.|+++++.+.+
T Consensus 264 ~~~d~i~~~l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 264 RISDQTAVFLTGGELVEYDDTDKIFENP 291 (305)
T ss_pred HhcCEEEEEecCCEEEEeCCHHHHHhCc
Confidence 6 9997 578999999999999998653
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=360.55 Aligned_cols=228 Identities=27% Similarity=0.392 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC----CccEEEECCcccCCCChHHH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP----NEGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p----~~G~I~idG~di~~~~l~~l 960 (1139)
.|+++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999998632 223
Q ss_pred hhhceEEccccc-ccc--ccHHHHhccC----CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 961 RSQIGLVQQEPL-LFS--CSIRNNICYG----NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 961 R~~i~~V~Qdp~-LF~--gTIreNL~~~----~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++.++||||+|. .|. .|+.+|+... .....+++++++++.+++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 343 5777776431 122345678888998888653 1123344568999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|+||||||||++||+.+.+.+.+.|++... ..++|||++||+++.+.+ ||||++|++|++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~--------~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQ--------KRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH--------hcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987641 224569999999999875 99999999999999
Q ss_pred ecChhHHhhccCC-hHHHHHHHH
Q 048639 1113 MGSHSTLVAESQG-VYSRLYQLQ 1134 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g-~f~~l~~~~ 1134 (1139)
.|+++++.+++.. .++.++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 222 QGDVETLFNAPKHAVTRSLVSAH 244 (254)
T ss_pred ecCHHHHhhCCCCHHHHHHHHhh
Confidence 9999999876444 455566544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=376.21 Aligned_cols=211 Identities=27% Similarity=0.461 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHHHHh
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLKSLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~ 332 (1139)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 2 23 89999999999999999999999999999999999999999999988642 234457
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++++||+|++.+|+ .|++||+.++......+++ .+.++.+ |++......+.+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~---------~~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQF---------DKIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHH---------HHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999999996 5999999987532222222 2344444 4555566778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 7899999999998866 9999999999999999999997653
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=353.86 Aligned_cols=215 Identities=30% Similarity=0.485 Sum_probs=177.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 789999999963 2 2399999999999999999999999999999999999999999999988765432 56899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|++|++.+|.+ |++||+.++.. .....+ .....+.+.++.+ |++..+......||||||||++||||++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999875 99999987531 110000 0111122334433 3444455566799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++....
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999988643 7899999999999876 9999999999999999999887543
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=372.09 Aligned_cols=203 Identities=22% Similarity=0.440 Sum_probs=172.9
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLM 350 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~ 350 (1139)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+++++||+||++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999865 345678899999999999875 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 351 DNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 351 ~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
||+.+... .....+.. ..+.+.++.+ |+.........+||||||||++|||||+++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987421 11112111 1223445555 444455667789999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 429 ESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 429 ~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999998875 47999999999999976 99999999999999999998854
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=361.07 Aligned_cols=220 Identities=30% Similarity=0.541 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 328 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999988643 33
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++|++|++.+|+.|++||+.++... . ..++..+. +.+.++.+. ...+...+..+.+||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-----VEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 4567889999999999999999999875211 1 11111111 112222221 111233567788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999998765 99999999999999999998864
Q ss_pred c
Q 048639 483 T 483 (1139)
Q Consensus 483 ~ 483 (1139)
.
T Consensus 235 ~ 235 (250)
T PRK14262 235 R 235 (250)
T ss_pred C
Confidence 3
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=317.44 Aligned_cols=195 Identities=33% Similarity=0.538 Sum_probs=169.5
Q ss_pred CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 048639 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM 350 (1139)
Q Consensus 271 ~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 350 (1139)
+.++|+|+||++.+||+++|+||||||||||+|.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~ 430 (1139)
||+.|... ....+- ....+.+++.++.- .++.+..+..+||||||||+||+|-|---|+||+|||||||||+.+
T Consensus 95 DNlifP~~-~r~rr~----dr~aa~~llar~~l-~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 95 DNLIFPWQ-IRNRRP----DRAAALDLLARFAL-PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred hccccchH-HhccCC----ChHHHHHHHHHcCC-chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 99998521 000000 11112245555532 2467788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEecCccc-hhccCEEEEEeCcEE
Q 048639 431 EKLVQEALERAM--QGRTVILIAHRMST-IVNADMIAVVEDGQV 471 (1139)
Q Consensus 431 ~~~i~~~l~~~~--~~~tvi~itH~~~~-~~~~d~i~~l~~G~i 471 (1139)
.+.|.+.|.++. ++..++.|||+.+. ++++|+++-+..|++
T Consensus 169 kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999998875 47899999999998 677999999999986
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=333.53 Aligned_cols=223 Identities=28% Similarity=0.473 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~ 963 (1139)
-++++||+..|.. .++|+||||++++||.++++||||+||||++++|+|+.+|.+|+|.++|.||..++++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999953 57999999999999999999999999999999999999999999999999999999886 5788
Q ss_pred ceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
|+||||...+|. -|+.|||.+|.-...+++-++ ..+++..+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 599999998632111111110 00111222233 244455566778999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHhh
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
||+|+|||||.+|-|.--+.|.++|+++.. ..+.||+.|-++.....+ +||.+||++|+|+..|+.+||.+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~--------~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRK--------EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHH--------cCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999999999999998751 224579999999998876 99999999999999999999997
Q ss_pred cc
Q 048639 1122 ES 1123 (1139)
Q Consensus 1122 ~~ 1123 (1139)
++
T Consensus 227 ~~ 228 (237)
T COG0410 227 DP 228 (237)
T ss_pred CH
Confidence 63
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=361.22 Aligned_cols=220 Identities=31% Similarity=0.515 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-----ccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 328 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999998864 334
Q ss_pred HHHhcceEEEecCCCCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTG-SLMDNIKVGNM--DA-DDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~-~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkq 402 (1139)
..+++.++|++|++.+|.. |++||+.++.. .. ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5678889999999999875 99999986532 11 1222222211 112222 111122334567899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999886 9999999999999999999886
Q ss_pred cc
Q 048639 482 QT 483 (1139)
Q Consensus 482 ~~ 483 (1139)
..
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 53
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=362.27 Aligned_cols=230 Identities=24% Similarity=0.401 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH
Q 048639 256 NIDIRDVCFAYPSR------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~ 329 (1139)
.|+++|++++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 124699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhcceEEEecCCC--CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHH
Q 048639 330 SLRKNIGAVSQEPS--LFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~--l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkq 402 (1139)
..++.++|++|++. +++. |+.+|+.++.. .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 56678999999985 4443 89999875311 111111111 122334444 332 2234456799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999998874 37899999999999986 99999999999999999999
Q ss_pred hhccc--hHHHHHHh
Q 048639 480 LLQTS--DFYNRLFT 492 (1139)
Q Consensus 480 l~~~~--~~~~~~~~ 492 (1139)
+.... ..+..++.
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 237 VLASPLHELTKRLIA 251 (267)
T ss_pred HhcCCCCHHHHHHHH
Confidence 87642 44555553
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=356.96 Aligned_cols=214 Identities=30% Similarity=0.485 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999973 369999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||+|.+|++ |++||+.++... .+.... ...+.+.++.+ ++.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999975 999999876421 111111 11223455655 333345566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999988654 7999999999999876 99999999999999999998864
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.74 Aligned_cols=218 Identities=33% Similarity=0.514 Sum_probs=181.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 327 (1139)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999963 3699999999999999999999999999999999999863 69999999998854 33
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkq 402 (1139)
...++++|+|++|++.+|+.|++||+.++..... ++.+.++++..++.+ ++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-------EVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccch-------hhHHHhcCCcccCCHHHHH
Confidence 4466789999999999998899999987632110 112222222222211 1122345677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEe---------CcEEE
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVE---------DGQVT 472 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~---------~G~i~ 472 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999988778999999999999975 99999997 89999
Q ss_pred EecChhhhhc
Q 048639 473 ETGTHHSLLQ 482 (1139)
Q Consensus 473 ~~g~~~~l~~ 482 (1139)
+.|+++++..
T Consensus 249 ~~g~~~~~~~ 258 (274)
T PRK14265 249 EFSPTEQMFG 258 (274)
T ss_pred EeCCHHHHHh
Confidence 9999999864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=360.58 Aligned_cols=218 Identities=24% Similarity=0.396 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCcc-----CCCCCHHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN-----IKDLDLKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 330 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 76665543
Q ss_pred ----HhcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH
Q 048639 331 ----LRKNIGAVSQEPS--LFT-GSLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 331 ----~~~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq 400 (1139)
+++.++|++|++. ++. .|+.+|+.+.. ......+.. ..+.+.++.++.+ .+..+..+.+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 343 48899986421 011112221 1234567776432 245678899999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecCh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 477 (1139)
|||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988643 7899999999999975 999999999999999999
Q ss_pred hhhhc
Q 048639 478 HSLLQ 482 (1139)
Q Consensus 478 ~~l~~ 482 (1139)
+++..
T Consensus 237 ~~~~~ 241 (258)
T PRK11701 237 DQVLD 241 (258)
T ss_pred HHHhc
Confidence 98864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=365.10 Aligned_cols=221 Identities=29% Similarity=0.483 Sum_probs=181.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCCC--C
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKDL--D 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 327 (1139)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4999999999988543 2
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA-DDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkq 402 (1139)
...+|++++|++|++.+|+.|++||+.++.. .. ......+. +.+.++.+. +++.......+..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-----VEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHH-----HHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 3456889999999999998899999987632 11 11111111 112222221 11122345678899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777899999999999875 9999999999999999999886
Q ss_pred cc
Q 048639 482 QT 483 (1139)
Q Consensus 482 ~~ 483 (1139)
..
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=371.53 Aligned_cols=227 Identities=23% Similarity=0.343 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC----CCccEEEECCccCCCCCHHH
Q 048639 256 NIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD----PSNGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 330 (1139)
.|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999996421 2469999999999999999999999999999999999986 58999999999998877655
Q ss_pred Hh----cceEEEecCCC--CCc-ccHHHHHhcCCC---C-----CCHHHHHHHHHHhcHHHHHHhCCCCCC---cccccc
Q 048639 331 LR----KNIGAVSQEPS--LFT-GSLMDNIKVGNM---D-----ADDEQIYNASMMANAHSFISQLPDQYS---TELGQR 392 (1139)
Q Consensus 331 ~~----~~i~~v~Q~~~--l~~-~ti~~ni~~g~~---~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~---t~i~~~ 392 (1139)
++ +.|+||+|+|. +.+ .||.+|+..... . ....+. ...+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence 43 47999999996 333 489999864210 0 000111 12233455555 333 234677
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCc
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDG 469 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G 469 (1139)
+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998753 7999999999999976 9999999999
Q ss_pred EEEEecChhhhhccc-hHHHH
Q 048639 470 QVTETGTHHSLLQTS-DFYNR 489 (1139)
Q Consensus 470 ~i~~~g~~~~l~~~~-~~~~~ 489 (1139)
+|++.|+.+++.... ..|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999987642 34443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=354.95 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC---CCccEEEECCccCCCCCHHHHh
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD---PSNGDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 332 (1139)
+.++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997532 3679999999999999999999999999999999999999 99999999998874 34567
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHS-FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+.++|++|++.+|+. |++||+.++...................+ .++.+ ++.........+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999987522110000000111111112 33333 333344567789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCc-cchh-ccCEEEEEeCcEEEEec
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRM-STIV-NADMIAVVEDGQVTETG 475 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~-~~~~-~~d~i~~l~~G~i~~~g 475 (1139)
+++|+++||||||++||+.+...+.+.++++. +++|+|++||++ +.+. .||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998864 478999999998 4665 59999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=314.35 Aligned_cols=214 Identities=29% Similarity=0.443 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---H
Q 048639 256 NIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---L 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 331 (1139)
-|+++++++.-+... ...+|++|+|.|++||.++||||||||||||+-+++|+-+|++|+|.+.|+++..++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 478888888876432 346999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 332 R-KNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 332 ~-~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
| +++|+|+|..+|.+ .|..||+.....-..+. .+-....+.+.++.+ |+...+...+.+||||++||||||||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGES---SADSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHh--CcccccccCccccCchHHHHHHHHHH
Confidence 4 68999999999875 59999998753211100 011122234556666 77788889999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
+...|+||+-||||-+||..|...|.+.+..+. .|.|.|+||||+....+|||++-|.+|+++++
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999998764 48899999999999999999999999999753
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=358.86 Aligned_cols=217 Identities=31% Similarity=0.557 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-----CCccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-----PSNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 328 (1139)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 4899999999988653 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHH----HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DA-DDE----QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~~----~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
..++++++|+||++.+|+.|++||+.++.. .. ..+ ++.++++..++.+++. ...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 567889999999999999999999987531 11 112 1222333333222221 224567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999876 999999999999999999988
Q ss_pred hc
Q 048639 481 LQ 482 (1139)
Q Consensus 481 ~~ 482 (1139)
..
T Consensus 233 ~~ 234 (250)
T PRK14266 233 FI 234 (250)
T ss_pred Hh
Confidence 54
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=358.54 Aligned_cols=207 Identities=30% Similarity=0.488 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999987642 24689
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.+++ .|++||+.++.. .....+. ...+.+.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 599999987531 1111111 11233455555 454455677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEe--CcEEEEecChh
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVE--DGQVTETGTHH 478 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 478 (1139)
|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998863 38999999999999876 99999998 59999887653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=319.57 Aligned_cols=218 Identities=29% Similarity=0.519 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC---------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL--------- 326 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--------- 326 (1139)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|.+++-.
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999743 499999999999999999999999999999999999999999999999877421
Q ss_pred -C---HHHHhcceEEEecCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 327 -D---LKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 327 -~---~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
+ .+.+|.+.++|+|+..|++ .|+.||+.-+.-. .+..+ ....+..++.+. |+.......+..|||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~e-----a~e~Ae~~L~kV--Gi~ek~~~YP~~LSG 155 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAE-----AIERAEKYLAKV--GIAEKADAYPAHLSG 155 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHH-----HHHHHHHHHHHh--CchhhhhcCccccCc
Confidence 1 3457889999999999996 4999999744211 12221 112233456655 666667788899999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
||+||+||||||..+|+++++|||||||||+---.+.+.+.++. +|+|.++|||.+.+.++ +.+++.|.+|.|-|+|+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCC
Confidence 99999999999999999999999999999999888999998876 59999999999999998 89999999999999999
Q ss_pred hhhhhcc
Q 048639 477 HHSLLQT 483 (1139)
Q Consensus 477 ~~~l~~~ 483 (1139)
|+++..+
T Consensus 236 P~qvf~n 242 (256)
T COG4598 236 PEQVFGN 242 (256)
T ss_pred hHHHhcC
Confidence 9999764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=375.31 Aligned_cols=215 Identities=30% Similarity=0.470 Sum_probs=182.2
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHHhhhce
Q 048639 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRLRSQIG 965 (1139)
Q Consensus 890 nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~lR~~i~ 965 (1139)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ....|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999953 23 4 899999999999999999999999999999999999999999999986532 345688999
Q ss_pred EEccccccccc-cHHHHhccCCCcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNEAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
||||++.+|.. |+++|+.++..... ++++.++++..++.++.++. ...||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999987532211 23477778888776655443 3579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
++|++|||||||++||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~--------~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHA--------EFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 99999999999999999999999999997641 224569999999999876 999999999999999999999
Q ss_pred hhccCChHH
Q 048639 1120 VAESQGVYS 1128 (1139)
Q Consensus 1120 l~~~~g~f~ 1128 (1139)
..+++..|.
T Consensus 220 ~~~~~~~~~ 228 (354)
T TIGR02142 220 WASPDLPWL 228 (354)
T ss_pred hcCcCcccc
Confidence 977655543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=360.68 Aligned_cols=219 Identities=30% Similarity=0.499 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCC--CCH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKD--LDL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 328 (1139)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 79999999998853 345
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkq 402 (1139)
..+++.++|++|++.+|+ .|++||+.++... ...++..+ .+.+.++.+. ..........+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDE-----LVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 567889999999999987 5999999875311 11111111 1122333331 11123456677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEe------CcEEEEec
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVE------DGQVTETG 475 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~------~G~i~~~g 475 (1139)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 999999999999999999999999999999999999988667999999999999865 99999997 89999999
Q ss_pred Chhhhhc
Q 048639 476 THHSLLQ 482 (1139)
Q Consensus 476 ~~~~l~~ 482 (1139)
+++++..
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14241 236 DTEKIFS 242 (258)
T ss_pred CHHHHHh
Confidence 9998864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=323.77 Aligned_cols=214 Identities=32% Similarity=0.514 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||++++|..|+.|++|.|+|||+|+.. ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3458999999999999999999999999999999999999999999999999987 5678899999
Q ss_pred EEccccccc-cccHHHHhccCCC--c----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLF-SCSIRNNICYGNE--A----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF-~gTIreNL~~~~~--~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
+++-+.-|+ .-|.||||.|+.. + ..+.++.+..+.-++.+++ |.+++ +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 999776666 4699999998632 1 1244566666777777665 44555 599999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+.+|+|++||||||+||..+.+.+++-|++.. ..+.+||+.||-++.++. ||||+++.+|+++..|+++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k---------~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~ 218 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK---------NEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh---------cCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence 999999999999999999999999999999875 333459999999999995 9999999999999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
++.++
T Consensus 219 ~l~~r 223 (245)
T COG4555 219 ALDAR 223 (245)
T ss_pred HHHHH
Confidence 99865
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=360.61 Aligned_cols=219 Identities=31% Similarity=0.507 Sum_probs=182.8
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCC----
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIK---- 324 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~---- 324 (1139)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 3699999999999999999999999999999999999875 7999999998764
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCC
Q 048639 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM--DAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLS 397 (1139)
Q Consensus 325 ~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LS 397 (1139)
..+...+++.++|++|++.+|..|++||+.++.. ... ++++.++++..+ +.+++.+..+..+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAA-------LWDEVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcC-------CchhhhHHHhCCcccCC
Confidence 2344567889999999999999999999987531 111 122222222222 11123345567788999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777899999999999965 99999999999999999
Q ss_pred hhhhhc
Q 048639 477 HHSLLQ 482 (1139)
Q Consensus 477 ~~~l~~ 482 (1139)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=356.51 Aligned_cols=206 Identities=26% Similarity=0.443 Sum_probs=169.2
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc---CCccEEEECCcccCCCChHHHh
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD---PNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~---p~~G~I~idG~di~~~~l~~lR 961 (1139)
+.|+||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999998542 3579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred hhceEEccccccccc-cHHHHhccCCC----cCCHH-----HHHH-HHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGNE----AASEA-----EIVE-VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~~----~~sd~-----ei~~-al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
++++|+||++.+|.+ |++||+.++.. ....+ .+.+ .++..++.+ ........||||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-----------IGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-----------hhcccccCcCHHHH
Confidence 899999999999987 99999986421 11111 1122 333333322 22334568999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc-hhhh-cCCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL-ATVI-NSDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl-~ti~-~~DrI~vl~~G 1108 (1139)
||++|||||+++|++|||||||++||+.+...+.+.|++.. ..+.|+|++||++ +.+. .||+|++|++|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~---------~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA---------RRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999998764 2345699999998 4555 59999999999
Q ss_pred EEEEec
Q 048639 1109 EVVEMG 1114 (1139)
Q Consensus 1109 ~ive~G 1114 (1139)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=355.91 Aligned_cols=214 Identities=34% Similarity=0.570 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 468999999963 369999999999999999999999999999999999999999999999998876554 257899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|++|++.+|.+ |++||+.++.. ........ ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999865 99999986521 11111111 1122334444 445556667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999988753 8999999999999865 99999999999999999888754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=358.07 Aligned_cols=214 Identities=25% Similarity=0.388 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc--CCCccEEEECCccCCCCCHHHH-hc
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY--DPSNGDILIDSLNIKDLDLKSL-RK 333 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-~~ 333 (1139)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999887776554 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCC-CCChHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNMD---------ADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGV-QLSGGQK 401 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~-~LSgGqk 401 (1139)
.++|++|++.++++ |++||+.+.... .+.++. ...+.+.++.+ |+.. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDF-----LKLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHH-----HHHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999999876 899999764211 011111 11223344444 3332 2334444 5999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc--cCEEEEEeCcEEEEecChh
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN--ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 478 (1139)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 47899999999999875 7999999999999999887
Q ss_pred hh
Q 048639 479 SL 480 (1139)
Q Consensus 479 ~l 480 (1139)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 65
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=358.22 Aligned_cols=218 Identities=30% Similarity=0.444 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-----CccEEEECCccCCCC--CH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-----SNGDILIDSLNIKDL--DL 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 328 (1139)
.+.+++++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5889999999963 4699999999999999999999999999999999999986 799999999998643 33
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 329 KSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA-----DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 329 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
..+++.++|++|++.+|+.|++||+.++.... ..+++.++++..++.+. .....++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDE-------VKDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHHHH
Confidence 45678899999999999899999998863211 11223333333322111 1223456788999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEe--------CcEEEEe
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVE--------DGQVTET 474 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 474 (1139)
++|||||+++|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988778899999999998865 99999996 8999999
Q ss_pred cChhhhhcc
Q 048639 475 GTHHSLLQT 483 (1139)
Q Consensus 475 g~~~~l~~~ 483 (1139)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=359.70 Aligned_cols=220 Identities=29% Similarity=0.507 Sum_probs=180.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-----ccEEEECCccCCC--CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-----NGDILIDSLNIKD--LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~--~~ 327 (1139)
+.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998743 34
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhCC--CCCCccccccCCCCChHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD--A-DDEQIYNASMMANAHSFISQLP--DQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~~~~~~~~~~~~~~~~i~~l~--~g~~t~i~~~g~~LSgGqkq 402 (1139)
...+++.++|++|++.+|+.|++||+.++... . +..+..+. +.+.++.+. +..+...++.+.+|||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-----VESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 45678899999999999999999999875211 0 11111111 112222221 11223456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC-----cEEEEe
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED-----GQVTET 474 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~-----G~i~~~ 474 (1139)
|++|||||+++|++|||||||++||+.+...+.+.++++. .++|+|+|||+++.+.. ||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999998853 48999999999999876 999999999 999999
Q ss_pred cChhhhhc
Q 048639 475 GTHHSLLQ 482 (1139)
Q Consensus 475 g~~~~l~~ 482 (1139)
|+++++..
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99999864
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=359.73 Aligned_cols=230 Identities=30% Similarity=0.439 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-
Q 048639 256 NIDIRDVCFAYPSR------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL- 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~- 328 (1139)
.|+++|++|+|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999731 13569999999999999999999999999999999999999999999999999877654
Q ss_pred --HHHhcceEEEecCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHH
Q 048639 329 --KSLRKNIGAVSQEPS--LF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 329 --~~~~~~i~~v~Q~~~--l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkq 402 (1139)
..+++.++|++|++. ++ ..|+++|+.+...... ..........+.+.+..+ |+++ ..+..+..|||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHH
Confidence 346788999999983 44 3599999865311000 000111122334556665 5653 567788899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999999999999999999999999999999999988753 7899999999999975 99999999999999999999
Q ss_pred hhccchHHHH
Q 048639 480 LLQTSDFYNR 489 (1139)
Q Consensus 480 l~~~~~~~~~ 489 (1139)
+....+.|..
T Consensus 239 ~~~~~~~~~~ 248 (268)
T PRK10419 239 KLTFSSPAGR 248 (268)
T ss_pred ccCCCCHHHH
Confidence 8765444433
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=374.09 Aligned_cols=232 Identities=30% Similarity=0.452 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCC--------CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCcc--CC
Q 048639 255 GNIDIRDVCFAYPSR--------PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN--IK 324 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~--------~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~--~~ 324 (1139)
.-++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.+ +.
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 457899999999742 12468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhcceEEEecCCC--CCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHH
Q 048639 325 DLDLKSLRKNIGAVSQEPS--LFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQ 400 (1139)
Q Consensus 325 ~~~~~~~~~~i~~v~Q~~~--l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGq 400 (1139)
.-+....|+++-+|+|+|+ |-+ .||+++|.-........ ..+...+...+.++.. |+.. ....++.+|||||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQ 434 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELV--GLPPEFLDRYPHELSGGQ 434 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcch
Confidence 2234567789999999996 333 59999987432100000 0111112223333333 2333 4678889999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecCh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 477 (1139)
|||+||||||..+|+++++|||||+||+-++..+.+.|+++.+ |.|.|+||||++.++. ||||+||++|+|+|.|+.
T Consensus 435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~ 514 (539)
T COG1123 435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPT 514 (539)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999998764 7999999999999987 999999999999999999
Q ss_pred hhhhcc-chHHHHH
Q 048639 478 HSLLQT-SDFYNRL 490 (1139)
Q Consensus 478 ~~l~~~-~~~~~~~ 490 (1139)
+++.+. ...|.+.
T Consensus 515 ~~v~~~p~h~Ytr~ 528 (539)
T COG1123 515 EKVFENPQHPYTRK 528 (539)
T ss_pred HHHhcCCCChHHHH
Confidence 998765 3344433
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=357.96 Aligned_cols=204 Identities=27% Similarity=0.437 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +.+++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999988642 34689
Q ss_pred EEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.+...+ ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999886 699999986421 111 3457778888887655433 235799999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe--CCEEEEecC
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD--KGEVVEMGS 1115 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~ 1115 (1139)
|+++|++|||||||++||+.+...+.+.|++... .+++|+|+|||+++.+.. ||+|++|+ +|++++.++
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--------~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ--------ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 9999999999999999999999999999987530 224569999999999876 99999998 599999875
Q ss_pred h
Q 048639 1116 H 1116 (1139)
Q Consensus 1116 ~ 1116 (1139)
.
T Consensus 215 ~ 215 (255)
T PRK11248 215 L 215 (255)
T ss_pred C
Confidence 4
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=347.44 Aligned_cols=202 Identities=32% Similarity=0.536 Sum_probs=169.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999886543 3567899
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC--C---HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGN-MDA--D---DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~-~~~--~---~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
|++|+|.+|.. |++||+.++. +.. . .+++. +.++.+ |+.........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVV---------DAAQQV--GIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHH---------HHHHHc--CcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 111 1 11222 233333 33334455567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
++.+|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998875 37899999999999875 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1139 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-89 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-89 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-84 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-84 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-80 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-83 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-79 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-74 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-66 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-66 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-60 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-64 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-61 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-64 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-61 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-62 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-57 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-60 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-58 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-47 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-56 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-43 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-54 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-53 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-54 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-53 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-54 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-53 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-54 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-53 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-54 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-53 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-54 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-50 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-53 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-52 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-53 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-52 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-49 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-47 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-48 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-46 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-45 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-25 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-22 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-23 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-18 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-22 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-19 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-22 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-14 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-22 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-15 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-22 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-14 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-21 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-18 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-21 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-14 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-21 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-13 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 8e-20 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-20 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-15 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-19 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-14 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-18 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-15 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-18 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-16 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-18 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-15 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-18 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-15 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-17 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-14 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-14 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-14 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-17 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-13 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-17 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-13 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 6e-17 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 6e-14 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-17 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-13 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-12 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-16 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-11 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-16 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-11 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-16 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-16 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-16 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-15 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-12 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-15 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-13 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-15 | ||
| 1g29_1 | 372 | Malk Length = 372 | 9e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-15 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-11 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-14 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-14 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-14 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 2e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-12 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-10 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-12 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-11 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-11 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-11 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 6e-11 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 6e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 5e-07 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 9e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 7e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 1e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 3e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-04 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1139 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-153 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-153 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-152 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-149 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-150 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-150 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-147 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-140 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-135 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-133 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-134 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-126 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-130 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-125 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-123 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-122 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-121 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-119 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-107 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-96 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-65 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-65 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-46 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-45 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-45 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-42 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-43 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-41 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-40 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-39 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-40 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-38 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-38 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-37 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-35 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-35 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-34 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-33 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-25 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-33 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-32 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-33 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-23 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-32 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-25 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 5e-31 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-27 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-31 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-25 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 8e-31 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-27 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-30 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-27 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-30 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-21 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-29 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-25 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-29 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-25 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 7e-29 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-27 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-26 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-28 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-26 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-27 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-25 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-24 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-20 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-22 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 4e-18 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-22 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-17 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 8e-21 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-16 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-19 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-17 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 5e-17 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 9e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-14 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 7e-07 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-10 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-04 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 9e-10 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-09 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 9e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 8e-04 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 7e-05 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1311 bits (3394), Expect = 0.0
Identities = 406/1132 (35%), Positives = 660/1132 (58%), Gaps = 31/1132 (2%)
Query: 24 EVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLL 83
E+G FD G++ T ++ +S I + IG+K+G F + ATFF G +I W+++L+
Sbjct: 155 EIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLV 213
Query: 84 IFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF 143
I + P++ + + K +++ + +L ++A ++ E+ ++ I+TV AF G++ E++ +
Sbjct: 214 ILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273
Query: 144 SDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
++ +++ + +A+ + +G + + +AL W G +V +K + G+VL S
Sbjct: 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFS 333
Query: 204 ILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI-SYSSKGKELEKIDGNIDIRDV 262
+L GA ++ A+P+++ F A+ A +E+F++I KP I S+S G + + I GN++ +++
Sbjct: 334 VLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNI 393
Query: 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322
F+YPSR + ILKG +L + +G+ VALVG+SGCGKST + L+ R YDP +G + ID +
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQD 453
Query: 323 IKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLP 382
I+ ++++ LR+ IG VSQEP LF ++ +NI+ G D ++I A ANA+ FI +LP
Sbjct: 454 IRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLP 513
Query: 383 DQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
Q+ T +G+RG QLSGGQKQRIAIARA+V+NP ILLLDEATSALD+ESE +VQ AL++A
Sbjct: 514 HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573
Query: 443 QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDS 502
+GRT I+IAHR+ST+ NAD+IA + G + E G H L++ Y +L Q +
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIEL 633
Query: 503 RTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI-----------F 551
+A + +S + + + G + K +T F
Sbjct: 634 GNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF 693
Query: 552 FRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP----QAKQEVGWYS 607
+RI LN E VVG A +G +P F + + + +Q +S
Sbjct: 694 WRILK-LNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFS 752
Query: 608 LAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTS 667
L F ++G+ S T LQ + FG GE LR ++ +LR +++WF+ P+N G+LT+
Sbjct: 753 LLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTT 812
Query: 668 RIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQA 727
R+ +D + VK R++VI Q I+++ I+SL+ W++ L+ A++P I G+++
Sbjct: 813 RLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 728 KSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESI 787
K G + + +E+ N RTV S E+ SL+ R++ K++
Sbjct: 873 KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932
Query: 788 KYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIP 847
+G+ F+ + ++A A + A L+ ++ TF + + + ++ ++ + P
Sbjct: 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP 992
Query: 848 TVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNF 907
A + I+++ EI+ + + + ++G ++F + FNYP+RP + VL
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGL 1052
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967
SL+++ G +ALVG SG GKS+V+ LL RFYDP G + +DGK IK+ N++ LR+Q+G+V
Sbjct: 1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIV 1112
Query: 968 QQEPLLFSCSIRNNICYG--NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL 1025
QEP+LF CSI NI YG + S EIV +K+ANIH FI SLPD Y+T VG+KG QL
Sbjct: 1113 SQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Query: 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTT 1085
SGGQKQRIAIAR L+++P I+LLDEATSALD ESE+V+ AL+ RT
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA---------REGRTC 1223
Query: 1086 QITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
I +AHRL+T+ N+D+IVV+ G+V E G+H L+A+ +G+Y + +QA +
Sbjct: 1224 -IVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 581 bits (1499), Expect = 0.0
Identities = 200/636 (31%), Positives = 331/636 (52%), Gaps = 33/636 (5%)
Query: 522 EQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKP 581
+ +++ ++ + +E+ + K ++ + L ++VGT+AA G++ P
Sbjct: 6 DLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALP 65
Query: 582 LFGFF--------------------IITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTH 621
L + + ++E+ Y+ ++ +G L
Sbjct: 66 LMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVA 125
Query: 622 TLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681
+Q F+ + + + +R+ + ++ EI WF+ +D G L +R+ D S + I
Sbjct: 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIG 183
Query: 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAH 741
D++ + Q +++ I+ W++ LV A+ P + I AK F+ A+
Sbjct: 184 DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAY 243
Query: 742 TEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWN 801
+ ++ E + IRTV +F ++ L++ +LE+ KR K++I + G + L
Sbjct: 244 AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIY 303
Query: 802 IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFE 861
++A+A WY L+ K+ + + + + S+ + I +A F+
Sbjct: 304 ASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363
Query: 862 ILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVG 921
I+D K I+ + + I+G +EF+NI F+YPSR EV +L +L+++ G VALVG
Sbjct: 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 922 PSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981
SG GKS+ + L+ R YDP +G++ IDG+ I+ N+R LR IG+V QEP+LF+ +I N
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483
Query: 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041
I YG E + EI + K+AN +DFI LP +DT+VGE+G QLSGGQKQRIAIAR L++
Sbjct: 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101
P I+LLDEATSALD ESE V+ +AL+ RTT I +AHRL+TV N+DV
Sbjct: 544 NPKILLLDEATSALDTESEAVVQAALDKA---------REGRTT-IVIAHRLSTVRNADV 593
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137
I D G +VE G+H L+ E +G+Y +L Q
Sbjct: 594 IAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAG 628
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 470 bits (1211), Expect = e-153
Identities = 155/494 (31%), Positives = 252/494 (51%), Gaps = 20/494 (4%)
Query: 14 GNRVLMKIGGEV---------GAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFA 64
+V+M + + FD STG +++ ++ + + L + A
Sbjct: 93 SGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGA 151
Query: 65 TFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTI 124
+ ++ W++S+++ ++ P++ + +KR ++S + + T+ EQ +
Sbjct: 152 SIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQML 211
Query: 125 SQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGA 184
K V F G+ E K F +K + + + Q + A +++ +
Sbjct: 212 KGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271
Query: 185 VVVTAKRSTGGEVLA--AVMSILFGAI-ALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRI 241
T G + + M L + +LT Q + AA +F ++ +
Sbjct: 272 FPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ---RGMAACQTLFAILDSEQEK 328
Query: 242 SYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTV 301
+ +++ G+++ R+V F YP R + L+ +L IPAGK VALVG SG GKST+
Sbjct: 329 D--EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTI 385
Query: 302 ISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA- 360
SL+ RFYD G IL+D ++++ L SLR + VSQ LF ++ +NI +
Sbjct: 386 ASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEY 445
Query: 361 DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
EQI A+ MA A FI+++ + T +G+ GV LSGGQ+QRIAIARA++++ PIL+LD
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505
Query: 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480
EATSALD+ESE+ +Q AL+ + RT ++IAHR+STI AD I VVEDG + E GTH L
Sbjct: 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
Query: 481 LQTSDFYNRLFTMQ 494
L Y +L MQ
Sbjct: 566 LAQHGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 470 bits (1211), Expect = e-153
Identities = 173/578 (29%), Positives = 284/578 (49%), Gaps = 30/578 (5%)
Query: 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTL 623
L+V +A + S + + + + + W L + + T +
Sbjct: 25 AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYI 84
Query: 624 QHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683
Y V K + +RR L+ ++ +A+F+K G+L SRI D+ V + S
Sbjct: 85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGA 142
Query: 684 MSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTE 743
+ +V+ +SI+ I+ W+++++ + P I + +K + S + +
Sbjct: 143 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 202
Query: 744 FISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803
+ + + V F +E ++ K + K + + ++A
Sbjct: 203 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 262
Query: 804 HAVALWYTAVLIDKKQAT------FRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLA 857
A L+ + T + + S+T + ++A L
Sbjct: 263 LAFVLYAASFPSVMDSLTAGTITVV---FSSMIALMRPLKSLTNVNAQFQRGMAACQTL- 318
Query: 858 PAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKV 917
F ILD + E + R G +EF+N+ F YP R EV L N +L+I G V
Sbjct: 319 --FAILDSEQEKDEGKRVID---RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTV 372
Query: 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS 977
ALVG SG+GKS++ +L+ RFYD +EG IL+DG ++EY L LR+Q+ LV Q LF+ +
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 978 IRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036
+ NNI Y E S +I E ++ A DFI+ + +G DT++GE G LSGGQ+QRIAIA
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096
R LL+ I++LDEATSALD ESER I +AL+ L +RT+ + +AHRL+T+
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDEL---------QKNRTS-LVIAHRLSTI 542
Query: 1097 INSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+D IVV++ G +VE G+HS L+A+ GVY++L+++Q
Sbjct: 543 EQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 466 bits (1201), Expect = e-152
Identities = 171/580 (29%), Positives = 277/580 (47%), Gaps = 23/580 (3%)
Query: 561 RELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQE----VGWYSLAFSLVGLF 616
+ ++ + + PL + I + + ++ +A + +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 617 SLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMV 676
++ Y K + ++R+ LY + ++ N G + SR+++D
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQT 131
Query: 677 KAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGD 736
K I + I +I+IA + +D ++ L A + P + + + + + +
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 737 SAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFS 796
+ A E E I V SF E+N + + K +
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 797 LCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQ--IFSLTVPSITELWTLIPTVISAIT 854
+ +I + + A L T + A+ + L P + L T+ +
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGT-LAAFVGYLELLFGP-LRRLVASFTTLTQSFA 309
Query: 855 VLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPG 914
+ F+++D +I + + +GRI+ ++ F Y E +L + +L IE G
Sbjct: 310 SMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKG 367
Query: 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974
VA VG SG GKS+++ L+ RFYD G ILIDG IK++ LR+QIGLVQQ+ +LF
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 975 SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034
S +++ NI G A++ E+VE +K AN HDFI +LP GYDT VGE+G +LSGGQKQR++
Sbjct: 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487
Query: 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094
IAR L P I++LDEATSALD ESE +I AL+ L RTT + VAHRL+
Sbjct: 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVL---------SKDRTT-LIVAHRLS 537
Query: 1095 TVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
T+ ++D IVV++ G +VE G+H L+A+ QG Y LY +Q
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 458 bits (1180), Expect = e-149
Identities = 167/470 (35%), Positives = 246/470 (52%), Gaps = 13/470 (2%)
Query: 33 STGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMIL 92
G+VI+ V + + +D I L + T + I +++L + P +
Sbjct: 116 QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYI 175
Query: 93 VIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQII 152
+ + R+ ++ + L+E + + + I V +F E +E K+F +
Sbjct: 176 LTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLT 235
Query: 153 ISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALT 212
+ +VT ++I VGA + + T G + A F
Sbjct: 236 RALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAA------FVGYLEL 289
Query: 213 YAAPDMQ---VFN--QAKAAGFE-IFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAY 266
P + F A + +FQ+I I + +E G IDI V F Y
Sbjct: 290 LFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQY 349
Query: 267 PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL 326
+ ILK +LSI G+ VA VG SG GKST+I+L+ RFYD ++G ILID NIKD
Sbjct: 350 NDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 327 DLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS 386
SLR IG V Q+ LF+ ++ +NI +G A DE++ A+ MANAH FI LP Y
Sbjct: 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 387 TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
TE+G+RGV+LSGGQKQR++IAR + NPPIL+LDEATSALD ESE ++QEAL+ + RT
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT 528
Query: 447 VILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNL 496
+++AHR+STI +AD I V+E+G + ETGTH L+ Y L+++QNL
Sbjct: 529 TLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL 578
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 461 bits (1189), Expect = e-150
Identities = 148/471 (31%), Positives = 244/471 (51%), Gaps = 11/471 (2%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLV 87
FD + STG +++ ++ + A L + A+ + + W++SL++ +V
Sbjct: 116 FDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174
Query: 88 VPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCM 147
P++ + +KR +S + TS EQ + K V ++ G+ E K F
Sbjct: 175 APVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVS 234
Query: 148 DKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLA--AVMSIL 205
+ + + + + Q + ++++ +V T G + M L
Sbjct: 235 NSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGL 294
Query: 206 FGAI-ALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCF 264
+ ALT + Q + AA +F ++ + E E+++G +D++DV F
Sbjct: 295 MRPLKALTSVTSEFQ---RGMAACQTLFGLMDLETERDNGKY--EAERVNGEVDVKDVTF 349
Query: 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324
Y + ++ L S SIP GK VALVG SG GKST+ +L RFYD +G I +D +++
Sbjct: 350 TYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
Query: 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPD 383
D L +LR++ VSQ LF ++ +NI + EQI A+ A+A FI +P
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
Query: 384 QYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443
T +G+ G LSGGQ+QR+AIARA++++ P+L+LDEATSALD+ESE+ +Q AL+ +
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 444 GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+TV++IAHR+STI AD I VV++G++ E G H LL Y +L +Q
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-150
Identities = 156/577 (27%), Positives = 273/577 (47%), Gaps = 28/577 (4%)
Query: 564 LRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTL 623
LVV T+A + + + + + + + +
Sbjct: 25 AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFA 84
Query: 624 QHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDR 683
Y V + +RR L+ + + +F++ G L SRI D+ V S
Sbjct: 85 SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRA 142
Query: 684 MSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTE 743
+ IV+ +SI+ + W+++LV V P +K + S + A
Sbjct: 143 LVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGH 202
Query: 744 FISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIA 803
S + + V S+ +E ++ ++ + K + + ++A
Sbjct: 203 VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA 262
Query: 804 HAVALWYTAVLIDKKQATFRDGIRAY--QIFSLTVP--SITELWTLIP-TVISAITVLAP 858
L+ +V + + T +F L P ++T + + + + T+
Sbjct: 263 LFAVLFLASVDSIRAELTPGT-FTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL--- 318
Query: 859 AFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVA 918
F ++D +TE + E+ R+ G ++ +++ F Y + E L++ S I G VA
Sbjct: 319 -FGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVA 373
Query: 919 LVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI 978
LVG SG+GKS++ L RFYD + G I +DG +++Y L LR LV Q LF+ +I
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 979 RNNICYGNEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037
NNI Y E + +I + +++A+ +FI ++P G DTV+GE G LSGGQ+QR+AIAR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097
LL+ +++LDEATSALD ESER I +AL+ L ++T + +AHRL+T+
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL---------QKNKTV-LVIAHRLSTIE 543
Query: 1098 NSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+D I+V+D+GE++E G H+ L+A+ G Y++L+++Q
Sbjct: 544 QADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 441 bits (1138), Expect = e-147
Identities = 97/261 (37%), Positives = 145/261 (55%), Gaps = 3/261 (1%)
Query: 241 ISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKST 300
+S S + G + +DV FAYP+ P+ +L+G + ++ GK+ ALVG +G GKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 301 VISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD- 359
V +L+ Y P+ G +L+D + D L + AV QEP LF S +NI G
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRT 120
Query: 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419
E+I +M + AH FIS P Y TE+G+ G QLSGGQ+Q +A+ARA+++ P +L+L
Sbjct: 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180
Query: 420 DEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTH 477
D ATSALD+ ++ VQ L + + RTV+LI ++S A I +++G V E GTH
Sbjct: 181 DNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTH 240
Query: 478 HSLLQTSDFYNRLFTMQNLRP 498
L++ Y +
Sbjct: 241 LQLMERGGCYRSMVEALAAPS 261
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 423 bits (1091), Expect = e-140
Identities = 103/260 (39%), Positives = 151/260 (58%), Gaps = 10/260 (3%)
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
+KG ++FQ++ F YP+ P V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSK 999
G +L+DG+ + +Y+ L +Q+ V QEPLLF S R NI YG + EI V+
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
++ HDFIS P GYDT VGE G QLSGGQ+Q +A+AR L+++P +++LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ + L E ASRT + + +L+ + I+ + +G V E G+H L
Sbjct: 192 QLRVQRLLYESP-------EWASRTV-LLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
Query: 1120 VAESQGVYSRLYQLQAFSGN 1139
+ G Y + + A +
Sbjct: 244 MER-GGCYRSMVEALAAPSD 262
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 409 bits (1054), Expect = e-135
Identities = 108/246 (43%), Positives = 157/246 (63%), Gaps = 2/246 (0%)
Query: 251 EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
+I R++ F Y +IL +LSI G+++ +VG SG GKST+ L+ RFY
Sbjct: 2 HHHHHDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASM 370
P NG +LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 371 MANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430
+A AH FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ES
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 431 EKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNR 489
E ++ + + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 490 LFTMQN 495
L+ +Q+
Sbjct: 241 LYQLQS 246
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-133
Identities = 114/255 (44%), Positives = 162/255 (63%), Gaps = 11/255 (4%)
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
I F+NI+F Y V +L+N +L I+ G + +VG SG+GKS++ L+ RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKK 1000
G +LIDG + + LR Q+G+V Q+ +L + SI +NI N S +++ +K
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
A HDFIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
VI+ + + RT I +AHRL+TV N+D I+VM+KG++VE G H L+
Sbjct: 182 HVIMRNMHKI---------CKGRTV-IIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
Query: 1121 AESQGVYSRLYQLQA 1135
+E + +YS LYQLQ+
Sbjct: 232 SEPESLYSYLYQLQS 246
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 406 bits (1045), Expect = e-134
Identities = 108/239 (45%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ R V FAY IL+ S ++A G SG GKST+ SL+ RFY P+ G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAH 375
ID I ++ L++ R IG VSQ+ ++ G++ +N+ G D DE ++ +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
SF+ +PDQ +TE+G+RGV++SGGQ+QR+AIARA ++NP IL+LDEAT++LDSESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+AL+ M+GRT ++IAHR+STIV+AD I +E GQ+T +G H+ L+ T Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-126
Identities = 94/250 (37%), Positives = 155/250 (62%), Gaps = 14/250 (5%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +++ F Y ++ L + S + +P +A GPSG GKS++ +LL RFY P G I
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA-ASEAEIVEVSKKANIH 1004
IDG+ I +L RSQIG V Q+ + + +IR N+ YG E ++ ++ +V A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
F+ ++PD +T VGE+G ++SGGQ+QR+AIAR L+ P I++LDEAT++LD+ESE ++
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
AL++L + RTT + +AHRL+T++++D I ++KG++ G H+ LVA +
Sbjct: 180 KALDSL---------MKGRTT-LVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-TH 228
Query: 1125 GVYSRLYQLQ 1134
+Y++ Q
Sbjct: 229 PLYAKYVSEQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-130
Identities = 106/255 (41%), Positives = 161/255 (63%), Gaps = 1/255 (0%)
Query: 241 ISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKST 300
+ S +K NI+ DV F+YP + + LK + IP+G ALVG +G GKST
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 301 VISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA 360
+ L+ RFYD GDI I N+ + S+R IG V Q+ LF ++ NI G +DA
Sbjct: 62 IAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120
Query: 361 DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420
DE++ A+ A + FI LP ++ T +G +G++LSGG++QRIAIAR ++K+P I++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480
EATS+LDS++E L Q+A+E + RT+I+IAHR+STI +A+ I ++ G++ E GTH L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 481 LQTSDFYNRLFTMQN 495
L+ + Y ++ MQ+
Sbjct: 241 LKLNGEYAEMWNMQS 255
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-125
Identities = 106/264 (40%), Positives = 169/264 (64%), Gaps = 12/264 (4%)
Query: 872 DAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL 931
+S + IEF ++ F+YP + L + + I G ALVG +G+GKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 932 ALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991
LL RFYD EG I I GK + +YN +RS IG+V Q+ +LF+ +I+ NI YG A++
Sbjct: 64 KLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
E+++ +K A ++DFI +LP +DT+VG KG +LSGG++QRIAIAR LLK P I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
TS+LD+++E + A+E L +RT I +AHRL+T+ +++ I++++KG++V
Sbjct: 183 TSSLDSKTEYLFQKAVEDL---------RKNRTL-IIIAHRLSTISSAESIILLNKGKIV 232
Query: 1112 EMGSHSTLVAESQGVYSRLYQLQA 1135
E G+H L+ G Y+ ++ +Q+
Sbjct: 233 EKGTHKDLLKL-NGEYAEMWNMQS 255
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-123
Identities = 110/288 (38%), Positives = 171/288 (59%), Gaps = 2/288 (0%)
Query: 223 QAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSI 282
+F +++ + + L G I+ +V F+Y + L+ S ++
Sbjct: 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTV 77
Query: 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP 342
G+ +ALVG SG GKST++ L+ RFYD S+G I ID +I + SLR +IG V Q+
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 343 SLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402
LF ++ DNI+ G + A ++++ A+ A H I P+ Y T++G+RG++LSGG+KQ
Sbjct: 138 VLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQ 197
Query: 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADM 462
R+AIAR I+K P I+LLDEATSALD+ +E+ +Q +L + RT I++AHR+ST+VNAD
Sbjct: 198 RVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQ 257
Query: 463 IAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVE 510
I V++DG + E G H +LL Y ++ +Q + TK T+E
Sbjct: 258 ILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSEDTKPQTME 305
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 376 bits (969), Expect = e-122
Identities = 130/276 (47%), Positives = 180/276 (65%), Gaps = 14/276 (5%)
Query: 860 FEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919
F++L +TE++ D P + KGRIEF+N+ F+Y L + S + PG +AL
Sbjct: 29 FDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTLAL 85
Query: 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979
VGPSGAGKS++L LL RFYD + G I IDG+ I + LRS IG+V Q+ +LF+ +I
Sbjct: 86 VGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIA 145
Query: 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
+NI YG A E+ ++ A IHD I + P+GY T VGE+G +LSGG+KQR+AIART+
Sbjct: 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI 205
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099
LK P I+LLDEATSALD +ER I ++L + A+RTT I VAHRL+TV+N+
Sbjct: 206 LKAPGIILLDEATSALDTSNERAIQASLAKV---------CANRTT-IVVAHRLSTVVNA 255
Query: 1100 DVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135
D I+V+ G +VE G H L++ GVY+ ++QLQ
Sbjct: 256 DQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQ 290
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 386 bits (993), Expect = e-121
Identities = 175/618 (28%), Positives = 303/618 (49%), Gaps = 39/618 (6%)
Query: 527 PEESKRELSASTGQEEVKGKRTTIFFRIW-FCLNERELLRLV-VGTVAAAFSGISKPLFG 584
PE +R + +K T R+ + L +V V ++ G+ P
Sbjct: 2 PEIRRRPHGPILEKPALKNPTAT-LRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLI 60
Query: 585 FFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLY 644
I + + P+ + Y L + + LQ + + + LR+ L+
Sbjct: 61 GKTIDV---VFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELF 117
Query: 645 TGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVV 704
+ R + +F++ G + SR+++D + ++ + + I ++ A I+ V
Sbjct: 118 EKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175
Query: 705 DWRMALVAWAVMPCHFIG-GLIQAKSAQGFSGDSAA-----AHTEFISLTSESASNIRTV 758
+ ++LV +++P + ++ +++ + F + E E S + +
Sbjct: 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIE------EDISGLTVI 229
Query: 759 ASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKK 818
F EE ++K E ++ K I GV+ + N+ A+ + L K
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKD 289
Query: 819 QATFRDGIRAYQIFS--LTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPES 876
T I + +S T P + EL + A+ FEILD E E D P++
Sbjct: 290 IITVGT-IATFIGYSRQFTRP-LNELSNQFNMIQMALASAERIFEILD--LEEEKDDPDA 345
Query: 877 SESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936
E ++G IEF+N+ F+Y + VL + + I+PG KVALVGP+G+GK++++ LL+R
Sbjct: 346 VELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403
Query: 937 FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVE 996
FYD + G IL+DG I++ LRS IG+V Q+ +LFS +++ N+ YGN A++ EI E
Sbjct: 404 FYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKE 463
Query: 997 VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
+K + FI LP+GY+TV+ + G LS GQ+Q +AI R L P I++LDEATS +D
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116
++E+ I +A+ L + +T+ I +AHRL T+ N+D+I+V+ GE+VEMG H
Sbjct: 524 TKTEKSIQAAMWKL---------MEGKTSII-IAHRLNTIKNADLIIVLRDGEIVEMGKH 573
Query: 1117 STLVAESQGVYSRLYQLQ 1134
L+ + +G Y L+ Q
Sbjct: 574 DELIQK-RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 379 bits (976), Expect = e-119
Identities = 151/477 (31%), Positives = 245/477 (51%), Gaps = 24/477 (5%)
Query: 28 FDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICC-WEVSLLIFL 86
FD G +I+ V + + I + +G + F S T G +I + +SL+
Sbjct: 128 FDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLA-GAVIMMFRVNVILSLVTLS 185
Query: 87 VVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDC 146
+VP+ ++I + + L + +IE+ IS + + F E E++ F
Sbjct: 186 IVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRV 245
Query: 147 MDKQIIISRGEALIKGVGLGMFQSVTFC---CWALIIWVGAVVVTAKRSTGGEVLAAVMS 203
+ + + GV + + +ALI G + T G +
Sbjct: 246 NESLRKVGTKAQIFSGV---LPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT---- 298
Query: 204 ILFGAIALTYAAPDMQ---VFN--QAKAAGFE-IFQVIQRKPRISYSSKGKELEKIDGNI 257
F + + P + FN Q A E IF+++ + EL ++ G I
Sbjct: 299 --FIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD-DPDAVELREVRGEI 355
Query: 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317
+ ++V F+Y + +LK + I G+ VALVG +G GK+T+++L+ RFYD G IL
Sbjct: 356 EFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL 413
Query: 318 IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSF 377
+D ++I+ + SLR +IG V Q+ LF+ ++ +N+K GN A DE+I A+ + ++ F
Sbjct: 414 VDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF 473
Query: 378 ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEA 437
I LP+ Y T L G LS GQ+Q +AI RA + NP IL+LDEATS +D+++EK +Q A
Sbjct: 474 IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAA 533
Query: 438 LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+ + M+G+T I+IAHR++TI NAD+I V+ DG++ E G H L+Q FY LFT Q
Sbjct: 534 MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 346 bits (891), Expect = e-107
Identities = 131/462 (28%), Positives = 240/462 (51%), Gaps = 15/462 (3%)
Query: 33 STGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMIL 92
T +IT +++ ++ +++ + L + + F G+++AV ++S ++ ++P I+
Sbjct: 118 HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIV 177
Query: 93 VIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSF----SDCMD 148
++ TK+ N + E ++ + + ++ V AF E E ++F
Sbjct: 178 LLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRR 237
Query: 149 KQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAV---MSIL 205
I L +F + ++W G V+V + G ++A M I+
Sbjct: 238 SIISAFSLIVFA----LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 206 FGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFA 265
F + + + +A A+ + +V+ KP I + L ++G++ +V F
Sbjct: 294 FSLMMIGNI---LNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFR 350
Query: 266 YPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD 325
Y +L G + S+ G +VA++G +G GKST+++L+ R DP G + +D L+++
Sbjct: 351 YFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 326 LDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQY 385
+ LK LR +I AV QE LF+G++ +N+K G DA D++I A+ +A H FI LP+ Y
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
+ + + G SGGQKQR++IARA+VK P +L+LD+ TS++D +EK + + L+R +G
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 446 TVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
T +I ++ T + AD I V+ +G+V GTH LL+ Y
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = 3e-96
Identities = 154/587 (26%), Positives = 277/587 (47%), Gaps = 44/587 (7%)
Query: 561 RELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFT 620
+ + V +S+P I+ G+A D + G L +L+G
Sbjct: 23 IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIG 82
Query: 621 HTLQHYFFGVVGEKAMTNLRRTLYTGVLR---NEIAWFEKPQNDAGSLTSRIVSDTSMVK 677
T F + +LRR L+ VL + + F SL +R+ +D + ++
Sbjct: 83 CT---VFASYASQNFGADLRRDLFRKVLSFSISNVNRFH-----TSSLITRLTNDVTQLQ 134
Query: 678 AIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIG-GLIQAKSAQGFSGD 736
++ + ++V+ + ++++ ++ +++ V ++P + + K F
Sbjct: 135 NLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFR-- 192
Query: 737 SAAAHTEFISL-TSESASNIRTVASFCHEENILQK-AKISLEKTKRSSRKESIKYGVIQG 794
T+ ++ E+ +R V +F EE + K + + S+ +
Sbjct: 193 KIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252
Query: 795 FSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAY-----QI-FSLTVPSITELWTLIP- 847
F + N+ LW+ VL+ Q I AY QI FSL + I + I
Sbjct: 253 FIFIV-NMGMIAVLWFGGVLVRNNQMEIGS-IMAYTNYLMQIMFSLMM--IGNILNFIVR 308
Query: 848 TVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNF 907
SA V E+L+ K IE +A + ++G + F+N++F Y + VL+
Sbjct: 309 ASASAKRV----LEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTD-PVLSGV 362
Query: 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967
+ ++PG VA++G +G+GKS+++ L+ R DP G + +D ++ L+ LR I V
Sbjct: 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAV 422
Query: 968 QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027
QE +LFS +I+ N+ +G E A++ EIVE +K A IHDFI SLP+GYD+ V G SG
Sbjct: 423 PQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482
Query: 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQI 1087
GQKQR++IAR L+K+P +++LD+ TS++D +E+ I+ L+ T
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK----------RYTKGCTTF 532
Query: 1088 TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
+ ++ T + +D I+V+ +G+V G+H L+ + Y +Y+ Q
Sbjct: 533 IITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK-PYREIYESQ 578
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 1e-65
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 15/251 (5%)
Query: 883 KGRIEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN 941
G++ +++ Y +L N S I PG +V L+G +G+GKS++L+ LR +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 942 EGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKA 1001
EG I IDG L + R G++ Q+ +FS + R N+ N A S+ EI +V+ +
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL-DPNAAHSDQEIWKVADEV 132
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ I P D V+ + GC LS G KQ + +AR++L + I+LLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 1062 VIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
+I L+ A T I R+ ++ D +V+++ +V + S L
Sbjct: 193 IIRRTLKQ---------AFADCTV-ILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242
Query: 1122 ESQGVYSRLYQ 1132
+ +
Sbjct: 243 YPADRFVAGFI 253
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 4e-65
Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 8/287 (2%)
Query: 255 GNIDIRDVCFAYPSRPDQ-LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
G + ++D+ Y IL+ S SI G+ V L+G +G GKST++S R +
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G+I ID ++ + L+ RK G + Q+ +F+G+ N+ D++I+ +
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVG 133
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
S I Q P + L G LS G KQ + +AR+++ ILLLDE ++ LD + ++
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 434 VQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQ--TSDFYNRLF 491
++ L++A TVIL R+ ++ D V+E+ +V + + L F F
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV-AGF 252
Query: 492 TMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSAST 538
+ A+ ++ E + +Q+ P ES+ +
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGAN 299
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 7e-46
Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 29/250 (11%)
Query: 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE 942
+ +N+ + L + + +IE G +A+ G +GAGK+S+L +++ +P+E
Sbjct: 4 TTEVVMENVTAFWEEGGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 943 GIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE--AEIVEVSKK 1000
G I G+ I Q + +I+ NI +G +++
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107
Query: 1001 ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE 1060
D S + + V+GE G LSGGQ+ RI++AR + K + LLD LD +E
Sbjct: 108 QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 1061 RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120
+ I +S C +A++T I V ++ + +D I+++ +G G+ S L
Sbjct: 167 KEIF--------ESCVCKLMANKTR-ILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 217
Query: 1121 AESQGVYSRL 1130
Q +S
Sbjct: 218 N-LQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-45
Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 19/240 (7%)
Query: 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313
+ + +V + +LK + I G+++A+ GS+G GK++++ ++ +PS
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
G I I SQ + G++ +NI G + DE Y + + A
Sbjct: 63 GKI-------------KHSGRISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKAC 107
Query: 374 A-HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
IS+ ++ + LG+ G+ LSGGQ+ RI++ARA+ K+ + LLD LD +EK
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 433 -LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTS-DFYNRL 490
+ + + + M +T IL+ +M + AD I ++ +G GT L DF ++L
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 1e-45
Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 29/258 (11%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
I +N F + T LN + I G VA+VG G GKSS+L+ LL D EG
Sbjct: 2 NSITVRNATFTWARSDPPT-LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE--AEIVEVSKKA 1001
+ I G + V Q+ + + S+R NI +G + +++ A
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
+ D LP G T +GEKG LSGGQKQR+++AR + I L D+ SA+DA +
Sbjct: 106 LLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1062 VIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121
I + PK G L ++T I V H ++ + DVI+VM G++ EMGS+ L+A
Sbjct: 165 HIFE--NVIGPK----GMLKNKTR-ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
Query: 1122 ESQGVYSRLYQLQAFSGN 1139
G ++ L+ ++ +
Sbjct: 218 -RDGAFAEF--LRTYASH 232
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 20/240 (8%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
+I +R+ F + +R D L G + SIP G +VA+VG GCGKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+ I + ++ V Q+ + SL +NI G +E Y + + A A
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACA 105
Query: 375 -HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-SEK 432
+ LP TE+G++GV LSGGQKQR+++ARA+ N I L D+ SA+D+ +
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 433 LVQEAL--ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490
+ + + + ++ +T IL+ H MS + D+I V+ G+++E G++ LL +
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 5e-43
Identities = 64/284 (22%), Positives = 123/284 (43%), Gaps = 25/284 (8%)
Query: 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGK 298
+ ++ ++ D ++ + +LK + I G+++A+ GS+G GK
Sbjct: 23 EKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERGQLLAVAGSTGAGK 77
Query: 299 STVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM 358
++++ ++ +PS G I I SQ + G++ +NI +
Sbjct: 78 TSLLMMIMGELEPSEGKI-------------KHSGRISFCSQNSWIMPGTIKENIIGVSY 124
Query: 359 DADDEQIYNASMMANA-HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417
D E Y + + A IS+ ++ + LG+ G+ LSGGQ+ RI++ARA+ K+ +
Sbjct: 125 D---EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181
Query: 418 LLDEATSALDSESEK-LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
LLD LD +EK + + + + M +T IL+ +M + AD I ++ +G GT
Sbjct: 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGT 241
Query: 477 HHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISV 520
L ++ + D + T T + S+
Sbjct: 242 FSELQNLRPDFSSK--LMGCDSFDQFSAERRNSILTETLHRFSL 283
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-41
Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 29/268 (10%)
Query: 865 RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924
+ E + K ++ F+ S VL + + +IE G +A+ G +G
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY 984
AGK+S+L +++ +P+EG I G+ I Q + +I+ NI
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENII- 120
Query: 985 GNEAASE--AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042
G +++ D S + + V+GE G LSGGQ+ RI++AR + K
Sbjct: 121 GVSYDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177
Query: 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102
+ LLD LD +E+ I +S C +A++T I V ++ + +D I
Sbjct: 178 ADLYLLDSPFGYLDVLTEKEIF--------ESCVCKLMANKTR-ILVTSKMEHLKKADKI 228
Query: 1103 VVMDKGEVVEMGSHSTLVAESQGVYSRL 1130
+++ +G G+ S L + +S
Sbjct: 229 LILHEGSSYFYGTFSELQN-LRPDFSSK 255
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-40
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ + + +NY L ++ I+ G A++G +G GKS++ P+ G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 946 LIDGKGI--KEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSK 999
L D K I + +LR IG+V Q+P LFS S+ ++ +G N E EI +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1000 KA----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
A I LS GQK+R+AIA L+ P +++LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
D I+ L + + T I H + V D + VM +G V+ G
Sbjct: 175 DPMGVSEIMKLLVEMQKELG--------ITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
Query: 1115 S 1115
+
Sbjct: 227 N 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 7e-39
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ + Y LKG +++I G++ A++G +G GKST+ PS+G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 317 LIDSLNI--KDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIKVG--NMDADDEQI----Y 366
L D+ I + LR++IG V Q+P LF+ S+ ++ G NM +++I
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
NA + LS GQK+R+AIA +V P +L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTHC-----------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 427 DSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
D + + L G T+I+ H + + D + V+++G+V G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 39/223 (17%), Positives = 94/223 (42%), Gaps = 25/223 (11%)
Query: 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I +++V + ++ L+ +L + G+ V ++G +G GK+T++ ++ P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG--SLMDNIKVG--NMDADDEQIYNASMM 371
I I+ ++++ +R I + P + ++ D + + D +
Sbjct: 60 IFIN-----GMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
+L ++ L ++ +LS GQ + + A+ P I+ LDE +D+
Sbjct: 115 L-------KLGEEI---LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 432 KLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473
++ ++ G+ IL+ H + + + A G +
Sbjct: 165 HVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 8e-38
Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 37/234 (15%)
Query: 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ +N+ + E L N +L++ G KV ++GP+G+GK+++L + P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC--SIRNNICYG--NEAASEAEIVEVSKK 1000
I I+G +R++R+ I P + ++ + + + +E+ K
Sbjct: 60 IFINGM-----EVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1001 ANIHD-FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ + + +LS GQ + + L +P I+ LDE +DA
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
VI ++ I V H L + + G ++
Sbjct: 164 RHVISRYIKEYG------------KEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-38
Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 257 IDIRDVCFAYPSRP--DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
I++ +V + ++ L+ SL I G+ + + G++G GKST++ +VA +P++G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIKVG--NM--DADDEQIYNA 368
D+L D + +R+NIG Q P F + D + N D D +
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKK 119
Query: 369 SMMA---NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+M + SF ++P LSGG+K+R+AIA IV P IL+LDE
Sbjct: 120 AMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 426 LDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483
LD E + + +E+ G+TVILI+H + T++N D + V+E G+ GT L+
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Query: 484 SD 485
D
Sbjct: 229 YD 230
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 37/243 (15%)
Query: 886 IEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
IE N+ + E L N SL I G + + G +G+GKS++L ++ +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEP--LLFSCSIRNNICYG--NEAASEAEIVEVSK 999
+L DG+ +R IG+ Q P F+ + + + + N + V + K
Sbjct: 63 DVLYDGE---RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118
Query: 1000 KA------NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
KA + F +P LSGG+K+R+AIA ++ P I++LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
LD E + ++ +E T I ++H + TVIN D +VV++KG+ V
Sbjct: 168 GLDREGKTDLLRIVEKWKTLG---------KTVILISHDIETVINHVDRVVVLEKGKKVF 218
Query: 1113 MGS 1115
G+
Sbjct: 219 DGT 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 54/249 (21%), Positives = 106/249 (42%), Gaps = 26/249 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I + + + ILK S I G L G +G GK+T+++++ + ++G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 317 LID--SLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN---MDADDE----QIYN 367
+ +++R++IG VS + +V + A Q +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
+ AH + + + Q+ + LS G+KQR+ IARA++ P +L+LDE + L
Sbjct: 136 DEIRNEAHQLLKLVG---MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192
Query: 427 DSESEKLVQEALER-AMQGR--TVILIAHRMSTIVNA-DMIAVVEDGQVTETGTHHSLLQ 482
D + + + L+ + +I + H + I I +++DGQ + G +L
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
Query: 483 T---SDFYN 488
+ S F+
Sbjct: 253 SENMSRFFQ 261
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 43/267 (16%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I+ I + +L S QI G K L G +GAGK+++L +L + G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 946 LIDGK--GIKEYNLRRLRSQIGLVQQE---PLLFSCSIRNNIC------------YGNEA 988
+ GK G Y+ +R IG V + + + +E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
+EA ++ K + LS G+KQR+ IAR L+ +P +++L
Sbjct: 139 RNEAH--QLLKLVGMSAKAQQYIG-----------YLSTGEKQRVMIARALMGQPQVLIL 185
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS-DVIVVMDK 1107
DE + LD + ++S L++L+ + I V H + + + I+++
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL-------AMIYVTHFIEEITANFSKILLLKD 238
Query: 1108 GEVVEMGSHSTLVAESQGVYSRLYQLQ 1134
G+ ++ G+ ++ SR +Q
Sbjct: 239 GQSIQQGAVEDILTSEN--MSRFFQKN 263
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-35
Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 886 IEFQNIKFNYPSR-PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ NI + + LNN SL + G ++G SGAGKS+++ + P EG
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 945 ILIDGKGIKEYN---LRRLRSQIGLV-QQEPLLFSCSIRNNICYGNEAA--SEAEI---- 994
+L+DG+ + + L + R QIG++ Q LL S ++ N+ E + E+
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 995 ------VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL 1048
V + K + + P LSGGQKQR+AIAR L P ++L
Sbjct: 145 TELLSLVGLGDKHDSY------PS-----------NLSGGQKQRVAIARALASNPKVLLC 187
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVA---HRLATVINS--DVIV 1103
D+ATSALD + R I+ L+ +N R +T+ H + V+ D +
Sbjct: 188 DQATSALDPATTRSILELLKDIN-----------RRLGLTILLITHEMD-VVKRICDCVA 235
Query: 1104 VMDKGEVVEMGS 1115
V+ GE++E +
Sbjct: 236 VISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 33/238 (13%)
Query: 257 IDIRDVCFAYPSRPDQLI-LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I + ++ + + L SL +PAG++ ++G+SG GKST+I V P+ G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 316 ILIDSLNIKDLD---LKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIYN 367
+L+D + L L R+ IG + Q +L + ++ N+ ++ N D+ +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 368 ASMMA------NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDE 421
+++ S+ S LSGGQKQR+AIARA+ NP +LL D+
Sbjct: 145 TELLSLVGLGDKHDSYPS---------------NLSGGQKQRVAIARALASNPKVLLCDQ 189
Query: 422 ATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
ATSALD + + + E L+ + G T++LI H M + D +AV+ +G++ E T
Sbjct: 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 25/233 (10%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+ +++V Y + + LK +L+I G+ V+++G SG GKST+++++ P+ G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 316 ILIDSLNIKDLDLKSL----RKNIGAVSQE----PSLFTGSLMDNIKVGNMDADDEQIYN 367
+ ID++ DLD L R IG V Q+ P L + ++N+++ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSG 118
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGV-----QLSGGQKQRIAIARAIVKNPPILLLDEA 422
A + EL +R QLSGGQ+QR+AIARA+ NPPI+L D+
Sbjct: 119 EERRKRALECLKMA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 423 TSALDSESEKLVQEALER--AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
T ALDS++ + + + L++ G+TV+++ H ++ + I ++DG+V
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 43/210 (20%)
Query: 886 IEFQNIKFNYPS-RPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS---VLALLLRFYDPN 941
++ +N+ Y + L N +L I+ G V+++GPSG+GKS+ ++ L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 942 EGIILIDGKGIKEYN---LRRLRSQ-IGLVQQE---------------PLLFSCSIRNNI 982
EG + ID + + L ++R IG V Q+ PL+F +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 983 CYGNEAASEA-EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041
+ A E ++ E+ ++ H P+ QLSGGQ+QR+AIAR L
Sbjct: 119 EERRKRALECLKMAELEERFANH-----KPN-----------QLSGGQQQRVAIARALAN 162
Query: 1042 RPAIMLLDEATSALDAESERVIVSALEALN 1071
P I+L D+ T ALD+++ I+ L+ LN
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLN 192
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-33
Identities = 79/260 (30%), Positives = 121/260 (46%), Gaps = 40/260 (15%)
Query: 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSS 929
+ + I+ +K ++ + VL ++ I G V ++GPSG+GKS+
Sbjct: 9 HHSSGLVPRGSHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 930 VLALLLRFYDPNEGIILIDGKGI--KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG- 985
L L D +EG I+IDG + K+ NL ++R ++G+V Q LF ++ NNI
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125
Query: 986 ------NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039
+EA+ +E+ K + D + PD LSGGQ QR+AIAR L
Sbjct: 126 MKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD-----------SLSGGQAQRVAIARAL 174
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASR-TTQITVAHRLA---T 1095
P IML DE TSALD E ++ L + +LA+ T + V H +
Sbjct: 175 AMEPKIMLFDEPTSALDPE---MVGEVLSVMK-------QLANEGMTMVVVTHEMGFARE 224
Query: 1096 VINSDVIVVMDKGEVVEMGS 1115
V D ++ MD G ++E G
Sbjct: 225 V--GDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 75/257 (29%), Positives = 123/257 (47%), Gaps = 37/257 (14%)
Query: 236 QRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSG 295
+G + ++ ID+ + ++ +LKG ++ I G++V ++G SG
Sbjct: 7 HHHHSSGLVPRGSHMLQM---IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSG 60
Query: 296 CGKSTVISLVARFYDPSNGDILID--SLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDN 352
GKST + + D G+I+ID +L KD +L +R+ +G V Q +LF ++++N
Sbjct: 61 SGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNN 120
Query: 353 I-----KVGNMDADDEQIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIA 405
I KV + + A A + + L D+ LSGGQ QR+A
Sbjct: 121 ITLAPMKVRKWPREKAE-------AKAMELLDKVGLKDK----AHAYPDSLSGGQAQRVA 169
Query: 406 IARAIVKNPPILLLDEATSALDSESEKLVQEAL----ERAMQGRTVILIAHRMS--TIVN 459
IARA+ P I+L DE TSALD E +V E L + A +G T++++ H M V
Sbjct: 170 IARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFAREV- 225
Query: 460 ADMIAVVEDGQVTETGT 476
D + ++ G + E G
Sbjct: 226 GDRVLFMDGGYIIEEGK 242
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 9e-33
Identities = 63/374 (16%), Positives = 133/374 (35%), Gaps = 45/374 (12%)
Query: 275 LKGFSLSIP-AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR- 332
K F L P ++ ++G +G GK+TV+ ++A P+ GD +S KD LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
K I +E ++ L K+ ++ + + D+ L
Sbjct: 72 KEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMT 129
Query: 393 GV------QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT 446
+ LSGG QR+ +A ++++ + + D+ +S LD + +A+ ++ +
Sbjct: 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 447 VILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
VI++ H + + D+I ++ S N ++ P ++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA-ARVGINNF--LKGYLPAENMKIR 246
Query: 506 ASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLR 565
++ E + + + + ++ G ++ E E++
Sbjct: 247 PDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDN--------GEAKEGEIIG 298
Query: 566 LV----VG--TVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLF 619
++ +G T A G G + Y PQ +F +
Sbjct: 299 ILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR---------------IFPNY 343
Query: 620 THTLQHYFFGVVGE 633
T+Q Y +
Sbjct: 344 DGTVQQYLENASKD 357
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-28
Identities = 43/246 (17%), Positives = 92/246 (37%), Gaps = 23/246 (9%)
Query: 237 RKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGC 296
R I + K + ++ + + L + G+++ ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305
Query: 297 GKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG 356
GK+T ++ G + + + + G V Q + + +
Sbjct: 306 GKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ----YLENASKDALST 361
Query: 357 NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416
+ +E + + + +L + +L SGG+ Q++ IA + K +
Sbjct: 362 SSWFFEE------VTKRLN--LHRLLESNVNDL-------SGGELQKLYIAATLAKEADL 406
Query: 417 LLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTE 473
+LD+ +S LD E +V +A++R + +I H +S AD I V + G+ +
Sbjct: 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK-GEPEK 465
Query: 474 TGTHHS 479
G S
Sbjct: 466 AGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-28
Identities = 52/257 (20%), Positives = 108/257 (42%), Gaps = 35/257 (13%)
Query: 864 DRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPS 923
D + + + S +K ++++ I L + + + G + ++GP+
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPN 303
Query: 924 GAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983
G GK++ +L+ +EG + + + + R + G VQQ + ++ +
Sbjct: 304 GIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDAL- 359
Query: 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043
+ S EV+K+ N+H + S + LSGG+ Q++ IA TL K
Sbjct: 360 ----STSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEA 404
Query: 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDV 1101
+ +LD+ +S LD E ++ A++ + + + + H + I +D
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRE--------RKAVTFIIDHDLSIHDYI-ADR 455
Query: 1102 IVVMDKGEVVEMGSHST 1118
I+V KGE + G ++
Sbjct: 456 IIVF-KGEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 49/231 (21%)
Query: 904 LNNFSLQI-EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR- 961
F L + + ++G +G GK++VL +L PN G + K K+ L+R R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 962 ------------------SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+I V+ ++ + +E + E+ E+ N+
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 1004 HD-FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
+ + LSGG QR+ +A +LL+ + + D+ +S LD
Sbjct: 132 WNKDAN---------------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR---E 173
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112
++ +A+ EL I V H L + +D+I ++ V
Sbjct: 174 RMNMAKAIR-------ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 5e-32
Identities = 54/260 (20%), Positives = 90/260 (34%), Gaps = 32/260 (12%)
Query: 254 DGNIDIRDVCFAYPS---RPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
D D F+YPS +L +++ ++G +G GK+T+I L+A
Sbjct: 344 DLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP--SLFTGSLMDNIKVGNMDADDEQIYNA 368
P G I L++ + I LF + + Q +
Sbjct: 404 PDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL-------NPQ-FQT 449
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
++ I + DQ L SGG+ QR+AI A+ I L+DE ++ LDS
Sbjct: 450 DVVKPLR--IDDIIDQEVQHL-------SGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
Query: 429 ESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSD 485
E + + + R +T ++ H AD + V E +
Sbjct: 501 EQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN-AHARAPESLLT 559
Query: 486 FYNRLFTMQNLRPIDDSRTK 505
NR N+ D +
Sbjct: 560 GCNRFLKNLNVTFRRDPNSF 579
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-29
Identities = 50/309 (16%), Positives = 106/309 (34%), Gaps = 32/309 (10%)
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--------RFYDP 311
V Y + +L + G+++ LVG++G GKST + ++A RF DP
Sbjct: 81 AHVTHRYSANSFKLHR---LPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP 137
Query: 312 SNGDILIDSLNIKDL---DLKSLRKNIGAVSQEP--SLFTGSLMDNIKVG--NMDADDEQ 364
+I +L K L +I A+ + ++ ++ + E+
Sbjct: 138 PEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEK 197
Query: 365 IYNASMMANAHSF-ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
+ + + + +LSGG+ QR AI + V+ + + DE +
Sbjct: 198 SPED-VKRYIKILQLENVLKRDIE-------KLSGGELQRFAIGMSCVQEADVYMFDEPS 249
Query: 424 SALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLL 481
S LD + + + + VI + H +S + +D + ++ G
Sbjct: 250 SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY-GVVTLPA 308
Query: 482 QTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQE 541
+ N + P ++ R + ++ + + S L + G
Sbjct: 309 SVREGINIF--LDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDF 366
Query: 542 EVKGKRTTI 550
+ +
Sbjct: 367 VLNVEEGEF 375
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-29
Identities = 50/264 (18%), Positives = 93/264 (35%), Gaps = 37/264 (14%)
Query: 858 PAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKV 917
PA + R ++ +++E + + VLN + +
Sbjct: 323 PAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKK-TQGDFVLNVEEGEFSDSEIL 381
Query: 918 ALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL--LFS 975
++G +G GK++++ LL P+EG + + +I + LF
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN------VSMKPQKIAPKFPGTVRQLFF 435
Query: 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035
IR + + +V K I D I LSGG+ QR+AI
Sbjct: 436 KKIRG------QFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAI 478
Query: 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH--RL 1093
L I L+DE ++ LD+E + + L ++ T V H +
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFI--------LHNKKTAFIVEHDFIM 530
Query: 1094 ATVINSDVIVVMDKGEVVEMGSHS 1117
AT + +D ++V + + +
Sbjct: 531 ATYL-ADKVIVFEGIPSKNAHARA 553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 3e-25
Identities = 46/248 (18%), Positives = 85/248 (34%), Gaps = 45/248 (18%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ Y + + PG + LVG +G GKS+ L +L PN G
Sbjct: 78 NLEAHVTHRYS---ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 946 LIDGKG---IKEYNLRRLRS--------------QIGLVQQEPLLFSCSIRN---NICYG 985
+ IK + L++ + V P ++ +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 986 NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045
E + E ++ K + + + + +LSGG+ QR AI + ++ +
Sbjct: 195 MEKSPE-DVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADV 242
Query: 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVV 1104
+ DE +S LD + + +L LA I V H L+ + SD + +
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSL---------LAPTKYVICVEHDLSVLDYLSDFVCI 293
Query: 1105 MDKGEVVE 1112
+ V
Sbjct: 294 IYGVPSVY 301
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 5e-31
Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 41/238 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+ V YP ++G S I G+MV L+G SG GK+T++ L+A P+ GD+
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADD--EQIYNA- 368
I + DL + ++N+G V Q +LF ++ DN+ + + D+ ++
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 369 SMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
M +L R +LSGGQ+QR+A+ARA+ P +LL DE +A+D
Sbjct: 131 RFM--------RLES-----YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 428 SESEKLVQEALERAMQ---GRTVILIAH------RMSTIVNADMIAVVEDGQVTETGT 476
++ + ++ + R + G T + + H ++ D + V+ +G V + GT
Sbjct: 178 TQIRRELRTFV-RQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGT 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 63/249 (25%), Positives = 109/249 (43%), Gaps = 53/249 (21%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IEF ++ YP + S QI G V L+GPSG+GK+++L L+ P +G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAEIVEVSKKA- 1001
I GK + + ++ R +GLV Q LF ++ +N+ +G + + E+ ++
Sbjct: 73 WIGGKRVTDLPPQK-R-NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1002 ---NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA- 1057
+ + + P +LSGGQ+QR+A+AR L RP ++L DE +A+D
Sbjct: 131 RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 1058 --ESERVIVSALEALNPKSSSCGELAS--RTTQIT---VAH----RLATVINSDVIVVMD 1106
R + +T V H L +D ++V+
Sbjct: 180 IRRELRT----------------FVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLH 220
Query: 1107 KGEVVEMGS 1115
+G V + G+
Sbjct: 221 EGNVEQFGT 229
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-31
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 38/228 (16%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ F Y + + + + + G ++A++G +GCGKST++ L+ + P G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL-FTGSLMDNIKVG---------NMDADDEQIY 366
+ ++IG V Q S F S++D + +G + D Q+
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
++ ++ L + T LSGGQ+Q I IARAI ++LLDE TSAL
Sbjct: 110 MQALDYLN---LTHLAKREFTS-------LSGGQRQLILIARAIASECKLILLDEPTSAL 159
Query: 427 DSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471
D ++ +V L Q TV+ H+ + +V A+ ++
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 55/262 (20%), Positives = 104/262 (39%), Gaps = 49/262 (18%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +N+ F Y + + + + G +A++G +G GKS++L LLL + P +G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 946 LIDGKGIKEYNLRRLRSQIGLV-QQEPLLFSCSIRNNICYG---------NEAASEAEIV 995
+ IG V Q F+ S+ + + G + + ++
Sbjct: 63 EVYQS-------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 996 -EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+ N+ LSGGQ+Q I IAR + ++LLDE TSA
Sbjct: 110 MQALDYLNLTHLA-------KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LD ++ +++S L L T + H+ V+ ++ ++++K
Sbjct: 159 LDLANQDIVLSLLIDLAQS--------QNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFG 210
Query: 1114 GSHSTLVAESQGVYSRLYQLQA 1135
+ + L +E + L+ L
Sbjct: 211 ETRNILTSE---NLTALFHLPM 229
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 28/230 (12%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ ++ ILKG SLS+ G+ V+++G+SG GKST++ ++ P+ G +
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 317 LIDSLNIKDLDLKSL----RKNIGAVSQE----PSLFTGSLMDNIKVGNMDADDEQIYNA 368
++ + + K L + +G V Q P L + ++N+ V +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIV-------PMLKMG 111
Query: 369 SMMANAHSFISQLPDQYSTELGQRGV----QLSGGQKQRIAIARAIVKNPPILLLDEATS 424
A L + LG + +LSGG++QR+AIARA+ P +L DE T
Sbjct: 112 KPKKEAKERGEYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 425 ALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473
LDS + K V + + G +++++ H ++DG+V
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 3e-27
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 34/238 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +NIK +L SL ++ G V+++G SG+GKS++L +L P EG +
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 946 LIDGKGIKEYN---LRRLRSQ-IGLV-QQEPLLFSCSIRNNIC----YGNEAASEAEI-- 994
++GK + N L LR++ +G V Q L+ + N+ + EA+
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG 121
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
+ + + D +S P +LSGG++QR+AIAR L P ++ DE T
Sbjct: 122 EYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112
LD+ + + ++ +N T+ + V H + + M G+VV
Sbjct: 171 LDSANTKRVMDIFLKIN---------EGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 64/239 (26%), Positives = 124/239 (51%), Gaps = 40/239 (16%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ I + ++ + P +L SLS+ G+++ ++G+SGCGK+T++ +A F P +G+I
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 317 LID--SLNIKDLDLKSLRKNIGAVSQEPSLF---TGSLMDNI----KVGNMDADDEQIYN 367
+ ++ K+ +L + +G + QE LF T + NI G E+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT--VYRNIAYGLGNGKGRTAQERQRI 119
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSAL 426
+M+ ++ + + L R +LSGGQ+QR A+ARA+ +P ++LLDE SAL
Sbjct: 120 EAMLE-----LTGISE-----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 427 DSESEKLVQEALERAMQ---GRTVILIAH------RMSTIVNADMIAVVEDGQVTETGT 476
D + + ++E + A G++ + ++H + + D IAV++ G++ +T +
Sbjct: 170 DEQLRRQIREDM-IAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 52/251 (20%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+ ++ ++ + VLN+ SL ++PG + ++G SG GK+++L L F P+ G
Sbjct: 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 945 ILIDGKGIKEYNL-----RRLRSQIGLVQQEPLLF-SCSIRNNICYG--NEAASEAEIVE 996
I + GK I N R ++G + QE +LF ++ NI YG N A+ +
Sbjct: 61 ISLSGKTIFSKNTNLPVRER---RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQ 117
Query: 997 VSKKA----NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
+ I + P +LSGGQ+QR A+AR L P ++LLDE
Sbjct: 118 RIEAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPF 166
Query: 1053 SALDA---ESERV-IVSALEALNPKSSSCGELASRTTQITVAH----RLATVINSDVIVV 1104
SALD R +++AL A + + V+H L +D I V
Sbjct: 167 SALDEQLRRQIREDMIAALRANG------------KSAVFVSHDREEALQY---ADRIAV 211
Query: 1105 MDKGEVVEMGS 1115
M +G +++ S
Sbjct: 212 MKQGRILQTAS 222
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 3e-30
Identities = 70/247 (28%), Positives = 122/247 (49%), Gaps = 44/247 (17%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + D+ Y +LKG SL AG +++++GSSG GKST + + PS G I
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 317 LIDSLNI-------------KDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI-----KVGN 357
+++ NI L+ LR + V Q +L++ ++++N+ +V
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 358 MDADDEQIYNASMMANAHSFISQ--LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415
+ D + A ++++ + ++ G+ V LSGGQ+QR++IARA+ P
Sbjct: 124 LSKHDAR-------ERALKYLAKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPD 173
Query: 416 ILLLDEATSALDSESEKLVQEAL----ERAMQGRTVILIAHRMS--TIVNADMIAVVEDG 469
+LL DE TSALD E LV E L + A +G+T++++ H M V + + + G
Sbjct: 174 VLLFDEPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV-SSHVIFLHQG 229
Query: 470 QVTETGT 476
++ E G
Sbjct: 230 KIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 67/251 (26%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI------- 952
VL SLQ G ++++G SG+GKS+ L + P+EG I+++G+ I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 953 ------KEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYG---------NEAASEA---- 992
+ LR LR+++ +V Q L+S ++ N+ ++A A
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
V + ++A P LSGGQ+QR++IAR L P ++L DE T
Sbjct: 138 AKVGIDERAQGK-----YPV-----------HLSGGQQQRVSIARALAMEPDVLLFDEPT 181
Query: 1053 SALDAE--SE--RVIVSALEALNPKSSSCGELA-SRTTQITVAHRLA---TVINSDVIVV 1104
SALD E E R++ +LA T + V H + V S ++
Sbjct: 182 SALDPELVGEVLRIMQ--------------QLAEEGKTMVVVTHEMGFARHV--SSHVIF 225
Query: 1105 MDKGEVVEMGS 1115
+ +G++ E G
Sbjct: 226 LHQGKIEEEGD 236
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-30
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 29/237 (12%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
L+ I G+++ +VG +G GK+T + ++A +P+ G I + DL K
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI--------EWDLTVAYK 352
Query: 334 NIGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
Q + G++ + + + + Y ++ I L D+ EL
Sbjct: 353 P-----QYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG--IIDLYDREVNEL--- 402
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILI 450
SGG+ QR+AIA ++++ I LLDE ++ LD E V A+ M+ +T +++
Sbjct: 403 ----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 458
Query: 451 AH--RMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
H M V +D + V E G+ + G + + NR + D T
Sbjct: 459 EHDVLMIDYV-SDRLMVFE-GEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-27
Identities = 70/377 (18%), Positives = 135/377 (35%), Gaps = 64/377 (16%)
Query: 248 KELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA- 306
++LE+ D Y L + G +V +VG +G GKST + ++A
Sbjct: 21 EQLEE--------DCVHRYGVNAFVLYR---LPVVKEGMVVGIVGPNGTGKSTAVKILAG 69
Query: 307 ----RFYD-PSNGDILIDSLNIKDL---DLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-- 356
+ D +I + +L K I V + + L+ G
Sbjct: 70 QLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YV-DLIPKAVKGKV 126
Query: 357 --NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414
+ DE ++ + + ++ LSGG+ QR+AIA A+++N
Sbjct: 127 IELLKKADETGKLEEVVKALE--LENVLEREIQ-------HLSGGELQRVAIAAALLRNA 177
Query: 415 PILLLDEATSALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVT 472
DE +S LD A+ R + +G++V+++ H ++ + +D+I VV
Sbjct: 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV 237
Query: 473 E---TGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEE 529
+ + ++F +N+R T E E++ V
Sbjct: 238 YGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLV--------- 288
Query: 530 SKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLV----VG--TVAAAFSGISKPLF 583
+ L G ++ + + + E++ +V +G T +G+ +P
Sbjct: 289 TYPRLVKDYGSFRLEVEP--------GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE 340
Query: 584 GFFIITIGVAYYDPQAK 600
G + VAY K
Sbjct: 341 GKIEWDLTVAYKPQYIK 357
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 9e-27
Identities = 61/252 (24%), Positives = 101/252 (40%), Gaps = 37/252 (14%)
Query: 865 RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924
R EI+ + + + + +Y S L +I+ G + +VGP+G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY 984
GK++ + +L +P EG I D + + + G V + L S +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE-GTVYE---LLSKIDAS---- 374
Query: 985 GNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044
+ S E+ K I D + +LSGG+ QR+AIA TLL+
Sbjct: 375 --KLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVI 1102
I LLDE ++ LD E + A+ L K + T + V H + + SD +
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEK--------NEKTALVVEHDVLMIDYV-SDRL 472
Query: 1103 VVMDKGEVVEMG 1114
+V + GE + G
Sbjct: 473 MVFE-GEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-21
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 34/228 (14%)
Query: 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN---------EGIILIDGK 950
+ ++ G+ V +VGP+G GKS+ + +L PN I G
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 951 GIKEYNLRRLRSQIGLVQQEPL--LFSCSIRNNICYGNEAASEAEIV-EVSKKANIHDFI 1007
++ Y + +I V + L +++ + + A E + EV K + + +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVL 152
Query: 1008 SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
LSGG+ QR+AIA LL+ DE +S LD A+
Sbjct: 153 EREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
Query: 1068 EALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
L + + V H LA + SD+I V+ GE G
Sbjct: 202 RRL---------SEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-29
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 48/239 (20%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+I + + L SL + +G+ ++G +G GK+ + L+A F+ P +G I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLF---TGSLMDNI----KVGNMDADDEQIYNAS 369
L+D ++ DL + +I V Q SLF + N+ ++ + D +++ + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMN--VKKNLEFGMRMKKIK-DPKRVLDTA 112
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
+ + P LSGG++QR+A+ARA+V NP ILLLDE SALD
Sbjct: 113 RDLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDP- 160
Query: 430 SEKL---VQEALERAMQ---GRTVILIAH------RMSTIVNADMIAVVEDGQVTETGT 476
+ +E L + TV+ I H M+ D IAVV DG++ + G
Sbjct: 161 --RTQENAREML-SVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 66/245 (26%), Positives = 116/245 (47%), Gaps = 50/245 (20%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +++ + + L+N SL++E G ++GP+GAGK+ L L+ F+ P+ G I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 946 LIDGKGIKEYNL---RRLRSQIGLVQQEPLLFS-CSIRNNICYG--NEAASEAEIV-EVS 998
L+DGK + +L + I V Q LF +++ N+ +G + + + V + +
Sbjct: 58 LLDGKDVT--DLSPEKH---DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA 112
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA- 1057
+ I + P LSGG++QR+A+AR L+ P I+LLDE SALD
Sbjct: 113 RDLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 1058 --ESERVIVSAL-EALNPKSSSCGELASRTTQITVAH----RLATVINSDVIVVMDKGEV 1110
E+ R ++S L + T + + H +D I V+ G++
Sbjct: 162 TQENAREMLSVLHKKNK------------LTVLHITHDQTEARIM---ADRIAVVMDGKL 206
Query: 1111 VEMGS 1115
+++G
Sbjct: 207 IQVGK 211
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 34/213 (15%)
Query: 279 SLSIPAGK-MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337
++ G+ L+G +G GKS + L+A P G++ ++ +I L R+ IG
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGF 74
Query: 338 VSQEPSLFTG-SLMDNIKVG--NMDAD--DEQIYNASMMANAHSFISQLPDQYSTELGQR 392
V Q+ +LF S+ NI G N++ D ++ + + + P
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--------- 125
Query: 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ---GRTVIL 449
+LSGG++QR+A+ARA+V P +LLLDE SA+D +++ ++ E L R +Q ++
Sbjct: 126 --RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILH 182
Query: 450 IAH------RMSTIVNADMIAVVEDGQVTETGT 476
+ H ++ D +AV+ +G++ E G
Sbjct: 183 VTHDLIEAAMLA-----DEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 30/216 (13%)
Query: 908 SLQIEPGLK-VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966
++ E G L+GP+GAGKS L L+ P+ G + ++G I L R IG
Sbjct: 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGF 74
Query: 967 VQQEPLLFS-CSIRNNICYGNEAASEAEI----VEVSKKANIHDFISSLPDGYDTVVGEK 1021
V Q+ LF S+ NI YG E E+++K I + P
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--------- 125
Query: 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA 1081
+LSGG++QR+A+AR L+ +P ++LLDE SA+D +++ V++ L + +
Sbjct: 126 --RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD------ 177
Query: 1082 SRTTQITVAH--RLATVINSDVIVVMDKGEVVEMGS 1115
+ V H A ++ +D + VM G +VE G
Sbjct: 178 --VPILHVTHDLIEAAML-ADEVAVMLNGRIVEKGK 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 42/220 (19%), Positives = 97/220 (44%), Gaps = 27/220 (12%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++IRD+ Y D+ +L+ +++I G +V G +G GK+T++ ++ + P G+I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASM--MANA 374
+ + + I + + I + +E + + +D AS+ +
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPR----------KISVEDYLKAVASLYGVKVN 111
Query: 375 HSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
+ I + +L ++ +LS G +R+ +A ++ N I +LD+ A+D +S+
Sbjct: 112 KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171
Query: 434 VQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQV 471
V +++ + +G +I +S D+ +
Sbjct: 172 VLKSILEILKEKGIVIISSREELSY---CDVNENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 47/240 (19%), Positives = 98/240 (40%), Gaps = 49/240 (20%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E +++ Y + VL ++ IE G V GP+G GK+++L + + P +G I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP-----------LLFSCSIRNNICYGNEAASEAEI 994
+ +G + +++ +I + +E L S+ YG + ++ EI
Sbjct: 67 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASL-----YGVKV-NKNEI 115
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
++ + + D + +K +LS G +R+ +A TLL I +LD+ A
Sbjct: 116 MDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
+D +S+ ++ ++ + + I+ L+ DV + K
Sbjct: 164 IDEDSKHKVLKSILEILKEKG--------IVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-28
Identities = 53/236 (22%), Positives = 97/236 (41%), Gaps = 27/236 (11%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
L+ I G+++ +VG +G GK+T + ++A +P+ G + D L + +
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAE 429
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
G V + L + + + Y ++ I L D+ +L
Sbjct: 430 YEGTVYE---LLSKIDSSKL--------NSNFYKTELLKPLG--IIDLYDRNVEDL---- 472
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIA 451
SGG+ QR+AIA ++++ I LLDE ++ LD E V A+ M+ +T +++
Sbjct: 473 ---SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 452 H--RMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
H M V +D + V E G+ G + + NR + D +
Sbjct: 530 HDVLMIDYV-SDRLIVFE-GEPGRHGRALPPMGMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 9e-27
Identities = 56/293 (19%), Positives = 107/293 (36%), Gaps = 41/293 (13%)
Query: 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD---- 315
D Y + +L + G +V +VG +G GK+T + ++A P+ +
Sbjct: 95 EDCVHRY--GVNAFVLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 316 --ILIDSLNIKDL---DLKSLRKNIGAVSQE------PSLFTGSLMDNIKVGNMDADDEQ 364
+I + +L + I V + P G + + +K +D +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK--KVDEVGKF 209
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ + + D+ QLSGG+ QR+AIA A+++ DE +S
Sbjct: 210 EEVVKELE-----LENVLDRELH-------QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 425 ALDSESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTE---TGTHHS 479
LD V + R A +G+ V+++ H ++ + +D+I VV + +
Sbjct: 258 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGT 317
Query: 480 LLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKR 532
++F +N+R R S + +E P K
Sbjct: 318 RNGINEFLQGYLKDENVR----FRPYEIRFTKLSERVDVERETLVEYPRLVKD 366
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 35/251 (13%)
Query: 865 RKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924
R EI + +E+ + +Y S L +I G + +VGP+G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY 984
GK++ + +L +P EG + D + + + G V + L S +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE-GTVYE---LLSKIDSS---- 444
Query: 985 GNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044
+ S E+ K I D + LSGG+ QR+AIA TLL+
Sbjct: 445 --KLNSNFYKTELLKPLGIIDLYDRNVE-----------DLSGGELQRVAIAATLLRDAD 491
Query: 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIV 1103
I LLDE ++ LD E + A+ L K+ + V H + + SD ++
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA--------LVVEHDVLMIDYVSDRLI 543
Query: 1104 VMDKGEVVEMG 1114
V + GE G
Sbjct: 544 VFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 9e-24
Identities = 55/247 (22%), Positives = 89/247 (36%), Gaps = 42/247 (17%)
Query: 886 IEFQNIKFNYPSRP-----EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
I N+ + ++ G+ V +VGP+G GK++ + +L P
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 941 NEG---------IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991
N I G ++ Y R +I V + + E +
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY-VDLLPKAVKGKVRELLKK 202
Query: 992 AEIV----EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047
+ V EV K+ + + + QLSGG+ QR+AIA LL++
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYF 251
Query: 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASR-TTQITVAHRLATVIN-SDVIVVM 1105
DE +S LD R+ V+ + LA+ + V H LA + SDVI V+
Sbjct: 252 FDEPSSYLDIRQ-RLKVARVIR---------RLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
Query: 1106 DKGEVVE 1112
V
Sbjct: 302 YGEPGVY 308
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 31/218 (14%)
Query: 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333
L S + AG+++ LVG +G GKST+++ +A G I ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 334 NIGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392
+ +SQ+ + F + + + D ++ N A A + R
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA-----------LDDKLGR 122
Query: 393 GV-QLSGGQKQRIAIARAIV-------KNPPILLLDEATSALDSESEKLVQEALER-AMQ 443
QLSGG+ QR+ +A ++ +LLLDE ++LD + + + L + Q
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182
Query: 444 GRTVILIAHRMSTIVN-----ADMIAVVEDGQVTETGT 476
G +++ +H + N A +++ G++ +G
Sbjct: 183 GLAIVMSSHDL----NHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 41/229 (17%)
Query: 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961
T L S ++ G + LVGP+GAGKS++LA + +G I G+ ++ ++ +L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 962 SQIGLV-QQEPLLFSCSIRNNICYGNEAASEAEIV-EVSKKANIHDFISSLPDGYDTVVG 1019
+ QQ+ F+ + + + + E++ +V+ + D + +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS---TNQ--- 126
Query: 1020 EKGCQLSGGQKQRIAIARTLL-------KRPAIMLLDEATSALDAESERVIVSALEALNP 1072
LSGG+ QR+ +A +L ++LLDE ++LD +
Sbjct: 127 -----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD------VAQQSALDK- 174
Query: 1073 KSSSCGELASR-TTQITVAHRLATVIN-----SDVIVVMDKGEVVEMGS 1115
L+ + + +H L N + ++ G+++ G
Sbjct: 175 ---ILSALSQQGLAIVMSSHDL----NHTLRHAHRAWLLKGGKMLASGR 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-27
Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 37/240 (15%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I +++V + + L +++I G+ ++G SG GK+T + ++A PS G+
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 316 ILIDSLNIKDLDLKSL---RKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DEQI 365
+ D + + + IG V Q +L+ + +NI M + +++
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ + + I + + + +LSG Q+QR+A+ARA+VK+P +LLLDE S
Sbjct: 122 EEVAKILD----IHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 426 LDSESEKL-VQEALE-RAMQ---GRTVILIAH----RMSTIVNADMIAVVEDGQVTETGT 476
LD+ ++ + +Q G T+++++H I AD + V+ G++ + G
Sbjct: 171 LDA---RMRDSARALVKEVQSRLGVTLLVVSHDPADIF-AI--ADRVGVLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 6e-25
Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 47/250 (18%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
RI +N+ + +V L+N ++ IE G + ++GPSGAGK++ + ++ P+ G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 945 ILIDGKGIKEYNLRRLRSQ---IGLVQQEPLLF-SCSIRNNICYG--NEAASEAEI---- 994
+ D + + + + IG+V Q L+ + + NI + N S+ EI
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
EV+K +IH ++ P +LSG Q+QR+A+AR L+K P+++LLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1055 LDA---ESERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVM 1105
LDA +S R +V +++ L T + V+H +A D + V+
Sbjct: 171 LDARMRDSARALVKEVQS---------RL--GVTLLVVSHDPADIFAIA-----DRVGVL 214
Query: 1106 DKGEVVEMGS 1115
KG++V++G
Sbjct: 215 VKGKLVQVGK 224
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 54/259 (20%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ ++++ + +L S +IE G L+GP+GAGK++ L ++ P+ GI+
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP-----------LLFSCSIRNNICYG-NEAASEAE 993
+ GK + E +R I + +E L F Y + + E
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----YASSSSEIEEM 126
Query: 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053
+ ++ A + + I Y S G +++ IAR L+ P + +LDE TS
Sbjct: 127 VERATEIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 1054 ALDAESERVIVSALEALNPKSSSCGELASR------TTQI-TVAHRLATVINSDVIVVMD 1106
LD + R + L+ + + ++ L D I ++
Sbjct: 176 GLDVLNAREVRKILK----------QASQEGLTILVSSHNMLEVEFLC-----DRIALIH 220
Query: 1107 KGEVVEMGSHSTLVAESQG 1125
G +VE G+ L +
Sbjct: 221 NGTIVETGTVEELKERYKA 239
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 29/225 (12%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS 330
+ ILKG S I G++ L+G +G GK+T + +++ PS+G + + N+ + +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 331 LRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL- 389
+RK I + +E + NM + +A ++ S ++
Sbjct: 86 VRKLISYLPEEAGAY----------RNMQGIE----YLRFVAGFYASSSSEIEEMVERAT 131
Query: 390 ---------GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440
R S G +++ IARA++ NP + +LDE TS LD + + V++ L++
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 441 -AMQGRTVILIAHRMSTIVNA--DMIAVVEDGQVTETGTHHSLLQ 482
+ +G T+++ +H M V D IA++ +G + ETGT L +
Sbjct: 192 ASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 38/237 (16%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I + ++ + + L +L I G+ +AL+G SG GKST++ +A Y P++G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DEQIYNA 368
I D ++ +L K +N+G V Q +L+ ++ NI ++ + D+++
Sbjct: 60 IYFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ M + I +L L + QLSGGQ+QR+AIARA+VK P +LLLDE S LD+
Sbjct: 118 AKMLH----IDKL-------LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 429 ESEKL-VQEALE-RAMQGR---TVILIAH----RMSTIVNADMIAVVEDGQVTETGT 476
L ++ E + +Q T + + H + + AD IAV+ +G++ + GT
Sbjct: 167 ---LLRLEVRAELKRLQKELGITTVYVTHDQAEAL-AM--ADRIAVIREGEILQVGT 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 4e-20
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 58/252 (23%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ +NI + + T LNN +L+I+ G +AL+GPSG+GKS++L + Y P G
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 945 ILIDGKGI-----KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA--SEAEI-- 994
I D K + K+ N +GLV Q L+ ++ NI + E EI
Sbjct: 60 IYFDEKDVTELPPKDRN-------VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK 112
Query: 995 --VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEAT 1052
EV+K +I ++ P QLSGGQ+QR+AIAR L+K P ++LLDE
Sbjct: 113 KVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPL 161
Query: 1053 SALDAE---SERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIV 1103
S LDA R + L+ EL T + V H +A D I
Sbjct: 162 SNLDALLRLEVRAELKRLQK---------EL--GITTVYVTHDQAEALAMA-----DRIA 205
Query: 1104 VMDKGEVVEMGS 1115
V+ +GE++++G+
Sbjct: 206 VIREGEILQVGT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 1e-22
Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 38/237 (16%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+I + ++ + + G S + G+ VAL+G SGCGK+T + ++A Y P++G+
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DEQIYNA 368
I D + + D+ K + +G V Q +L+ ++ +NI + + D ++++
Sbjct: 60 IYFDDVLVNDIPPKY--REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ I L L ++ QLSGGQ+QR+A+ARA+VK P +LL DE S LD+
Sbjct: 118 ARKLL----IDNL-------LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 429 ESEKL-VQEALE-RAMQGR---TVILIAH----RMSTIVNADMIAVVEDGQVTETGT 476
L + E + +Q T + + H M T+ A IAV G++ + GT
Sbjct: 167 ---NLRMIMRAEIKHLQQELGITSVYVTHDQAEAM-TM--ASRIAVFNQGKLVQYGT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-18
Identities = 71/249 (28%), Positives = 111/249 (44%), Gaps = 52/249 (20%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I N+K + V ++ S +++ G VAL+GPSG GK++ L +L Y P G
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 945 ILIDGKGI-----KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG--NEAASEAEIVE 996
I D + K +G+V Q L+ ++ NI + S+ E+ +
Sbjct: 60 IYFDDVLVNDIPPKYRE-------VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK 112
Query: 997 -VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
V + A I +L D K QLSGGQ+QR+A+AR L+K+P ++L DE S L
Sbjct: 113 RVVEIARKLL-IDNLLD-------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNL 164
Query: 1056 DAE---SERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMD 1106
DA R + L+ EL T + V H +A I V +
Sbjct: 165 DANLRMIMRAEIKHLQQ---------EL--GITSVYVTHDQAEAMTMA-----SRIAVFN 208
Query: 1107 KGEVVEMGS 1115
+G++V+ G+
Sbjct: 209 QGKLVQYGT 217
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 3e-22
Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 48/242 (19%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+ + ++ + + + +L+I G+ + L+G SGCGK+T + ++A +P+ G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DEQIYNA 368
I ++ L K +NI V Q +++ ++ +NI K+ D D+++ A
Sbjct: 68 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
+ + I +L L + QLSGGQ+QR+A+ARAIV P +LL+DE S LD+
Sbjct: 126 AELLQ----IEEL-------LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 429 ESEKL-VQEALERAMQGRTVILIAHRM--STIV-----------NADMIAVVEDGQVTET 474
KL V M R I + T + D IAV+ GQ+ +
Sbjct: 175 ---KLRVA------M--RAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223
Query: 475 GT 476
G+
Sbjct: 224 GS 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 64/249 (25%), Positives = 116/249 (46%), Gaps = 52/249 (20%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
++ +N+ + + T +N +L I+ G + L+GPSG GK++ L ++ +P EG
Sbjct: 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 945 ILIDGKGI-----KEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG--NEAASEAEIVE 996
I + + K+ N I +V Q ++ ++ NI + + + EI +
Sbjct: 68 IYFGDRDVTYLPPKDRN-------ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK 120
Query: 997 -VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
V A + I L + QLSGGQ+QR+A+AR ++ P ++L+DE S L
Sbjct: 121 RVRWAAELLQ-IEELLN-------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 172
Query: 1056 DAE---SERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMD 1106
DA+ + R + L+ +L + T I V H + D I VM+
Sbjct: 173 DAKLRVAMRAEIKKLQQ---------KL--KVTTIYVTHDQVEAMTMG-----DRIAVMN 216
Query: 1107 KGEVVEMGS 1115
+G+++++GS
Sbjct: 217 RGQLLQIGS 225
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 8e-21
Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 52/247 (21%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+ + DV + + ++ SL + G+ + L+G SGCGK+T + ++A +PS G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 316 ILIDSLNIKDLDLKSL-----RKNIGAVSQEPSLF-TGSLMDNI----KVGNMDAD--DE 363
I I + D + R +I V Q +L+ ++ DNI K+ + D+
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDR-DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423
++ + + +++L L ++ +LSGGQ+QR+A+ RAIV+ P + L+DE
Sbjct: 119 RVREVAELLG----LTEL-------LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 424 SALDSESEKL-VQEALERAMQGRTVILIAHRM--STIV-----------NADMIAVVEDG 469
S LD+ KL V+ M R + R T + D IAV+ G
Sbjct: 168 SNLDA---KLRVR------M--RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
Query: 470 QVTETGT 476
+ + G+
Sbjct: 217 VLQQVGS 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 2e-16
Identities = 61/248 (24%), Positives = 112/248 (45%), Gaps = 44/248 (17%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
+ ++ + VT + SL+++ G + L+GPSG GK++ L ++ +P+ G
Sbjct: 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 945 ILIDGKGIKEYNLRRLRS----QIGLVQQEPLLF-SCSIRNNICYGNEAA--SEAEIVE- 996
I I K + + I +V Q L+ ++ +NI + + EI +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 997 VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
V + A + ++ L + K +LSGGQ+QR+A+ R ++++P + L+DE S LD
Sbjct: 120 VREVAELLG-LTELLN-------RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
Query: 1057 AE---SERVIVSALEALNPKSSSCGELASRTTQITVAH------RLATVINSDVIVVMDK 1107
A+ R + L+ +L T I V H + D I VM++
Sbjct: 172 AKLRVRMRAELKKLQR---------QL--GVTTIYVTHDQVEAMTMG-----DRIAVMNR 215
Query: 1108 GEVVEMGS 1115
G + ++GS
Sbjct: 216 GVLQQVGS 223
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 46/241 (19%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
++ +++V A+ + ++ K +L I G+ V VG SGCGKST++ ++A ++GD
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQE----PSLFTGSLMDNI----KVGNMDAD--DEQI 365
+ I + D + +G V Q P L S+ +N+ K+ + ++++
Sbjct: 60 LFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVINQRV 114
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ + QL L ++ LSGGQ+QR+AI R +V P + LLDE S
Sbjct: 115 NQVAE-------VLQL-AHL---LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 426 LDSESEKL-VQ-----EALERAMQGRTVILIAH----RMSTIVNADMIAVVEDGQVTETG 475
LD+ L VQ L + + GRT+I + H M T+ AD I V++ G+V + G
Sbjct: 164 LDA---ALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAM-TL--ADKIVVLDAGRVAQVG 216
Query: 476 T 476
Sbjct: 217 K 217
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-14
Identities = 78/256 (30%), Positives = 110/256 (42%), Gaps = 68/256 (26%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY----DPN 941
++ QN+ + EV V + +L I G V VGPSG GKS+ LLR
Sbjct: 4 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLETIT 56
Query: 942 EGIILIDGKGI-----KEYNLRRLRSQIGLVQQE----PLLFSCSIRNNICYG--NEAAS 990
G + I K + E +G+V Q P L S+ N+ +G A
Sbjct: 57 SGDLFIGEKRMNDTPPAERG-------VGMVFQSYALYPHL---SVAENMSFGLKLAGAK 106
Query: 991 EAEIVE-VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD 1049
+ I + V++ A + ++ L D K LSGGQ+QR+AI RTL+ P++ LLD
Sbjct: 107 KEVINQRVNQVAEVLQ-LAHLLD-------RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
Query: 1050 EATSALDAE---SERVIVSAL-EALNPKSSSCGELASRTTQITVAH------RLATVINS 1099
E S LDA R+ +S L + L T I V H LA
Sbjct: 159 EPLSNLDAALRVQMRIEISRLHKRLG------------RTMIYVTHDQVEAMTLA----- 201
Query: 1100 DVIVVMDKGEVVEMGS 1115
D IVV+D G V ++G
Sbjct: 202 DKIVVLDAGRVAQVGK 217
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 28/222 (12%)
Query: 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RK 333
L G S+S+ G + ++G +G GKST+I+++ F G + ++ +I + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 334 NIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNAS-----------MMANAHSF---- 377
I Q P ++++N+ +G E N+ M+ A
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIG-EICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 378 -ISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-DSESEKLVQ 435
+S L D+ + +LSGGQ + + I RA++ NP ++++DE + + + +
Sbjct: 142 KLSHLYDRKAG-------ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 436 EALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476
LE +G T ++I HR+ ++N D + V+ +GQ+ G
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 53/240 (22%), Positives = 95/240 (39%), Gaps = 48/240 (20%)
Query: 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYNL 957
L+ S+ + G ++GP+G+GKS+++ ++ F +EG + + K + L
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 958 RRLRSQIGLVQ--QEPLLFS-------------CSIRNNI---CYGNEAASEAEIVEVSK 999
G+V+ Q P C + + Y E E+VE K
Sbjct: 80 YHY----GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--K 133
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
I +F+ + K +LSGGQ + + I R L+ P ++++DE + +
Sbjct: 134 AFKILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVA---HRLATVIN-SDVIVVMDKGEVVEMGS 1115
I + + L + IT HRL V+N D + VM G+++ G
Sbjct: 189 AHDIFNHVLEL------------KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 53/239 (22%)
Query: 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL- 331
+KG L +P G++V L+G++G GK+T +S +A G I+ + +I + +
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVIN 79
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVG--------NMDADDEQIYNASMMANAHSFISQLP 382
R I V + +F ++ +N+ +G + D E I+
Sbjct: 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF---------------- 123
Query: 383 DQYSTEL--------GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
L Q G LSGG++Q +AI RA++ P +L++DE + L + LV
Sbjct: 124 -----SLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---APILV 175
Query: 435 QEALE-----RAMQGRTVILI---AHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
E E +G T++L+ A + A V+E GQ+ G LL
Sbjct: 176 SEVFEVIQKINQ-EGTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 9e-12
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946
E Q++ Y + + + L++ G V L+G +GAGK++ L+ + +G I+
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 947 IDGKGIKEYNL-RRLRSQIGLVQQEPLLF-SCSIRNNICYG-----NEAASEAEIVEVSK 999
+G+ I R I LV + +F ++ N+ G ++ + ++ +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-- 122
Query: 1000 KANIHDFISSLPDGYDT--VVGEKGCQ----LSGGQKQRIAIARTLLKRPAIMLLDE 1050
+ + E+ Q LSGG++Q +AI R L+ RP ++++DE
Sbjct: 123 --------------FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 2e-14
Identities = 46/322 (14%), Positives = 90/322 (27%), Gaps = 94/322 (29%)
Query: 827 RAYQIFSLTVPSITELWTLIPTVISAI-----TVLAPAFEILDRKTEIEPDAPESSESGR 881
++F WTL+ + VL ++ L + E P
Sbjct: 63 GTLRLF----------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 882 IKGRIEFQN-----IKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936
I+ R N K+N L L++ P V + G G+GK+ V +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 937 FYD----PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA 992
Y + I + NL+ S +++ + Y + +
Sbjct: 173 SYKVQCKMDFKIFWL--------NLKNCNSPETVLEML---------QKLLYQIDPNWTS 215
Query: 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP----AIMLL 1048
D S++ ++ + + R LLK +++L
Sbjct: 216 RS----------DHSSNIKLRIHSI------------QAEL---RRLLKSKPYENCLLVL 250
Query: 1049 DEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108
+ ++ + A N C +I + R V D +
Sbjct: 251 L------NVQNAKAW----NAFNLS---C--------KILLTTRFKQVT--DFLSAATTT 287
Query: 1109 EVVEMGSHSTLV-AESQGVYSR 1129
+ TL E + + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLK 309
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 108/678 (15%), Positives = 202/678 (29%), Gaps = 190/678 (28%)
Query: 112 YLSEATSMIEQTISQIKTVF--AFVGERSEIKSFSDCMD-----KQIIISRGEALIKGVG 164
++ T + I +VF AFV +F DC D K I+ I +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFV------DNF-DCKDVQDMPKSILSKEEIDHI--IM 56
Query: 165 LGMFQSVTFCCWALIIWVGAVVVTAKRSTG-----GEVLAAVMSILFGAIALTYAAPDMQ 219
S T + W + +K+ EVL L I P M
Sbjct: 57 SKDAVSGTL----RLFWT----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM- 107
Query: 220 VFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDI---RDVCFAYPSRPDQLI-L 275
Y + +++ + + +V SR + L
Sbjct: 108 -------------------MTRMYIE---QRDRLYNDNQVFAKYNV-----SRLQPYLKL 140
Query: 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335
+ L + K V + G G GK+ V V K K
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCL-------------------SYKVQCKMD 181
Query: 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFI----SQLPDQYSTELGQ 391
+ F + + N ++ + + M+ I + D S+ +
Sbjct: 182 FKI------FW------LNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDH-SSNIKL 225
Query: 392 RGVQLSGGQKQRIAIARAIVKNPP----ILLLDEATSALDSESEKLVQEALERAMQGRTV 447
R + + + R ++K+ P +L+L + ++ K A
Sbjct: 226 RIHSI----QAEL---RRLLKSKPYENCLLVLL------NVQNAKAW-----NAFNLSCK 267
Query: 448 ILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF------TMQNLRP--- 498
IL+ R + D ++ ++ HHS+ T D L Q+L
Sbjct: 268 ILLTTRFKQV--TDFLSAATTTHISL--DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 499 -------------IDD-----SRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQ 540
I D K + +T + S + LE E K S
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFP 382
Query: 541 EEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAK 600
+ IWF + + +++ +V +S + K I+I Y + + K
Sbjct: 383 PSAHIPTILL-SLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKE-STISIPSIYLELKVK 438
Query: 601 QE---------VGWYSLAFSLVGLFSLFTHTLQHYFFGVVG------EKA-MTNLRRTLY 644
E V Y++ + L L YF+ +G E L R ++
Sbjct: 439 LENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 645 T--GVLRNEIAWFEKPQNDAGSLTS----------RIVSDTSMVKAIISDRMSVIVQCIS 692
L +I N +GS+ + I + + +++ + + +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 693 SILIATIVSLVVDWRMAL 710
+++ + L+ R+AL
Sbjct: 558 NLICSKYTDLL---RIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-07
Identities = 92/639 (14%), Positives = 188/639 (29%), Gaps = 214/639 (33%)
Query: 44 HM----SVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEV-----SLLIFLVVPMILVI 94
HM + + L F +F F C +V S+L + I++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFD--------CKDVQDMPKSILSKEEIDHIIMS 57
Query: 95 GATYTKRMNAVSATKLLY---LSEATSMIEQTISQI-KTVFAFVGER---------SEIK 141
+AVS T L+ LS+ M+++ + ++ + + F+ +
Sbjct: 58 K-------DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 142 SFSDCMDK-----QII----ISRGEALIK------------GVGL-GMF---QSV----- 171
+ + D+ Q+ +SR + +K V + G+ ++
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 172 -----TFCCWAL-IIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAK 225
C I W+ K E + ++ L I + + + +
Sbjct: 171 CLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQKLLYQIDPNWTSRS----DHSS 221
Query: 226 AAGFEIFQVIQRKPRISYSSKGKE-LEKIDGNIDIRDVCFAYPSRPDQLILKGFSLS--- 281
I + R+ S + L + + +V + F+LS
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL------LVLLNVQ-------NAKAWNAFNLSCKI 268
Query: 282 --IPAGKMVALVGSSGCGKSTVISLVAR---FYDPSNGDILIDSLNIKDLDLKSLRKN-- 334
K V S+ +T ISL +L+ L+ + DL
Sbjct: 269 LLTTRFKQVTDFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 335 ------IGA-VSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST 387
I + + + DN K N D I S ++ L
Sbjct: 327 PRRLSIIAESIRDGLATW-----DNWKHVNCDKLTTII---------ESSLNVLE---PA 369
Query: 388 ELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSAL-----DSESEKLVQE-----A 437
E + +L ++ P ILL S + S+ +V +
Sbjct: 370 EYRKMFDRL--------SVFPPSAHIPTILL-----SLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 438 LERAMQGRTVIL---------------IAHRMSTIVNA----------DMIAVVEDGQVT 472
+E+ + T+ + HR +IV+ D+I D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 473 ETGTHH----SLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPE 528
HH + + +F + R + + + + + ++ ++ ++QL+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVF--LDFRFL-EQKIRHDSTAWNASGSILNTLQQLK--- 528
Query: 529 ESKRELSASTGQEEVKGKRTTIFFRIWFCLNERELLRLV 567
F++ + C N+ + RLV
Sbjct: 529 ----------------------FYKPYICDNDPKYERLV 545
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-07
Identities = 96/664 (14%), Positives = 180/664 (27%), Gaps = 202/664 (30%)
Query: 452 HRMSTIVNA------DMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTK 505
H M D+++V ED V D + + + + I S+
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPKSILSKEEIDHIIMSKDA 60
Query: 506 ASTVE---STSTEQQISVVEQ-LEEPEESKRELSASTGQEEVKGK--RTTIFF----RIW 555
S T +Q +V++ +EE + S + E + T ++ R++
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 556 FCLNE----------RE---------LLRL-------VVG------TVAAA-----FSGI 578
N+ R LL L + G T A +
Sbjct: 121 ---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 579 SKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTN 638
K F F + + P+ E+ L + + ++ + + +
Sbjct: 178 CKMDFKIFWLNLK-NCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRI--HSIQAE 233
Query: 639 LRRTL----YTG---VLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCI 691
LRR L Y VL N V + A + + C
Sbjct: 234 LRRLLKSKPYENCLLVLLN-------------------VQNAKAWNAF--N-----LSC- 266
Query: 692 SSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSES 751
IL+ T V D+ A + H L + L E
Sbjct: 267 -KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPREV 322
Query: 752 ASN----IRTVASFCHE-----ENILQKAKISLEKTKRSS---------RK--------- 784
+ + +A + +N L SS RK
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 785 ESIKYGVIQGFSLC-LWN------IAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVP 837
S I L +W + V + L++K+ I I+
Sbjct: 383 PSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKV 437
Query: 838 SITELWTLIPTVISAITVLAPAFEILDR--KTEIEPDAPES----------SESGRIKGR 885
+ + L +++ + I ++ P + +
Sbjct: 438 KLENEYALHRSIVD-------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALL--LRFY----- 938
F+ + ++ F +E K+ + S+L L L+FY
Sbjct: 491 TLFRMVFLDF----------RF---LEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 939 --DP-NEGII--LIDGKGIKEYNLRRLRS----QIGLVQQEPLLFSCSIRNNICYGNEAA 989
DP E ++ ++D E NL + +I L+ ++ +F EA
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF-----------EEAH 584
Query: 990 SEAE 993
+ +
Sbjct: 585 KQVQ 588
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 2e-14
Identities = 44/242 (18%), Positives = 90/242 (37%), Gaps = 37/242 (15%)
Query: 218 MQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRP--DQLIL 275
+ + + ++ + + + D + D+C S +++L
Sbjct: 392 ITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILL 451
Query: 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN- 334
L + + + G +GCGKST++ +A +D ++
Sbjct: 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN----------------GQVDGFPTQEEC 495
Query: 335 -IGAVSQEPSLFTG--SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQ 391
V + S++D + + + + + ++ E+
Sbjct: 496 RTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA----------IKDKLIEF--GFTDEMIA 543
Query: 392 RGV-QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILI 450
+ LSGG K ++A+ARA+++N ILLLDE T+ LD+ + + L G T I I
Sbjct: 544 MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITI 601
Query: 451 AH 452
+H
Sbjct: 602 SH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 5e-14
Identities = 37/255 (14%), Positives = 84/255 (32%), Gaps = 32/255 (12%)
Query: 813 VLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPD 872
+L D+ A + Y + + K ++
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 873 APESSESGRIK-----GRIEFQNIKFNYPSRP--EVTVLNNFSLQIEPGLKVALVGPSGA 925
+ ++ + E +++ S +LN L+++ + + GP+G
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGC 472
Query: 926 GKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI-RNNICY 984
GKS+++ + +G + + V+ + + +
Sbjct: 473 GKSTLMRAIANGQV--DGFPTQEE------------CRTVYVEHDIDGTHSDTSVLDFVF 518
Query: 985 GNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044
+ ++ I + + D + + LSGG K ++A+AR +L+
Sbjct: 519 ESGVGTKEAIKDKLIEFGFTD------EMIAMPISA----LSGGWKMKLALARAVLRNAD 568
Query: 1045 IMLLDEATSALDAES 1059
I+LLDE T+ LD +
Sbjct: 569 ILLLDEPTNHLDTVN 583
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 9e-12
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAH 452
LSGGQK ++ +A + P +++LDE T+ LD +S AL +A++ VI+I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS----LGALSKALKEFEGGVIIITH 956
Query: 453 RMSTIVN-ADMIAVVEDGQVT 472
N + + V+DG++T
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSAL 1067
LSGGQK ++ +A +RP +++LDE T+ LD +S + AL
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKAL 944
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 3e-07
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
+ K ++ N++F YP + + + + Q ++A++GP+GAGKS+++ +L P
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 941 NEGII 945
G +
Sbjct: 726 TSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 7e-07
Identities = 26/204 (12%), Positives = 65/204 (31%), Gaps = 22/204 (10%)
Query: 245 SKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL 304
+K K + K+ ++ F YP + + + +A++G +G GKST+I++
Sbjct: 666 TKQKAIVKV------TNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718
Query: 305 VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQ 364
+ P++G++ N + I + Q S +D + +
Sbjct: 719 LTGELLPTSGEVYTHE-NCR----------IAYIKQHAFAHIESHLDKTPSEYIQWRFQT 767
Query: 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
+ M A+ I++ + ++ ++ G ++ I
Sbjct: 768 GEDRETMDRANRQINENDAEAMNKIF----KIEGTPRRIAGIHSRRKFKNTYEYECSFLL 823
Query: 425 ALDSESEKLVQEALERAMQGRTVI 448
+ + +
Sbjct: 824 GENIGMKSERWVPMMSVDNAWIPR 847
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 389 LGQRGVQLSGGQKQRIAIA------RAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442
+ LSGG++ + +A + +L+LDE T LD E + + +ER +
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 443 -QGRTVILIAHRMSTIVNADMI 463
+ VIL++H AD +
Sbjct: 111 KKIPQVILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 27/143 (18%)
Query: 986 NEAASE--AEIVEVSKKANIHDFISSLPD---GYDTVVGEKGCQLSGGQKQRIAIARTLL 1040
E ASE AE E + + ++ LSGG++ + +A L
Sbjct: 15 GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGK-ERPLTFLSGGERIALGLAFRLA 73
Query: 1041 KRPA------IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094
+++LDE T LD E R +++ +E K I V+H
Sbjct: 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP---------QVILVSHDEE 124
Query: 1095 TVINSDVIVVMDK------GEVV 1111
+D ++ + EVV
Sbjct: 125 LKDAADHVIRISLENGSSKVEVV 147
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 9e-10
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 395 QLSGGQKQ------RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTV 447
LSGG++ R+A++ + +L+LDE T LD E + + +ER ++ V
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 448 ILIAHRMSTIVNADMIAVVE 467
IL++H AD + +
Sbjct: 308 ILVSHDEELKDAADHVIRIS 327
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC-----QLSGGQKQ------RIAIARTL 1039
E ++ + + + V +G LSGG++ R+A++ L
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269
Query: 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099
++++LDE T LD E R +++ +E K I V+H +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP---------QVILVSHDEELKDAA 320
Query: 1100 DVIVVMDK------GEVV 1111
D ++ + EVV
Sbjct: 321 DHVIRISLENGSSKVEVV 338
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 52/243 (21%), Positives = 97/243 (39%), Gaps = 65/243 (26%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLD- 327
D+ IL+G SL + G++ A++G +G GKST+ + +A Y+ + G + ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 328 ------------------------------LKSLRKNIGAVSQEPSLFTGSLMDNIKVGN 357
L ++R G + + F + + I +
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQ--LSGGQKQRIAIARAIVKNPP 415
M D L R V SGG+K+R I + V P
Sbjct: 152 MPED---------------------------LLTRSVNVGFSGGEKKRNDILQMAVLEPE 184
Query: 416 ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAH--RMSTIVNADMIAVVEDGQVT 472
+ +LDE+ S LD ++ K+V + + R+ I++ H R+ + D + V+ G++
Sbjct: 185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244
Query: 473 ETG 475
++G
Sbjct: 245 KSG 247
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 43/234 (18%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL---RFYDPNEGIILIDGKGIKEYNL-R 958
+L SL + PG A++GP+G+GKS+ L+ L Y+ G + GK + +
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKST-LSATLAGREDYEVTGGTVEFKGKDLLALSPED 93
Query: 959 RLRSQIGLVQQEPL--------LFSCSIRNNI--CYGNEAASEAEIV-EVSKKANI---- 1003
R I + Q P+ F + N + G E + + +K +
Sbjct: 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153
Query: 1004 HDFIS-SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062
D ++ S+ G+ SGG+K+R I + + P + +LDE+ S LD ++ +V
Sbjct: 154 EDLLTRSVNVGF-----------SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKV 202
Query: 1063 IVSALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMG 1114
+ + +L S I V H R+ I D + V+ +G +V+ G
Sbjct: 203 VADGVNSLRDGKRSF---------IIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 61/239 (25%)
Query: 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLD- 327
+ ILKG +L +P G++ AL+G +G GKST+ ++A Y G+IL+D NI +L
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 328 -----------------------LKSLRKNIGAVSQEP---SLFTGSLMDNIKVGNMDAD 361
LR + A + F + +++ + D
Sbjct: 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES 134
Query: 362 DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQ--LSGGQKQRIAIARAIVKNPPILLL 419
R + SGG+K+R I + +V P +L
Sbjct: 135 ---------------------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVL 167
Query: 420 DEATSALDSESEKLVQEALERAM-QGRTVILIAH--RMSTIVNADMIAVVEDGQVTETG 475
DE S LD ++ K+V + ++I H R+ + D + V+ DG+V TG
Sbjct: 168 DETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 41/231 (17%)
Query: 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNL-RR 959
+L +L + G AL+GP+GAGKS++ +L Y G IL+DG+ I E + R
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 960 LRSQIGLVQQEPL--------LFSCSIRNNICYGNEAASEAEIV-EVSKKANI----HDF 1006
R + L Q P+ F AE +V K + +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAK--LGREVGVAEFWTKVKKALELLDWDESY 135
Query: 1007 IS-SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
+S L +G+ SGG+K+R I + L+ P +LDE S LD ++ +V+
Sbjct: 136 LSRYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184
Query: 1066 ALEALNPKSSSCGELASRTTQITVAH--RLATVINSDVIVVMDKGEVVEMG 1114
+ A+ + + + H R+ I D + VM G VV G
Sbjct: 185 GVNAMRGPNFGA---------LVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 395 QLSGGQKQRIAIARAI-------VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTV 447
LSGG++ +A++ + ++LDE T LD + E + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 448 ILIAHRMSTIVNADMIAVVE 467
I+I H AD+I V+
Sbjct: 340 IIITHHRELEDVADVIINVK 359
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 1024 QLSGGQKQRI------AIARTLLKRPA-IMLLDEATSALDAESERVIVSALEALNPKSSS 1076
LSGG++ + AIA L+ ++LDE T LD + +
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----- 334
Query: 1077 CGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109
S I + H +DVI+ + K
Sbjct: 335 -----SIPQMIIITHHRELEDVADVIINVKKDG 362
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 396 LSGGQK------QRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AMQGRTVI 448
LSGG++ +++A +DE S+LD+E+++ + L+ + ++
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 449 LIAH 452
I H
Sbjct: 340 FITH 343
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1139 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.86 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.82 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.78 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.76 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.76 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.76 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.76 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.74 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.73 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.73 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.71 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.7 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.69 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.68 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.68 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.67 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.67 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.67 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.67 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.66 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.64 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.64 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.64 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.64 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.63 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.61 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.6 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.59 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.58 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.58 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.57 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.55 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.55 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.53 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.52 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.51 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.51 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.49 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.48 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.47 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.46 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.46 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.45 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.45 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.44 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.44 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.43 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.43 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.39 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.36 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.35 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.35 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.35 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.32 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.32 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.29 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.29 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.28 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.27 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.25 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.24 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.24 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.23 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.22 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.21 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.21 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.21 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.2 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.16 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.15 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.13 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.11 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.08 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.06 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.05 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.02 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.01 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.98 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.97 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.96 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.95 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.93 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.92 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.92 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.89 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.89 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.88 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.88 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.83 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.83 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.82 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.81 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.8 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.79 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.78 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.77 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.76 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.76 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.75 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.75 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.74 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.74 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.73 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.73 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.72 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.71 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.71 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.7 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.7 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.7 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.68 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.68 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.66 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.65 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.64 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.63 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.63 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.61 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.6 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.59 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.58 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.55 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.54 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.52 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.5 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.46 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.44 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.44 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.38 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.36 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.35 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.3 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.26 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.23 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.23 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.22 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.22 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.21 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.21 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.2 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.2 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.19 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.18 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.18 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.17 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.15 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.13 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.13 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.13 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.12 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.12 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.12 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.12 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.1 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.07 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.04 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.04 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.02 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.01 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.98 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.94 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.91 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.86 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.85 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.85 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.84 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.81 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.8 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.69 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.69 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.68 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.67 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.66 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.66 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.62 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.57 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.56 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.54 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.54 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.48 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.47 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.45 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.44 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.42 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.41 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.41 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.38 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.36 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.33 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.32 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.31 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.28 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.26 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.25 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.25 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.25 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.22 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.2 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.2 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.19 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.19 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.18 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.18 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.17 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.16 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.16 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.13 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.12 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.1 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.1 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.09 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.06 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.05 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.03 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.03 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.0 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.98 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.97 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.97 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.96 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.96 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.93 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.92 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.92 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.88 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.87 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.86 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.85 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.85 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.83 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.82 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.81 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.78 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.78 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.77 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.75 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.74 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.67 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.61 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.61 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.61 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.57 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.56 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.55 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.48 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.48 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.48 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.47 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.45 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.44 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.43 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.39 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.37 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.36 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.36 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.36 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.36 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.32 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.25 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.19 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.17 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.14 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.13 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.12 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.12 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.1 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.09 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.08 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.07 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.06 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.05 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.05 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.04 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.03 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.03 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.01 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.99 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.97 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.95 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.95 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.92 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.88 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.86 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.85 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.79 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.75 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.73 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.65 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.65 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.62 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.59 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.59 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.53 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.51 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.5 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.49 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.49 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.49 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.48 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.47 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.44 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.44 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.43 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.37 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.34 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.33 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.31 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.31 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-186 Score=1827.18 Aligned_cols=1121 Identities=35% Similarity=0.593 Sum_probs=968.8
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 4 VKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV 74 (1139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (1139)
..+.+||.++|+|+..+ +++|++|||++ ++|++++|+++|++.+++++...+..++..++++++++++++
T Consensus 154 ~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~ 232 (1321)
T 4f4c_A 154 QITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAF 232 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999887 88999999997 899999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 048639 75 ICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 75 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 154 (1139)
+++|.+++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 233 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 312 (1321)
T 4f4c_A 233 THSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAG 312 (1321)
T ss_dssp HHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQV 234 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 234 (1139)
.+.....++..++..++.++.+++++|+|++++.+|.+++|.+++++.++.....|+..+++.+..++++.++++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 392 (1321)
T 4f4c_A 313 VLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEV 392 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999898999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCccCC-CCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 235 IQRKPRISYSS-KGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 235 l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
++.+|+..... ....+.+.++.|+|+||+|+||+++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 393 l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 393 LDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp TTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred HcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc
Confidence 98876653221 22233345678999999999997777899999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC
Q 048639 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393 (1139)
Q Consensus 314 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g 393 (1139)
|+|.+||+|+++++.+++|++||||+|+||||++||+|||+||+|+++++++++||+.++++++++.||+||+|.+||+|
T Consensus 473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred CcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
.+||||||||||||||+|+||+||||||||||||+++++.++++|.++.+|+|+|+||||+++++.||+|+||++|+|++
T Consensus 553 ~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhccchHHHHHHhhccCCCCCC---------cCccccc-ccccc-cchhhhhhhcccC--------chhhh--h
Q 048639 474 TGTHHSLLQTSDFYNRLFTMQNLRPIDD---------SRTKAST-VESTS-TEQQISVVEQLEE--------PEESK--R 532 (1139)
Q Consensus 474 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~-~~~~~~~~~~~~~--------~~~~~--~ 532 (1139)
+|+|+||+++++.|++++..|...+..+ +...... .+.+. ............. ....+ .
T Consensus 633 ~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1321)
T 4f4c_A 633 VGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVID 712 (1321)
T ss_dssp EECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred cCCHHHHHHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchh
Confidence 9999999999999999997664211100 0000000 00000 0000000000000 00000 0
Q ss_pred hccccc---------chhhhcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc--hhhh
Q 048639 533 ELSAST---------GQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP--QAKQ 601 (1139)
Q Consensus 533 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 601 (1139)
+.+... .+.+..+......+++ .++.++.++.++++++++.+.+...|.+.+++..++..+..+ ....
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1321)
T 4f4c_A 713 EKEERIGKDALSRLKQELEENNAQKTNLFEI-LYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLS 791 (1321)
T ss_dssp ---CCCCCCHHHHHHHTTTTSCCCCCCHHHH-HHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTT
T ss_pred HHHhhccchhHHHHHHHHHHcCCcceeHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Confidence 000000 0000111122233334 344567777888888888888899999999888888776642 2234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHH
Q 048639 602 EVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681 (1139)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~ 681 (1139)
...+|+++|++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||.+++|+|+++||+++|++.++..++
T Consensus 792 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~ 871 (1321)
T 4f4c_A 792 QGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAID 871 (1321)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhh
Q 048639 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASF 761 (1139)
Q Consensus 682 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 761 (1139)
..+..++..++.++++++++++.+|.+++++++++|+++++.+++.+.......+..+...+...++.|+++|+++||+|
T Consensus 872 ~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 951 (1321)
T 4f4c_A 872 FRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQAL 951 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999999999999999999999999999998888888777766666666677778888999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHHH
Q 048639 762 CHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDG--IRAYQIFSLTVPSI 839 (1139)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 839 (1139)
++++.+.++|.+..+...+...+.....+...++...+..+..++++|+|+.++..+..+.+.+ +.++..+.....++
T Consensus 952 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l 1031 (1321)
T 4f4c_A 952 AREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTL 1031 (1321)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888888888888888999999999998887665443 33333444444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEE
Q 048639 840 TELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919 (1139)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaI 919 (1139)
..+...++.+..+..+++|++++++.+++.+.... ..+.++..|.|+|+||+|+||++++.|||+||||+|+|||+|||
T Consensus 1032 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1032 GFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp TGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 77778889999999999999999998776543322 22334567899999999999988778899999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC--CcCCHHHHHHH
Q 048639 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN--EAASEAEIVEV 997 (1139)
Q Consensus 920 vG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~--~~~sd~ei~~a 997 (1139)
|||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.+|. ++++|+|+|+|
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHH
T ss_pred ECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999883 47899999999
Q ss_pred HHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCc
Q 048639 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSC 1077 (1139)
Q Consensus 998 l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~ 1077 (1139)
|+++++++||.++|+||||+|||+|.+|||||||||||||||+|+|||||||||||+||++||+.||++|++.+
T Consensus 1191 l~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~------ 1264 (1321)
T 4f4c_A 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR------ 1264 (1321)
T ss_dssp HHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS------
T ss_pred HHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhcC
Q 048639 1078 GELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSG 1138 (1139)
Q Consensus 1078 ~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~~ 1138 (1139)
+++| +|+||||++|+++||||+|||+|+|+|+|+|+||+++ +|.|++||+.|..++
T Consensus 1265 ---~~~T-vI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1265 ---EGRT-CIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp ---SSSE-EEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C--------------
T ss_pred ---CCCE-EEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHhcc
Confidence 5555 9999999999999999999999999999999999987 899999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-163 Score=1607.79 Aligned_cols=1121 Identities=36% Similarity=0.629 Sum_probs=971.7
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 4 VKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV 74 (1139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (1139)
....++|...++++..+ +++|++|||++ ++|++++|+++|++.+++.+...+..++..++++++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888877 88999999997 899999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 048639 75 ICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 75 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 154 (1139)
+++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQV 234 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 234 (1139)
.+.....++..++..++.++.+++++|+|++++..|.+++|.++++++++.....|+..+.+.+..++.+..+++|++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888888999999999999999999999999888888888889999999999999999999999999
Q ss_pred hccCCCCcc-CCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 235 IQRKPRISY-SSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 235 l~~~~~~~~-~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
++.+|+... ...+..+.+..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 987665422 1112222334578999999999986555679999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC
Q 048639 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393 (1139)
Q Consensus 314 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g 393 (1139)
|+|.+||+|+++++++++|++||||||+|+||++||+|||.+|.++.++++++++++.+++++++.++|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
.+|||||||||+|||||+++|+|||||||||+||+++++.+++.++...+|+|+|+||||++++..||+|++|++|+|++
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccc---h---hhhh-hhcccCchh--hhh--hcccccchhh
Q 048639 474 TGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTE---Q---QISV-VEQLEEPEE--SKR--ELSASTGQEE 542 (1139)
Q Consensus 474 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~--~~~--~~~~~~~~~~ 542 (1139)
+|+|+|+++.++.|.+++..+..................... . .... ......... ... .......+..
T Consensus 605 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1284)
T 3g5u_A 605 QGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEAL 684 (1284)
T ss_dssp EECHHHHHHTTSHHHHHHHHTC---------------------------------------------------------C
T ss_pred ECCHHHHHhCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999999999998765432211100000000000000 0 0000 000000000 000 0000000000
Q ss_pred hcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc----hhhhhHHHHHHHHHHHHHHHH
Q 048639 543 VKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP----QAKQEVGWYSLAFSLVGLFSL 618 (1139)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 618 (1139)
........++++ +.+.++.++.++++++++.+.+...|.+.+++..++..+... .......+|.+++++++++..
T Consensus 685 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 763 (1284)
T 3g5u_A 685 DEDVPPASFWRI-LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763 (1284)
T ss_dssp CCCCSCCCTTHH-HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 111122234444 334455555666777777777888888888888777665432 123345567888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 619 FTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIAT 698 (1139)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~ 698 (1139)
++.+++.+++.+.+.++..++|.++|++++++|++|||.+.+++|++++|+++|++.++..++..+..++..++.+++++
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~ 843 (1284)
T 3g5u_A 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGI 843 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHH
Q 048639 699 IVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKT 778 (1139)
Q Consensus 699 ~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~ 778 (1139)
++++.++|.+++++++++|+++++.+++.++......+.++........+.|++.|+++||+|+.++.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888887776777777777788899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 779 KRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAP 858 (1139)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 858 (1139)
.+...+...+.+...++...+.++..++++|+|++++..+.++++.++.++.++.....++..+....+.+..+..+.+|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999888888888888888888888888899999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 859 AFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 859 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+.++++.+++.+.......+++...|.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 99999887665432222223334568899999999998665567999999999999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCC--cCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
+|++|+|.+||+|+++++++.+|++++||||||.+|++||+|||.++.+ ..++++++++++++++++++.++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999865 46899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
++||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++.. .++| +|+||||++++
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---------~~~t-vi~isH~l~~i 1233 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---------EGRT-CIVIAHRLSTI 1233 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---------SSSC-EEEECSCTTGG
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---------CCCE-EEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999765 4444 99999999999
Q ss_pred hcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1097 INSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1097 ~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
.+||||+||++|+|+|+|+|+||+++ +|.|++|++.|..+
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 99999999999999999999999987 89999999988655
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-91 Score=923.44 Aligned_cols=577 Identities=33% Similarity=0.536 Sum_probs=527.3
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---------------------chhhhhHH
Q 048639 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD---------------------PQAKQEVG 604 (1139)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 604 (1139)
.+++.++++|.+..+..++.++++++++++.++..|++.++++++.+.+.+ ........
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 345677788655556667788889999999999999988888776654321 01122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHH
Q 048639 605 WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRM 684 (1139)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l 684 (1139)
.+++.++++++..+++.+++.+++.+.+++...++|.++|++++++|++||| ++++|++++|+++|++.+++.+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd--~~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--HTCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999999999999999999999999999 68899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcch
Q 048639 685 SVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE 764 (1139)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~ 764 (1139)
..++..++.++++++++++++|.+++++++++|+++++..+..+..++..++.++...+..+.+.|+++|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999988888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 765 ENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWT 844 (1139)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1139)
+.+.++|.+..++..+...+.....+...++...+..+..++++|+|++++..|.++++.+++++.++.....++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 048639 845 LIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924 (1139)
Q Consensus 845 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sG 924 (1139)
.+..+..+..+++|+.++++.+++.+........+.+.+|.|+|+||+|+||++++.|+|+|+||+|+|||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999999877665443333344456789999999999998878899999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCch
Q 048639 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 925 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||.||+|||||||.+|+|+++++++++||+.++++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe
Q 048639 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084 (1139)
Q Consensus 1005 ~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t 1084 (1139)
++|++||+|+||.|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++.. +++|
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~---------~~~T 605 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA---------KGRT 605 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH---------TTSE
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh---------CCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 4555
Q ss_pred EEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1085 TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+|+||||++++.+||+|+||++|+|+|+|+|+||+++ +|.|++|++.|.
T Consensus 606 -~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 606 -TIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp -EEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred -EEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999999999999987 899999998775
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-84 Score=792.16 Aligned_cols=567 Identities=24% Similarity=0.360 Sum_probs=501.9
Q ss_pred HhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 556 FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKA 635 (1139)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1139)
+.+.++.++.+++++++..+..++....++++..+++.............+..+++++.++..++.++..++..+.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (587)
T 3qf4_A 15 ARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNF 94 (587)
T ss_dssp GGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777777777778888877776543322233344556666677778888888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048639 636 MTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAV 715 (1139)
Q Consensus 636 ~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 715 (1139)
..++|.++|++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++++++
T Consensus 95 ~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 95 GADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 716 MPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGF 795 (1139)
Q Consensus 716 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1139)
+|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+.....+....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888887777778888888899999999999999999999999999999999998888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 048639 796 SLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE 875 (1139)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 875 (1139)
...+..+..++++|+|++++..|.++++.++++..++.....++..+...+..+..+..+.+|+.++++.+++.+....
T Consensus 253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~- 331 (587)
T 3qf4_A 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN- 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-
Confidence 7777788888899999999999999999999999999888899999999999999999999999999987665432211
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 876 SSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 876 ~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++++
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 11122346789999999999743 45799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++.++|+|+||.++++|.+||||||||+||
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecC
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1115 (1139)
||||+++|+|||||||||+||+++++.|++.|++.. ++ +|+|+||||++++..||||+||++|+|+|.|+
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---------KG-CTTFIITQKIPTALLADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---------TT-CEEEEEESCHHHHTTSSEEEEEETTEEEEEEC
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---------CC-CEEEEEecChHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999864 34 45999999999999999999999999999999
Q ss_pred hhHHhhccCChHHHHHHHHhhc
Q 048639 1116 HSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1116 ~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
|+||+++ ++.|+++++.|.+.
T Consensus 561 ~~el~~~-~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 561 HKELLEH-CKPYREIYESQFGN 581 (587)
T ss_dssp HHHHHHH-CHHHHHHHHHHC--
T ss_pred HHHHHhC-CcHHHHHHHHHhcc
Confidence 9999986 79999999988654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-83 Score=791.30 Aligned_cols=569 Identities=28% Similarity=0.451 Sum_probs=506.4
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
++++ +.+.++.++.+++++++.++.++.....++++..+++.............++++++++.++..++.+++.++...
T Consensus 25 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (598)
T 3qf4_B 25 LRRL-LGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLT 103 (598)
T ss_dssp HHHH-GGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 344556666666677777777777777778787777765543323334456677777788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++
T Consensus 104 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 181 (598)
T 3qf4_B 104 LSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
++++++|+++++..+..+..++..++.++...+..+.+.|+++|+++||+|++++.+.++|.+..++..+...+.....+
T Consensus 182 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 182 VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888877788888888899999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE 870 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 870 (1139)
....+...+..+..++++|+|++++..|.++++.+++++.+......++..+...+..+..+..+++|+.++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 77777777788888889999999999999999999888888888888999999999999999999999999998766543
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 871 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
.. ...+.++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+
T Consensus 342 ~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 342 DP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 21 11222335678999999999963 357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 951 GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 951 di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|+++++.+.+|+++++|||||.+|++||+|||.++.+..++++++++++.++++++++++|+|+||.+|++|.+||||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
||+||||||+++|+|||||||||+||+++++.|++.|++.. +++ |+|+||||++++..||||+||++|+|
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~itH~l~~~~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM---------EGK-TSIIIAHRLNTIKNADLIIVLRDGEI 567 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---------TTS-EEEEESCCTTHHHHCSEEEEECSSSE
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---------CCC-EEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999764 344 59999999999999999999999999
Q ss_pred EEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1111 VEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
+|.|+|+||+++ +|.|+++++.|.+.
T Consensus 568 ~~~g~~~~l~~~-~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 568 VEMGKHDELIQK-RGFYYELFTSQYGL 593 (598)
T ss_dssp EECSCHHHHHHT-TCHHHHHHHHHHGG
T ss_pred EEECCHHHHHhC-CCHHHHHHHHHhhh
Confidence 999999999986 89999999887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-84 Score=852.05 Aligned_cols=574 Identities=34% Similarity=0.559 Sum_probs=515.1
Q ss_pred chhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCch--------------------hhhhHHHHHH
Q 048639 549 TIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQ--------------------AKQEVGWYSL 608 (1139)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 608 (1139)
..+++++.+..+..+..++++++++++.++..|++.++++..++.+.... .......|.+
T Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1284)
T 3g5u_A 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAY 112 (1284)
T ss_dssp CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHH
Confidence 44556644444556777788888888888889988888877665443110 1123345778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHH
Q 048639 609 AFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIV 688 (1139)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~ 688 (1139)
+|++++++..++.+++.+++.+.+.+...++|.++|++++++|++||| ++++|++++|+++|++.+++.++..+..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~ 190 (1284)
T 3g5u_A 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFF 190 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999 688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHH
Q 048639 689 QCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENIL 768 (1139)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~ 768 (1139)
..++.++++++++++.+|.+++++++++|+++++..++.+..++..++.++..++..+++.|+++|+++||+|++|+.+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~ 270 (1284)
T 3g5u_A 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999998888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 769 QKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPT 848 (1139)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1139)
++|.+..++..+...+.....+...++...+..+..++++|+|++++..|.+++|.+++++.++.....++..+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1284)
T 3g5u_A 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA 350 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777888888888888888999999999999999999999888887777778889999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHH
Q 048639 849 VISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKS 928 (1139)
Q Consensus 849 ~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 928 (1139)
+..+..+++|++++++.+++.++.......++...|.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKS 430 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999987766543222222233457899999999999876556899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHh
Q 048639 929 SVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS 1008 (1139)
Q Consensus 929 TL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~ 1008 (1139)
||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.||++||+|||.++.+..++++++++++.+++++++.
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE
Q 048639 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT 1088 (1139)
Q Consensus 1009 ~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~ 1088 (1139)
++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.+++.. +++ |+|+
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~ 580 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR---------EGR-TTIV 580 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH---------TTS-EEEE
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc---------CCC-EEEE
Confidence 999999999999999999999999999999999999999999999999999999999998764 444 5999
Q ss_pred EecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1089 VAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1089 IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
||||++++.+||||+||++|+|+|.|+|+||+++ +|.|++++..|.
T Consensus 581 itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 581 IAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp ECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred EecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 9999999999999999999999999999999986 899999997664
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-82 Score=779.90 Aligned_cols=564 Identities=30% Similarity=0.445 Sum_probs=497.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh---hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 557 CLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEV----GWYSLAFSLVGLFSLFTHTLQHYFFG 629 (1139)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1139)
.+.++.++.+++++++.++..+..+..++++...++....... .... ..+..+++++.++..++.+++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 4a82_A 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666677777777665543211 1112 23444555566677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048639 630 VVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMA 709 (1139)
Q Consensus 630 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 709 (1139)
+.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 688999999999999999999988888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 710 LVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789 (1139)
Q Consensus 710 lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1139)
+++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+...+.
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888887788888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 048639 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEI 869 (1139)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 869 (1139)
+....+...+..+..++++|+|++++..|.++++.++++..++.....++..+...+..+..+..+++|+.++++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999998899999999999999999999999999999876654
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 870 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
+.... ..+.+...|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 325 KNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred cCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 32211 11222346789999999999753 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 950 ~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.++++++++++|+|+||.+|++|.+|||||
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCE
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ 1109 (1139)
|||+||||||+++|+|||||||||+||+++++.+++.+++.. +++ |+|+||||++++..||||+||++|+
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~itH~l~~~~~~d~i~~l~~G~ 552 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS---------KDR-TTLIVAHRLSTITHADKIVVIENGH 552 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---------TTS-EEEEECSSGGGTTTCSEEEEEETTE
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---------CCC-EEEEEecCHHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999998765 344 5999999999999999999999999
Q ss_pred EEEecChhHHhhccCChHHHHHHHHh
Q 048639 1110 VVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
|+|.|+|+||+++ +|.|+++++.|.
T Consensus 553 i~~~g~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 553 IVETGTHRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp EEEEECHHHHHHT-TSHHHHHHTTTT
T ss_pred EEEECCHHHHHhC-CcHHHHHHHhhc
Confidence 9999999999986 799999998763
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-81 Score=767.03 Aligned_cols=561 Identities=27% Similarity=0.409 Sum_probs=493.0
Q ss_pred hchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
+.++.++.+++++++.++.++..+..++++..+++............++..+++++.++..++.++..++....+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b5x_A 19 YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVM 98 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666665543211111122233345666777888888899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++++|
T Consensus 99 ~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 99 QMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+++++..+..+..++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777777777788888888999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESS 877 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 877 (1139)
.+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.+++.++. ..
T Consensus 257 ~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~ 333 (582)
T 3b5x_A 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG---KY 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC---CC
Confidence 888888888999999999999999999999999999999999999999999999999999999999876543211 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 878 ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 878 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 334 EAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH
Confidence 112235789999999999742 2569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+.+|++++||||+|.+|++|++|||.++. ++.++++++++++.++++++++++|+||||.+|++|.+||||||||+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999986 66789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+|||||||||+||+++++.|++.|++.. + ++|+|+||||++++..||||+||++|+++|.|+|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQ---------K-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---------C-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999764 3 3459999999999999999999999999999999
Q ss_pred hHHhhccCChHHHHHHHHh
Q 048639 1117 STLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHhC-CcHHHHHHHHhh
Confidence 999986 799999999875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-81 Score=767.21 Aligned_cols=561 Identities=30% Similarity=0.445 Sum_probs=492.6
Q ss_pred hchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
+.++.++.+++++++.++..+.....++++..+++............++..+++++.++..++.+++.++....+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 98 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666665443221111122223345666777788888899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++++|
T Consensus 99 ~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b60_A 99 TMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAP 176 (582)
T ss_dssp HHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+++++..+..+..++..++.++...+..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b60_A 177 IVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887888777778888888888999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESS 877 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 877 (1139)
.+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.+++.+.. ..
T Consensus 257 ~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~ 333 (582)
T 3b60_A 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG---KR 333 (582)
T ss_dssp HHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC---CB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CC
Confidence 888888888999999999999999999999999999999999999999999999999999999999876553211 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 878 ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 878 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 334 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 112235789999999999732 2479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+.+|++++||||+|.+|++|++|||.++. +..++++++++++.++++++++++|+||||.+|++|.+||||||||+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999986 66789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+|||||||||+||+++++.|++.|++.. ++ +|+|+||||++++..||||+||++|+++|.|+|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQ---------KN-RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---------TT-SEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---------CC-CEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999764 33 459999999999999999999999999999999
Q ss_pred hHHhhccCChHHHHHHHHh
Q 048639 1117 STLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHc-CCHHHHHHHHhc
Confidence 999986 799999999874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-79 Score=746.03 Aligned_cols=486 Identities=27% Similarity=0.443 Sum_probs=446.4
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|..||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 163 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINV 163 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 88899999997 8999999999999999999999888899898899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (587)
T 3qf4_A 164 KLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAF 243 (587)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
...+...++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 323 (587)
T 3qf4_A 244 SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK 323 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888887888888888899999999999999999999999999889999999999999999999999999999876
Q ss_pred CCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++..........++.++.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 324 PAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp CSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred CccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 6542221111222345689999999999753 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 319 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
||+|+.+++.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
|||||++|||||+++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|+|+++|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHhhcc
Q 048639 479 SLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 479 ~l~~~~~~~~~~~~~~~ 495 (1139)
|++++++.|++++..+.
T Consensus 563 el~~~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 563 ELLEHCKPYREIYESQF 579 (587)
T ss_dssp HHHHHCHHHHHHHHHHC
T ss_pred HHHhCCcHHHHHHHHHh
Confidence 99999999999987653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-79 Score=747.12 Aligned_cols=485 Identities=34% Similarity=0.495 Sum_probs=446.8
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|.+||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444 88999999997 8999999999999999999988888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
++.+...++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888888888888888888999999999999999999999999998889999999999999999999999999999876
Q ss_pred CCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++..........+...+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 6542221112222345689999999999753 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 319 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
||+|+++.+.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
|||||++|||||+++|+|+|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|+++++|+|+
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHhhc
Q 048639 479 SLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 479 ~l~~~~~~~~~~~~~~ 494 (1139)
|+++.++.|++++..|
T Consensus 561 el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 561 ELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp HHHHTTSHHHHHHTTT
T ss_pred HHHhCCcHHHHHHHhh
Confidence 9999999999998755
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-78 Score=740.26 Aligned_cols=471 Identities=32% Similarity=0.506 Sum_probs=439.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++|+++++..++.+
T Consensus 121 l~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~ 199 (598)
T 3qf4_B 121 QRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199 (598)
T ss_dssp HHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...++..++..+..++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (598)
T 3qf4_B 200 QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALIS 279 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+++|+.++++.+++.... ......+..+.|+++
T Consensus 280 ~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~ 358 (598)
T 3qf4_B 280 GFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEFK 358 (598)
T ss_dssp HHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEEE
Confidence 9999999999999999999988888888899999999999999999999999999876543211 111223345689999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|+||||
T Consensus 359 ~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q 436 (598)
T 3qf4_B 359 NVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436 (598)
T ss_dssp EEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECT
T ss_pred EEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeC
Confidence 99999974 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++|||||+++|+|||||
T Consensus 437 ~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD 516 (598)
T 3qf4_B 437 DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516 (598)
T ss_dssp TCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+|++++++.|++++..+.
T Consensus 517 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 517 EATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591 (598)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999998889999999999999989999999999999999999999999999999987553
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-76 Score=724.63 Aligned_cols=470 Identities=31% Similarity=0.478 Sum_probs=437.5
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++|+++++..++.+
T Consensus 109 l~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b5x_A 109 MHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187 (582)
T ss_pred HcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 89999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+......++..++..+..++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T 3b5x_A 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+++.... ..+.+...+.|+++
T Consensus 268 ~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 268 FLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVK 345 (582)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999876543211 11112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+.+++|++|+||||
T Consensus 346 ~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 346 DVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred EEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 999999743 2569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++|++|||.+|. ++.+++++.++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|+||||
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illl 504 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504 (582)
T ss_pred CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999987 66778899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|++++..|
T Consensus 505 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 505 DEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHh
Confidence 999999999999999999999878999999999999998999999999999999999999999899999998765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-76 Score=724.31 Aligned_cols=470 Identities=33% Similarity=0.515 Sum_probs=437.2
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++++|+++++..++.+
T Consensus 109 ~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b60_A 109 MGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187 (582)
T ss_dssp HTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 89999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+......++..++..+..++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (582)
T 3b60_A 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.... ..+.++..+.|+++
T Consensus 268 ~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~ 345 (582)
T 3b60_A 268 YAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFR 345 (582)
T ss_dssp HHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999876543211 11112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+.+++|++|+||||
T Consensus 346 ~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 346 NVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp EEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred EEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 999999742 2569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++|++|||.++. ++.+++++.++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|+|+||
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illl 504 (582)
T 3b60_A 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_dssp SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999987 66788999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|++++..|
T Consensus 505 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp ETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999999878999999999999998999999999999999999999999888999998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-66 Score=632.06 Aligned_cols=450 Identities=23% Similarity=0.301 Sum_probs=328.6
Q ss_pred cEEE--------EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE---------EE
Q 048639 256 NIDI--------RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI---------LI 318 (1139)
Q Consensus 256 ~i~~--------~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i---------~~ 318 (1139)
.|++ +|++++|++. ..+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999642 25899999 999999999999999999999999999999999996 35
Q ss_pred CCccCCCCCHH--HHhcceEEEecCCC----CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcccccc
Q 048639 319 DSLNIKDLDLK--SLRKNIGAVSQEPS----LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392 (1139)
Q Consensus 319 ~g~~~~~~~~~--~~~~~i~~v~Q~~~----l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~ 392 (1139)
+|.++...... ..+..+++++|... ++.+|++||+...... + .+.+.++.+ |++......
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~---~---------~~~~~L~~l--gL~~~~~~~ 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV---G---------KFEEVVKEL--ELENVLDRE 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCS---S---------CHHHHHHHT--TCTTGGGSB
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHH---H---------HHHHHHHHc--CCCchhCCC
Confidence 56554321111 12346889998743 3456999998753211 1 122344555 455556777
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++.
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 88999999999999999999999999999999999999999999998874 48999999999999876 99999998542
Q ss_pred EEEecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccch
Q 048639 471 VTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI 550 (1139)
Q Consensus 471 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1139)
. ..|.... + . ..
T Consensus 306 ~-~~g~~~~----------------------------~---~--------------------------~~---------- 317 (607)
T 3bk7_A 306 G-VYGIFSK----------------------------P---K--------------------------GT---------- 317 (607)
T ss_dssp T-TEEEECC----------------------------C---E--------------------------EH----------
T ss_pred c-ccceecc----------------------------c---h--------------------------hH----------
Confidence 1 1110000 0 0 00
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
+.... . ....
T Consensus 318 ---------~~~i~--------~----------------~~~~------------------------------------- 327 (607)
T 3bk7_A 318 ---------RNGIN--------E----------------FLQG------------------------------------- 327 (607)
T ss_dssp ---------HHHHH--------H----------------HHHT-------------------------------------
T ss_pred ---------HHHHH--------H----------------HHhh-------------------------------------
Confidence 00000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
+....+
T Consensus 328 ------------------------~~~~~~-------------------------------------------------- 333 (607)
T 3bk7_A 328 ------------------------YLKDEN-------------------------------------------------- 333 (607)
T ss_dssp ------------------------EETTTT--------------------------------------------------
T ss_pred ------------------------cchhhh--------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
.
T Consensus 334 -----------------------~-------------------------------------------------------- 334 (607)
T 3bk7_A 334 -----------------------V-------------------------------------------------------- 334 (607)
T ss_dssp -----------------------E--------------------------------------------------------
T ss_pred -----------------------h--------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE 870 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 870 (1139)
.....+....
T Consensus 335 ----------------------------------------------------------------------~~~~~~~~~~ 344 (607)
T 3bk7_A 335 ----------------------------------------------------------------------RFRPYEIRFT 344 (607)
T ss_dssp ----------------------------------------------------------------------ECCSSCCCCC
T ss_pred ----------------------------------------------------------------------hccccccccc
Confidence 0000000000
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 871 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
...+... ....-.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+
T Consensus 345 ~~~~~~~--~~~~~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--- 415 (607)
T 3bk7_A 345 KLSERVD--VERETLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--- 415 (607)
T ss_dssp CSTTSCC--CCCCEEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred cCCCccc--ccCceEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence 0000000 001124899999999952 3699999999999999999999999999999999999999999976
Q ss_pred ccCCCChHHHhhhceEEcccccc-ccccHHHHhccC-CCc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 951 GIKEYNLRRLRSQIGLVQQEPLL-FSCSIRNNICYG-NEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 951 di~~~~l~~lR~~i~~V~Qdp~L-F~gTIreNL~~~-~~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+.+++|+||++.+ ++.|+++|+... .+. ...+.+.++++..++.++. +.++ .+|||
T Consensus 416 ----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSG 474 (607)
T 3bk7_A 416 ----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRNV----EDLSG 474 (607)
T ss_dssp ----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSBG----GGCCH
T ss_pred ----------eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCCh----hhCCH
Confidence 2469999999865 578999998653 111 1245567777777775432 3333 47999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|+||||||||++||+.+...+.+.|+++. . ..++|||+|+|+++.+.. ||||++|+
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-------~-~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-------E-KNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999998753 0 123469999999999986 99999999
Q ss_pred C--CEEEEecChhHHhh
Q 048639 1107 K--GEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1107 ~--G~ive~G~~~eLl~ 1121 (1139)
+ |++++.|+|++++.
T Consensus 547 ~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 547 GEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EETTTEEEECCCEEHHH
T ss_pred CCcceEEecCCHHHHHh
Confidence 6 88889999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-65 Score=636.55 Aligned_cols=196 Identities=24% Similarity=0.388 Sum_probs=157.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..+...|++++|++ +++|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999963 469999999999999999999999999999999996 544 4544311 124
Q ss_pred eEEEecCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEP-SLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~-~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|++|++ .++ ..|+.||+.+..... .+++.+ .++.+ |++ ........+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~---------~L~~l--gL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKD---------KLIEF--GFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHH---------HHHHT--TCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHH---------HHHHc--CCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 78999986 444 459999998621111 333333 33443 332 2345566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEE-EecChhhhh
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVT-ETGTHHSLL 481 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 481 (1139)
.+|+||||||||++||+.+...+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999988 68999999999999976 9999999999997 578887764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-66 Score=625.21 Aligned_cols=201 Identities=26% Similarity=0.338 Sum_probs=166.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999942 3689999999999999999999999999999999999999999986 2369
Q ss_pred eEEcccccc-ccccHHHHhccC-CCc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 965 GLVQQEPLL-FSCSIRNNICYG-NEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~-~~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+||||++.. +..|+.+|+... .+. ...+.+.++++..++.+.. + ....+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-------D----REVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-------T----SBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-------c----CChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 577999998643 111 1234566666666665432 2 2335799999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChhH
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHST 1118 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~e 1118 (1139)
+|++|||||||++||..+...|.+.|+++. . ..++|||+|||+++.+.. ||||++|++ |++++.|+|++
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~-------~-~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLM-------E-KNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999999999999999999998753 0 123459999999999986 999999996 78889999998
Q ss_pred Hhh
Q 048639 1119 LVA 1121 (1139)
Q Consensus 1119 Ll~ 1121 (1139)
++.
T Consensus 491 ~~~ 493 (538)
T 1yqt_A 491 MRE 493 (538)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-65 Score=636.85 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=136.1
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHH---------------------HHHHhccCCC-------ccEEEECCccC
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVI---------------------SLVARFYDPS-------NGDILIDSLNI 323 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll---------------------~~l~g~~~~~-------~G~i~~~g~~~ 323 (1139)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4599999999999999999999999999998 8999999998 45556666554
Q ss_pred CCCCHHHHhcceEEEecCCCCC--------------------cccHHHHHhcCCC-CCC--HHHHHHH-HH-HhcHHHHH
Q 048639 324 KDLDLKSLRKNIGAVSQEPSLF--------------------TGSLMDNIKVGNM-DAD--DEQIYNA-SM-MANAHSFI 378 (1139)
Q Consensus 324 ~~~~~~~~~~~i~~v~Q~~~l~--------------------~~ti~~ni~~g~~-~~~--~~~~~~~-~~-~~~~~~~i 378 (1139)
.. ..+..+++|+|.+.++ ..|++||+.+... ... ..+..+. .. .....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 2244566666654332 3489999987421 100 1111110 00 00111234
Q ss_pred HhCCCCCCcc-ccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCc
Q 048639 379 SQLPDQYSTE-LGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRM 454 (1139)
Q Consensus 379 ~~l~~g~~t~-i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~ 454 (1139)
+.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+|||++
T Consensus 187 ~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 187 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 544 34332 466788999999999999999999998 999999999999999999999998874 589999999999
Q ss_pred cchhccCEEEEE------eCcEEEEecChhhhh
Q 048639 455 STIVNADMIAVV------EDGQVTETGTHHSLL 481 (1139)
Q Consensus 455 ~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 481 (1139)
+.+..||+|++| ++|++++.|+++++.
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 988789999999 899999999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-64 Score=602.21 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.++++|++++|.+ ..|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999952 3688889999999999999999999999999999999999999998763 48
Q ss_pred eEEcccccc-ccccHHHHhccCCCc---CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 GLVQQEPLL-FSCSIRNNICYGNEA---ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~~~~---~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+++||++.. |..|+++|+...... ...+.+.++++..++.++.+ ....+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----------SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-----------SBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999864 578999999753221 22345666777777765432 233579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~ 1117 (1139)
++|+||||||||++||+.+...|.+.|+++.. ..++|||+|||+++.+.. ||||+||++ |.+...++|.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~--------~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTR--------ERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--------HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999987640 234569999999999987 999999986 5667778887
Q ss_pred HHhh
Q 048639 1118 TLVA 1121 (1139)
Q Consensus 1118 eLl~ 1121 (1139)
++..
T Consensus 474 ~~~~ 477 (538)
T 3ozx_A 474 TLKT 477 (538)
T ss_dssp EHHH
T ss_pred HHHH
Confidence 6643
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-63 Score=555.21 Aligned_cols=279 Identities=46% Similarity=0.742 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 048639 845 LIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924 (1139)
Q Consensus 845 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sG 924 (1139)
.++.+..++.+++|++++++.+++...... ..+.+...|.|+|+||+|+|++ ..++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 345566677888999999887655432211 1111224578999999999963 3479999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCch
Q 048639 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 925 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
||||||+++|+|+|+|++|+|.+||.|++.++.+.+|++|+||||+|.+|++||+|||.++.+..++++++++++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998778899999999999999
Q ss_pred HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe
Q 048639 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084 (1139)
Q Consensus 1005 ~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t 1084 (1139)
+++..+|+||+|.+++.|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++.. .++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~---------~~~- 240 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC---------ANR- 240 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH---------TTS-
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---------CCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 444
Q ss_pred EEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1085 TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
|+|+||||++++..||||+||++|+|+|.|+|++|+++ ++.|++|++.|...
T Consensus 241 Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 241 TTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQ 292 (306)
T ss_dssp EEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHCC
T ss_pred EEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHhh
Confidence 59999999999999999999999999999999999986 89999999888654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=595.82 Aligned_cols=200 Identities=25% Similarity=0.366 Sum_probs=164.8
Q ss_pred EeEEEECCCCCCcccccceeEEEeCC-----cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPG-----LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~G-----e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
++++|+|++. ..+++++||++++| |++||+||||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678889642 35899999999999 8899999999999999999999999999972 22 246
Q ss_pred ceEEccccc-cccccHHHHhccCC--CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 964 IGLVQQEPL-LFSCSIRNNICYGN--EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 964 i~~V~Qdp~-LF~gTIreNL~~~~--~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++++||++. .|++|+++|+.... .....+...++++..++.+.. +.+ ..+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~----~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-------DQE----VQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-------SSB----SSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCC----hhhCCHHHHHHHHHHHHHH
Confidence 999999975 56889999985321 122445667778888775442 223 3579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~ 1117 (1139)
.+|+||||||||++||+.+...+.+.|+++. . ..++|||+|||+++.+.. ||||+||++ |+++..|+|+
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~-------~-~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFI-------L-HNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHH-------H-HHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 9999999999999999999999999998753 0 224469999999999987 999999996 9999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
+++..
T Consensus 556 ~~~~~ 560 (608)
T 3j16_B 556 SLLTG 560 (608)
T ss_dssp EHHHH
T ss_pred HHhhh
Confidence 99865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-61 Score=532.51 Aligned_cols=277 Identities=38% Similarity=0.637 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCC
Q 048639 217 DMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGC 296 (1139)
Q Consensus 217 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGs 296 (1139)
....++++.++++|++++++.+++..............+.|+++||+|+|++ ++++|+||||+|++||++||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4566778888999999999865543221111112223467999999999974 35699999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 048639 297 GKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376 (1139)
Q Consensus 297 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 376 (1139)
|||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|++|++||+|||.+|.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 377 ~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.|+++.+++|+|+||||++.
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 457 IVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 457 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
+..||+|++|++|+|++.|+|+++++..+.|++++..+.
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 988999999999999999999999999999999998765
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-53 Score=462.99 Aligned_cols=240 Identities=47% Similarity=0.752 Sum_probs=223.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
-+|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 3469999999999999999999999999999999999999999999999999999988889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
|+||||+|.+|++|++||+.++.+..++++++++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876556788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+|||||||||+||+.+++.|.+.|++.. . ++|||+|||+++.+..||||++|++|++++.|+++++++++
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~---------~-g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC---------K-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH---------T-TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTST
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc---------C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999763 3 34699999999999889999999999999999999999766
Q ss_pred CChHHHHHHHH
Q 048639 1124 QGVYSRLYQLQ 1134 (1139)
Q Consensus 1124 ~g~f~~l~~~~ 1134 (1139)
.+.|++++..|
T Consensus 235 ~~~~~~l~~~~ 245 (247)
T 2ff7_A 235 ESLYSYLYQLQ 245 (247)
T ss_dssp TCHHHHHHHHH
T ss_pred chHHHHHHHhh
Confidence 78999998765
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=456.98 Aligned_cols=242 Identities=43% Similarity=0.760 Sum_probs=222.8
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|++.+..++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++|++||+.++....+++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999875445678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+|||||||||+||+.+++.+.+.|++.. + ++|+|+|||+++.+..||+|++|++|++++.|+|+++++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~---------~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 243 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR---------K-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL- 243 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT---------T-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc---------C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-
Confidence 9999999999999999999999999864 3 3469999999999988999999999999999999999976
Q ss_pred CChHHHHHHHHhhc
Q 048639 1124 QGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1124 ~g~f~~l~~~~~~~ 1137 (1139)
.+.|.+++..|...
T Consensus 244 ~~~~~~~~~~~~~~ 257 (260)
T 2ghi_A 244 NGEYAEMWNMQSGG 257 (260)
T ss_dssp TSHHHHHHHHHHC-
T ss_pred ChHHHHHHHhhhhh
Confidence 78999999877543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-52 Score=450.66 Aligned_cols=238 Identities=45% Similarity=0.746 Sum_probs=220.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|.+|+.|++||+.++.+....+++.++++..++.+++.++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986555677888888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHHhh
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTM 493 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 493 (1139)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|..++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 999999999999999999999999988778999999999999878999999999999999999999876 6778777654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=457.49 Aligned_cols=244 Identities=41% Similarity=0.705 Sum_probs=220.8
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+.|+++||+++|++.++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999996422246999999999999999999999999999999999999999999999999999888888999
Q ss_pred hceEEccccccccccHHHHhccCCCcCCH-HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASE-AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd-~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+|+||||+|.+|+.|++|||.++.+...+ +++.++++..++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987544444 67888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||+.+.+.|.+.|++... ..++|||+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--------~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPE--------WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTT--------TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHh--------hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999997641 22456999999999998899999999999999999999997
Q ss_pred ccCChHHHHHHHHh
Q 048639 1122 ESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1122 ~~~g~f~~l~~~~~ 1135 (1139)
. .+.|.++++.+.
T Consensus 246 ~-~~~~~~~~~~~~ 258 (271)
T 2ixe_A 246 R-GGCYRSMVEALA 258 (271)
T ss_dssp H-TSHHHHHHHC--
T ss_pred C-cHHHHHHHHHhh
Confidence 6 689999987664
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=511.63 Aligned_cols=215 Identities=22% Similarity=0.364 Sum_probs=160.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHH-Hhcccc-------C---------------
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLAL-LLRFYD-------P--------------- 940 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~l-L~rl~~-------p--------------- 940 (1139)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+++.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 766542 2
Q ss_pred ---Ccc-------EEEECCcccCCCCh----------HHHhhhceEEccc------------------------------
Q 048639 941 ---NEG-------IILIDGKGIKEYNL----------RRLRSQIGLVQQE------------------------------ 970 (1139)
Q Consensus 941 ---~~G-------~I~idG~di~~~~l----------~~lR~~i~~V~Qd------------------------------ 970 (1139)
.+| .|.+||.++...+. +.+|+.++.+|++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998865443 3455444333321
Q ss_pred -cccc-------------------------cccHHHHhcc--------CCCcCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 971 -PLLF-------------------------SCSIRNNICY--------GNEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 971 -p~LF-------------------------~gTIreNL~~--------~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
-.++ .-||.||+.+ .......+++.++++.+++...
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~---------- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL---------- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------
Confidence 0011 1255555543 2111112344555666555321
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKR---PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~---p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
.++.....||||||||++|||||+++ |+||||||||++||+.+.+.|.+.|+++. ..+.|||+|+|++
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---------~~G~tVIvisHdl 793 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV---------DAGNTVIAVEHKM 793 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCH
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCH
Confidence 23455668999999999999999996 69999999999999999999999998764 3345699999999
Q ss_pred hhhhcCCEEEEE------eCCEEEEecChhHHhhccCC
Q 048639 1094 ATVINSDVIVVM------DKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1094 ~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~g 1125 (1139)
+.+..||||++| ++|+|++.|+|+++++.+.+
T Consensus 794 ~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 794 QVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTC
T ss_pred HHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchh
Confidence 999889999999 69999999999999976444
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=454.84 Aligned_cols=237 Identities=38% Similarity=0.707 Sum_probs=219.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccccccccccHHHHhccC-CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 966 LVQQEPLLFSCSIRNNICYG-NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~-~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
||||+|.+|++|++|||.++ .+..++++++++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+.+.+.+.|++.. . ++|+|+|||+++.+..||||++|++|++++.|+|++++++ .
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~---------~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~ 228 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM---------K-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-H 228 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH---------T-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-C
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-c
Confidence 999999999999999999999998764 3 3469999999999888999999999999999999999976 6
Q ss_pred ChHHHHHHHHh
Q 048639 1125 GVYSRLYQLQA 1135 (1139)
Q Consensus 1125 g~f~~l~~~~~ 1135 (1139)
+.|.+++..+.
T Consensus 229 ~~~~~~~~~~~ 239 (243)
T 1mv5_A 229 PLYAKYVSEQL 239 (243)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhhh
Confidence 78888887654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-51 Score=447.38 Aligned_cols=239 Identities=44% Similarity=0.728 Sum_probs=219.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++...+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|.+|+.|++||+.++.+....+++.++++..++.+++..+|+++++.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555667788888888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++...+.|..++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999998877899999999999987899999999999999999999988777788777654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=448.73 Aligned_cols=240 Identities=40% Similarity=0.671 Sum_probs=217.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++..++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974222569999999999999999999999999999999999999999999999999988777788889
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADD-EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||||+|.+|+.||+|||.++.+.... +++.+++...++.++++.+|+|+++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998654333 556667777777889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++....+.|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999998754 899999999999987899999999999999999999988778888887
Q ss_pred hhc
Q 048639 492 TMQ 494 (1139)
Q Consensus 492 ~~~ 494 (1139)
..+
T Consensus 255 ~~~ 257 (271)
T 2ixe_A 255 EAL 257 (271)
T ss_dssp HC-
T ss_pred HHh
Confidence 644
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=506.95 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=164.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHH---------HHHhccccC------Cc------
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL---------ALLLRFYDP------NE------ 942 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~---------~lL~rl~~p------~~------ 942 (1139)
+.+++++++ .+.|+||||+|++||.+||+|+||||||||+ +++.+...+ .+
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 346666653 2379999999999999999999999999997 233333222 22
Q ss_pred cEEEECCcccCCCCh----------HHHh-------------------------------hhceEEccccccc-------
Q 048639 943 GIILIDGKGIKEYNL----------RRLR-------------------------------SQIGLVQQEPLLF------- 974 (1139)
Q Consensus 943 G~I~idG~di~~~~l----------~~lR-------------------------------~~i~~V~Qdp~LF------- 974 (1139)
+.|.+|..++...+. +.+| +..|+++|+..++
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 336666666543221 1112 2357777776544
Q ss_pred --------------------------cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 975 --------------------------SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 975 --------------------------~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
..|+++++.++......++..++++.+||.. ..++..+.+||||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGG 809 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGG 809 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHH
Confidence 2467777776643333456667777777742 2356677899999
Q ss_pred HHHHHHHHHHhcCCC---CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1029 QKQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1029 QrQrlalARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||++|||||+++| +||||||||++||+.+.+.|++.|+++. ..+.|||+|+|+++.+..||+|++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~---------~~G~TVIvI~HdL~~i~~ADrIivL 880 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV---------DRGNTVIVIEHNLDVIKNADHIIDL 880 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHhCCEEEEe
Confidence 999999999999876 7999999999999999999999999764 2344699999999999999999999
Q ss_pred ------eCCEEEEecChhHHhhccCChHHHH
Q 048639 1106 ------DKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1106 ------~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
++|+|++.|+|++++++++++..++
T Consensus 881 gp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 881 GPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp ESSSGGGCCEEEEEESHHHHHSCTTCHHHHH
T ss_pred cCCCCCCCCEEEEEcCHHHHHhCCchHHHHH
Confidence 8999999999999998754443333
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=463.76 Aligned_cols=235 Identities=29% Similarity=0.504 Sum_probs=218.5
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..+.|+++||+++|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.|+..++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 44689999999999632 3579999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++++||||++.+|+.|+++|+.++. ...+++++++++.+++.+++++.|.++++.+++.|.+||||||||+||||||++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 467889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||+.++..+++.|++.. . ++|+|+|||+++.+..||||+||++|+|++.|+|+|+++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---------~-~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF---------A-DCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT---------T-TSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh---------C-CCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999998653 3 355999999999988899999999999999999999999
Q ss_pred ccCChHHH
Q 048639 1122 ESQGVYSR 1129 (1139)
Q Consensus 1122 ~~~g~f~~ 1129 (1139)
++...|..
T Consensus 243 ~p~~~~va 250 (390)
T 3gd7_A 243 YPADRFVA 250 (390)
T ss_dssp CCSBHHHH
T ss_pred CCCchHHH
Confidence 87777754
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=446.18 Aligned_cols=236 Identities=46% Similarity=0.778 Sum_probs=217.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998777667788999
Q ss_pred EEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||+|.+|+.|++|||.++ .+...++++.++++..++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 44556777888888888888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 9999999999999999999999988777899999999999887799999999999999999999988777788887644
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=421.45 Aligned_cols=230 Identities=33% Similarity=0.513 Sum_probs=204.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34799999999999999999999999999999999999999999999999 39
Q ss_pred eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 965 GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
+||||+|.+|..|++|||.++.. ..+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998743 33456677888899988888899999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+++.+.+.|.+.. +..+++|+|+|||+++.+..||+|++|++|++++.|+|++++++ .
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~-------~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~ 219 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPK-------GMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-D 219 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTT-------STTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-T
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHH-------hhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-c
Confidence 999999999999999999999985211 01234569999999999888999999999999999999999976 7
Q ss_pred ChHHHHHHHHhhc
Q 048639 1125 GVYSRLYQLQAFS 1137 (1139)
Q Consensus 1125 g~f~~l~~~~~~~ 1137 (1139)
+.|.+++..|..+
T Consensus 220 ~~~~~~~~~~~~~ 232 (237)
T 2cbz_A 220 GAFAEFLRTYASH 232 (237)
T ss_dssp SHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 8999999887644
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=446.15 Aligned_cols=227 Identities=29% Similarity=0.517 Sum_probs=212.4
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+.|+++|++|+|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3579999999999632 3569999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+|+||||++.+|+.||+||+.+.. ....+++.++++..++.+++++.|.++++.+++.+.+|||||||||+|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3467888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||||++|++|+|++.|+++++.+.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999887778999999999998888999999999999999999999865
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=415.52 Aligned_cols=222 Identities=28% Similarity=0.447 Sum_probs=197.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 4
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++|++||+.++.. ..+.+..++++.+++.+++..+|.+.++.+++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 3455667788889999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHH-HhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1044 AIMLLDEATSALDAESERVIVSAL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
++||||||||+||+.+++.+.+.+ ++.. +++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----------~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----------ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCT----------TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhh----------CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999974 4332 24569999999999888999999999999999999999875
Q ss_pred cCChHHHHH
Q 048639 1123 SQGVYSRLY 1131 (1139)
Q Consensus 1123 ~~g~f~~l~ 1131 (1139)
.+.|.+++
T Consensus 220 -~~~~~~~~ 227 (229)
T 2pze_A 220 -QPDFSSKL 227 (229)
T ss_dssp ---CHHHHH
T ss_pred -ChHHHHHh
Confidence 46676654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=414.33 Aligned_cols=221 Identities=27% Similarity=0.416 Sum_probs=194.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 369999999999632 35799999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+|+||+|++|+.|++||+.++.. .......+.++..++.+++..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 2334445556666777888999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHH
Q 048639 415 PILLLDEATSALDSESEKLVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 490 (1139)
++||||||||+||+.+++.+.+.+ ..+.+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 999999999999999999999864 4545689999999999988779999999999999999999997765555444
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-48 Score=417.02 Aligned_cols=225 Identities=32% Similarity=0.523 Sum_probs=199.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999632 35699999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+||||+|++++.|++|||.++... ..+...++.+..++.+.+..+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997532 2233444555555566778889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 416 ILLLDEATSALDSESEKLVQEALE---RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
+||||||||+||+.++..+.+.+. .+.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++.
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 999999999999999999999884 34458999999999999878999999999999999999999888888888876
Q ss_pred hcc
Q 048639 493 MQN 495 (1139)
Q Consensus 493 ~~~ 495 (1139)
.|.
T Consensus 228 ~~~ 230 (237)
T 2cbz_A 228 TYA 230 (237)
T ss_dssp HTC
T ss_pred HHH
Confidence 553
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-47 Score=469.35 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=156.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh-ccc----c---CCcc-------------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL-RFY----D---PNEG------------- 943 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~-rl~----~---p~~G------------- 943 (1139)
.|+++|++. .+|+||||+|++||.+||+|+||||||||+++++ +.. . +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999862 2699999999999999999999999999999864 221 1 1223
Q ss_pred EEEECCcccCCCCh---H-------HHh---------hhceEEcccccc---------------------c---------
Q 048639 944 IILIDGKGIKEYNL---R-------RLR---------SQIGLVQQEPLL---------------------F--------- 974 (1139)
Q Consensus 944 ~I~idG~di~~~~l---~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 974 (1139)
.|.+||.++..-+. . ..| +.+||+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 48899988753221 1 122 346888885321 0
Q ss_pred -------------------------cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccc-cccCCCCCCChH
Q 048639 975 -------------------------SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDT-VVGEKGCQLSGG 1028 (1139)
Q Consensus 975 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt-~v~e~G~~LSgG 1028 (1139)
..|+.+|+.++......++..++++.++| +. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL-----------~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL-----------GYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTC-----------SSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCC-----------CcccccCchhhCCHH
Confidence 12445555543211111233445555544 32 344556789999
Q ss_pred HHHHHHHHHHhcCCC---CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1029 QKQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1029 QrQrlalARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. ..++|||+|+|+++.+..||||++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---------~~G~TVIvisHdl~~i~~aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV---------DNGDTVLVIEHNLDVIKTADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 999999999999875 9999999999999999999999998764 3345699999999999889999999
Q ss_pred ------eCCEEEEecChhHHhhccC
Q 048639 1106 ------DKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1106 ------~~G~ive~G~~~eLl~~~~ 1124 (1139)
++|+|++.|+|+++.+.+.
T Consensus 921 ~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 921 GPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCCCCCCCEEEEecCHHHHHhCch
Confidence 7899999999999997643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=433.54 Aligned_cols=228 Identities=31% Similarity=0.475 Sum_probs=197.0
Q ss_pred ccEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---
Q 048639 884 GRIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR--- 959 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~--- 959 (1139)
.-|+++||+++|+... ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999988765
Q ss_pred HhhhceEEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 960 LRSQIGLVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
+|++||||||+|.+|.. |++||+.++.. .. .++++.++++.++|.++..+.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47889999999998865 99999986421 11 2346788899999877654433 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|||||+.+|+|||||||||+||+.+.+.|.+.|++... ..++|||+|||+++.+.. ||||+||++|+|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~--------~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR--------RLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987641 224569999999999986 9999999999999
Q ss_pred EecChhHHhhccCChHHHH
Q 048639 1112 EMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~~l 1130 (1139)
+.|++++++.++...|.+-
T Consensus 244 ~~g~~~ev~~~p~~~~~~~ 262 (366)
T 3tui_C 244 EQDTVSEVFSHPKTPLAQK 262 (366)
T ss_dssp ECCBHHHHHSSCCSHHHHH
T ss_pred EEcCHHHHHhCCCcHHHHH
Confidence 9999999998777666443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-47 Score=416.62 Aligned_cols=223 Identities=27% Similarity=0.467 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 333 (1139)
.|+++|++|+|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 359999999999999999999999999999999999999999999999999842 33456788
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+||||||+| .+|..||+||+.++.. ....++..+. +.+.++.+ |++......+.+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 4778899999998632 2233333222 22345555 55566678889999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchH
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 486 (1139)
|+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++.....
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 237 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV 237 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 999999999999999999999999999998875 3 8999999999999976 999999999999999999999765443
Q ss_pred H
Q 048639 487 Y 487 (1139)
Q Consensus 487 ~ 487 (1139)
+
T Consensus 238 ~ 238 (275)
T 3gfo_A 238 I 238 (275)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-47 Score=428.54 Aligned_cols=222 Identities=30% Similarity=0.503 Sum_probs=190.3
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---
Q 048639 255 GNIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS--- 330 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~--- 330 (1139)
..|+++|++++|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999887654
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+|++||||||++.+|+. ||+||+.++.. ....++..+. +.+.++.+ |+.......+.+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 47889999999999875 99999998631 1223322221 22334444 455566788899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+.+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|++++.|++++++..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999999874 38999999999999876 999999999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=411.86 Aligned_cols=217 Identities=30% Similarity=0.513 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL---- 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 331 (1139)
|+++|++|+|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCCCcc-ccccCCCCChHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNM-----DADDEQIYNASMMANAHSFISQLPDQYSTE-LGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-i~~~g~~LSgGqkqRi 404 (1139)
|++||||||+|.+|+. ||+||+.++.. ....++..+ .+.+.++.+ |+... ....+.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence 4579999999999986 99999987421 122222211 122334444 34333 3678899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 480 (1139)
+|||||+.+|++||||||||+||+.++..+.+.++++.+ |+|+|+|||+++.+..||+|++|++|++++.++.+++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999999999999999988743 8999999999997767999999999999999987765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=417.95 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999642 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred hceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++|||||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+ ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 5788999999986521 122 3457788888888765432 23579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++. . ..++|||+|||+++.+.. ||||++|++|++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~-------~-~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ-------K-ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH-------h-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998753 0 114569999999999976 999999999999999
Q ss_pred cChhHHhhc
Q 048639 1114 GSHSTLVAE 1122 (1139)
Q Consensus 1114 G~~~eLl~~ 1122 (1139)
|+|++++++
T Consensus 226 g~~~~~~~~ 234 (275)
T 3gfo_A 226 GNPKEVFAE 234 (275)
T ss_dssp ECHHHHTHH
T ss_pred CCHHHHhcC
Confidence 999999865
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-47 Score=410.82 Aligned_cols=217 Identities=31% Similarity=0.440 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL---- 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l---- 960 (1139)
|+++||+++|+.++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987764
Q ss_pred hhhceEEccccccccc-cHHHHhccCC-----CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 961 RSQIGLVQQEPLLFSC-SIRNNICYGN-----EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~g-TIreNL~~~~-----~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|++++||||+|.+|.. |++||+.++. .... .+++.++++.+++.+... .....+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh----------hCChhhCCHHHH
Confidence 4579999999999986 9999997531 1112 345677788888755321 223457999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
||++|||||+.+|+|||||||||+||+.+.+.+.+.|++... ..++|||+|||+++....||||++|++|+|
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE--------EDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999987640 214569999999997777999999999999
Q ss_pred EEecChhHHh
Q 048639 1111 VEMGSHSTLV 1120 (1139)
Q Consensus 1111 ve~G~~~eLl 1120 (1139)
++.|+++++.
T Consensus 224 ~~~~~~~~~~ 233 (235)
T 3tif_A 224 EREEKLRGFD 233 (235)
T ss_dssp EEEEECC---
T ss_pred EEEcChhhhc
Confidence 9999988764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=409.25 Aligned_cols=220 Identities=35% Similarity=0.514 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 345567889
Q ss_pred hceEEccccccccc-cHHHHhccCC---CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGN---EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~---~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
+++||||++.+|.. |++||+.++. ...+ ++++.++++.+++.++..+ ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999876 9999998741 1112 3467888899888765433 23579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|++|++++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA---------NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998764 234569999999999875 999999999999999
Q ss_pred cChhHHhhccCChH
Q 048639 1114 GSHSTLVAESQGVY 1127 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f 1127 (1139)
|+++++++++...+
T Consensus 241 g~~~~~~~~~~~~~ 254 (263)
T 2olj_A 241 GKPEDLFDRPQHER 254 (263)
T ss_dssp ECHHHHHHSCCSHH
T ss_pred CCHHHHHhCcccHH
Confidence 99999987644444
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=405.39 Aligned_cols=219 Identities=27% Similarity=0.477 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987776654 556
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|+||||++.+|+. |++||+.++. +....++..+. +.+.++.++ |++...++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 21111222221 223455553 34455678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 58999999999988765 999999999999999999998653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=404.12 Aligned_cols=215 Identities=23% Similarity=0.422 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~ 963 (1139)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988877665 456
Q ss_pred ceEEccccccccc-cHHHHhccCC-CcCC----HHHHHHHHHHcC-chHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGN-EAAS----EAEIVEVSKKAN-IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~-~~~s----d~ei~~al~~~~-l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||+|.+|.+ |++||+.++. +..+ ++.+.++++..+ +.+ ..+....+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999999987 9999998753 1111 233445555552 433 23444568999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~---------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN---------QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999998764 234459999999988765 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
+++++++
T Consensus 223 ~~~~~~~ 229 (240)
T 1ji0_A 223 ASELLDN 229 (240)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9999853
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=408.25 Aligned_cols=216 Identities=26% Similarity=0.435 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|. +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+.+++++
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccc-ccccHHHHhccCCC----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLL-FSCSIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~~~----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|++|++.+ |..|++||+.++.. ...++++.++++.+++.++.++ . ..+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------D----YRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------B----GGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHHHHHHHHHH
Confidence 999999976 67899999987532 2235678889999988654322 2 347999999999999999
Q ss_pred cC------CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1040 LK------RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1040 lr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
++ +|++||||||||+||+.+.+.+.+.|+++. ..+++|+|+|||+++.+.. ||||++|++|++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~--------~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT--------RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH--------HHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH--------HcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999999999998764 1234579999999999875 99999999999999
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|+++++++.
T Consensus 229 ~g~~~~~~~~ 238 (266)
T 4g1u_C 229 CGTPEEVLNA 238 (266)
T ss_dssp EECHHHHCCH
T ss_pred EcCHHHHhCc
Confidence 9999999854
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-46 Score=419.10 Aligned_cols=225 Identities=31% Similarity=0.502 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC--CChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--YNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~ 962 (1139)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.. .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999832 22334578
Q ss_pred hceEEcccccccc-ccHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+||||+|++.+|. .|++||+.++... ..++++.++++.+++.++.++.| .+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 4999999986321 12356888999999887655443 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||+.+|++||||||||+||+.+...+++.|++.. . ..++|+|+|||+++.+.. ||||+||++|+|++.|
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~-------~-~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL-------R-ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-------H-HTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999998776543 0 234569999999999876 9999999999999999
Q ss_pred ChhHHhhccCChHHHHH
Q 048639 1115 SHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1115 ~~~eLl~~~~g~f~~l~ 1131 (1139)
+|+++++++...|...+
T Consensus 222 ~~~el~~~p~~~~~a~~ 238 (359)
T 3fvq_A 222 SPHELYRQPADLDAALF 238 (359)
T ss_dssp CHHHHHHSCSCHHHHHH
T ss_pred CHHHHHhCcccHHHHHh
Confidence 99999988777665443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=422.95 Aligned_cols=222 Identities=30% Similarity=0.464 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999987765 4779
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.||.. |++|||.++.. ..+ ++++.++++.+++.++.++.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 999999999965 99999987521 122 356788899999877654433 579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|+|||||||||+||+.+...+++.|+++.. ..++|+|+|||+++.+.. ||||+||++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~--------~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK--------RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999987640 224569999999999876 999999999999999999
Q ss_pred hHHhhccCChHHHH
Q 048639 1117 STLVAESQGVYSRL 1130 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l 1130 (1139)
+++++++...|...
T Consensus 219 ~~l~~~p~~~~v~~ 232 (381)
T 3rlf_A 219 LELYHYPADRFVAG 232 (381)
T ss_dssp HHHHHCCSBHHHHH
T ss_pred HHHHhCCccHHHHH
Confidence 99998877776543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-46 Score=406.39 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999999988888999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc--
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK-- 412 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~-- 412 (1139)
+|++|++.+ ++.||+||+.++.......+..+ .+.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~ 160 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQ-----ALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLW 160 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHH-----HHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 999999987 56799999998753221111111 112334444 44445566778999999999999999999
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 ----NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ----~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 161 ~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 161 QPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 9999999999999999999999999988743 5799999999999875 999999999999999999998754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=402.52 Aligned_cols=218 Identities=32% Similarity=0.513 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 333 (1139)
.|+++|++++|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999963 46999999999999999999999999999999999999999999999999985 334556788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+|+||||++.+|+. |++||+.++. .....++.. ..+.+.++.+ |+.......+.+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999876 9999998852 112222211 1223455555 55556677888999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998874 48999999999999875 999999999999999999998653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=405.42 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC----------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE---------- 954 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 954 (1139)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999952 469999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhhhceEEccccccccc-cHHHHhccCC---CcCC----HHHHHHHHHHcCchHH-HhhCCCCccccccCCC
Q 048639 955 YNL---RRLRSQIGLVQQEPLLFSC-SIRNNICYGN---EAAS----EAEIVEVSKKANIHDF-ISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 955 ~~l---~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~---~~~s----d~ei~~al~~~~l~~~-i~~lp~gldt~v~e~G 1022 (1139)
++. ..+|++++||||++.+|.. |++||+.++. ...+ ++++.++++.+++.++ ..+. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 443 3568899999999998876 9999998731 1112 3567888999998876 4432 3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~Dr 1101 (1139)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. |||
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~ 222 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA---------EEGKTMVVVTHEMGFARHVSSH 222 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---------HTTCCEEEECSCHHHHHHHCSE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCE
Confidence 5799999999999999999999999999999999999999999998764 224569999999999875 999
Q ss_pred EEEEeCCEEEEecChhHHhhccCChH
Q 048639 1102 IVVMDKGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1102 I~vl~~G~ive~G~~~eLl~~~~g~f 1127 (1139)
|++|++|++++.|+++++++++...+
T Consensus 223 v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 223 VIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred EEEEECCEEEEeCCHHHHHhCcchHH
Confidence 99999999999999999987644444
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-46 Score=418.69 Aligned_cols=219 Identities=29% Similarity=0.514 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 333 (1139)
.|+++|++++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999832 22234567
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+||||||++.+|+. ||+|||.|+... ...++..+. +.+.++.+ |++......+.+|||||||||+|||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-----IEAMLELT--GISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH-----HHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999975 999999998532 112222111 12233333 455566778899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+.+|++||||||||+||+.++..+.+.+.++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999988776643 48999999999999865 9999999999999999999997653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=402.98 Aligned_cols=215 Identities=25% Similarity=0.410 Sum_probs=188.8
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred ceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||+|.+|.+ |++||+.++.. ..+ ++++.++++.+++.++..+ ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999998876 99999986421 112 2467788888888766433 2357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS---------QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 229 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999764 234569999999999987 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
++++.+.
T Consensus 230 ~~~~~~~ 236 (256)
T 1vpl_A 230 VEELKER 236 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999753
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=418.39 Aligned_cols=216 Identities=31% Similarity=0.526 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.||+. ||+|||.|+.. ....++..+ .+.+.++.+ |++......+.+|||||||||+|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 999999999975 99999998632 122332222 223445555 55566778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+..+..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999999865 999999999999999999999764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=401.40 Aligned_cols=219 Identities=21% Similarity=0.399 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH-HHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK-SLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876643 45778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCC--CCHHH--------HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQ--------IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~--------~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
|+||||++.+|. .|++||+.++... ..... .........+.+.++.+ |++....+.+.+||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHH
Confidence 999999999886 5999999986421 11000 00001112234566666 66677788899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999998874 48999999999999865 99999999999999999998
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=402.61 Aligned_cols=215 Identities=29% Similarity=0.495 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPE--VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998752 67889
Q ss_pred ceEEcccc--ccccccHHHHhccCCC-----cCCHHHHHHHHHHcCch--HHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 964 IGLVQQEP--LLFSCSIRNNICYGNE-----AASEAEIVEVSKKANIH--DFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 964 i~~V~Qdp--~LF~gTIreNL~~~~~-----~~sd~ei~~al~~~~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++||||+| .++..|++||+.++.. ...++++.++++.+++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5678899999987531 12356789999999998 7755443 479999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|++|++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK---------TLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 234569999999999986 999999999999999
Q ss_pred cChhHHhhcc
Q 048639 1114 GSHSTLVAES 1123 (1139)
Q Consensus 1114 G~~~eLl~~~ 1123 (1139)
|+++++++++
T Consensus 220 g~~~~~~~~~ 229 (266)
T 2yz2_A 220 GTRMEFLEKY 229 (266)
T ss_dssp EEHHHHHHHS
T ss_pred CCHHHHhcCc
Confidence 9999998653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-45 Score=400.11 Aligned_cols=211 Identities=22% Similarity=0.385 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH-HHhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR~~ 963 (1139)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999877654 46788
Q ss_pred ceEEcccccccc-ccHHHHhccCCCc---------------CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCC
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNEA---------------AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC 1023 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~~---------------~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1023 (1139)
++||||+|.+|. .|++||+.++... .. .+++.++++..++.++. .....
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 999999998886 6999999875211 11 23567777777775543 23345
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEE
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVI 1102 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI 1102 (1139)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. ||||
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~v 223 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK---------AKGITFLIIEHRLDIVLNYIDHL 223 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCCSTTGGGCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEE
Confidence 799999999999999999999999999999999999999999999764 234569999999999875 9999
Q ss_pred EEEeCCEEEEecChhH
Q 048639 1103 VVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1103 ~vl~~G~ive~G~~~e 1118 (1139)
++|++|++++.|++++
T Consensus 224 ~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 224 YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEETTEEEEEEESHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999999
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=393.27 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 46999999999999999999999999999999999999999999999999998877653 44
Q ss_pred -hhceEEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 -SQIGLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 -~~i~~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++++||||+|.+|. .|++||+.++.. ...++++.++++.+++.++..+ ...+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-----------KPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 78999999999886 599999976421 1123467788888887654332 2357999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEe
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1113 (1139)
+|||||+.+|++||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+..||+|++|++|++++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN---------EGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------HCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999998764 234569999999998867999999999999999
Q ss_pred cC
Q 048639 1114 GS 1115 (1139)
Q Consensus 1114 G~ 1115 (1139)
|+
T Consensus 221 g~ 222 (224)
T 2pcj_A 221 IT 222 (224)
T ss_dssp EE
T ss_pred ee
Confidence 86
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=396.87 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=185.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999963 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
|+||||++.+++. |++||+.++.. ....++..+ .+.+.++.+ |++.....++.+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998876 99999987521 112221111 122334444 4555567788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 58999999999999876 99999999999999999998853
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=392.61 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 333 -KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 333 -~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
++|+||||++.+|+. |++||+.++.. ....++. ...+.+.++.+ |+.......+.+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 689999999998864 99999987521 1111111 11233455655 5555667788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
||+.+|++||||||||+||+.++..+.+.++++. +|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 5899999999999886699999999999999886
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=412.99 Aligned_cols=220 Identities=30% Similarity=0.533 Sum_probs=192.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887653 6789
Q ss_pred eEEccccccccc-cHHHHhccCCCc--C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEA--A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~--~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++... . .++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999986321 1 2356888999999987755543 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 218 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ--------ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 219 ~~l~~~p~~~~~ 230 (359)
T 2yyz_A 219 DEVYDSPKNMFV 230 (359)
T ss_dssp HHHHHSCSBHHH
T ss_pred HHHHhCcccHHH
Confidence 999987666554
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=415.04 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987521 112 346788899998876654433 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+...+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 218 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK--------ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH--------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 219 ~~~~~~p~~~~~ 230 (362)
T 2it1_A 219 DEVYYKPKYKFV 230 (362)
T ss_dssp HHHHHSCSBHHH
T ss_pred HHHHhCccchHH
Confidence 999987666554
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=399.15 Aligned_cols=218 Identities=29% Similarity=0.507 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC----------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD---------- 325 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~---------- 325 (1139)
.|+++|++++|++ .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999963 469999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc-ccccCCCCC
Q 048639 326 LDL---KSLRKNIGAVSQEPSLFTG-SLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTE-LGQRGVQLS 397 (1139)
Q Consensus 326 ~~~---~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-i~~~g~~LS 397 (1139)
.+. ..+|++|+||||++.+|+. |++||+.++. .....++.. ..+.+.++.+ |+... ....+.+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3457789999999999876 9999998852 112222111 1223455555 55555 677888999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998874 48999999999999875 9999999999999999
Q ss_pred Chhhhhcc
Q 048639 476 THHSLLQT 483 (1139)
Q Consensus 476 ~~~~l~~~ 483 (1139)
+++++...
T Consensus 236 ~~~~~~~~ 243 (262)
T 1b0u_A 236 DPEQVFGN 243 (262)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99998653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-45 Score=412.71 Aligned_cols=222 Identities=28% Similarity=0.529 Sum_probs=192.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
..|+++||+++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred ceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999975 99999987521 112 456888999999987655443 47999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--------EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH--------HHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999987640 124569999999999876 99999999999999999
Q ss_pred hhHHhhccCChHH
Q 048639 1116 HSTLVAESQGVYS 1128 (1139)
Q Consensus 1116 ~~eLl~~~~g~f~ 1128 (1139)
|+++++++...|.
T Consensus 230 ~~~l~~~p~~~~~ 242 (355)
T 1z47_A 230 PEEVYEKPGTLFV 242 (355)
T ss_dssp HHHHHHSCSSHHH
T ss_pred HHHHHhCccchHH
Confidence 9999987666553
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=405.22 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999998 777888899
Q ss_pred hceEEcccccc-ccc--cHHHHhccCCC-------cCC---HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 963 QIGLVQQEPLL-FSC--SIRNNICYGNE-------AAS---EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 963 ~i~~V~Qdp~L-F~g--TIreNL~~~~~-------~~s---d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+++||||+|.+ |.. |++||+.++.. ... .+++.++++.+++.++..+ ...+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-----------YIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHH
Confidence 99999999865 554 99999987531 012 2457788888888655322 235799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEE--EEEecCchhhhc-CCEEEEEe
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQ--ITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTv--I~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|| |+|||+++.+.. ||||++|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS---------DSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH---------HCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999998764 223349 999999999865 99999999
Q ss_pred CCEEEEecChhHHhhc
Q 048639 1107 KGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl~~ 1122 (1139)
+|++++.|++++++++
T Consensus 238 ~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 238 DGQSIQQGAVEDILTS 253 (279)
T ss_dssp TTEEEEEEEHHHHCSH
T ss_pred CCEEEEECCHHHHhcc
Confidence 9999999999999753
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-45 Score=402.80 Aligned_cols=217 Identities=29% Similarity=0.463 Sum_probs=178.9
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+.|+++||++.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999864 2599999999999999999999999999999999999999999999998
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++||||+|.+|++|++||+. +. ...+..+.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999998 53 2345566778888999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHH-HhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1043 PAIMLLDEATSALDAESERVIVSAL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
|++||||||||+||+.++..+.+.+ ++. ..++|||+|||+++.+..||+|++|++|++++.|+|+++++
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~----------~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKL----------MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCC----------TTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHh----------hCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999874 332 22456999999999988899999999999999999999986
Q ss_pred ccCChHHHH
Q 048639 1122 ESQGVYSRL 1130 (1139)
Q Consensus 1122 ~~~g~f~~l 1130 (1139)
. ...|.+.
T Consensus 248 ~-~~~~~~~ 255 (290)
T 2bbs_A 248 L-RPDFSSK 255 (290)
T ss_dssp H-CHHHHHH
T ss_pred h-cHHHHHH
Confidence 4 3445443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=411.44 Aligned_cols=217 Identities=29% Similarity=0.524 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+|+. |++|||.|+.... ..++. ...+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~-----~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEV-----EKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHT-----THHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 9999999975321 11111 11223445555 55556677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++....
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999988743 8999999999999865 9999999999999999999997653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=402.01 Aligned_cols=218 Identities=27% Similarity=0.385 Sum_probs=186.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHh
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLR 332 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~ 332 (1139)
..|+++|++++|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 67777788
Q ss_pred cceEEEecCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHH
Q 048639 333 KNIGAVSQEPSL-FTG--SLMDNIKVGNMD-------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 333 ~~i~~v~Q~~~l-~~~--ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkq 402 (1139)
++|+||+|++.+ +.. |++||+.++... ...+ . ...+.+.++.+ |++......+.+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-I-----RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHH-H-----HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH-H-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999865 444 999999987421 1111 1 11233445555 5556677888999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeE--EEEecCccchhc-cCEEEEEeCcEEEEecChh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTV--ILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 478 (1139)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988743 8999 999999999865 9999999999999999999
Q ss_pred hhhcc
Q 048639 479 SLLQT 483 (1139)
Q Consensus 479 ~l~~~ 483 (1139)
++.+.
T Consensus 249 ~~~~~ 253 (279)
T 2ihy_A 249 DILTS 253 (279)
T ss_dssp HHCSH
T ss_pred HHhcc
Confidence 98653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=412.86 Aligned_cols=220 Identities=26% Similarity=0.499 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999964 99999998642 122 346788999999987765544 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 226 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--------KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 226 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 227 ~~l~~~p~~~~~ 238 (372)
T 1v43_A 227 TEVYLRPNSVFV 238 (372)
T ss_dssp HHHHHCCSBHHH
T ss_pred HHHHhCcccHHH
Confidence 999987666664
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=393.02 Aligned_cols=211 Identities=29% Similarity=0.456 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+ + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ..|++++
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999987643 3578899
Q ss_pred EEccccccccc-cHHHHhccCCCcC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNEAA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
||||+|.+|.. |++||+.++.... .++++.++++.+++.++..+. ..+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHHH
Confidence 99999999876 9999998864211 245678888888886553332 3579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
++|++||||||||+||+.+.+.+.+.|++... ..++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--------EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH--------HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999987630 223459999999998865 999999999999999999999
Q ss_pred hhcc
Q 048639 1120 VAES 1123 (1139)
Q Consensus 1120 l~~~ 1123 (1139)
++++
T Consensus 215 ~~~~ 218 (240)
T 2onk_A 215 FSAK 218 (240)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=401.42 Aligned_cols=216 Identities=27% Similarity=0.439 Sum_probs=176.3
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+.|+++|++|.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+|+||||++.+|++|++||+. +.. .....+.++++..++.+.+..+|.++++.+++++.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 599999999999999999998 542 233444555666677788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 489 (1139)
|++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++......|..
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 254 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHH
Confidence 9999999999999999999999864 444468999999999998877999999999999999999998764444433
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=410.18 Aligned_cols=218 Identities=28% Similarity=0.518 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+ +. +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++. .|++++
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987554 478899
Q ss_pred EEccccccccc-cHHHHhccCCC---cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE---AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~---~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
||||++.+|.. |++||+.++.. ...++++.++++.+++.++.++.| .+||||||||+||||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999987521 112377889999999876654433 5799999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+|++||||||||+||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|++++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~--------~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHK--------KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHH--------HTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999987640 224569999999998865 9999999999999999999999
Q ss_pred hccCChHH
Q 048639 1121 AESQGVYS 1128 (1139)
Q Consensus 1121 ~~~~g~f~ 1128 (1139)
+++...|.
T Consensus 217 ~~p~~~~~ 224 (348)
T 3d31_A 217 EKPVEGRV 224 (348)
T ss_dssp SSCCTTHH
T ss_pred hCcccHHH
Confidence 87666654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=409.60 Aligned_cols=216 Identities=33% Similarity=0.517 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 99999998631 11222221 1223445555 55556677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999998865 999999999999999999999764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=410.44 Aligned_cols=218 Identities=29% Similarity=0.516 Sum_probs=186.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999932 2469999999999999999999999999999999999999999999999999977654 3678
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
||||+|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999975 99999998631 11222211 1223445555 5555667788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999988743 8999999999999865 999999999999999999999764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-45 Score=412.61 Aligned_cols=222 Identities=28% Similarity=0.463 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCcc--cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHH
Q 048639 885 RIEFQNIKFNYPSRPEVT--VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRR 959 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~--vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~ 959 (1139)
.|+++||+++|+ +.+ +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 389999999995 246 999999999999999999999999999999999999999999999999986521 334
Q ss_pred HhhhceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 960 LRSQIGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
.|++++||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57889999999999975 99999988632 112 356888999999987755443 4799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|||||+++|++||||||||+||+.+...+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--------RLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH--------HHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987640 224569999999999876 9999999999999
Q ss_pred EecChhHHhhccCChHH
Q 048639 1112 EMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~ 1128 (1139)
+.|+|+++++++...|.
T Consensus 221 ~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 221 QVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp EEECHHHHHHSCSSHHH
T ss_pred EEcCHHHHHhCcccHHH
Confidence 99999999987666654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=389.65 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999986533 3467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||++.+|+. |++||+.++........ . ...+.+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~---~--~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVE---R--DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHH---H--HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCch---H--HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999876 99999999753222111 0 12234556666 55556677888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+||||||||+||+.+++.+.+.++++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999988743 8999999999998865 99999999999999999998854
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=392.29 Aligned_cols=209 Identities=22% Similarity=0.356 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|+++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999985 4899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred eEEccccccccc-cHHHHhccCCC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+||||+|.+|.+ |++||+.++.. ..+++++.++++.+++.++..+ ...+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998632 2247789999999998766432 3457999999999999999999
Q ss_pred CC-------EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh-cCCEEEEEeCCEEEEec
Q 048639 1043 PA-------IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI-NSDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1043 p~-------ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 1114 (1139)
|+ +||||||||+||+.+.+.+.+.|++.. .+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS---------QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99 999999999999999999999998764 23456999999999985 49999999999999999
Q ss_pred ChhHHhh
Q 048639 1115 SHSTLVA 1121 (1139)
Q Consensus 1115 ~~~eLl~ 1121 (1139)
+++++++
T Consensus 216 ~~~~~~~ 222 (249)
T 2qi9_C 216 RREEVLT 222 (249)
T ss_dssp EHHHHSC
T ss_pred CHHHHhc
Confidence 9999975
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=396.22 Aligned_cols=213 Identities=31% Similarity=0.509 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCC--CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPD--QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~--~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.|+++|++++|+.... +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 3789999999962111 4699999999999999999999999999999999999999999999999988642 6678
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCCC--ccccccCCCCChHHHHHH
Q 048639 334 NIGAVSQEP--SLFTGSLMDNIKVGNMD-----ADDEQIYNASMMANAHSFISQLPDQYS--TELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 334 ~i~~v~Q~~--~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~i~~~g~~LSgGqkqRi 404 (1139)
+|+||+|+| .+++.|++||+.++... ...+++.+++ +.+ |++ ........+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM---------EFV--GLDFDSFKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHH---------HHT--TCCHHHHTTCCGGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHH---------HHc--CcCCcccccCChhhCCHHHHHHH
Confidence 899999997 46678999999987421 1123333333 333 344 345566789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 58999999999999876 99999999999999999998864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=410.55 Aligned_cols=216 Identities=28% Similarity=0.447 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||||++.+|+. ||+|||.|+... ...++.. ..+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999998532 2222221 1223445555 55556677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999999865 999999999999999999999764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=405.62 Aligned_cols=211 Identities=33% Similarity=0.514 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999977554 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
||||++.+|+. ||+||+.|+.. ....+++ .+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v---------~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV---------LDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHH---------HHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH---------HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 0111222 2344444 45555677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998874 38999999999998865 9999999999999999999997653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=393.69 Aligned_cols=210 Identities=26% Similarity=0.380 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEECCcccCCCChHHH-hh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNLRRL-RS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~l~~l-R~ 962 (1139)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887665 45
Q ss_pred hceEEccccccccc-cHHHHhccCCC---c--CC----HHHHHHHHHHcCch-HHHhhCCCCccccccCCCCC-CChHHH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGNE---A--AS----EAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQ-LSGGQK 1030 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~~---~--~s----d~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~-LSgGQr 1030 (1139)
.++||||+|.+|.+ |+++|+.++.. . .. ++++.++++..++. ++.++ ++ .+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-------YL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-------BT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-------Cc----ccCCCHHHH
Confidence 69999999999875 99999975321 0 11 34577788888873 44322 22 34 999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl~~G 1108 (1139)
||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. ||||++|++|
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR---------GPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC---------STTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------hcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999874 334569999999999886 5999999999
Q ss_pred EEEEecChhH
Q 048639 1109 EVVEMGSHST 1118 (1139)
Q Consensus 1109 ~ive~G~~~e 1118 (1139)
++++.|+++.
T Consensus 221 ~i~~~g~~~~ 230 (250)
T 2d2e_A 221 RVVATGGPEL 230 (250)
T ss_dssp EEEEEESHHH
T ss_pred EEEEEeCHHH
Confidence 9999999983
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=410.42 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCc--cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---HHH
Q 048639 256 NIDIRDVCFAYPSRPDQL--ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~--~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~ 330 (1139)
.|+++|++++|++ .+ +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999953 46 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
.+++||||||++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 46789999999999976 999999997532 22222211 223445555 555566778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988743 8999999999999865 9999999999999999999997653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=387.45 Aligned_cols=208 Identities=23% Similarity=0.378 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+++++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999985 3899999999999999999999999999999999999999 9999999999888888888899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+||+|++.+|.. |++||+.++.. ....+++. +.++.+ |++......+.+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------DVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHH---------HHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998742 11222232 334444 455556778889999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchh-ccCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PP-------ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 5899999999999985 499999999999999999999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=411.97 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC------CChH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE------YNLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~------~~l~ 958 (1139)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. ++.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 2469999999999999999999999999999999999999999999999999876 544
Q ss_pred HHhhhceEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+++|+||||++.+|. .|++||+.++.. ..+ ++++.++++.+++.++.++.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 599999987521 112 346788899999877654433 479999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|+||||||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 218 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR--------QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEECCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999987640 124569999999999875 999999999999
Q ss_pred EEecChhHHhhccCChHH
Q 048639 1111 VEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~ 1128 (1139)
++.|+|+++++++...|.
T Consensus 219 ~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 219 QQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp EEEECHHHHHHSCSBHHH
T ss_pred EEeCCHHHHHhCcccHHH
Confidence 999999999987666664
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-44 Score=408.11 Aligned_cols=216 Identities=28% Similarity=0.484 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC------CCHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD------LDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~------~~~~ 329 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 469999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
.+++||||+|++.+|+. |++|||.|+.. ....++..+ .+.+.++.+ |++......+.+||||||||++|
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 35789999999999964 99999998632 122222211 122334444 45555677788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 8999999999999865 999999999999999999998754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-44 Score=394.36 Aligned_cols=216 Identities=22% Similarity=0.346 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEECCcccCCCChHHH-h
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNLRRL-R 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~l~~l-R 961 (1139)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred hhceEEccccccccc-cHHHHhccCC---------CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGN---------EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~---------~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+.++||||+|.+|.+ |+++|+.++. +..+ ++++.++++..++.+.. .+..++ .+|||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~---~~LSg 167 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRSVN---VGFSG 167 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSBTT---TTCCH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCCcc---cCCCH
Confidence 569999999998876 8999986421 1112 23566777777764211 122221 25999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEE
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVM 1105 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl 1105 (1139)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR---------DGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC---------CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999764 334569999999999875 8999999
Q ss_pred eCCEEEEecChhHHhh
Q 048639 1106 DKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~ 1121 (1139)
++|++++.|+++++..
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp ETTEEEEEECTTHHHH
T ss_pred ECCEEEEEcCHHHHhh
Confidence 9999999999998754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=389.96 Aligned_cols=214 Identities=28% Similarity=0.434 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc--cCCCccEEEECCccCCCCCHHHH-h
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLDLKSL-R 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 332 (1139)
.|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 4699999999999999999999999999999999998 88999999999999988776654 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCC-CChHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNM-----DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQ-LSGGQKQRI 404 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~-LSgGqkqRi 404 (1139)
..++||+|+|.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999999876 99999987421 01111111 1122344444 443 234555667 999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc--cCEEEEEeCcEEEEecChhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN--ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 479 (1139)
+|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999885 48999999999999876 59999999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=386.27 Aligned_cols=208 Identities=22% Similarity=0.340 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCC-CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSR-PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EEccccccccccHHHHhccCCC--cCCHHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 G-LVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~-~V~Qdp~LF~gTIreNL~~~~~--~~sd~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+ ||||+|.+ ..|++||+.++.+ ...++++.++++..++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 34567888899988876 5432 334579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CC-EEEEEeCCEEEEecChhH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD-VIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~D-rI~vl~~G~ive~G~~~e 1118 (1139)
++|++||||||||+||+.+.+.+.+.|++.. + |+|+|||+++.+.. || +|++|++|++++.|++++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----------~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYG----------K--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----------S--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhc----------C--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999998753 2 59999999999865 99 999999999999999999
Q ss_pred Hhhc
Q 048639 1119 LVAE 1122 (1139)
Q Consensus 1119 Ll~~ 1122 (1139)
+.+.
T Consensus 213 l~~~ 216 (263)
T 2pjz_A 213 LLES 216 (263)
T ss_dssp HHTE
T ss_pred HHhh
Confidence 9853
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=382.80 Aligned_cols=216 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc--cCCCccEEEECCccCCCCCHHHH-h
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLDLKSL-R 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 332 (1139)
.|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57999999999999987776554 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCC-CCChHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGN---------MDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGV-QLSGGQ 400 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~-~LSgGq 400 (1139)
..|+||+|+|.+|+. |++||+.++. +..+.++.. ..+.+.++.+ |+++ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998876 9999987531 111222211 1233455655 5543 3344554 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc--cCEEEEEeCcEEEEecCh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN--ADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 477 (1139)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998875 48999999999999875 899999999999999999
Q ss_pred hhhh
Q 048639 478 HSLL 481 (1139)
Q Consensus 478 ~~l~ 481 (1139)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=385.08 Aligned_cols=207 Identities=17% Similarity=0.334 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 257 IDIRDVCFAYPSR-PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~-~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
|+++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|+++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999988654 23 6789
Q ss_pred E-EEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 G-AVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~-~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+ ||||+|.+ ..|++||+.++.. ....++ +.+.++.+ |++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~---------~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDL---------FLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHH---------HHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHH---------HHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999987532 122222 23445555 666 6778889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cC-EEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-AD-MIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d-~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 99999999999865 99 999999999999999998864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=382.76 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=175.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|+++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 24699999999999999999999999999999999999999999998 36789
Q ss_pred eEEccccccc-cccHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLLF-SCSIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~LF-~gTIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+||||+|.+| ..|++||+.++.. ...++++.++++.+++.++..+ ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999887 6799999987531 1113568888999988765433 2457999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|+|||||||||+||+.+.+.+.+.|++... ..++|||+|||+++.+.. ||+|++|++|+ ++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ--------SQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH--------TSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999999987641 214569999999999865 99999999999 99
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|++++++++
T Consensus 209 ~g~~~~~~~~ 218 (253)
T 2nq2_C 209 FGETRNILTS 218 (253)
T ss_dssp EEEHHHHCCH
T ss_pred cCCHHHHhCc
Confidence 9999999753
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=379.34 Aligned_cols=204 Identities=27% Similarity=0.445 Sum_probs=173.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4689
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 336 GAVSQEPSLF-TGSLMDNIKVGNMD-------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 336 ~~v~Q~~~l~-~~ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+||||++.++ ..|++||+.++... ...+. . ..+.+.++.+ |++......+.+||||||||++||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-Y-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH-H-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHH
Confidence 9999999887 56999999986421 11111 1 1122345554 555566778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||++++|++|+ ++.|+++++...
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 99999999999999999999999999999998874 3 8999999999999865 99999999999 999999998653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=364.81 Aligned_cols=194 Identities=20% Similarity=0.374 Sum_probs=165.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999875 257889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM----DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+||||+|.+|.. |++||+.++.. ....+++ .+.++.+ |++.. ++++.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~---------~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI---------MDALESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH---------HHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH---------HHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 1112222 2334555 56666 788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i 471 (1139)
+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+++ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47999999999999987 67765 555665
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=365.98 Aligned_cols=195 Identities=21% Similarity=0.389 Sum_probs=166.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred eEEccccccccc-cHHHHhccCCC----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+||||+|.+|.+ |++||+.++.. ...++++.++++..++.++ ...+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987421 1236678888888876533 233568999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
+++|++||||||||+||+.+...+.+.|++.. ++++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~---------~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL---------KEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH---------HHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998764 223469999999999988 56655 556766
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=378.63 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=119.4
Q ss_pred CCccccceeE-EecCCCEEEEECCCCCcHHHHHHH--HHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 048639 271 DQLILKGFSL-SIPAGKMVALVGSSGCGKSTVISL--VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 271 ~~~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~--l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 347 (1139)
+.++|++|+| .+++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+||++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3569999999 999999999999999999999999 7899999999999999873 222334567899999987531
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA-- 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~-- 425 (1139)
+|+.+...... ++..+++...++.+.+. +....|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~-----------~~~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIE-----------RINYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHH-----------HHHHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHH-----------HHHHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12221110000 00000000111111111 112245555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHc-CCCeEEEEecCccch---------hc-cCEEEEEeCcEE
Q 048639 426 ---LDSESEKLVQEALERAM-QGRTVILIAHRMSTI---------VN-ADMIAVVEDGQV 471 (1139)
Q Consensus 426 ---LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~~-~d~i~~l~~G~i 471 (1139)
+|+...+.+.+.++.+. .|+|+|++||+++.+ .. ||+|++|++|++
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 58888889998888764 489999999999884 45 999999998763
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=350.80 Aligned_cols=233 Identities=17% Similarity=0.237 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCc
Q 048639 822 FRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEV 901 (1139)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~ 901 (1139)
.+...+++.+... ..++..+...+..+..+..+.+|+.++++.+++..... . ..+...+.|+++||+|+|+ .
T Consensus 42 ~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~----~ 113 (305)
T 2v9p_A 42 DSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF----I 113 (305)
T ss_dssp CHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH----H
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC----h
Confidence 3344333333333 46778888888899999999999999987654432111 1 1112235699999999995 4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH-
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN- 980 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre- 980 (1139)
++|+++||+|++||++|||||||||||||+++|+|++ +|+| +++++|+|.+|.+|+++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHH
Confidence 6999999999999999999999999999999999999 7999 35789999999999998
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~-lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
||.++ ++.++ . ++++++. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+
T Consensus 173 ni~~~-~~~~~-~---------~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 173 RAALV-DDATH-A---------CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp SCEEE-EEECH-H---------HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred hhccC-ccccH-H---------HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 99986 45554 2 3456666 888988 67899999999 999999999999 99999999
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
++.|+ . ++||++++..||+| ||++|+|++.|+|++| ++.|++++..+.
T Consensus 229 ~~~i~------~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 229 EDRYL------Y-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp CGGGG------G-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred HHHHH------H-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 88763 1 28999999999999 9999999999999999 478999987553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=346.64 Aligned_cols=201 Identities=23% Similarity=0.350 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999953 36999999999999999999999999999999999999999999762 369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+|+||++.+ ++.|+.||+..... ... . ....+.+.++.+ |+.........+||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~----~~~-~--~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDS----SKL-N--SNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHH----HHH-H--CHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhc----cCC-C--HHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 46699999875310 000 0 011122334444 4445567778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...|++++++.
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999998874 58999999999999876 999999986 88888999998864
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.41 Aligned_cols=239 Identities=18% Similarity=0.258 Sum_probs=192.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECC
Q 048639 188 TAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYP 267 (1139)
Q Consensus 188 ~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~ 267 (1139)
..+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++..... . ......+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~-~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE-G-SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS-C-CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-C-cccccCCeEEEEEEEEEcC
Confidence 3445556777777766555 47888899999999999999999999997644321111 1 1111223589999999996
Q ss_pred CCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 048639 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 268 ~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 347 (1139)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++++|.+
T Consensus 113 ----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 113 ----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLA 167 (305)
T ss_dssp ----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGG
T ss_pred ----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccc
Confidence 36999999999999999999999999999999999999 8988 4678999999999
Q ss_pred cHHH-HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 048639 348 SLMD-NIKVGNMDADDEQIYNASMMANAHSFISQ-LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425 (1139)
Q Consensus 348 ti~~-ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~ 425 (1139)
|+++ ||.++ ++.++ .++++++. +|+|++ |.+|||||||| |||++++|+||| ||+
T Consensus 168 ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 168 SLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred cHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 9998 99987 33332 23467777 898876 78999999999 999999999999 999
Q ss_pred CCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 426 LDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 426 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||+.++..+.. +|||++.+..||+| +|++|++++.|+++++ .+.|++++..+.
T Consensus 224 LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 224 IDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp SCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred CCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 99999887752 29999999899999 9999999999999999 678888876544
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=343.93 Aligned_cols=201 Identities=23% Similarity=0.346 Sum_probs=167.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+||||++.. ++.||.||+..... ... .....+.+.++.+ |+.........+||||||||++|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~----~~~---~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDA----SKL---NSNFYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHH----HHH---TCHHHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhc----cCC---CHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 45699998864200 000 0011122344444 4555667788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999998874 48999999999999976 999999996 78888999988864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=338.20 Aligned_cols=202 Identities=19% Similarity=0.264 Sum_probs=166.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ..
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999953 368888999999999999999999999999999999999999999876 36
Q ss_pred eEEEecCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSL-FTGSLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l-~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|+||++.. +..|++||+.+..... ...+ .+.+.++.+ |+.......+.+||||||||++|||||+
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~--------~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSW--------FFEEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH--------HHHHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHH--------HHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 8999999865 4679999998643211 1110 012233333 4555567788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
.+|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...+++.++..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998874 48999999999999976 999999986 56666777766543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=354.93 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=155.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999742 256999999999999999999999999999999999999999999999862 147
Q ss_pred EEEecCCCC-----CcccHHHHH---------------------------------------------------------
Q 048639 336 GAVSQEPSL-----FTGSLMDNI--------------------------------------------------------- 353 (1139)
Q Consensus 336 ~~v~Q~~~l-----~~~ti~~ni--------------------------------------------------------- 353 (1139)
+|++|++.. .+.|+++++
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 123444443
Q ss_pred ---------hcCCC---CCC--------HH-------HHH------HHH--------HHhcHHHHHHhCCCCCCcc--cc
Q 048639 354 ---------KVGNM---DAD--------DE-------QIY------NAS--------MMANAHSFISQLPDQYSTE--LG 390 (1139)
Q Consensus 354 ---------~~g~~---~~~--------~~-------~~~------~~~--------~~~~~~~~i~~l~~g~~t~--i~ 390 (1139)
.++.. ..+ .+ ++. ++. ....+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 33210 000 00 000 000 011234456665 55543 35
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCc
Q 048639 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDG 469 (1139)
Q Consensus 391 ~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G 469 (1139)
..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 667899999999999999999999999999999999999999999988765 6799999999999875 9999999999
Q ss_pred EEEEecC
Q 048639 470 QVTETGT 476 (1139)
Q Consensus 470 ~i~~~g~ 476 (1139)
+++..|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-32 Score=328.76 Aligned_cols=198 Identities=26% Similarity=0.395 Sum_probs=162.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-----CEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAG-----KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g-----~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678888642 35899999999999 7899999999999999999999999999972 11 246
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPS-LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~-l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|+||++. .|+.|+++|+...... ...+... +.++.+ |+.........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~---------~~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQT---------DVVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHH---------HTHHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHH---------HHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 4678999998643211 1222111 223333 3445566788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 483 (1139)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999976 999999996 899999999999875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-32 Score=339.14 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=139.6
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHH---------------------HHHhccccCC-------ccEEEECCccc
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVL---------------------ALLLRFYDPN-------EGIILIDGKGI 952 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di 952 (1139)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8888888888 55667777665
Q ss_pred CCCChHHHhhhceEEccccccc--------------------cccHHHHhccCCC-cCC--HHH-----H------HHHH
Q 048639 953 KEYNLRRLRSQIGLVQQEPLLF--------------------SCSIRNNICYGNE-AAS--EAE-----I------VEVS 998 (1139)
Q Consensus 953 ~~~~l~~lR~~i~~V~Qdp~LF--------------------~gTIreNL~~~~~-~~s--d~e-----i------~~al 998 (1139)
... .|+.+++|+|.+.++ ..|++||+.++.. ... +.+ + .+.+
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 345677777765432 4589999987421 000 011 1 1123
Q ss_pred HHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccCCCHHHHHHHHHHHHhhCCCCCC
Q 048639 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSALDAESERVIVSALEALNPKSSS 1076 (1139)
Q Consensus 999 ~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~ 1076 (1139)
+.+++.+. -++.+ ...||||||||++|||||+.+|+ |||||||||+||+.+...+.+.|+++.
T Consensus 187 ~~~gL~~~------~~~~~----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~----- 251 (670)
T 3ux8_A 187 QNVGLDYL------TLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR----- 251 (670)
T ss_dssp HHTTCTTC------CTTCB----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-----
T ss_pred HHcCCchh------hhcCC----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH-----
Confidence 34443221 12333 35799999999999999999988 999999999999999999999999764
Q ss_pred ccccCCCeEEEEEecCchhhhcCCEEEEE------eCCEEEEecChhHHhhccCChHHH
Q 048639 1077 CGELASRTTQITVAHRLATVINSDVIVVM------DKGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1077 ~~~~~~~tTvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
..++|||+|+|+++.+..||||++| ++|++++.|+++++.+++...+..
T Consensus 252 ----~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~ 306 (670)
T 3ux8_A 252 ----DLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ 306 (670)
T ss_dssp ----HTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHH
T ss_pred ----HcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHH
Confidence 2345699999999988889999999 899999999999999765444443
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-30 Score=318.93 Aligned_cols=209 Identities=30% Similarity=0.435 Sum_probs=153.7
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHH---------HHHHhccCCC------cc------EEEECCccCCCCC---H
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVI---------SLVARFYDPS------NG------DILIDSLNIKDLD---L 328 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll---------~~l~g~~~~~------~G------~i~~~g~~~~~~~---~ 328 (1139)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .+.++..++.... +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3444433332 22 3555555543211 0
Q ss_pred H-------HH-------------------------------hcceEEEecCCCCCcc-----------------------
Q 048639 329 K-------SL-------------------------------RKNIGAVSQEPSLFTG----------------------- 347 (1139)
Q Consensus 329 ~-------~~-------------------------------~~~i~~v~Q~~~l~~~----------------------- 347 (1139)
. .+ .+..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 1345788887765532
Q ss_pred ----------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC---
Q 048639 348 ----------SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP--- 414 (1139)
Q Consensus 348 ----------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~--- 414 (1139)
|+.|++.|.... .. .....+.+..+.-++ ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---~~------~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---PS------IKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---HH------HHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---hh------HHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 444444443211 00 112234456663332 3578999999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE------eCcEEEEecChhhhhccchHH
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFY 487 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~ 487 (1139)
+||||||||++||+.+.+.+++.|+++. +|+|||+|||+++.+..||+|++| ++|+|+++|+|+++++..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998874 589999999999999889999999 899999999999998876555
Q ss_pred HHHH
Q 048639 488 NRLF 491 (1139)
Q Consensus 488 ~~~~ 491 (1139)
...+
T Consensus 908 t~~~ 911 (916)
T 3pih_A 908 TGRF 911 (916)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-29 Score=306.38 Aligned_cols=211 Identities=27% Similarity=0.371 Sum_probs=158.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHH-hcc-------CCCcc-------------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-RFY-------DPSNG------------- 314 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~-g~~-------~~~~G------------- 314 (1139)
.++++|++. ..|+||||+|++|++++|+|+||||||||++.|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 2799999999999999999999999999999864 221 12233
Q ss_pred EEEECCccCCCC---CHH-------HH---------hcceEEEecCCCCC------------------------------
Q 048639 315 DILIDSLNIKDL---DLK-------SL---------RKNIGAVSQEPSLF------------------------------ 345 (1139)
Q Consensus 315 ~i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~------------------------------ 345 (1139)
.|.+|+.++... ++. .+ .+.+||++|...+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 378888887432 111 11 13468888853221
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChH
Q 048639 346 -------------------------TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGG 399 (1139)
Q Consensus 346 -------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgG 399 (1139)
..|+.||+.+... . ..+. ...+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~------~~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIK------RKLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHH------HHHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHH------HHHHHHHHc--CCCcccccCchhhCCHH
Confidence 1144455544321 1 1111 123456666 5555 578889999999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE------eCc
Q 048639 400 QKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV------EDG 469 (1139)
Q Consensus 400 qkqRi~lARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l------~~G 469 (1139)
|||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|||+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998874 589999999999998789999999 789
Q ss_pred EEEEecChhhhhccch
Q 048639 470 QVTETGTHHSLLQTSD 485 (1139)
Q Consensus 470 ~i~~~g~~~~l~~~~~ 485 (1139)
+|+..|+++++.+...
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999976543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=305.79 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=158.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHH-HHhcc-------CC---------------
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL-VARFY-------DP--------------- 311 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~-l~g~~-------~~--------------- 311 (1139)
..++++|+++ .+|+||||+|++||+++|+|+||||||||++. |.|.+ +|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 76554 23
Q ss_pred ---Ccc-------EEEECCccCCCCCH----------HHHhcce---------EEEecC---------------------
Q 048639 312 ---SNG-------DILIDSLNIKDLDL----------KSLRKNI---------GAVSQE--------------------- 341 (1139)
Q Consensus 312 ---~~G-------~i~~~g~~~~~~~~----------~~~~~~i---------~~v~Q~--------------------- 341 (1139)
.+| .|.++|.++...+. +.+|+.+ ||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68899988753321 2233222 232221
Q ss_pred -CCCC-------------------------cccHHHHHhcCCCCCCHHHHHH---HHHHhcHHHHHHhCCCCCCc-cccc
Q 048639 342 -PSLF-------------------------TGSLMDNIKVGNMDADDEQIYN---ASMMANAHSFISQLPDQYST-ELGQ 391 (1139)
Q Consensus 342 -~~l~-------------------------~~ti~~ni~~g~~~~~~~~~~~---~~~~~~~~~~i~~l~~g~~t-~i~~ 391 (1139)
-.++ ..+|.||+.+.. .+.+.- ......+.+.++.+ |+.. .++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv----~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV----DEAHDFFADESAIFRALDTLREV--GLGYLRLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH----HHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH----HHHHHHhhcchHHHHHHHHHHHc--CCCcccccC
Confidence 1111 125555554321 000000 00011234566776 4444 4688
Q ss_pred cCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE-
Q 048639 392 RGVQLSGGQKQRIAIARAIVKN---PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV- 466 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~~~---~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l- 466 (1139)
.+.+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+..||+|++|
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 8999999999999999999996 79999999999999999999999998874 589999999999999779999999
Q ss_pred -----eCcEEEEecChhhhhccc
Q 048639 467 -----EDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 467 -----~~G~i~~~g~~~~l~~~~ 484 (1139)
++|+|++.|+++++.+..
T Consensus 807 p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 807 PGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp SSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCc
Confidence 799999999999987643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-32 Score=317.52 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=154.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-E-EEECCcccCCCChHHHh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-I-ILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~-I~idG~di~~~~l~~lR 961 (1139)
+.++++||+++|+ ++||++++||+++|+||||||||||+++|+|++.|++| + |.+|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4578888888882 69999999999999999999999999999999999999 9 99998 1 37
Q ss_pred hhceEEcccccccc----ccHHHHhccCCCc----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 SQIGLVQQEPLLFS----CSIRNNICYGNEA----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~----gTIreNL~~~~~~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+++++|||++.+|. .|+++|+ ++... ..++++.++++.+| ++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHH
Confidence 88999999996653 4899999 65321 01122223333333 333332 568999999999
Q ss_pred HHHHH--hcCCCCE----EEeec-cccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch------hhhc-C
Q 048639 1034 AIART--LLKRPAI----MLLDE-ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA------TVIN-S 1099 (1139)
Q Consensus 1034 alARA--Llr~p~I----LlLDE-aTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~------ti~~-~ 1099 (1139)
+|||| |+.+|++ ||||| ||++||+. .+.+.+.+++. +. |+|+|+|+.+ .+.. |
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~-----------~~-tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL-----------NV-NIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT-----------TC-CEEEEECCSSCTHHHHHHHHHH
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh-----------CC-CEEEEEccCchhhhHHHHHHhc
Confidence 99999 9999999 99999 99999999 77777777652 33 4999999987 4444 9
Q ss_pred CE-----EEEEe-CCEEEEecChhHHhh
Q 048639 1100 DV-----IVVMD-KGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1100 Dr-----I~vl~-~G~ive~G~~~eLl~ 1121 (1139)
|| |++|+ +|+|+ .|+++++.+
T Consensus 312 dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp HHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred ccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999 99999 999998854
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-28 Score=289.74 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=150.2
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--------------------------------------CCcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--------------------------------------PNEG 943 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--------------------------------------p~~G 943 (1139)
.+++++||++++| +++|+|+||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999966553 4578
Q ss_pred EEEECCcccCCCChHHHhhh-ceEEccccccccccHHHHhccCCCcCC--------------------------------
Q 048639 944 IILIDGKGIKEYNLRRLRSQ-IGLVQQEPLLFSCSIRNNICYGNEAAS-------------------------------- 990 (1139)
Q Consensus 944 ~I~idG~di~~~~l~~lR~~-i~~V~Qdp~LF~gTIreNL~~~~~~~s-------------------------------- 990 (1139)
++.+||.+++..++..+++. +++++|++.++-.+..++..+.+....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999988778888777 799999998887665544332211110
Q ss_pred ----------------------------------HHHHHHHHHHcCchHH--Hhh-------CCCCccc---cccCCCCC
Q 048639 991 ----------------------------------EAEIVEVSKKANIHDF--ISS-------LPDGYDT---VVGEKGCQ 1024 (1139)
Q Consensus 991 ----------------------------------d~ei~~al~~~~l~~~--i~~-------lp~gldt---~v~e~G~~ 1024 (1139)
.+++.+.++..++.+. ... -+.|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0112222222222110 000 0112222 33444433
Q ss_pred --------CChHHHHHHHHHHHhcCCC--CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1025 --------LSGGQKQRIAIARTLLKRP--AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1025 --------LSgGQrQrlalARALlr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
||||||||++|||+|+.+| +||||||||++||+.+.+.|.+.|+++. ++ +|||+|||+++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~---------~~-~~vi~itH~~~ 357 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---------DT-RQVLVVTHLAQ 357 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT---------TT-SEEEEECSCHH
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---------CC-CEEEEEeCcHH
Confidence 7999999999999999999 9999999999999999999999999874 33 45999999999
Q ss_pred hhhcCCEEEEE----eCCEEEEe
Q 048639 1095 TVINSDVIVVM----DKGEVVEM 1113 (1139)
Q Consensus 1095 ti~~~DrI~vl----~~G~ive~ 1113 (1139)
.+..||+|+|| ++|+++..
T Consensus 358 ~~~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 358 IAARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HHTTCSEEEEEEEEEETTEEEEE
T ss_pred HHhhcCeEEEEEEeccCCceEEE
Confidence 88889999999 99998765
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=284.65 Aligned_cols=200 Identities=19% Similarity=0.295 Sum_probs=149.4
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC--------------------------------------CCccE
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--------------------------------------PSNGD 315 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--------------------------------------~~~G~ 315 (1139)
++++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 45788
Q ss_pred EEECCccCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHhcCCCCCCH--------------------------------
Q 048639 316 ILIDSLNIKDLDLKSLRKN-IGAVSQEPSLFTGSLMDNIKVGNMDADD-------------------------------- 362 (1139)
Q Consensus 316 i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-------------------------------- 362 (1139)
+.+||.++...+...+... +++++|++.++..+..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876666666665 8999999987765554443332111100
Q ss_pred ------------HHHHHHH------H-------HhcHHHHHHhC--CC----------------CCCc---cccccCCC-
Q 048639 363 ------------EQIYNAS------M-------MANAHSFISQL--PD----------------QYST---ELGQRGVQ- 395 (1139)
Q Consensus 363 ------------~~~~~~~------~-------~~~~~~~i~~l--~~----------------g~~t---~i~~~g~~- 395 (1139)
+++.+.+ + ...+.+.+..+ |. |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 0000000 0 00111223333 11 1111 22333333
Q ss_pred -------CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEE
Q 048639 396 -------LSGGQKQRIAIARAIVKNP--PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVV 466 (1139)
Q Consensus 396 -------LSgGqkqRi~lARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l 466 (1139)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988889999999999888789999999
Q ss_pred ----eCcEEEEe
Q 048639 467 ----EDGQVTET 474 (1139)
Q Consensus 467 ----~~G~i~~~ 474 (1139)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998765
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-30 Score=301.42 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=148.6
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-E-EEECCccCCCCCHHHHhcceEEEecCCCCCc----ccH
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-D-ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT----GSL 349 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~ti 349 (1139)
.++||++++|++++|+||||||||||+++|+|+++|++| + |.+||. .++.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 999981 3678999999986543 489
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-C
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA--IVKNPPI----LLLDE-A 422 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa--l~~~~~i----lllDE-p 422 (1139)
+||+ ++........ ....+.+.++.+ |++.... +.+||||||||++|||| |+.+|++ ||||| |
T Consensus 200 ~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 200 QLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 9999 7642100000 000011122222 4444333 77999999999999999 9999999 99999 9
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc------chhc-cCE-----EEEEe-CcEEEEecChhhhhcc-chHHH
Q 048639 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMS------TIVN-ADM-----IAVVE-DGQVTETGTHHSLLQT-SDFYN 488 (1139)
Q Consensus 423 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~------~~~~-~d~-----i~~l~-~G~i~~~g~~~~l~~~-~~~~~ 488 (1139)
|++||+. ...+.+.+++. ++|+|+|||+.+ .+.. ||+ |++|+ +|+++ .|+++++.+. ....+
T Consensus 270 ts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~ 345 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIR 345 (460)
T ss_dssp GGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHH
T ss_pred ccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHH
Confidence 9999999 66667666654 789999999988 5544 999 99999 99999 9999887542 23344
Q ss_pred HHH
Q 048639 489 RLF 491 (1139)
Q Consensus 489 ~~~ 491 (1139)
.++
T Consensus 346 ~~f 348 (460)
T 2npi_A 346 EYF 348 (460)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=256.61 Aligned_cols=195 Identities=18% Similarity=0.278 Sum_probs=140.6
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc----------------------------------------------
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY---------------------------------------------- 309 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~---------------------------------------------- 309 (1139)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999998443
Q ss_pred ----CCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCC---------------CCHHHHHHHH
Q 048639 310 ----DPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMD---------------ADDEQIYNAS 369 (1139)
Q Consensus 310 ----~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~---------------~~~~~~~~~~ 369 (1139)
.+.+|.+.+||.++...+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578899998875545566667889889988766 67999988754210 0111222221
Q ss_pred HHhc------------H-HHHHHhCCCCCCccc------cccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q 048639 370 MMAN------------A-HSFISQLPDQYSTEL------GQRGVQLSGGQKQRIAIARAIV----KNPPILLLDEATSAL 426 (1139)
Q Consensus 370 ~~~~------------~-~~~i~~l~~g~~t~i------~~~g~~LSgGqkqRi~lARal~----~~~~illlDEpts~L 426 (1139)
.... . .+....++.|+++.+ ...+..||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1100 0 001123444555433 2346799999999999999996 789999999999999
Q ss_pred CHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEE--EEEeCcEE
Q 048639 427 DSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMI--AVVEDGQV 471 (1139)
Q Consensus 427 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i--~~l~~G~i 471 (1139)
|+.....+.+.++++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887788999999998777779987 88888854
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-25 Score=253.68 Aligned_cols=202 Identities=21% Similarity=0.266 Sum_probs=142.3
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc------------------------------------------------
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRF------------------------------------------------ 937 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl------------------------------------------------ 937 (1139)
++++++.+| .++|+|+||||||||+.+|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 9999999999999999999843
Q ss_pred --ccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcC----------------CHHHHHHHH
Q 048639 938 --YDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA----------------SEAEIVEVS 998 (1139)
Q Consensus 938 --~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~----------------sd~ei~~al 998 (1139)
+.+.+|.+.+||.+++.-++..+...+++.||+..++ .|++.+|+... |.. +.+++.+.+
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344679999999886666677777899999998765 89999998653 210 001122221
Q ss_pred HHc------------Cch-HHHhhCCCCcccccc------CCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccccCC
Q 048639 999 KKA------------NIH-DFISSLPDGYDTVVG------EKGCQLSGGQKQRIAIARTLL----KRPAIMLLDEATSAL 1055 (1139)
Q Consensus 999 ~~~------------~l~-~~i~~lp~gldt~v~------e~G~~LSgGQrQrlalARALl----r~p~ILlLDEaTS~L 1055 (1139)
... .+. .....++.|+++.++ .....||||||||++|||||. ++|+|||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 011224456655433 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE--EEEeCCEE-EEecChhHH
Q 048639 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI--VVMDKGEV-VEMGSHSTL 1119 (1139)
Q Consensus 1056 D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI--~vl~~G~i-ve~G~~~eL 1119 (1139)
|+.+.+.+.+.|++.. . ++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 255 D~~~~~~l~~~l~~~~---------~-~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENS---------K-HTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHT---------T-TSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhc---------C-CCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999998763 2 34699999998877789987 88888865 344444443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-27 Score=252.13 Aligned_cols=158 Identities=12% Similarity=0.130 Sum_probs=101.8
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...++++++|+||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 222221 1223567899999997 56
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh
Q 048639 352 NI-KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 352 ni-~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~ 430 (1139)
|+ .++.+. ...+........+.+.++. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 66 342100 0000000001112223322 2 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcE
Q 048639 431 EKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 431 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
+..+.+.|+++.+++|+| +||+++.+.. +...++|.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 888888888774578999 9999886543 33445663
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.1e-27 Score=246.52 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=100.6
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
.++|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++||||+| ++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589985 89999999999999999999999999 99999994 333331 2234678899999998 66
Q ss_pred Hh-ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NI-CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL-~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
|+ .++.+.. +.+........+.+.++. | + |||||++|||||+.+|+|||||||||+ +
T Consensus 78 nl~~~~~~~~--~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPLH--DALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHHH--HHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHHH--HHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 3321100 000000000011111211 1 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
...+.+.|++. .+++|+| |||+++.+. ++...++|..
T Consensus 136 ~~~l~~~l~~l----------~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 136 PAQMKMFLTRL----------GFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHHTTB----------CTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHHh----------cCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 88999999864 2245588 999988654 3445566643
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-27 Score=250.84 Aligned_cols=166 Identities=17% Similarity=0.257 Sum_probs=121.4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-HHHhhhceEEcccccccc-----
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-RRLRSQIGLVQQEPLLFS----- 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l-~~lR~~i~~V~Qdp~LF~----- 975 (1139)
..|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 235778999999986664
Q ss_pred ------ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH-----HHHhcCCCC
Q 048639 976 ------CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI-----ARTLLKRPA 1044 (1139)
Q Consensus 976 ------gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal-----ARALlr~p~ 1044 (1139)
+++++| .++. .++++.++++..... .++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 344445 3332 345677777654321 111 4699999999999 899999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
+++|||||+++|.++++.|++.+.+.. .+ .| ++| +..||+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~---------~~-~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLN---------IE-LH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHH---------HH-HH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH---------HH-HH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999998653 12 22 677 577999988865
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-23 Score=240.06 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=77.0
Q ss_pred cccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCE
Q 048639 390 GQRGVQLSGGQKQRIAIARAIV------KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 390 ~~~g~~LSgGqkqRi~lARal~------~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~ 462 (1139)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.++++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567899999999999999999 7999999999999999999999999998875 48999999999998777999
Q ss_pred EEEEeCcEEEE
Q 048639 463 IAVVEDGQVTE 473 (1139)
Q Consensus 463 i~~l~~G~i~~ 473 (1139)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999974
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-25 Score=225.37 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=106.2
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccc--cccccHHHHhc
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL--LFSCSIRNNIC 983 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~--LF~gTIreNL~ 983 (1139)
||||++++||.++|+||||||||||++++++- ... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 68999999999999999999999999996532 111 2333444 67888862 33333333321
Q ss_pred cCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHH---
Q 048639 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE--- 1060 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te--- 1060 (1139)
. ...... ..|+.+.+... ...|+|||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~---------~~~~~~-----------~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------IVSKRL-----------QLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------HHHHHH-----------HTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------HHHHHH-----------hCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111111 12444443332 34699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE
Q 048639 1061 -------------RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102 (1139)
Q Consensus 1061 -------------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI 1102 (1139)
+.+++.|++.. .+++|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~---------~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQ---------REGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHH---------HHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHH---------hcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766543 2244599999999999887775
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.1e-24 Score=243.53 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCChHHHHHHHHHHHhc------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1021 KGCQLSGGQKQRIAIARTLL------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1021 ~G~~LSgGQrQrlalARALl------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
...+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|++.. ..+.|||+|+|+++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~---------~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE---------RLNKVIVFITHDRE 346 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG---------GSSSEEEEEESCHH
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------hCCCEEEEEecchH
Confidence 34579999999999999999 7999999999999999999999999999864 33456999999999
Q ss_pred hhhcCCEEEEEeCCEEEE
Q 048639 1095 TVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1095 ti~~~DrI~vl~~G~ive 1112 (1139)
.+..||+|++|++|++++
T Consensus 347 ~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 347 FSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHTTCSCEEEEETTEEC-
T ss_pred HHHhCCEEEEEECCEEEe
Confidence 988899999999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-25 Score=225.29 Aligned_cols=147 Identities=13% Similarity=0.156 Sum_probs=109.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY 366 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 366 (1139)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999985 556665543322113567899999987 3344442 1100
Q ss_pred HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 048639 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA-----IVKNPPILLLDE--ATSALDSESEKLVQEALE 439 (1139)
Q Consensus 367 ~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa-----l~~~~~illlDE--pts~LD~~~~~~i~~~l~ 439 (1139)
.+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 01 1145678888999999999999996 999999999999 999999999999988886
Q ss_pred HHcCCCeEEEEec---Cccchhc-cCEEEEEeCcEEEE
Q 048639 440 RAMQGRTVILIAH---RMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 440 ~~~~~~tvi~itH---~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
+ .+.|+|+++| +.+.+.. ||+ .+|++.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4677999986 6677765 777 5667665
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-24 Score=223.60 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=105.4
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC--CCcccHHHHHh
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIK 354 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ti~~ni~ 354 (1139)
||||++++||+++|+||||||||||++++.+- ...+ +.+.++ ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 68999999999999999999999999996532 1112 122233 67778763 12222222221
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh----
Q 048639 355 VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES---- 430 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~---- 430 (1139)
... ...+..|+.+.+. .....|||||||++||||+..+|++++|||||++||+.+
T Consensus 64 ------------~~~--------~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIV--------SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHH--------HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHH--------HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 000 1111225544443 334569999999999999999999999999999999994
Q ss_pred ------------HHHHHHHHHHHc-CCCeEEEEecCccchhccCEE
Q 048639 431 ------------EKLVQEALERAM-QGRTVILIAHRMSTIVNADMI 463 (1139)
Q Consensus 431 ------------~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 463 (1139)
...+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777766543 489999999999998877664
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-25 Score=254.44 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=119.0
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
|++++| | .++++++||.|++|+.++|+||||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666766 6 248999999999999999999999999999999999999999999999976 33333344445544
Q ss_pred ccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 048639 968 QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047 (1139)
Q Consensus 968 ~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILl 1047 (1139)
+| |||+||++|||||.++|++|+
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 30 799999999999999999999
Q ss_pred eeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhH
Q 048639 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1048 LDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 1118 (1139)
|||||+ .+ +++.|++.. .+++|+|+++|+++....||||++|++|+....+-+.+
T Consensus 246 ldE~~~---~e----~~~~l~~~~---------~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 246 LGELRS---SE----AYDFYNVLC---------SGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp ECCCCS---TH----HHHHHHHHH---------TTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred EcCCCh---HH----HHHHHHHHh---------cCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 999998 22 445555443 34445999999999888899999999986433344443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-24 Score=219.41 Aligned_cols=148 Identities=13% Similarity=0.189 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. + ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~--~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S--SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E--ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H--hh------
Confidence 689999999999999999999995 667887765443225678999999987 3334431 1 00
Q ss_pred HHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeec--cccCCCHHHHHHHHHHHH
Q 048639 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART-----LLKRPAIMLLDE--ATSALDAESERVIVSALE 1068 (1139)
Q Consensus 996 ~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA-----Llr~p~ILlLDE--aTS~LD~~te~~I~~~l~ 1068 (1139)
+ .+ -+..++..+.+||||||||++|||| ++.+|++|+||| ||+++|+.+.+.+.+.++
T Consensus 63 ------~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ------F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ------c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 00 0134556667899999999999996 999999999999 999999999999999997
Q ss_pred hhCCCCCCccccCCCeEEEEEec---Cchhhhc-CCEEEEEeCCEEEEe
Q 048639 1069 ALNPKSSSCGELASRTTQITVAH---RLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1069 ~~~~~~~~~~~~~~~tTvI~IaH---rl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
+ .++|+|+++| +.+.+.. ||| .+|+|++.
T Consensus 128 ~------------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 128 D------------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp C------------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred c------------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 3 2345788886 6666655 776 66777764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-26 Score=242.96 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=117.4
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-HHHhcceEEEecCCCCCcc----
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRKNIGAVSQEPSLFTG---- 347 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~---- 347 (1139)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 877644322 2346789999999876643
Q ss_pred -------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH-----HHHHccCCC
Q 048639 348 -------SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI-----ARAIVKNPP 415 (1139)
Q Consensus 348 -------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l-----ARal~~~~~ 415 (1139)
++.+| .+|.+ .+++.++ ++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~---------l~~---~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKA---------KEQ---NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHH---------HHT---TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHH---------HhC---CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 33334 23322 2222222 222 1112222 6899999999999 899999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
+++|||||+++|.+++..+.+.+....+++| ++| +..||.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999987766666 677 466999888764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-24 Score=251.29 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=137.3
Q ss_pred ccccceeEEEeCCc--------------------EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 902 TVLNNFSLQIEPGL--------------------KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge--------------------~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
.+|++|||+|++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 1
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH--HHHHHHHHHHh
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG--QKQRIAIARTL 1039 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG--QrQrlalARAL 1039 (1139)
.++++|++....-|++||+.++.+ ++.+.+.++..++.+. +..+ .||+| ||||++|||||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHH
Confidence 288999986557799999877643 3457778888887542 2222 28999 99999999999
Q ss_pred cC----------CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccc--cCCCeEEEEEecCchh--hhc-CCEEE
Q 048639 1040 LK----------RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE--LASRTTQITVAHRLAT--VIN-SDVIV 1103 (1139)
Q Consensus 1040 lr----------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~--~~~~tTvI~IaHrl~t--i~~-~DrI~ 1103 (1139)
.+ +|++++|||||++||+.+++.+.+.|++...+. -.+ ....+++++.||.++. +.. ||+|.
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~--l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT--FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH--HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH--HHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99 999999999999999999999999888752000 000 0123558888998886 655 77774
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-24 Score=252.38 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=156.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc---ccCCCC----
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYN---- 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~---- 956 (1139)
+.++++||++.|+. +.++|+++ |+|.+||++||+|+||||||||+++|.|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 34699999 999999999999999999999999999999999999999998 565432
Q ss_pred -hHHHhhhceEEccc--cccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 957 -LRRLRSQIGLVQQE--PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 957 -l~~lR~~i~~V~Qd--p~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
...+++.+++++|+ |....-|+.+|+.+. .+.... +......++ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 35688899999995 344466888988653 122111 111111111 2245799999 999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe-----EEEEEecCchhhhcCCEEEEEeCC
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT-----TQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t-----TvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
+|| +++|++ |+++|+.+...+.+.+++.... +...++ ||+++||+++ ...||++++|.+|
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~-----~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG 331 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNG-----IHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDG 331 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCC-----STTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhc-----cCCCCcccceeEEEEeCCCcc-chhhceEEEEeCc
Confidence 999 899998 9999999999999999876410 001142 6999999999 6669999999999
Q ss_pred EEEEecChhHHhh
Q 048639 1109 EVVEMGSHSTLVA 1121 (1139)
Q Consensus 1109 ~ive~G~~~eLl~ 1121 (1139)
+|+..|++.++..
T Consensus 332 ~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 332 HIVLSRRLAEAGH 344 (438)
T ss_dssp EEEECHHHHHTTC
T ss_pred EEEEeCCHHHccC
Confidence 9999999998865
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-24 Score=246.96 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=128.2
Q ss_pred CccccceeEEecCCC--------------------EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 272 QLILKGFSLSIPAGK--------------------MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~--------------------~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
+.+|++|||++++|+ +++|+||||||||||+++|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChH--HHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG--QKQRIAIARA 409 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgG--qkqRi~lARa 409 (1139)
+ .+|++|++...+.|+.||+.++.+... +. +.++.+. +... ..... |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~~---~~---------~~L~~~~--L~~~-~~~~~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNFP---PD---------TYLEKMK--FYEY-DFFII-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSCC---HH---------HHHHHTT--GGGC-SEEEE-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHHH---HH---------HHHHHcC--CCcc-CCeEE-eCCCCccHHHHHHHHH
Confidence 1 288999975446799999887753222 22 2233321 1110 11223 9999 9999999999
Q ss_pred Hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc------C----CCeEEEEecCccc--hhc-cCEE
Q 048639 410 IVK----------NPPILLLDEATSALDSESEKLVQEALERAM------Q----GRTVILIAHRMST--IVN-ADMI 463 (1139)
Q Consensus 410 l~~----------~~~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~~~~--~~~-~d~i 463 (1139)
|.+ +|++++|||||++||+.++..+.+.++++. . ..++++.||.++. ++. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999988888887652 1 2567788998876 554 6665
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-24 Score=249.86 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=154.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc---cCCCC-----
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL---NIKDL----- 326 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~---~~~~~----- 326 (1139)
+.++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 34699999 999999999999999999999999999999999999999998 55432
Q ss_pred CHHHHhcceEEEecC-CCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHH
Q 048639 327 DLKSLRKNIGAVSQE-PSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 327 ~~~~~~~~i~~v~Q~-~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqR 403 (1139)
....+++.++||+|+ ..++ ..|+.+|+.+.. +.. .. .+.+ ..+-+...+||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~------------~~--~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDF------------RD--RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHH------------HT--TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHH------------Hh--CCCCHHHHHHhHHHHHHHH-HH
Confidence 134578899999995 3333 458888887531 111 00 0111 01123467899999 99
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-----CC-----eEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-----GR-----TVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
++|| +.+|++ |++||+.+...+.+.+.++.+ |+ |++++|||++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999987654 54 9999999999 56699999999999999
Q ss_pred ecChhhhh
Q 048639 474 TGTHHSLL 481 (1139)
Q Consensus 474 ~g~~~~l~ 481 (1139)
+|++.++.
T Consensus 336 ~~~~~~~~ 343 (438)
T 2dpy_A 336 SRRLAEAG 343 (438)
T ss_dssp CHHHHHTT
T ss_pred eCCHHHcc
Confidence 99988764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-23 Score=235.12 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=109.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
+++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 79999999999999999999999999999999999999999999998652 22222344455443
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~ 433 (1139)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------------g-------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------------G-------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHcCCC-eEEEEecCccchhccCEEEEEeCcE
Q 048639 434 VQEALERAMQGR-TVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 434 i~~~l~~~~~~~-tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
+.+.++.+..|+ |+|+++|+++....|||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 455666665654 7999999999767799999998875
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=215.31 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.4
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEE
Q 048639 395 QLSGGQKQRIAIARAIV---------KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV 465 (1139)
Q Consensus 395 ~LSgGqkqRi~lARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~ 465 (1139)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCcEEEEecChhhh
Q 048639 466 VEDGQVTETGTHHSL 480 (1139)
Q Consensus 466 l~~G~i~~~g~~~~l 480 (1139)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-22 Score=223.24 Aligned_cols=175 Identities=16% Similarity=0.202 Sum_probs=127.3
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPS-LFT- 346 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~- 346 (1139)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ +.+|+|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876542 1233 457999999998 765
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCC
Q 048639 347 GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATS 424 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts 424 (1139)
.|++||+.++.....+ ...++.+ |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d------------~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS------------EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc------------chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 4899999764210000 0012222 22222334455689 999999999999999 99999 999
Q ss_pred CCCHHhHHHHHHHHHHHcCCCeEEEEec---------Cccchhc-cCEEEEEeCcEE
Q 048639 425 ALDSESEKLVQEALERAMQGRTVILIAH---------RMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 425 ~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~~-~d~i~~l~~G~i 471 (1139)
+||+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 12221 24789999999 2333333 678999998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-23 Score=208.00 Aligned_cols=111 Identities=21% Similarity=0.316 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcccCCCC---hHHHh-hhce----EEccccccccccHHHHhc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEYN---LRRLR-SQIG----LVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~---l~~lR-~~i~----~V~Qdp~LF~gTIreNL~ 983 (1139)
++++|||+||||||||+++|.|+|+|. .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5799 899999988 222
Q ss_pred cCCCcCCHHHHHHHHHHcCchHHHhh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 048639 984 YGNEAASEAEIVEVSKKANIHDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~i~~-lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~IL 1046 (1139)
+ ++++ .+++++++.. +| |+||.++|+ |||||||||+||||++++|+|.
T Consensus 77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 7899999999 99 999999995 9999999999999999999873
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-22 Score=219.62 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCC---H
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDAD---D 362 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~---~ 362 (1139)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4899999999999999999999999999999999887432 345789999999988865 99999999864221 2
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
+.+.+... .++...+ ...||||||||+++|||++. +++||||+++||+... +.++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHH
T ss_pred HHHHHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHH
Confidence 22322222 1222222 23799999999999999886 9999999999999763 2333333
Q ss_pred CCCeEEEEecCccchh
Q 048639 443 QGRTVILIAHRMSTIV 458 (1139)
Q Consensus 443 ~~~tvi~itH~~~~~~ 458 (1139)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999877663
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-23 Score=232.36 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=133.1
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEE-----------------------EeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQ-----------------------IEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~-----------------------I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
..+.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 578887775 8999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccC----CCc-CCHHHHHHHHHHcCchHHHhhCCCC
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG----NEA-ASEAEIVEVSKKANIHDFISSLPDG 1013 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~----~~~-~sd~ei~~al~~~~l~~~i~~lp~g 1013 (1139)
+|..|. +++++|+||+++++.|+++|+.+. .+. ...+.+.+.++..+ .|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CC
Confidence 997663 469999999999988999998753 222 23345555555433 22
Q ss_pred c-cccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecC
Q 048639 1014 Y-DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092 (1139)
Q Consensus 1014 l-dt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHr 1092 (1139)
. +..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ .. +|+|.|.
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-----------D~-~I~V~a~ 227 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-----------DF-SLYVDAR 227 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-----------SE-EEEEEEC
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-----------Cc-EEEEECC
Confidence 2 2333 3699999999999999999999999999999998632 1233322 23 6888888
Q ss_pred chhhhc--CCEEEEEeCCE
Q 048639 1093 LATVIN--SDVIVVMDKGE 1109 (1139)
Q Consensus 1093 l~ti~~--~DrI~vl~~G~ 1109 (1139)
.+.... .+|.+.+.+|+
T Consensus 228 ~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 228 IEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 776532 56666555543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-22 Score=221.38 Aligned_cols=176 Identities=15% Similarity=0.208 Sum_probs=125.8
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEccccc-cc-c
Q 048639 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPL-LF-S 975 (1139)
Q Consensus 904 L~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~-LF-~ 975 (1139)
++++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999987653 2344 457999999987 65 4
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS 1053 (1139)
.|+++|+.++.....+. ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 58999997531100000 01122222111 11222 3488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEec---------Cchhhhc-CCEEEEEeCCEEE
Q 048639 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH---------RLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1054 ~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH---------rl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|+.+.. +.+.+. .+ .|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~~----------~g-~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV----------VG-ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHHH----------TC-CCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHHh----------cC-CCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 233321 23 35999999 3333333 6899999999754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=210.27 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1024 QLSGGQKQRIAIARTLL---------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALl---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+.+.|++. . .|+|++|| ++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----------~--qt~i~~th-~~ 331 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----------P--QAIVTGTE-LA 331 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----------S--EEEEEESS-CC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----------C--cEEEEEEe-cc
Confidence 69999999999999999 899999999999999999999999999863 2 56999999 45
Q ss_pred hhhcCCEEEEEeCCEEEEecChhHHh
Q 048639 1095 TVINSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1095 ti~~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
. .||+|++|++|+|++.|+|+++.
T Consensus 332 ~--~~~~i~~l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 332 P--GAALTLRAQAGRFTPVADEEMQA 355 (359)
T ss_dssp T--TCSEEEEEETTEEEECCCTTTSC
T ss_pred c--cCCEEEEEECCEEEecCCHHHHh
Confidence 4 89999999999999999999873
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-22 Score=227.89 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=113.1
Q ss_pred CCccEEEEeEEEECCCCCCCccccceeEE-----------------------ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLS-----------------------IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~-----------------------i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999993 477877775 8999999999999999999999999999
Q ss_pred CCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCC
Q 048639 310 DPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN----MDADDEQIYNASMMANAHSFISQLPDQY 385 (1139)
Q Consensus 310 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 385 (1139)
+|+.|. .+++||+|++.+++.|++||+.+.. |...+ ...+.+.++.+..|.
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d--------~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYN--------RRALMRFVTSVKSGS 169 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBC--------HHHHHHHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHH--------HHHHHHHHHHhCCCc
Confidence 998663 3699999999999889999997532 21111 111223444443333
Q ss_pred CccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 386 ~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 170 ~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 170 D---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp S---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred c---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 2 223458999999999999999999999999999999986
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-22 Score=216.44 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc-cHHHHhccCCCcC---CH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYGNEAA---SE 991 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~~~---sd 991 (1139)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456789999999988754 9999999875322 12
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+.+.+.++ .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+.+.|.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 33444333 33332221 2599999999999999885 999999999999876 444455542
Q ss_pred CCCCCccccCCCeEEEEEecCchhhh
Q 048639 1072 PKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1072 ~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
. .++|+|.|+.+++.
T Consensus 140 ----------~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 ----------V-VNIIPVIAKADTMT 154 (270)
T ss_dssp ----------T-SEEEEEETTGGGSC
T ss_pred ----------c-CcEEEEEeccccCC
Confidence 2 45999999988764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-21 Score=219.63 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=127.7
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-c
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPS-LFT-G 347 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~-~ 347 (1139)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... +..+ |.+|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999876532 1223 467999999987 665 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~ 425 (1139)
|++||+.++.....+ . ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 899999764210000 0 011222 22222334455688 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHcCCCeEEEEecC---------ccchhc-cCEEEEEeCcE
Q 048639 426 LDSESEKLVQEALERAMQGRTVILIAHR---------MSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 426 LD~~~~~~i~~~l~~~~~~~tvi~itH~---------~~~~~~-~d~i~~l~~G~ 470 (1139)
||+.+... .+.+ ..+.|+|++||. ++.+.. .+.|..+..|+
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99986531 1211 237899999992 333333 67899998886
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=9.9e-22 Score=203.91 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=129.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHH
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAE 993 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~e 993 (1139)
||+++|+||||||||||+++|.|+++ ++| |.+||.++.+++ .+++++++++|+. .++ +.|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 79999999999999999999999999 999 999999986543 5789999999986 443 344432110000
Q ss_pred HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH-HHHH---HhcCCCCEEEeec--cccCCCHHHHHHHHHHH
Q 048639 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI-AIAR---TLLKRPAIMLLDE--ATSALDAESERVIVSAL 1067 (1139)
Q Consensus 994 i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl-alAR---ALlr~p~ILlLDE--aTS~LD~~te~~I~~~l 1067 (1139)
+...+.++++.+..+|+|||+++ +++| |++.+|+|||||| ||...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11123478888889999999998 5566 7899999999999 89889999988888888
Q ss_pred HhhCCCCCCccccCCCeEEE---EEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1068 EALNPKSSSCGELASRTTQI---TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1068 ~~~~~~~~~~~~~~~~tTvI---~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
++. .++++ +|+||.+ ....|||..+++|+|++... ++++..|.++.+
T Consensus 133 ~~~------------~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~ 182 (189)
T 2i3b_A 133 STP------------GTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVT 182 (189)
T ss_dssp HCS------------SCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHH
T ss_pred hCC------------CcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHH
Confidence 732 23342 4559886 45578999999999988643 123455555543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-21 Score=217.89 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=126.2
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEccccc-cc-cc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPL-LF-SC 976 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~-LF-~g 976 (1139)
+.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3478889999999999999999999999999999999999999999987642 2333 567999999987 55 56
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~ 1054 (1139)
|+++|+.++.....+. ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999997542100010 01122222111 11222 3488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEec---------Cchhhhc-CCEEEEEeCCEEE
Q 048639 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAH---------RLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1055 LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH---------rl~ti~~-~DrI~vl~~G~iv 1111 (1139)
+|+.+.. +.+.+. .+ .|+|++|| .++.+.. .+.|..+..|+.+
T Consensus 290 lD~~~~~---~~~~~~----------~g-~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 290 LNMLPQA---REFNEV----------VG-ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGHHHH---HHHHHH----------TC-CCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCHHHHH---HHHHHh----------cC-CeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9998653 233321 13 35999999 2333333 6899999999753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-22 Score=210.78 Aligned_cols=175 Identities=13% Similarity=0.138 Sum_probs=107.9
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLM 350 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~ 350 (1139)
.++++| .++++||+++|+||||||||||+++|+|+++. +.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44443211111111235689999999987754 677
Q ss_pred HHHhc-----CC-C--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH---HHccCCCEEEE
Q 048639 351 DNIKV-----GN-M--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR---AIVKNPPILLL 419 (1139)
Q Consensus 351 ~ni~~-----g~-~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR---al~~~~~illl 419 (1139)
+|+.. ++ . ....+++.+.+... . +-.+ ..++.|.+.++-..++ ||+.+|++++|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~---------~---~~~~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~L 147 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATG---------V---PVLI---EVDLAGARAIKKTMPEAVTVFLAPPSWQDL 147 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHT---------C---CEEE---ECCHHHHHHHHHHCTTSEEEEEECSCHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcC---------C---eEEE---EeCHHHHHHHHHhcCCcEEEEEECCCHHHH
Confidence 76632 10 0 01122222221111 0 0000 0122333333333333 89999999999
Q ss_pred eCCCCCC----CHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEe
Q 048639 420 DEATSAL----DSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVE 467 (1139)
Q Consensus 420 DEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~ 467 (1139)
||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999998 6778888988888774 37899999999999876 99999984
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-21 Score=208.34 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=108.8
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC-hHHHhhhceEEccccccccc-cH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRLRSQIGLVQQEPLLFSC-SI 978 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~lR~~i~~V~Qdp~LF~g-TI 978 (1139)
.++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++...+ ....|+.++|++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 368999 7999999999999999999999999999985 355554 222211 12346789999999987753 55
Q ss_pred HHHhccC----C--C--cCCHHHHHHHHHH----------cCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 979 RNNICYG----N--E--AASEAEIVEVSKK----------ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 979 reNL~~~----~--~--~~sd~ei~~al~~----------~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++|+.+. . . ..+.+++.+.++. +++.++....|. .|| ||+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEE
Confidence 5665321 0 0 1223344443333 333333333332 344 899
Q ss_pred CCCCEEEeeccccCC----CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1041 KRPAIMLLDEATSAL----DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~L----D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
.+|++++|||||+++ |+.+.+.+++.+++.. . ..+.|+|+|+|+++.+.. ||||++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~-------~-~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELA-------A-QGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH-------G-GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-------h-hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 6778888888887763 1 223459999999999876 99999984
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-23 Score=223.54 Aligned_cols=183 Identities=14% Similarity=0.184 Sum_probs=144.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~lR~~i 964 (1139)
++++|+++ + ++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~--~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGL--P-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSC--C-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCC--H-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 44566664 2 4899999 9999999999999999999999999999998 999999999886543 4557
Q ss_pred eEEcc-----ccccccccHHHHhccCCCcC-------CHHHHHHHHHHcCch----------------HHH---------
Q 048639 965 GLVQQ-----EPLLFSCSIRNNICYGNEAA-------SEAEIVEVSKKANIH----------------DFI--------- 1007 (1139)
Q Consensus 965 ~~V~Q-----dp~LF~gTIreNL~~~~~~~-------sd~ei~~al~~~~l~----------------~~i--------- 1007 (1139)
++++| ++..|..+|+.+|... |+. +.+.++.+++.+.-. +.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 88999 6667788899998763 443 566666666543210 111
Q ss_pred ----hhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccccCCCHHH---------HHHHHHHHHhhCC
Q 048639 1008 ----SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI--MLLDEATSALDAES---------ERVIVSALEALNP 1072 (1139)
Q Consensus 1008 ----~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I--LlLDEaTS~LD~~t---------e~~I~~~l~~~~~ 1072 (1139)
..+++++++.|++.+..+|+| ||+++||+++.+|+| +|+||+|+++|... +..++++++...
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~- 228 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK- 228 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH-
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH-
Confidence 124568999999999899999 899999999999999 99999999999873 456888887664
Q ss_pred CCCCccccCCCeEEEEEecCch
Q 048639 1073 KSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1073 ~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
++.| .+.++||++
T Consensus 229 --------~g~t-~~~~a~r~~ 241 (261)
T 2eyu_A 229 --------QGLI-TLEDAMEAS 241 (261)
T ss_dssp --------TTSS-CHHHHHHHC
T ss_pred --------cCCC-CHHHHHHHh
Confidence 4555 789999987
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-21 Score=215.02 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=145.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC-------CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD-------LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~-------~~ 327 (1139)
..++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ..
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999963 34699999 9999999999999999999999999999999999999998865211 12
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi~l 406 (1139)
...+++.+.+++|.+. +. .+++..+.....+.+..... |.+. .+-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence 2234556777776431 11 12222222222222332221 2221 1124567899999 99999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc---CCC-----eEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM---QGR-----TVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
| +.+|++ |++||+.....+.+.++++. +|. ||+++||+++ -.-||++++|.+|+|+.+|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998875 366 8999999999 4459999999999999999888
Q ss_pred hh
Q 048639 479 SL 480 (1139)
Q Consensus 479 ~l 480 (1139)
++
T Consensus 252 ~~ 253 (347)
T 2obl_A 252 EE 253 (347)
T ss_dssp TT
T ss_pred Hc
Confidence 76
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-22 Score=230.20 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=143.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHHhhhceEEcc-----cccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRLRSQIGLVQQ-----EPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~lR~~i~~V~Q-----dp~LF~ 975 (1139)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|.++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677776 8999999999999999999999999999998 899988776664 2 36788999999 889999
Q ss_pred ccHHHHhccCCCcC-------CHHHHHHHHHHcCchHH-------------Hh----------------hCCCCcccccc
Q 048639 976 CSIRNNICYGNEAA-------SEAEIVEVSKKANIHDF-------------IS----------------SLPDGYDTVVG 1019 (1139)
Q Consensus 976 gTIreNL~~~~~~~-------sd~ei~~al~~~~l~~~-------------i~----------------~lp~gldt~v~ 1019 (1139)
++|+.||.. +|+. +++.++.+++.++.... ++ .+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999987 4655 67778888887653211 11 13568999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccccCCCHH----H-----HHHHHHHHHhhCCCCCCccccCCCeEEEE
Q 048639 1020 EKGCQLSGGQKQRIAIARTLLKRPAI--MLLDEATSALDAE----S-----ERVIVSALEALNPKSSSCGELASRTTQIT 1088 (1139)
Q Consensus 1020 e~G~~LSgGQrQrlalARALlr~p~I--LlLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~~~~~~~~~~tTvI~ 1088 (1139)
+.+..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++... ++.| .+.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~---------~g~t-~~~ 346 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK---------QGLI-TLE 346 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT---------TSSS-CTT
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH---------CCCC-CHH
Confidence 888888999 899999999999999 9999999999965 3 456888887654 4455 799
Q ss_pred EecCchh
Q 048639 1089 VAHRLAT 1095 (1139)
Q Consensus 1089 IaHrl~t 1095 (1139)
+|||++.
T Consensus 347 ~a~r~~~ 353 (372)
T 2ewv_A 347 DAMEASP 353 (372)
T ss_dssp TTTSSCS
T ss_pred HHHHHcC
Confidence 9999984
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-22 Score=207.55 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=125.7
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEcccccccccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS 977 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gT 977 (1139)
+++|++++|+||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999876 7999999999
Q ss_pred HHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH-HhcCCCCEEEeeccccCCC
Q 048639 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR-TLLKRPAIMLLDEATSALD 1056 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR-ALlr~p~ILlLDEaTS~LD 1056 (1139)
+++|+ +|. ++++++++++.....-+ +-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 663 67889999886433211 1234566554321 12 577 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1057 ~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
.+|++.|++.|.+.. . -+.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~---------~----~~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAAR---------T----DMESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHH---------H----HTTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHH---------H----HHHHhh--cc-CCceEEEECCC
Confidence 999999999998654 1 145678 55 78999999885
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-18 Score=194.82 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=68.7
Q ss_pred ccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEE
Q 048639 391 QRGVQLSGGQKQ------RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMI 463 (1139)
Q Consensus 391 ~~g~~LSgGqkq------Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 463 (1139)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. +++|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 356789999999 6788899999999999999999999999999999998864 478999999998766679999
Q ss_pred EEEe
Q 048639 464 AVVE 467 (1139)
Q Consensus 464 ~~l~ 467 (1139)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-20 Score=195.50 Aligned_cols=158 Identities=19% Similarity=0.279 Sum_probs=118.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQ 364 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~ 364 (1139)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. +++ ++|+..-.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999998875443 4688999999986 332 233321000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 048639 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI-AIAR---AIVKNPPILLLDE--ATSALDSESEKLVQEAL 438 (1139)
Q Consensus 365 ~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi-~lAR---al~~~~~illlDE--pts~LD~~~~~~i~~~l 438 (1139)
+...+..+|+.+..+|||||+++ ++++ |+..+|+++|||| |+..+|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123468888999999999999 5566 7899999999999 89889998777777666
Q ss_pred HHHcCCCeEEE--E--ecCccchhccCEEEEEeCcEEEEe
Q 048639 439 ERAMQGRTVIL--I--AHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 439 ~~~~~~~tvi~--i--tH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
. ..+|+|+ + +||.+ ...+|+|..+++|+|++-
T Consensus 133 ~---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 S---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp H---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred h---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 4 2445554 3 49876 455788888889998864
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-21 Score=195.16 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=87.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCccCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHh
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDLD---LKSLR-KNIG----AVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~~---~~~~~-~~i~----~v~Q~~~l~~~ti~~ni~ 354 (1139)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999987775 56777 4788 899999887 221
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 355 VGNMDADDEQIYNASMMANAHSFISQ-LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 111 6688899999 99 999999995 9999999999999999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-20 Score=209.57 Aligned_cols=198 Identities=13% Similarity=0.171 Sum_probs=145.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC-------CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE-------YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~-------~~l 957 (1139)
.++.+++++.|.. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5888999999963 34699999 9999999999999999999999999999999999999999975321 112
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV-VGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~-v~e~G~~LSgGQrQrlalA 1036 (1139)
..+++.+.+++|.+. ...+++..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 223344555554321 112344444444444444322 222211 113346799999 999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe-----EEEEEecCchhhhcCCEEEEEeCCEEE
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT-----TQITVAHRLATVINSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t-----TvI~IaHrl~ti~~~DrI~vl~~G~iv 1111 (1139)
+.+|++ |+++|+.....+.+.+++... ..+++ ||++++|+++ -.-||++++|.+|+|+
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~-------~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGP-------APKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIV 245 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEE-------CSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEE
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhC-------CCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEE
Confidence 688887 999999999999999987541 02244 7999999999 4449999999999999
Q ss_pred EecChhHHhh
Q 048639 1112 EMGSHSTLVA 1121 (1139)
Q Consensus 1112 e~G~~~eLl~ 1121 (1139)
..|+++++..
T Consensus 246 l~~~l~~~~~ 255 (347)
T 2obl_A 246 LTRELAEENH 255 (347)
T ss_dssp BCHHHHTTTC
T ss_pred EeCCHHHcCC
Confidence 9999888753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-19 Score=198.18 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=101.3
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653221 1122233221
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
+-|++ ..+| |++|||||..+|+++++|||| |+++.
T Consensus 79 ------------------------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 ------------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ------------------------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ------------------------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 00111 1223 899999999999999999999 99886
Q ss_pred HHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 432 KLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 432 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
..+. +....|.|+++++|+.+....|||+++|..
T Consensus 114 ~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 5443 334468999999999986666999988854
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=210.69 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCc
Q 048639 393 GVQL-SGGQKQRIAIARAIVKNP--PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDG 469 (1139)
Q Consensus 393 g~~L-SgGqkqRi~lARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 469 (1139)
...| |||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999998877789999999999988889999999665
Q ss_pred E
Q 048639 470 Q 470 (1139)
Q Consensus 470 ~ 470 (1139)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-19 Score=197.84 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=121.6
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 77654433 2455566666555554432 2234
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C--
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ-KQRIAIARAIVKNPPILLLDEATS---A-- 425 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq-kqRi~lARal~~~~~illlDEpts---~-- 425 (1139)
++..+.. +.++..++ +.+.+...+ -.+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~~--~~~~~~~~-----~~~~l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREII--ENGKFDQW-----FDELFGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHHH--HHTHHHHH-----HHHHHSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCCC--CHHHHHHH-----HHHHhccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 4433210 11111111 112222221 12334445789999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHc--CCCeEEEEecCc--c--------------------chhc-cCEEEEEeCcEE
Q 048639 426 -LDS-ESEKLVQEALERAM--QGRTVILIAHRM--S--------------------TIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 426 -LD~-~~~~~i~~~l~~~~--~~~tvi~itH~~--~--------------------~~~~-~d~i~~l~~G~i 471 (1139)
+|. .....+.+.|+++. .++|||++||.. + .+.. ||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45567778887764 289999999995 4 5554 999999999875
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-18 Score=218.04 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=123.3
Q ss_pred ccEEEEe-----EEEECCCCCCCccccceeEEecC-------CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCcc
Q 048639 255 GNIDIRD-----VCFAYPSRPDQLILKGFSLSIPA-------GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322 (1139)
Q Consensus 255 ~~i~~~~-----v~~~y~~~~~~~~l~~is~~i~~-------g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~ 322 (1139)
+.|+++| +++.|++ +.++++|++|++++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999943 34699999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 323 IKDLDLKSLRKNIG-AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 323 ~~~~~~~~~~~~i~-~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
..++| ||||++. ..|+.|||... . ++.+.+ ..+..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------g~~d~~-----------~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L--------------GASDRI-----------MSGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C--------------C--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c--------------CCHHHH-----------hhchhhhHHHHH
Confidence 24666 9999873 45777877421 0 111111 112346788777
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHh-HHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEE--Eec
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSES-EKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVT--ETG 475 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~--~~g 475 (1139)
+ +++|++++.+|+++|||||++++|+.. ...+.+.++.+. + ++|+|++||+++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999987 455677777664 3 8999999999999876 8998887 58887 455
Q ss_pred Chh
Q 048639 476 THH 478 (1139)
Q Consensus 476 ~~~ 478 (1139)
+.+
T Consensus 936 ~~~ 938 (1022)
T 2o8b_B 936 ECE 938 (1022)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-18 Score=193.56 Aligned_cols=183 Identities=11% Similarity=0.126 Sum_probs=120.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
++|+++++.+++|+.++|+||+|||||||++.|++...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999998878 77654443 3566777777666655432 2233
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH-HHHHHHHHHhcCCCCEEEeecccc---C--
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ-KQRIAIARTLLKRPAIMLLDEATS---A-- 1054 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ-rQrlalARALlr~p~ILlLDEaTS---~-- 1054 (1139)
|+..+ ..++++..++.+. ++...+ + .+.+...++|.+| +||+. |+|+..+|++||+||||+ +
T Consensus 97 ~l~~~--~~~~~~~~~~~~~-----~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKRE--IIENGKFDQWFDE-----LFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHH--HHHHTHHHHHHHH-----HHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccC--CCCHHHHHHHHHH-----HhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 44322 1122333333222 111111 1 1222224689999 67776 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc--h--------------------hhh-cCCEEEEEeCCE
Q 048639 1055 -LDA-ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--A--------------------TVI-NSDVIVVMDKGE 1109 (1139)
Q Consensus 1055 -LD~-~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl--~--------------------ti~-~~DrI~vl~~G~ 1109 (1139)
+|. .....+.+.|+++. . ..++|||+++|.. + .+. .||+|++|++|+
T Consensus 165 ~~d~~~~~~~i~~~L~~la-------~-~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFA-------K-STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ----CHHHHHHHHHHHHHH-------H-HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHH-------H-HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 444 45566777777653 0 1234599999985 4 454 499999999987
Q ss_pred E
Q 048639 1110 V 1110 (1139)
Q Consensus 1110 i 1110 (1139)
.
T Consensus 237 ~ 237 (296)
T 1cr0_A 237 Q 237 (296)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=215.82 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=122.0
Q ss_pred ccEEEEe-----EEEECCCCCCcccccceeEEEeC-------CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 048639 884 GRIEFQN-----IKFNYPSRPEVTVLNNFSLQIEP-------GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951 (1139)
Q Consensus 884 g~I~~~n-----vsf~Y~~~~~~~vL~~vsl~I~~-------Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 951 (1139)
+.|+++| |++.|+. +.+|++|+||++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34699999999987 999999999999999999999 99863
Q ss_pred cCCCChHHHhhhce-EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 952 IKEYNLRRLRSQIG-LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 952 i~~~~l~~lR~~i~-~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+.++| +|||++. .-|+.+||.. +.|+.+.+. .+-+.+|++.+
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~---------------rig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT---------------RLGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE---------------ECC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH---------------HcCCHHHHh-----------hchhhhHHHHH
Confidence 35676 9999984 5577777632 122222211 11235777776
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHH-HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAES-ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~t-e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
+ +++||+++.+|+++||||||+++|+.. ...+++.|+.+. + ..++|+|++||.++.+.. ||++.|+ +|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~-------~-~~g~~vl~~TH~~el~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA-------E-TIKCRTLFSTHYHSLVEDYSQNVAVR-LG 927 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH-------H-TSCCEEEEECCCHHHHHHTSSCSSEE-EE
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH-------h-cCCCEEEEEeCCHHHHHHhCCcceee-cC
Confidence 5 999999999999999999999999987 455677777653 0 213459999999998876 8999887 58
Q ss_pred EEE--EecChhH
Q 048639 1109 EVV--EMGSHST 1118 (1139)
Q Consensus 1109 ~iv--e~G~~~e 1118 (1139)
++. +.|++++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 887 5566544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.7e-18 Score=205.04 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=117.4
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh-cCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-VGN 357 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~-~g~ 357 (1139)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .+++++.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 4589999999999999999999999999998885 43 12456677752 24555542 221
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----hHH
Q 048639 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-----SEK 432 (1139)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~-----~~~ 432 (1139)
+.+ +.. . .|+.......+..|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 334 ---~~~------------~~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFE------------EME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHH------------HHH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHH------------HHH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 111 111 1 13333445567889999999999999999999999999 99999998 888
Q ss_pred HHHHHHHHHc-CCCeEEEEecCc----------cchhc-cCEEEEEeCcE
Q 048639 433 LVQEALERAM-QGRTVILIAHRM----------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 433 ~i~~~l~~~~-~~~tvi~itH~~----------~~~~~-~d~i~~l~~G~ 470 (1139)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888877654 589999999998 66665 99999999987
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-19 Score=210.06 Aligned_cols=148 Identities=18% Similarity=0.296 Sum_probs=114.1
Q ss_pred cccceeEEEeC--CcEEEEEcCCCCCHHHHHHHHhccccCCc----cEEEE----CCcccCCCChHHHhhhceEEccccc
Q 048639 903 VLNNFSLQIEP--GLKVALVGPSGAGKSSVLALLLRFYDPNE----GIILI----DGKGIKEYNLRRLRSQIGLVQQEPL 972 (1139)
Q Consensus 903 vL~~vsl~I~~--Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~~~l~~lR~~i~~V~Qdp~ 972 (1139)
+.+.|+++|++ |++++|+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCC--ccc--------cccCCCCCCChHHHHHHHHHHHh---
Q 048639 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDG--YDT--------VVGEKGCQLSGGQKQRIAIARTL--- 1039 (1139)
Q Consensus 973 LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~g--ldt--------~v~e~G~~LSgGQrQrlalARAL--- 1039 (1139)
+|.+|+++||.+++....+...+..+.......++..++.+ ++. +..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999876555566677766666666776665433 333 33366778999999999999999
Q ss_pred cC--CCCEEEeeccc
Q 048639 1040 LK--RPAIMLLDEAT 1052 (1139)
Q Consensus 1040 lr--~p~ILlLDEaT 1052 (1139)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 89999999997
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=185.80 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCCChHHHH------HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1022 GCQLSGGQKQ------RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1022 G~~LSgGQrQ------rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. ..++|+|+|||+.+.
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL---------KKIPQVILVSHDEEL 316 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG---------GGSSEEEEEESCGGG
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEEChHHH
Confidence 3579999999 6788899999999999999999999999999999998764 233469999999876
Q ss_pred hhcCCEEEEEe--CCE
Q 048639 1096 VINSDVIVVMD--KGE 1109 (1139)
Q Consensus 1096 i~~~DrI~vl~--~G~ 1109 (1139)
...||+|++|+ +|.
T Consensus 317 ~~~~d~~~~l~~~~g~ 332 (339)
T 3qkt_A 317 KDAADHVIRISLENGS 332 (339)
T ss_dssp GGGCSEEEEEEEETTE
T ss_pred HHhCCEEEEEEecCCc
Confidence 66699999985 454
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-20 Score=216.93 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=140.2
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSLRKNIGAVSQ-----EPSLFT 346 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-----~~~l~~ 346 (1139)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..++||+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677765 8899999999999999999999999999998 899987776653 2 35678999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCCCcccc
Q 048639 347 GSLMDNIKVGNMDA-------DDEQIYNASMMANA-----------------HSFI------------SQLPDQYSTELG 390 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~i~ 390 (1139)
.++++|+.. .|+. +.+.+..+++.+.. ...+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4543 55666555554431 1111 123567888999
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 391 QRGVQLSGGQKQRIAIARAIVKNPPI--LLLDEATSALDSE----S-----EKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 391 ~~g~~LSgGqkqRi~lARal~~~~~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
+++..+||| ||+++||+++.+|+| +|+||+|++||.. + +...++.+....+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999965 2 23566777777789999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=201.09 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCC-ChHHHHHHHHHHHhcCCC--CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1023 CQL-SGGQKQRIAIARTLLKRP--AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1023 ~~L-SgGQrQrlalARALlr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|++.. . ++|||+|||+++.+..|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~---------~-~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---------D-TRQVLVVTHLAQIAARA 464 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH---------H-HSEEEEECCCHHHHHHS
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh---------C-CCEEEEEecCHHHHHhC
Confidence 456 999999999999999999 9999999999999999999999999764 3 34699999999988889
Q ss_pred CEEEEEeCC
Q 048639 1100 DVIVVMDKG 1108 (1139)
Q Consensus 1100 DrI~vl~~G 1108 (1139)
|++++|++|
T Consensus 465 d~~~~~~~~ 473 (517)
T 4ad8_A 465 HHHYKVEKQ 473 (517)
T ss_dssp SEEEEEECC
T ss_pred CEEEEEecc
Confidence 999999554
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-18 Score=189.74 Aligned_cols=167 Identities=10% Similarity=0.110 Sum_probs=106.4
Q ss_pred CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHH
Q 048639 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 900 ~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
+.++|+|+||++++|+.+||+||+|||||||+++|.+++ |.+.+| ..++++++++|+++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 555554 367889999999754456888
Q ss_pred HHhccCC-------Cc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 048639 980 NNICYGN-------EA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051 (1139)
Q Consensus 980 eNL~~~~-------~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEa 1051 (1139)
+|+.+.. +. ...+++.+.++. +.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 8875321 11 233344444443 112344444 3699999999988 688999999999998
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-hc-CCEEEEEeCCEEEEecChhHHhh
Q 048639 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-IN-SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1052 TS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti-~~-~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
....|.. +.+. .+ .|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~----------~~-~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM----------FH-LRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT----------CS-EEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh----------cC-eEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 7777653 3322 22 4599999974434 33 3334 6675 6777764
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-17 Score=161.35 Aligned_cols=82 Identities=28% Similarity=0.389 Sum_probs=72.0
Q ss_pred cccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCE
Q 048639 390 GQRGVQLSGGQKQRIAIA------RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 390 ~~~g~~LSgGqkqRi~lA------Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~ 462 (1139)
...+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.++. +++|+|+|||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 356789999999999876 99999999999999999999999999999998864 47899999999965556999
Q ss_pred EEEE--eCcEE
Q 048639 463 IAVV--EDGQV 471 (1139)
Q Consensus 463 i~~l--~~G~i 471 (1139)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-19 Score=189.65 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=108.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc---cHHHHhcc--C
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC---SIRNNICY--G 985 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g---TIreNL~~--~ 985 (1139)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999998854 56666543 3
Q ss_pred CC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH----HHHHHHHHHhcCCCCEEEeeccccC------
Q 048639 986 NE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ----KQRIAIARTLLKRPAIMLLDEATSA------ 1054 (1139)
Q Consensus 986 ~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ----rQrlalARALlr~p~ILlLDEaTS~------ 1054 (1139)
.+ ....+.+.++++..++.+.+.. | +..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 33 2345678888877766554433 2 23466664 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1055 -LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1055 -LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
||+.++..+++.+++.. ...+. |++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~-------~~~g~-t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDV-------LERGR-SLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHH-------HHSCC-CHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHH-------HHhCC-CHHHHHHHH
Confidence 99999999999987642 00233 488899984
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-17 Score=190.11 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEecCccchhccCEEEEEe
Q 048639 394 VQLSGGQKQRIAIARAIV----KNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.+....+ +.++|+|||+...+..||+++++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999998 68999999999999999999999999988753 789999999988777899999986
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-17 Score=205.96 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=118.3
Q ss_pred CccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-CCccEEEECCccCCCCCHHH
Q 048639 254 DGNIDIRDVCFAYPSR--PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-PSNGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~~~g~~~~~~~~~~ 330 (1139)
.+.|++++. ++|-- .+.++++|+||+ |++++|+||||||||||+++++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 456888887 44431 235799999999 99999999999999999999999874 67776521 1
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888877 4443 56665432 268999999999999
Q ss_pred H--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 410 I--VKNPPILLLDEA---TSALDSESE-KLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 410 l--~~~~~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
+ +.+|+++||||| |++||+.+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999875 568888866 589999999998876555 223445555443
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=200.17 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=118.8
Q ss_pred ccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHH--------HhccCCCccEEEECCccCC
Q 048639 255 GNIDIRDVCFAYPSR--PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLV--------ARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l--------~g~~~~~~G~i~~~g~~~~ 324 (1139)
+.+++++...-+-.. .+..+++|++|++++|++++|+|||||||||+++.+ .|.+.|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888764433111 134689999999999999999999999999999999 55444433221
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 325 ~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
++.+. .+|. .+|. .+. ....+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~--------------l~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDS--------------QLKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhh--------------HHHhHhhhHHHHH
Confidence 11100 0000 0110 000 0125788888888
Q ss_pred HHHHHH--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhh
Q 048639 405 AIARAI--VKNPPILLLDEATSALDSESEKLV-QEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 405 ~lARal--~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 479 (1139)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555543 3899999999988777899999999999998888776
Q ss_pred hh
Q 048639 480 LL 481 (1139)
Q Consensus 480 l~ 481 (1139)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 63
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.7e-17 Score=158.86 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=73.5
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccC
Q 048639 1013 GYDTVV-----GEKGCQLSGGQKQRIAIA------RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA 1081 (1139)
Q Consensus 1013 gldt~v-----~e~G~~LSgGQrQrlalA------RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~ 1081 (1139)
+++..+ .....+||||||||++|| |||+.+|++|+|||||++||+++...+.+.|++.. .
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~ 111 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL---------K 111 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG---------G
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHH---------c
Confidence 555554 234578999999999876 99999999999999999999999999999999764 2
Q ss_pred CCeEEEEEecCchhhhcCCEEEEE--eCCEE
Q 048639 1082 SRTTQITVAHRLATVINSDVIVVM--DKGEV 1110 (1139)
Q Consensus 1082 ~~tTvI~IaHrl~ti~~~DrI~vl--~~G~i 1110 (1139)
+++|+|+|||+++....||+|++| ++|..
T Consensus 112 ~~~tiiivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 112 KIPQVILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp GSSEEEEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred cCCEEEEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 344699999999655569999999 56643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=179.99 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=102.5
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCC-------CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDP-------SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
-+++|++++|+||||||||||++.|+|.+.| ..|.+++++.+.. + ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997665 4457888876521 1 2357788888888777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH-------ccCCCEEEEeCCCCCC
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI-------VKNPPILLLDEATSAL 426 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal-------~~~~~illlDEpts~L 426 (1139)
.+.......+ |++++..++++ ..+|+++++||||+.+
T Consensus 95 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNSNH------------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSHHH------------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCChHH------------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8754322111 11112222222 3589999999999999
Q ss_pred CHH-------hH-----HHHHHHHHHHc--CCCeEEEEecCcc----chhc-cCEEEEEeCcE
Q 048639 427 DSE-------SE-----KLVQEALERAM--QGRTVILIAHRMS----TIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 427 D~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~~~----~~~~-~d~i~~l~~G~ 470 (1139)
|++ .+ ..+.+.+.++. .|+|+|++||..+ .+.. ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 21 24555555543 3899999999544 4765 99999998753
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-18 Score=192.95 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=119.4
Q ss_pred cccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCc----cE-EEECCcccCCCChHHHhhhceEEccccccc
Q 048639 903 VLNNF-SLQIEPGLKVALVGPSGAGKSSVLALLLRFY--DPNE----GI-ILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974 (1139)
Q Consensus 903 vL~~v-sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~~~l~~lR~~i~~V~Qdp~LF 974 (1139)
.|+.+ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6666 68 999998752 357889999999988
Q ss_pred cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEEE
Q 048639 975 SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL-------KRPAIML 1047 (1139)
Q Consensus 975 ~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl-------r~p~ILl 1047 (1139)
..++.+|+.+... .+ |.+|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8899999877532 11 346777777777777 6899999
Q ss_pred eeccccCCCHHH-------H-----HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1048 LDEATSALDAES-------E-----RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1048 LDEaTS~LD~~t-------e-----~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
+||||+.+|++. + ..+.+.|++.. ...++|||+++|....... ++.+.+...|++++++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la--------~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--------NLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH--------HHTTCEEEEEEECC---------------CCCCCTT
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH--------HHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 999999999863 1 23334444332 0224569999998775542 3456778889999888
Q ss_pred ChhHHh
Q 048639 1115 SHSTLV 1120 (1139)
Q Consensus 1115 ~~~eLl 1120 (1139)
++..|.
T Consensus 309 ~~~rL~ 314 (349)
T 1pzn_A 309 ATLRVY 314 (349)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 877774
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=186.71 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1024 QLSGGQKQRIAIARTLL----KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALl----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
.||||||||++|||+|+ ++|++||||||||+||+.....+.+.|++.. .+++++|+|||+...+..|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~~~ii~th~~~~~~~~ 403 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR---------NPDLQFIVISLKNTMFEKS 403 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC---------BTTBEEEEECSCHHHHTTC
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHHhC
Confidence 49999999999999999 6899999999999999999999999998764 2345699999998888889
Q ss_pred CEEEEEe
Q 048639 1100 DVIVVMD 1106 (1139)
Q Consensus 1100 DrI~vl~ 1106 (1139)
|+++++.
T Consensus 404 d~~~~~~ 410 (430)
T 1w1w_A 404 DALVGVY 410 (430)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-18 Score=192.92 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=118.2
Q ss_pred ccccce-eEEecCCCEEEEECCCCCcHHHHHHHHHhcc--CCCc----cE-EEECCccCCCCCHHHHhcceEEEecCCCC
Q 048639 273 LILKGF-SLSIPAGKMVALVGSSGCGKSTVISLVARFY--DPSN----GD-ILIDSLNIKDLDLKSLRKNIGAVSQEPSL 344 (1139)
Q Consensus 273 ~~l~~i-s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 344 (1139)
+.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 367776 6899999999999999999999999999998 6766 67 899987642 24578899999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc-------cCCCEE
Q 048639 345 FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV-------KNPPIL 417 (1139)
Q Consensus 345 ~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~-------~~~~il 417 (1139)
+..++.+||.+.... . |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999876421 1 345666666666666 789999
Q ss_pred EEeCCCCCCCHHh------------HHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 418 LLDEATSALDSES------------EKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 418 llDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+||||+.+|++. ...+...|.++. .++|+|+++|....... ++.+.+...|++++++.+..+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999862 234444455443 48899999998765542 344667778888777766555
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-18 Score=187.35 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 048639 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM 350 (1139)
Q Consensus 271 ~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 350 (1139)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 555544 356789999999743345899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 048639 351 DNIKVGNMD--------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422 (1139)
Q Consensus 351 ~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEp 422 (1139)
+|+.+.... ...+.+. +.++.+..+.+ .....||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMH---------RTLKNIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHH---------HHHHHHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHH---------HHHHHHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 987653211 1111111 22222222222 2446899999999988 688999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch-hc-cCEEEEEeCcEEEEecChhhhh
Q 048639 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTI-VN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 423 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
....|.. + .++ .+.|++++||+...+ +. ++.+ ++|+ +.+++.
T Consensus 143 ~~~~~~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8877764 1 122 378999999974433 33 4434 6664 455554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-18 Score=180.38 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=108.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCccEEEE-------CCccc-
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY-----DPNEGIILI-------DGKGI- 952 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di- 952 (1139)
|+++|++|+|+ .++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 788887754 22222
Q ss_pred --CCCC--------hHHHhhhceEEccccccccc-cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCC
Q 048639 953 --KEYN--------LRRLRSQIGLVQQEPLLFSC-SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021 (1139)
Q Consensus 953 --~~~~--------l~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~ 1021 (1139)
.... .+.+++.++.+.|++..+++ ++..|+..+. ...++++.+.++..++ |. -.++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~-------~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVDSNI-------AV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHHTTC-------CE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHHcCC-------Ce---EEEEec
Confidence 2111 13456667777775443333 3344444321 1123345555544332 21 113444
Q ss_pred CCCCChHHHHH-HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 1022 GCQLSGGQKQR-IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1022 G~~LSgGQrQr-lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
...+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 45799999999 899999999999999999999999999999999998765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-19 Score=202.55 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=119.7
Q ss_pred cccceeEEecC--CCEEEEECCCCCcHHHHHHHHHhccCCCc----cEEEE----CCccCCCCCHHHHhcceEEEecCCC
Q 048639 274 ILKGFSLSIPA--GKMVALVGSSGCGKSTVISLVARFYDPSN----GDILI----DSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 274 ~l~~is~~i~~--g~~~~ivG~sGsGKSTll~~l~g~~~~~~----G~i~~----~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99887 35555 4444455 56999999998
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc-cCCCEEEEeC-
Q 048639 344 LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV-KNPPILLLDE- 421 (1139)
Q Consensus 344 l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~-~~~~illlDE- 421 (1139)
+|..|++|||.++..+..+.... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999875432111111 23455566777777664 4778888887
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhh
Q 048639 422 --AT------SALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 422 --pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+ +++|+..+..+.+.+.++.+ +.++|+++|.-..-+.+|++.++++ +...|+.++|
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 54 46777777777777765533 6777777765222223565555543 3344444444
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-19 Score=191.28 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=116.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccC-------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYD-------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSL 349 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti 349 (1139)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589998888888888776 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH-HHccCCCEEEEeCCCCCCCH
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR-AIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR-al~~~~~illlDEpts~LD~ 428 (1139)
.+|+ +|. +.+++.++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 456666666432110 001112233332211 22 567 88999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 429 ESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 429 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
++++.|.+.|....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999988776543 34567 33 67999988874
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-18 Score=210.49 Aligned_cols=190 Identities=14% Similarity=0.271 Sum_probs=122.1
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEEECCccCC
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGF----------SLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDILIDSLNIK 324 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~i----------s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~~~g~~~~ 324 (1139)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999632 23455555 366765 999999999999999999999988 8999999999863
Q ss_pred C---CCHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH
Q 048639 325 D---LDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 325 ~---~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq 400 (1139)
. -....+++.++|++|++.+++. ||++||.++. +.+..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCCcc-----------ccc---
Confidence 2 1234578899999999988764 9999986421 01111111 111
Q ss_pred HHHHHHHHHHccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHc-C--CCeEEEEecCccchh--------c----
Q 048639 401 KQRIAIARAIVKNPPILLLDEA------TSALDSESEKLVQEALERAM-Q--GRTVILIAHRMSTIV--------N---- 459 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~itH~~~~~~--------~---- 459 (1139)
++++.++.+...+|+++++||| |++||+.....+.+.++.+. + +.++++++|+++... .
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334455555678999999999 99999999999999998853 2 467888999987431 1
Q ss_pred -cCEEEEEeCcEEEEecChhhhh
Q 048639 460 -ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 460 -~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
...|.|+.++.++..|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568899999888888766553
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.4e-19 Score=200.99 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=115.5
Q ss_pred EEEeEEEE---CCCCCCcccc---------cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 887 EFQNIKFN---YPSRPEVTVL---------NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 887 ~~~nvsf~---Y~~~~~~~vL---------~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
+|+||+|+ |+.. +.++| +++||.|++|+.++|+||||||||||+++|.|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8632 23466 9999999999999999999999999999999999999999999985 45
Q ss_pred CChHHHhhhceEEc-ccccc---ccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 955 YNLRRLRSQIGLVQ-QEPLL---FSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 955 ~~l~~lR~~i~~V~-Qdp~L---F~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+.+..+|+++++++ |++.+ +..|+++||..+....+|..+...++.+.+++++..+|.|++|.+++.+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 788999999876443334333333444556678888899999999988887788889
Q ss_pred HHHHHHHH
Q 048639 1031 QRIAIART 1038 (1139)
Q Consensus 1031 QrlalARA 1038 (1139)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-18 Score=212.91 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=123.2
Q ss_pred cEEEEeEEEECCCCCCcccccce----------eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccC
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNF----------SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIK 953 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~v----------sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~ 953 (1139)
.++++|+++.|+.. ..++|+.+ +++++. +||||+||||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999632 22455444 366664 999999999999999999999988 7999999999963
Q ss_pred CC---ChHHHhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 954 EY---NLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 954 ~~---~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
.. ....+|+++++++|++.+++ .|+++|+.... ... ... +..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~~------~~~-----------~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NAI------AGE-----------GMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HHH------HCS-----------SSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HHh------cCC-----------ccccc---
Confidence 22 23468899999999998764 58888885320 010 000 01122
Q ss_pred HHHHHHHHHhcCCCCEEEeecc------ccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-------
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEA------TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV------- 1096 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEa------TS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti------- 1096 (1139)
++++.++.+....|+++++||| |+++|+.+.+.+.+.++++.. ...+.++++++|+++..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~-------~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ-------RQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT-------SSSCCEEEEEESSSCTTTCHHHHH
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh-------cCCCCceEEEeccchhccHHHHHH
Confidence 2344455555668999999999 999999999999999998641 13355688999987733
Q ss_pred -h-----cCCEEEEEeCCEEEEecChhHHh
Q 048639 1097 -I-----NSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1097 -~-----~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
. ....|+|+.++.+++.|+++++.
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 1 14679999999999989876554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-20 Score=210.97 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccc-cCCCccE
Q 048639 180 IWVGAVVVTA-KRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKEL-EKIDGNI 257 (1139)
Q Consensus 180 ~~~g~~~v~~-~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i 257 (1139)
.+.|.+.+.. +.++.+.+.+++.++.....+ .+......+..+..+..|+.+++ +|........... ....+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3456555555 789999988877655543332 11111122222333456776666 2221111000000 0011234
Q ss_pred ---------EEEeEEEE---CCCCCCCccc---------cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 258 ---------DIRDVCFA---YPSRPDQLIL---------KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 258 ---------~~~~v~~~---y~~~~~~~~l---------~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
+|+|++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 78899998 8531 23455 99999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcccccc
Q 048639 317 LIDSLNIKDLDLKSLRKNIGAVS-QEPSL---FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392 (1139)
Q Consensus 317 ~~~g~~~~~~~~~~~~~~i~~v~-Q~~~l---~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~ 392 (1139)
.++|. .++.....++.++|++ |++.+ +..|+++||..+.....+..+...++.+.+.+++..+|.|+++.+++-
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~ 284 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSC 284 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 99985 3444444678899999 88876 678999999987543333222222333456678888999999989988
Q ss_pred CCCCChHHHHHHHHHH
Q 048639 393 GVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 393 g~~LSgGqkqRi~lAR 408 (1139)
..+-..+..+|+....
T Consensus 285 H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 285 HAGSCELTFERLALMV 300 (361)
T ss_dssp ECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888899999998876
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-17 Score=180.99 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=103.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCCCCcc-cHHHHHhcC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPSLFTG-SLMDNIKVG 356 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~l~~~-ti~~ni~~g 356 (1139)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ +.+++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 1222 4579999999988764 888888643
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH
Q 048639 357 NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436 (1139)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~ 436 (1139)
. ..+.+..+-..+...+ .....++..+|||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~-------------~~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred H-------------hCCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 1 0000000111111111 11123566779999999999999994444 344444444444
Q ss_pred HHHHHc--CCCeEEEEecCccc
Q 048639 437 ALERAM--QGRTVILIAHRMST 456 (1139)
Q Consensus 437 ~l~~~~--~~~tvi~itH~~~~ 456 (1139)
.++... .+.|+|++||....
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 27899999998554
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-18 Score=183.25 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=105.9
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc---ccHHHHHhcC--
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT---GSLMDNIKVG-- 356 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~ti~~ni~~g-- 356 (1139)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++ .|+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 3677776543
Q ss_pred CCC-CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC------
Q 048639 357 NMD-ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ----KQRIAIARAIVKNPPILLLDEATSA------ 425 (1139)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq----kqRi~lARal~~~~~illlDEpts~------ 425 (1139)
.+. ...+.+.+.++..+ ....+...+.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 222 22333433332221 1122344567888886 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHH--cCCCeEEEEecCc
Q 048639 426 -LDSESEKLVQEALERA--MQGRTVILIAHRM 454 (1139)
Q Consensus 426 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~~ 454 (1139)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998888888764 3589999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-17 Score=173.18 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=100.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccC-------CccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDP-------NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI 982 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-------~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL 982 (1139)
.|++||.++|+||||||||||++.|++.+.| ..|.|++++.+.. + +++++.++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 4558888887531 1 3457778888877777889998
Q ss_pred ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEEEeeccccCC
Q 048639 983 CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL-------KRPAIMLLDEATSAL 1055 (1139)
Q Consensus 983 ~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl-------r~p~ILlLDEaTS~L 1055 (1139)
.+... .+.. .|++++..+++++ .+|++|+|||||+.+
T Consensus 95 ~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARA-FNSN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEEC-CSHH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEec-CChH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 76432 1111 1222233333333 489999999999999
Q ss_pred CHHH-------H-----HHHHHHHHhhCCCCCCccccCCCeEEEEEec----Cchhhhc-CCEEEEEeCC
Q 048639 1056 DAES-------E-----RVIVSALEALNPKSSSCGELASRTTQITVAH----RLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1056 D~~t-------e-----~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH----rl~ti~~-~DrI~vl~~G 1108 (1139)
|++. + ..+.+.|.+.. . ..++|||+++| ....+.. ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~-------~-~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLA-------N-LYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHH-------H-HHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHH-------H-HCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9842 2 24555555432 0 22345999999 4444765 9999999975
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-17 Score=183.86 Aligned_cols=147 Identities=24% Similarity=0.305 Sum_probs=107.5
Q ss_pred EeEEEECCCCCCcccccceeE-------EEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHH
Q 048639 889 QNIKFNYPSRPEVTVLNNFSL-------QIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl-------~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~l 960 (1139)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|. +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888776 78899999999999999999999999999987 56665543333 222 2
Q ss_pred hhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 961 RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+...++++|.+.-.. ..+-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 344566777543211 011111 9999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCC
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
.+|++|++|||| |.++.+.+.++.+ .+. |||+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~~~------------~G~-~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTAAE------------TGH-LVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHHHH------------TTC-EEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHHHh------------cCC-EEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 8888666666543 334 599999999999779998887443
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=197.50 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=116.6
Q ss_pred ccEEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 884 GRIEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
+.|.+++..--+-.. .+..|++|+||++++|+.++|+|||||||||+++.+.... +.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~---------------------~~ 688 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV---------------------LM 688 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH---------------------HH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH---------------------HH
Confidence 458888765433211 1246899999999999999999999999999999983221 00
Q ss_pred hhc-eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh-
Q 048639 962 SQI-GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL- 1039 (1139)
Q Consensus 962 ~~i-~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL- 1039 (1139)
.++ ++||++...+. +.+.+ +.+.++.+.+ ...+|+|++++..+|+++
T Consensus 689 aq~G~~vpa~~~~~~--~~d~i---------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~ 737 (934)
T 3thx_A 689 AQIGCFVPCESAEVS--IVDCI---------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILR 737 (934)
T ss_dssp HHHTCCBSEEEEEEE--CCSEE---------------EEECC-----------------------CHHHHHHHHHHHHHH
T ss_pred HhcCCccccccccch--HHHHH---------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHH
Confidence 111 23444322110 00011 1111211111 124788888888888888
Q ss_pred -cCCCCEEEeeccccCCCHHHHHHH-HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChh
Q 048639 1040 -LKRPAIMLLDEATSALDAESERVI-VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1040 -lr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 1117 (1139)
+.+|+++||||||+++|+.....+ +..++... ...++|+|++||..+....||++..+++|++...++++
T Consensus 738 ~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~--------~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 738 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA--------TKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH--------HTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------hcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 899999999999999999887777 55555432 01234599999998877789999999999999877776
Q ss_pred HH
Q 048639 1118 TL 1119 (1139)
Q Consensus 1118 eL 1119 (1139)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-17 Score=185.72 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=81.6
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc-cCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF-YDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
+|+++.|++ +.++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. . .+.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888963 45999999998 99999999999999999998 889999 8888877643 11 1 3568999
Q ss_pred ecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 339 SQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 339 ~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
+|++.++ .-|+.|+..++......++..... +.+.. .......++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~------~~l~~-------~~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTII------SYIDE-------QFERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHH------HHHHH-------HHHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHH------HHHHH-------HHHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987765 458999988764211001100000 11110 011234579999999999999986 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHcC--CCeEEEEecCccc
Q 048639 418 LLDEATSA-LDSESEKLVQEALERAMQ--GRTVILIAHRMST 456 (1139)
Q Consensus 418 llDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~ 456 (1139)
++||||++ ||+... +.++.+.+ +.++|+.+||+..
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999864 33444433 5678888898753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.7e-17 Score=182.67 Aligned_cols=147 Identities=22% Similarity=0.239 Sum_probs=106.5
Q ss_pred EeEEEECCCCCCCccccceeE-------EecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHH
Q 048639 260 RDVCFAYPSRPDQLILKGFSL-------SIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~-------~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~ 331 (1139)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 4677777543 3567777776 77899999999999999999999999999997 566655433322 11 1
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+...++++|.+.-.. ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 234556666432110 011110 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDG 469 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 469 (1139)
.+|+++++|||| |.++...+.+. ...|+|+++++|+.+.+..+||++.|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775554443 34599999999999998779999998655
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=195.27 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=111.0
Q ss_pred cccEEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEECCcccCCCChHH
Q 048639 883 KGRIEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-PNEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~l~~ 959 (1139)
.+.|++++. ++|-- .+.++++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456899887 55531 135799999999 99999999999999999999999974 6777652 1 1
Q ss_pred HhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
.+.++++++| +|. -++.+|+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2456888887 443 355555421 268899999999999
Q ss_pred h--cCCCCEEEeecc---ccCCCHHHH-HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1039 L--LKRPAIMLLDEA---TSALDAESE-RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1039 L--lr~p~ILlLDEa---TS~LD~~te-~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
+ +.+|+++||||| |+++|..+. ..+.+.|.+ .++ |+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-----------~g~-~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-----------RRA-YTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HTC-EEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-----------CCC-EEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 468888864 233 599999998876544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-16 Score=175.50 Aligned_cols=165 Identities=19% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEcccccccc-ccHHHHhccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPLLFS-CSIRNNICYG 985 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~LF~-gTIreNL~~~ 985 (1139)
+|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++|+|++.+++ .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2333 457999999997765 4778887542
Q ss_pred CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccCCCHHHHHHH
Q 048639 986 NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSALDAESERVI 1063 (1139)
Q Consensus 986 ~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~LD~~te~~I 1063 (1139)
. ..+.+..+-..++..+.. ...++..++||.+||||+..+|+ +|+|| |+++.| +
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 001111111122222211 12356677999999999999999 56666 444433 3
Q ss_pred HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC----------CEEEEEeCCE
Q 048639 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINS----------DVIVVMDKGE 1109 (1139)
Q Consensus 1064 ~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~----------DrI~vl~~G~ 1109 (1139)
.+.+++.. +..+ .|+|++||...+.... -.|..+-.|+
T Consensus 237 ~~~~~~~~-------~~~~-~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 LEQAKKFH-------EAVG-LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHH-------HHHC-CSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHH-------HHcC-CcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33333321 0013 3599999976553221 3566666665
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.5e-17 Score=187.44 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=101.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|.++|++++|++ +.+++|+||+| +|+||||||||||++.|+|...|..| .+|.++... ....+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999963 46999999998 99999999999999999999886665 233332211 1112356
Q ss_pred eEEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+++++|++.++ ..||.||+.++... ...+.+.. +.+++.. .++++++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998877 46999999887531 11111111 1122221 3456678899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 414 PP---ILLLDEAT-SALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 414 ~~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
|+ ++++|||| ++||+.... .++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~----~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIE----FMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHH----HHHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHH----HHHHHhccCcEEEEEEcccCc
Confidence 99 99999999 699987642 233444578899999987764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.3e-17 Score=173.04 Aligned_cols=168 Identities=16% Similarity=0.232 Sum_probs=102.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc-----CCCccEEEE-------CCccCC
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY-----DPSNGDILI-------DSLNIK 324 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~-----~~~~G~i~~-------~g~~~~ 324 (1139)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 999999999999999999999999999998 888887654 222221
Q ss_pred C---C--------CHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccc
Q 048639 325 D---L--------DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQ 391 (1139)
Q Consensus 325 ~---~--------~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~ 391 (1139)
+ . ..+.+++.++++.|+....++ .+..++..+.. ..++++. +.+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~---------~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMI---------EWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHH---------HHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHH---------HHHHHc--CCCeEEEEe
Confidence 1 1 012344445555554333322 33333332211 0011111 122221 2222 3467
Q ss_pred cCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 392 RGVQLSGGQKQR-IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 392 ~g~~LSgGqkqR-i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
+...+|+||||| +..||+++.+|+++++||||||+|......+.+.|.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 777899999999 899999999999999999999999999999998887754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-18 Score=188.07 Aligned_cols=129 Identities=11% Similarity=0.104 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc---C
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA---A 989 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~---~ 989 (1139)
++..|||+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 47899999999999999999999999863 2 1 1 4456666999999999999998654210 0
Q ss_pred CHHHHHHHHHHcCchHHHhhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccccCCCHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPDGYDTV------VGEKGCQLSGGQKQRIAIA--RTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~gldt~------v~e~G~~LSgGQrQrlalA--RALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+....-++.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011111233567788888998764 4455788999999999998 666 899999999999999875
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-16 Score=185.55 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=100.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|.++||+++|+. .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 46999999998 99999999999999999999876555 2444433211 112456
Q ss_pred ceEEccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 964 IGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 964 i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++++|++.++ ..||.||+.++.. ...++.|+.+ .+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh-ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 6799999987643 2222223321 123321 3556778899999999999
Q ss_pred CC---EEEeeccc-cCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1043 PA---IMLLDEAT-SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1043 p~---ILlLDEaT-S~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
|+ +|++|||| +++|+... .+.+.|. .+ .++|.|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------------~~-v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------------EK-VNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HHHHHHT------------TT-SEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HHHHHHh------------cc-CcEEEEEEcccCc
Confidence 99 99999999 69998763 3333342 22 3488888887764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-16 Score=194.71 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred cEEEEeEEEEC----CCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 256 NIDIRDVCFAY----PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 256 ~i~~~~v~~~y----~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
.+.+++...-. -...+..+++|+||++++|++++|+||||||||||++++.+..-..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 57777653211 0112457999999999999999999999999999999997642110
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+.-.++|++..-+ .+.+++. . .+ |....+..+.+++|+|++|+..++|+ +
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-~-----------------------~i--g~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-T-----------------------RM--GAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-E-----------------------EC------------CCHHHHHHHHHHHHHH-C
T ss_pred -hcCccccchhhhh--hHHHHHH-H-----------------------hC--ChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 0111233221100 0011110 0 00 00111122335789999999999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHc--CCCeEEEEecCccchhccCEEEE-EeCcEE
Q 048639 412 KNPPILLLDEATSALDSESEKLVQ-EALERAM--QGRTVILIAHRMSTIVNADMIAV-VEDGQV 471 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~-l~~G~i 471 (1139)
.+|+++||||||++||+.....+. ..++.+. .|+|+|++||+++....||+.-- +.++++
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 999999999999999999877765 5555542 48999999999988766665421 344444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-16 Score=167.88 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=114.5
Q ss_pred CccccceeE-EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh---cceEEEecCCCCCcc
Q 048639 272 QLILKGFSL-SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR---KNIGAVSQEPSLFTG 347 (1139)
Q Consensus 272 ~~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~i~~v~Q~~~l~~~ 347 (1139)
.+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+. +.+.++ ..+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457899988 8999999999999999999999999999888888888765443 222222 234444433210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~ 425 (1139)
+++..-.. ... ... + ..+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01111000 000 000 0 0011 1349999999888888778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHc--CCCeEEEEecCc--------cchhc-cCEEEEEeCcE
Q 048639 426 L--DSESEKLVQEALERAM--QGRTVILIAHRM--------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 426 L--D~~~~~~i~~~l~~~~--~~~tvi~itH~~--------~~~~~-~d~i~~l~~G~ 470 (1139)
+ |+.....+.+.++++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988888888887763 488999999998 44665 99999998653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-15 Score=151.43 Aligned_cols=80 Identities=33% Similarity=0.420 Sum_probs=71.3
Q ss_pred cCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEE-
Q 048639 392 RGVQLSGGQKQRIAIARAIV----KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVV- 466 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l- 466 (1139)
....||||||||++|||+++ ++|+++||||||++||+.+...+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 45689999999999999995 5679999999999999999999999999888788999999999888889999865
Q ss_pred -eCcEE
Q 048639 467 -EDGQV 471 (1139)
Q Consensus 467 -~~G~i 471 (1139)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-16 Score=179.51 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=80.0
Q ss_pred EeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF-YDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl-~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
+||+++|.. ..++++++|+| +|+|+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888953 46999999988 99999999999999999998 888899 9999987753 11 1 4668999
Q ss_pred ccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 048639 968 QQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046 (1139)
Q Consensus 968 ~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~IL 1046 (1139)
+|++.++ .-|+.||.-++......++..... +++.. .++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~------~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTII------SYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHH------HHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHH------HHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987544 568888877653211001111111 11111 011122 358999999999999986 99
Q ss_pred EeeccccC-CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1047 LLDEATSA-LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1047 lLDEaTS~-LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
++||||++ ||+... +.+++... ....++|...|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~--------~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHN--------KVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTT--------TSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHh--------cCCEEEEEEeCCCCC
Confidence 99999985 999874 33443320 123557888898754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-17 Score=180.55 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCC---C
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---A 360 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~ 360 (1139)
++.+++|+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999763 2 0 0 3456667999999999999999775321 0
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCCCcc------ccccCCCCChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHh
Q 048639 361 DDEQIYNASMMANAHSFISQLPDQYSTE------LGQRGVQLSGGQKQRIAIA--RAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------i~~~g~~LSgGqkqRi~lA--Ral~~~~~illlDEpts~LD~~~ 430 (1139)
.....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||||+++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112234457788999997653 5667889999999999998 565 999999999999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.2e-15 Score=148.56 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh
Q 048639 1022 GCQLSGGQKQRIAIARTLL----KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALl----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
...||||||||++|||+++ ++|+++||||||++||+.+.+.+.+.|++.. .+ +++|+|+||..++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~---------~~-~~~ivith~~~~~~ 131 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS---------KE-SQFIVITLRDVMMA 131 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---------TT-SEEEEECSCHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc---------cC-CEEEEEEecHHHHH
Confidence 3579999999999999996 6679999999999999999999999998764 33 45999999999988
Q ss_pred cCCEEEEE--eCCEEE
Q 048639 1098 NSDVIVVM--DKGEVV 1111 (1139)
Q Consensus 1098 ~~DrI~vl--~~G~iv 1111 (1139)
.||+|+++ ++|...
T Consensus 132 ~ad~i~~v~~~~g~s~ 147 (173)
T 3kta_B 132 NADKIIGVSMRDGVSK 147 (173)
T ss_dssp TCSEEEEEEEETTEEE
T ss_pred hCCEEEEEEecCCEEE
Confidence 89999855 577643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-15 Score=160.86 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=114.9
Q ss_pred cccccceeE-EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh---hceEEccccccccc
Q 048639 901 VTVLNNFSL-QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS---QIGLVQQEPLLFSC 976 (1139)
Q Consensus 901 ~~vL~~vsl-~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~---~i~~V~Qdp~LF~g 976 (1139)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+.. .+.++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhh---
Confidence 468999998 89999999999999999999999999988888888888765543 333333 34554443221
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~ 1054 (1139)
+++...+ .... .. + +. .+. ...|.+|.++.+.+.+...+|+ +|++||||+.
T Consensus 83 ---~~~~~~~-~~~~-~~-------~--------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIID-ALMK-EK-------E--------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEE-CCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEe-cccc-cc-------C--------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 1221110 0000 00 0 00 010 1248999988888877777999 9999999988
Q ss_pred C--CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc--------hhhhc-CCEEEEEeCC
Q 048639 1055 L--DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--------ATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1055 L--D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl--------~ti~~-~DrI~vl~~G 1108 (1139)
+ |+.....+.+.|++... ..++|+|+++|.. ..+.. ||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~--------~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLN--------KWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHH--------HTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHH--------hCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99888888888876530 2345699999998 44655 9999999864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-15 Score=188.13 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=110.5
Q ss_pred ccEEEEeEEEECCCC----CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEEECCccCCCCCHH
Q 048639 255 GNIDIRDVCFAYPSR----PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~----~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~~~g~~~~~~~~~ 329 (1139)
+.+.+++.. +|-- .++.+++|++|+ ++|++++|+||||||||||+++++|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 347777652 3310 135699999999 99999999999999999999999997532 2221 1111
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
-+..+++++| +|.. ++.||+..+ ..++|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1234666655 3332 444443211 1245677664 44444
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEec
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLV-QEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 475 (1139)
..+.+|+++|||||++++|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++....
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 56899999999999999998765443 55665553 389999999999887779988888888886543
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-15 Score=159.73 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=104.0
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCcccCCCChHHHhhhceEEccccccccc-cH----HHH
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SI----RNN 981 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TI----reN 981 (1139)
-+.++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. +. .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999999877643 246789999999988864 33 455
Q ss_pred hccCCCc--CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 982 ICYGNEA--ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 982 L~~~~~~--~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+.... .+.++ ++.++.+++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5432110 01112 23344557999999 99999
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
...+.+.+. +++||++++|+++.+.. |+ +.+| .|+++++.+
T Consensus 120 ~~~i~~~l~-------------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP-------------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT-------------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc-------------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999988764 23569999999998876 43 6777 678888864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-15 Score=172.50 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=113.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466667 788853 35 9999999999999 9999999999999999999983 4566665444444567
Q ss_pred hceEEccccccc-cccHHHHhccCCCcCCHHH------------HHHHHHHc-CchHHHhhCCCCcccc-------ccCC
Q 048639 963 QIGLVQQEPLLF-SCSIRNNICYGNEAASEAE------------IVEVSKKA-NIHDFISSLPDGYDTV-------VGEK 1021 (1139)
Q Consensus 963 ~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~e------------i~~al~~~-~l~~~i~~lp~gldt~-------v~e~ 1021 (1139)
.+++++|++.++ ..|+.||+.++.. .+.+. ..+.++.. ++. .+++..-|+. |.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~---r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIR---RVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CC---CCCCCSCC--CCEEEEEECCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhh---hhhcccccccccEEEEEEeCC
Confidence 899999999877 5699999998753 33222 11222221 111 1112223333 1234
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHh-hCCCCCCccccCCCeEEEEEec
Q 048639 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA-LNPKSSSCGELASRTTQITVAH 1091 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~~~~~~~~~~~~~~tTvI~IaH 1091 (1139)
+..|+..+ +.++|+|-.+++|+++||+|..|.+.--..+.+.|++ +. ..+..|+.|+.
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---------~~gi~I~~is~ 217 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---------SNGVQIYQFPT 217 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---------TTBCCCCCCC-
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---------HcCCcEEecCC
Confidence 45577766 7899999999999999999999998777777777876 33 22334777775
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-15 Score=162.14 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=101.8
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SL----MDN 352 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti----~~n 352 (1139)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999998876543 235679999999887754 44 455
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~ 432 (1139)
+.+.... .|-.+++ ++.++.+++++||| ||+.+..
T Consensus 87 ~~~~~~~-------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNY-------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEE-------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhcc-------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 5442100 0000111 23334457999999 9999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhh
Q 048639 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 433 ~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
.+.+.+. ++.||+++||+++.+.. |+ +..| .++++++.
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 9988775 58899999999998865 32 5666 56777664
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-15 Score=170.42 Aligned_cols=179 Identities=12% Similarity=0.137 Sum_probs=114.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+++++ +++|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 356666 788853 35 9999999999999 9999999999999999999984 3444444333333456
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCHHH----HHHHHHHhcHHHHHHhC-------CCCCCcc-------ccccCC
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQ----IYNASMMANAHSFISQL-------PDQYSTE-------LGQRGV 394 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------i~~~g~ 394 (1139)
.++|++|++.++. .|+.||+.+|.. ...+. +.+... ....+.+... +...++. +-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 8999999998874 599999999863 22221 111111 1122333332 1112222 123445
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-Hc-CCCeEEEEec
Q 048639 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AM-QGRTVILIAH 452 (1139)
Q Consensus 395 ~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH 452 (1139)
.|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677766 7999999999999999999999998777777777775 54 4778888775
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-14 Score=182.49 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=103.2
Q ss_pred ccEEEEeEEEECC------CCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 884 GRIEFQNIKFNYP------SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 884 g~I~~~nvsf~Y~------~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.|.+++.. +| ...+..|++|+||++++|+.++|+|||||||||+++++.++.-
T Consensus 639 ~~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 357777643 33 1113579999999999999999999999999999999865421
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+.+.-++||++..-+ ++.+++ +...++.+.+ ..+-+.+|+|++|+..++|
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i---------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGI---------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEE---------------EEEC---------------------CCHHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHH---------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHH
Confidence 111223455543211 011111 1111222211 1223468999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHH-HHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCE
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIV-SALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~Dr 1101 (1139)
+ +.+|++|||||||+++|+.....+. ..++... ...++|+|++||.++....||+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~--------~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI--------RDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------HhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999999887776 5555432 0223459999999887655554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-14 Score=155.88 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh-cCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-VGNMD 359 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~-~g~~~ 359 (1139)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|+..+... ..+.+++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999999764 46653 3443311 2457787766432 12222221 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHhH---HHH
Q 048639 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS--ALDSESE---KLV 434 (1139)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts--~LD~~~~---~~i 434 (1139)
....... +.++.+ ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~---------~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQ---------AVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHH---------HHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhh---------hccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 1121111 112222 222334566788999998875 68889999999999999 9998544 667
Q ss_pred HHHHHHHc--CCCeEEEEecCccch
Q 048639 435 QEALERAM--QGRTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~--~~~tvi~itH~~~~~ 457 (1139)
.+.|+.+. .|+|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777663 389999999987654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-16 Score=178.36 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=109.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc--------CCCccEEEECCccCCCCC---------------HHHHhcceEEE---e
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY--------DPSNGDILIDSLNIKDLD---------------LKSLRKNIGAV---S 339 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~~~~i~~v---~ 339 (1139)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999887653 23566778888 7
Q ss_pred cCCCC-CcccHHHHHhcCCCCCCHHHHHHHHH-HhcHHHHHHhCCCCCCcccc-----ccCCCCChHHHHHHHHHHHHcc
Q 048639 340 QEPSL-FTGSLMDNIKVGNMDADDEQIYNASM-MANAHSFISQLPDQYSTELG-----QRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 340 Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~-~~~~~~~i~~l~~g~~t~i~-----~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|++.+ ++.++.||..++.|. .+..... .....+ -..+ ++.-+.++ +...+||||||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 577999999887542 2221110 000000 0001 01111111 1122699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 455 (1139)
+|+++ ||| ..+.+.++++..+.|++++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 667777777777899999999744
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-16 Score=168.57 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhcc----CC
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY----GN 986 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~----~~ 986 (1139)
.++|+++||+||||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 24677888887777777777531 11
Q ss_pred Cc-CCHHHHHHHHHHcCchHHHhhCC--CCccccccCCCCCCChHHHHHHHHH-HHhcCCCCEEEeeccc
Q 048639 987 EA-ASEAEIVEVSKKANIHDFISSLP--DGYDTVVGEKGCQLSGGQKQRIAIA-RTLLKRPAIMLLDEAT 1052 (1139)
Q Consensus 987 ~~-~sd~ei~~al~~~~l~~~i~~lp--~gldt~v~e~G~~LSgGQrQrlalA-RALlr~p~ILlLDEaT 1052 (1139)
+. ...+.+.+. +..++ +.+++++.+.+..+|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~~~---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGFQRL---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHHHHH---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHHHHH---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 11 222333333 22222 3477888999999999999999999 9999999999999984
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.5e-16 Score=174.04 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc--------cCCccEEEECCcccCCCC---------------hHHHhhhceEE---c
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY--------DPNEGIILIDGKGIKEYN---------------LRRLRSQIGLV---Q 968 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~--------~p~~G~I~idG~di~~~~---------------l~~lR~~i~~V---~ 968 (1139)
+.++|+|++|||||||++.|+|+. .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999998763 35678889988 7
Q ss_pred cccc-cccccHHHHhccCCCcCCHHHHHHHH-------HHcCchHHHh--hCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 969 QEPL-LFSCSIRNNICYGNEAASEAEIVEVS-------KKANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 969 Qdp~-LF~gTIreNL~~~~~~~sd~ei~~al-------~~~~l~~~i~--~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|++. .|+.++.||..++.|. .+.+.+ +...+...+. .+.+..+.. .++|+||+||.+.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEE
Confidence 8876 4788999999887542 222111 1112211111 011111111 1589999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
++.+|+++ ||| +.+.+.|++.. .+ .|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~---------~~-~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN---------AR-APVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC---------SS-SCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC---------CC-CeEEEecccC
Confidence 99999987 998 67777777653 23 4599999964
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-14 Score=149.83 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred ccccceeE-EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSL-SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+..+.++++..+ ..+.. .+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence 46777765 799999999999999999999999999 3333334443321 01111 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChH--HHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG--QKQRIAIARAIVKN-PPILLLDEATSALDS 428 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgG--qkqRi~lARal~~~-~~illlDEpts~LD~ 428 (1139)
..... ....++ ..+.+. ...+|++ |+|+++.+|+++.+ |+++++||||+.+|+
T Consensus 65 ~~~~~--~~~~~~------------~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEE------------ALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHH------------HHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHH------------HhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11100 011111 111110 1133444 46789999999986 999999999999997
Q ss_pred HhH--------HHHHHHHHHHcC--CCeEEEEecCcc-------------chhc-cCEEEEEeCc
Q 048639 429 ESE--------KLVQEALERAMQ--GRTVILIAHRMS-------------TIVN-ADMIAVVEDG 469 (1139)
Q Consensus 429 ~~~--------~~i~~~l~~~~~--~~tvi~itH~~~-------------~~~~-~d~i~~l~~G 469 (1139)
... ..+.+.|+++.+ +.|+|+++|... .+.. ||++++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 234444555433 889999999865 3444 9999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-15 Score=153.83 Aligned_cols=138 Identities=14% Similarity=0.030 Sum_probs=92.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA 989 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~ 989 (1139)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999987643221 1345788999775 4568888885421
Q ss_pred CHHHHHHHHHHcCchHHHhhCCC--Ccccc--ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPD--GYDTV--VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~--gldt~--v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~ 1065 (1139)
.. .. ..+-...++.... +++.. .+.....+|+|++|++++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 01 11 1111111111110 11110 12234579999999999999999999987 57777766766
Q ss_pred HHHh
Q 048639 1066 ALEA 1069 (1139)
Q Consensus 1066 ~l~~ 1069 (1139)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-14 Score=150.89 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=97.6
Q ss_pred cccccceeE-EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHH
Q 048639 901 VTVLNNFSL-QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 901 ~~vL~~vsl-~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
.+.|+++.. .+++|+.++|+||+|||||||+..+++ .+..+.+++++.+ ..+...+++..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~--------------- 66 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA--------------- 66 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH---------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH---------------
Confidence 356777776 799999999999999999999999999 4444555655433 12223332211
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH--HHHHHHHHHHhcCC-CCEEEeeccccCCC
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG--QKQRIAIARTLLKR-PAIMLLDEATSALD 1056 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG--QrQrlalARALlr~-p~ILlLDEaTS~LD 1056 (1139)
+. ++ ...+++ ++... +. ..|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 67 ~~--~~---~~~~~~---~~~~~---------------~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 67 ET--RG---LNPEEA---LSRFI---------------LF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HT--TT---CCHHHH---HHHEE---------------EE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred Hh--cC---CChHHH---hhcEE---------------EE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 00 00 111111 11110 11 12333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCch-------------hhh-cCCEEEEEeCC
Q 048639 1057 AESE--------RVIVSALEALNPKSSSCGELASRTTQITVAHRLA-------------TVI-NSDVIVVMDKG 1108 (1139)
Q Consensus 1057 ~~te--------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~-------------ti~-~~DrI~vl~~G 1108 (1139)
...+ ..+.+.|++.. ...+++ +|+++|... .+. .||+|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~-------~~~~~~-vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIA-------RKHNIP-VIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHH-------HHHTCC-EEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHH-------HHcCCE-EEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8543 23444455432 012344 999999765 333 49999999754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-13 Score=153.97 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc-cCCCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC-YGNEA 988 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~-~~~~~ 988 (1139)
.+++|+.++|+||+|||||||+..+.+... .|.+ +.|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 5766 34554321 2356777665432 22322221 121 2
Q ss_pred CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc--CCCHHHH---HHH
Q 048639 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS--ALDAESE---RVI 1063 (1139)
Q Consensus 989 ~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS--~LD~~te---~~I 1063 (1139)
..+++..++++...+.+. .+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l~~~-----------~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPL-----------IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEECCC-----------TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEEeec-----------CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 334445555555544321 2334457999998865 68889999999999999 9998655 666
Q ss_pred HHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1064 ~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.+.|++.. . ..++|||+|+|.....
T Consensus 160 ~~~L~~l~-------~-~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIA-------A-DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHH-------H-HHCCEEEEEEEC----
T ss_pred HHHHHHHH-------H-HcCCEEEEEecCCCcc
Confidence 66676543 0 2234599999987654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-15 Score=171.26 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=119.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHHh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~lR 961 (1139)
|+++|++++|. ...+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.+.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 45566777774 235899999999999999999999999999999999999999999999999986543 23467
Q ss_pred hhceEEcccccccc----------cc---HHHHhc--------------cCCCcCCHHHHHHHHHHcC------------
Q 048639 962 SQIGLVQQEPLLFS----------CS---IRNNIC--------------YGNEAASEAEIVEVSKKAN------------ 1002 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~----------gT---IreNL~--------------~~~~~~sd~ei~~al~~~~------------ 1002 (1139)
+++++++|+|.+|. || +++.+. +|- ..++..+. +.+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi-~~~~~~v~---~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV-GQSETAVA---DLTDFFLVLMLPGAGD 182 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS-SSCHHHHH---TTSSEEEEEECSCC--
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC-CcchhhHH---hhCCEEEEEEcCCCcc
Confidence 88999999998885 22 222210 010 00111111 1111
Q ss_pred ----chHHHhhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHhcC------CCCEEEeeccccCCCHHHHHHHHHHHHhh
Q 048639 1003 ----IHDFISSLPDGYD-TVVGE-KGCQLSGGQKQRIAIARTLLK------RPAIMLLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1003 ----l~~~i~~lp~gld-t~v~e-~G~~LSgGQrQrlalARALlr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
+...+...|+-+- +.+.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+.
T Consensus 183 ~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ----CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111111000 00110 113479999999999999998 688886 9999999999999999865
Q ss_pred C
Q 048639 1071 N 1071 (1139)
Q Consensus 1071 ~ 1071 (1139)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-15 Score=157.90 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA 360 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~ 360 (1139)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..+..++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 78899999997653211 01234678888654 3457888875421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCC--CCCcc--ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH
Q 048639 361 DDEQIYNASMMANAHSFISQLPD--QYSTE--LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~--g~~t~--i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~ 436 (1139)
... . ..+....++.+.. +++.. .+..+..+|+||+||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 0000000011100 01000 12344679999999999999999999876 58876666666
Q ss_pred HHHH
Q 048639 437 ALER 440 (1139)
Q Consensus 437 ~l~~ 440 (1139)
.+..
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-14 Score=177.25 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=105.5
Q ss_pred ccEEEEeEEEECCCC----CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccCCCChH
Q 048639 884 GRIEFQNIKFNYPSR----PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~----~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~~~l~ 958 (1139)
+.|.+++. ++|-- ++..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 34777764 34411 134689999999 99999999999999999999999997532 222 11111
Q ss_pred HHhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 959 RLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
-+.++++++| +|. -++.+|+.. | -+.+|+|+++. +.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~----------------------------~--------~stf~~e~~~~-~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS----------------------------G--------RSTFMVEMTET-ANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh----------------------------h--------hhhhhHHHHHH-HHHH
Confidence 1234555554 332 123333211 1 12467777654 4444
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHH-HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVI-VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
..+.+|+++||||||+++|+.....+ ++.++... ...++|+|++||.++....||++..+++|++..
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~--------~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA--------NKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH--------HTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHH--------hccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 56899999999999999888665554 55565543 012345999999998777788876677777643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-16 Score=162.36 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=94.0
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhc----CC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV----GN 357 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~----g~ 357 (1139)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.++.+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999875 4 14677888777777776666531 11
Q ss_pred CCC-CHHHHHHHHHHhcHHHHHHhCCCC--CCccccccCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 358 MDA-DDEQIYNASMMANAHSFISQLPDQ--YSTELGQRGVQLSGGQKQRIAIA-RAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 358 ~~~-~~~~~~~~~~~~~~~~~i~~l~~g--~~t~i~~~g~~LSgGqkqRi~lA-Ral~~~~~illlDEpts~LD~~~~~~ 433 (1139)
+.. .... +.+++..++.| +++.+.+++..+||||+||+++| |+++.++.++++|||...
T Consensus 80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-------- 142 (208)
T 3c8u_A 80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-------- 142 (208)
T ss_dssp GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------
T ss_pred CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH--------
Confidence 111 1111 12234444333 55677899999999999999998 888889888889998420
Q ss_pred HHHHHHHHcCCCeEEEEecCccc
Q 048639 434 VQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 434 i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
.+... -..+|++.+..+.
T Consensus 143 ---~l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 143 ---DLTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp ---GGGGT--CSEEEEECCCHHH
T ss_pred ---HHHHh--cCEEEEEeCCHHH
Confidence 01111 2367778877765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-13 Score=157.23 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=103.4
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHH--HhcceEEEecCCCCCc-c
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKS--LRKNIGAVSQEPSLFT-G 347 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~--~~~~i~~v~Q~~~l~~-~ 347 (1139)
-+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... +.. .|.+|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764421 122 3678999999987664 5
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc----ccc--CCCCChHHHHHHHHHHHHcc-CC-CEEEE
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL----GQR--GVQLSGGQKQRIAIARAIVK-NP-PILLL 419 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i----~~~--g~~LSgGqkqRi~lARal~~-~~-~illl 419 (1139)
++++|+.++... |+|..+ |.. -.+|-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899998764210 111111 110 01122233588999998754 45 46666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEec
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAH 452 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 452 (1139)
.+||++.|.... .+.+.+ .-+.|.|++||
T Consensus 419 LDattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 668888655422 111221 23789999999
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=142.38 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=91.2
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc--cccC-----CccEEEECCcccC-CCChHHHhhhceEEccccccccccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR--FYDP-----NEGIILIDGKGIK-EYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p-----~~G~I~idG~di~-~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
.|++|+.++|+||+|||||||+..|++ ..+| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 5789999987631 11233455667777664 4556
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHH-
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAE- 1058 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~- 1058 (1139)
+.+..+ .+.++..+. +.-+++++ .+|+++++||+|+.+|++
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 554321 222222222 11122222 589999999999999986
Q ss_pred ------HHH-----HHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-------------------h-cCCEEEEEeC
Q 048639 1059 ------SER-----VIVSALEALNPKSSSCGELASRTTQITVAHRLATV-------------------I-NSDVIVVMDK 1107 (1139)
Q Consensus 1059 ------te~-----~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti-------------------~-~~DrI~vl~~ 1107 (1139)
+++ .+.+.|.+.. . ..++|||+++|-.... . .||+|++|+.
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~-------~-~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLA-------D-EFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH-------H-HHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred cCCccHHHHHHHHHHHHHHHHHHH-------H-HcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 432 2333343322 0 1234599999955432 2 4899999986
Q ss_pred C
Q 048639 1108 G 1108 (1139)
Q Consensus 1108 G 1108 (1139)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-16 Score=164.86 Aligned_cols=171 Identities=17% Similarity=0.084 Sum_probs=107.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcCCHH
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEA 992 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ 992 (1139)
|+.++|+|+|||||||++++|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68899999999999999999987 5689999998765432 2467888876433 34777776421
Q ss_pred HHHHHHHHcCchHHHhhCCCCccccccCCCCCC--ChHHHHHHHHHH------HhcCCCCEEEeeccccCCCHHHHHHHH
Q 048639 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL--SGGQKQRIAIAR------TLLKRPAIMLLDEATSALDAESERVIV 1064 (1139)
Q Consensus 993 ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L--SgGQrQrlalAR------ALlr~p~ILlLDEaTS~LD~~te~~I~ 1064 (1139)
....+. .+....++.. .+-. .. +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. +
T Consensus 66 -~~~~~~-~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 66 -TVNFLL-AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -HHHHHH-TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -HHHHHh-cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 111111 1111011110 0000 00 000124 888888888887 8888888888884 799988777 7
Q ss_pred HHHHhhCCCCCCccccCCCeEEEEEecC-chhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1065 SALEALNPKSSSCGELASRTTQITVAHR-LATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1065 ~~l~~~~~~~~~~~~~~~~tTvI~IaHr-l~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+.+++.. ....|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 137 ~~~~~~~---------~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 137 EEFESKG---------IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHHTT---------CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHhhcC---------CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 7777653 223348889999 999887 99998 999999999988774
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-13 Score=143.45 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=89.0
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHh--ccCC-----CccEEEECCccCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVAR--FYDP-----SNGDILIDSLNIKD-LDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+.+++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 588999999999999999999999999 4555 57888888865211 1122344456665543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH-
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDSE- 429 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~~- 429 (1139)
+.+..+ .+.++..+. +.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 122221111 11111111 689999999999999985
Q ss_pred ------hH-----HHHHHHHHHHc--CCCeEEEEecCccc-------------------hh-ccCEEEEEeCc
Q 048639 430 ------SE-----KLVQEALERAM--QGRTVILIAHRMST-------------------IV-NADMIAVVEDG 469 (1139)
Q Consensus 430 ------~~-----~~i~~~l~~~~--~~~tvi~itH~~~~-------------------~~-~~d~i~~l~~G 469 (1139)
.+ ..+...+.++. .++|||+++|.... +. .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23344444432 38999999995543 22 48999999865
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-14 Score=139.16 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 35566664 245899999999999999999999999999999999999 9999999999887421 1111 2899
Q ss_pred cCCCCCcccHHHHHh-cC
Q 048639 340 QEPSLFTGSLMDNIK-VG 356 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~-~g 356 (1139)
|++.++.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999888779999985 44
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-15 Score=169.51 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=101.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChHHHh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~lR 961 (1139)
++++|+++.|. ...+|+++ +. ++|+.++|+|||||||||++++|+++++|.+|+|.++|.++... +...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45667776663 23578888 53 89999999999999999999999999999999999999887421 112345
Q ss_pred hhceEEc---------cccccc--c-----ccHHHHhccCCC---------cCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 962 SQIGLVQ---------QEPLLF--S-----CSIRNNICYGNE---------AASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 962 ~~i~~V~---------Qdp~LF--~-----gTIreNL~~~~~---------~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
+++++.+ |+|.++ . .|+++|+..+.. ..+..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5666644 999653 2 378888764210 11223444556666665432
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~p~ILl 1047 (1139)
...+|||||+|| |||+|+.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 124799999999 9999999999875
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-15 Score=155.24 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=106.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCHH
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMDADDE 363 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 363 (1139)
|++++|+||||||||||++.|++ |.+|.+.++|.++... ..+++++|.+... ..++++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 6789999988654321 2457777765332 23666666431
Q ss_pred HHHHHHHHhcHHHHHHh-CCCCCCcccc----ccCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHh
Q 048639 364 QIYNASMMANAHSFISQ-LPDQYSTELG----QRGVQL--SGGQKQRIAIAR------AIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 364 ~~~~~~~~~~~~~~i~~-l~~g~~t~i~----~~g~~L--SgGqkqRi~lAR------al~~~~~illlDEpts~LD~~~ 430 (1139)
+. ..... .+.=++...+ +....+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 66 -----~~-----~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 66 -----TV-----NFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----HH-----HHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----HH-----HHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 00 01110 0000011001 111234 889888888888 8888888888884 799987
Q ss_pred HHHHHHHHHHHc-CCCeEEEEecC-ccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 431 EKLVQEALERAM-QGRTVILIAHR-MSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 431 ~~~i~~~l~~~~-~~~tvi~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
... .+.+..+. .+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 766 77776654 36799999999 999876 99998 99999999988765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=151.49 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=102.2
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHH--HhhhceEEccccccc-ccc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRR--LRSQIGLVQQEPLLF-SCS 977 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~--lR~~i~~V~Qdp~LF-~gT 977 (1139)
+++||++++|++++|||+||||||||++.|.|++.|.+|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5688999999999999999999999999999999999999999988875431 222 477899999998655 568
Q ss_pred HHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC-C-CEEEeeccccCC
Q 048639 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR-P-AIMLLDEATSAL 1055 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~-p-~ILlLDEaTS~L 1055 (1139)
+++|+.++.. .+.+-.+-..++.+... .++-.--+|++.++|++... | .+|+..+||++.
T Consensus 364 V~e~l~~a~~-------------~~~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 364 IFDAIQAAKA-------------RNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHH-------------TTCSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHh-------------cCCCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 9999875421 11110111111111110 11222335788999987643 5 355455588775
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1056 D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
|.... .+.+++. .+-| .+++|| ++.
T Consensus 426 ~al~~---ak~f~~~----------~~it-gvIlTK-LD~ 450 (503)
T 2yhs_A 426 NAVSQ---AKLFHEA----------VGLT-GITLTK-LDG 450 (503)
T ss_dssp HHHHH---HHHHHHH----------TCCS-EEEEEC-GGG
T ss_pred HHHHH---HHHHHhh----------cCCC-EEEEEc-CCC
Confidence 54322 2223322 1234 889999 443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-14 Score=173.47 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=116.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccccccc--ccHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS--CSIR 979 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~--gTIr 979 (1139)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.|+|.+--.++- +..+++++|++. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876322221 345677777765 33 2566
Q ss_pred HHhccC---CC------cCCHHHHHHHHHHcCc-------------hHHHhh---CCCCcccccc-------CCCCCCCh
Q 048639 980 NNICYG---NE------AASEAEIVEVSKKANI-------------HDFISS---LPDGYDTVVG-------EKGCQLSG 1027 (1139)
Q Consensus 980 eNL~~~---~~------~~sd~ei~~al~~~~l-------------~~~i~~---lp~gldt~v~-------e~G~~LSg 1027 (1139)
+++... +| +.++.|...+++.++. .+.+.+ .|.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 554321 12 3455566666655421 122222 2223322221 12335799
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE--EecCchhhhc-CC
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT--VAHRLATVIN-SD 1100 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~--IaHrl~ti~~-~D 1100 (1139)
|||||.|+|. + | |+++|+++...+++.|.++. ..++|++. +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~---------~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD---------PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE---------TTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc---------ccCCEEEEcccHHHHHHHHHHcC
Confidence 9999988762 1 7 99999988877777666543 22334764 8999998865 54
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.29 E-value=7.7e-13 Score=149.42 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=83.3
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-CCccEEEEC-CccCCCCCHHHHhcceEEEecCCCCCcc-cH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-PSNGDILID-SLNIKDLDLKSLRKNIGAVSQEPSLFTG-SL 349 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti 349 (1139)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++++++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 75542 1345679999999998865 89
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+++-.. ....+++.+ ...++++.+ |+....+....+|| ||+||++||+++
T Consensus 279 ~e~~l~---~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGLW---HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCCC---CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhhc---CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 986332 233333322 122334444 44445566778999 999999999975
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-13 Score=156.32 Aligned_cols=177 Identities=12% Similarity=0.186 Sum_probs=115.0
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHHhc
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSLRK 333 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~ 333 (1139)
+++|+++.|+. ..+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++.... ....+.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34455566642 35899999999999999999999999999999999999999999999998874322 123467
Q ss_pred ceEEEecCCCCCcc-------------cHHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcH
Q 048639 334 NIGAVSQEPSLFTG-------------SLMDNIK-V---GNM---------DADDEQIYNASMM-------------ANA 374 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-------------ti~~ni~-~---g~~---------~~~~~~~~~~~~~-------------~~~ 374 (1139)
++++++|++.+|.. +++|.+. + +.+ ..+...+.+.+.. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988742 2233221 0 000 0011111000000 000
Q ss_pred HHHHHhCCCCCC-ccccc-cCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 048639 375 HSFISQLPDQYS-TELGQ-RGVQLSGGQKQRIAIARAIVK------NPPILLLDEATSALDSESEKLVQEALERA 441 (1139)
Q Consensus 375 ~~~i~~l~~g~~-t~i~~-~g~~LSgGqkqRi~lARal~~------~~~illlDEpts~LD~~~~~~i~~~l~~~ 441 (1139)
.+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. |||+|......+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111111000 11111 124579999999999999987 688887 9999999999998888764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-13 Score=136.62 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=72.4
Q ss_pred EeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEc
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~ 968 (1139)
+|++++|. +..+++++||+|++|+.++|+||+|||||||+++|.|++ |.+|+|.++|.++... ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566673 246899999999999999999999999999999999999 9999999999988531 1112 2899
Q ss_pred cccccccccHHHHhcc
Q 048639 969 QEPLLFSCSIRNNICY 984 (1139)
Q Consensus 969 Qdp~LF~gTIreNL~~ 984 (1139)
|++.+|.-|+.+|+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998887799999853
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-12 Score=145.31 Aligned_cols=75 Identities=31% Similarity=0.377 Sum_probs=67.7
Q ss_pred CCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEE
Q 048639 393 GVQLSGGQKQRI------AIARAIVKN-PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV 465 (1139)
Q Consensus 393 g~~LSgGqkqRi------~lARal~~~-~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~ 465 (1139)
...||||||||+ ++|||+..+ |+++||||||++||+.+...+.+.+.++.++.++|++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 668999999 9999999999999999999999999887666799999999986556999999
Q ss_pred Ee
Q 048639 466 VE 467 (1139)
Q Consensus 466 l~ 467 (1139)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.27 E-value=8.7e-13 Score=148.96 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=78.9
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEEC-CcccCCCChHHHhhhceEEccccccccc-cHH
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-PNEGIILID-GKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIR 979 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~id-G~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIr 979 (1139)
-++++++. .+|++++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+++++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999997 76643 2346789999999988865 888
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++-.. ..+.+++.+. ..++.+.+ |+....+....++| ||+||++||++++
T Consensus 280 e~~l~---~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW---HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC---CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc---CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 86332 2344444321 22222222 22222223345799 9999999999863
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-13 Score=148.65 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=97.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---hccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHhcC---
Q 048639 284 AGKMVALVGSSGCGKSTVISLVA---RFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG--- 356 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g--- 356 (1139)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999988776532 1234456777888776654 888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCCC-C------------CCccccccCCCCChHHHHHHHHHHHH-cc
Q 048639 357 ----------NMDADDEQIYNASMMANAHSFISQLPD-Q------------YSTELGQRGVQLSGGQKQRIAIARAI-VK 412 (1139)
Q Consensus 357 ----------~~~~~~~~~~~~~~~~~~~~~i~~l~~-g------------~~t~i~~~g~~LSgGqkqRi~lARal-~~ 412 (1139)
.+ ...++.. .+..+.. + ..-....+...||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~----------~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAE----------ALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHH----------HHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHH----------HHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 1111111 1111110 1 11112445668999 66 888 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHc
Q 048639 413 NPPILLLD----EATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 413 ~~~illlD----Epts~LD~~~~~~i~~~l~~~~ 442 (1139)
+|++++|| |||++||+.+...+.+.+..+.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999998888887654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-14 Score=168.92 Aligned_cols=174 Identities=13% Similarity=0.149 Sum_probs=115.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ 351 (1139)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47889999999999999999999999999999999999999999998865222211 345777777655221 26666
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHh-------------cHHHHHHhC---CCCCCcccc-------ccCCCCChH
Q 048639 352 NIKVG---NM------DADDEQIYNASMMA-------------NAHSFISQL---PDQYSTELG-------QRGVQLSGG 399 (1139)
Q Consensus 352 ni~~g---~~------~~~~~~~~~~~~~~-------------~~~~~i~~l---~~g~~t~i~-------~~g~~LSgG 399 (1139)
++... +| +.+..+...+.... .+.+.+.++ |.+....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 65432 22 23333333333222 123333332 223222111 234468999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEE--EecCccchhc-cC
Q 048639 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVIL--IAHRMSTIVN-AD 461 (1139)
Q Consensus 400 qkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~--itH~~~~~~~-~d 461 (1139)
||||.++|. + | |++||+.+.+.+.+.+.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999988752 1 6 999999877666666655543 788875 8999998764 54
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-14 Score=169.12 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=88.4
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHHHHhcceEEEe---------c
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLKSLRKNIGAVS---------Q 340 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~v~---------Q 340 (1139)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999988876421 1122344566655 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC--------CC-CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 341 EPSLF--T-----GSLMDNIKVGNM--------DA-DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 341 ~~~l~--~-----~ti~~ni~~g~~--------~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
+|.++ . .|+++|+.++.. .. +..+....+ ..+ |++.. ....+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL---------~~l--gl~~~--~~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRL---------RDM--GIEPF--LISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHH---------HHH--TCCHH--HHHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHH---------HHc--CCcHH--HHHHHHHHHHHHH-
Confidence 99763 2 388888875321 11 111222211 111 22221 1456899999999
Q ss_pred HHHHHHccCCCEEEE
Q 048639 405 AIARAIVKNPPILLL 419 (1139)
Q Consensus 405 ~lARal~~~~~illl 419 (1139)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-12 Score=144.88 Aligned_cols=138 Identities=21% Similarity=0.273 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-cccCCccEEEECCcccCCCChHHHhhhceEEcccccccc-ccHHHHhccCCCcCCHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLR-FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAE 993 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~e 993 (1139)
.+.|+||+|+||||+++++.+ ++.|..|.|.++|.+...... -+..+++++|++++.- .+ +.+ ......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-----DMG--NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-----hcC--CcchHH
Confidence 399999999999999999999 899999999999988764332 3678999999987531 11 011 111123
Q ss_pred HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCC
Q 048639 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073 (1139)
Q Consensus 994 i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~ 1073 (1139)
+.+.++.+.- . .+++..+ .||| +..+|+|+|+|||++ ||.++...+.+.+++..
T Consensus 109 ~~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-- 162 (354)
T 1sxj_E 109 IQELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-- 162 (354)
T ss_dssp HHHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--
Confidence 4443333211 1 1122111 4666 788999999999999 99999999999998743
Q ss_pred CCCccccCCCeEEEEEecCchhh
Q 048639 1074 SSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1074 ~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.++++|++||+++.+
T Consensus 163 --------~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 --------KNIRLIMVCDSMSPI 177 (354)
T ss_dssp --------TTEEEEEEESCSCSS
T ss_pred --------CCCEEEEEeCCHHHH
Confidence 346799999998754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-13 Score=145.80 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---ccccCCccEEEECCcccCCCChHHHhhhceEEcccccccc-ccHHHHhcc----
Q 048639 913 PGLKVALVGPSGAGKSSVLALLL---RFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICY---- 984 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~---rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~---- 984 (1139)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++. .++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556777788876554 478888743
Q ss_pred ---------CCCcCCHHHHHHHHH--HcCchHHHhhCCC-C-ccccccCCCCCCChHHHHHHHHHHHh-cCCCCEEEee-
Q 048639 985 ---------GNEAASEAEIVEVSK--KANIHDFISSLPD-G-YDTVVGEKGCQLSGGQKQRIAIARTL-LKRPAIMLLD- 1049 (1139)
Q Consensus 985 ---------~~~~~sd~ei~~al~--~~~l~~~i~~lp~-g-ldt~v~e~G~~LSgGQrQrlalARAL-lr~p~ILlLD- 1049 (1139)
+.+ .+.++.....+ ..++--+++ .|. - ++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 12222222211 111000000 000 0 00011222346888 55 888 9999999999
Q ss_pred ---ccccCCCHHHHHHHHHHHHhhC
Q 048639 1050 ---EATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1050 ---EaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
|||+++|..+.+.+++.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-12 Score=145.30 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=94.3
Q ss_pred EecCCCEEEEECCCCCcHHHHHHH--HHhccCCCcc-----EEEECCccCC-CCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISL--VARFYDPSNG-----DILIDSLNIK-DLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~--l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+.. ......+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4577776444 7888887631 1122334455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHh
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI--VKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal--~~~~~illlDEpts~LD~~~ 430 (1139)
+.+..+. ..++. .+.+.-++.+ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 11111 1111111111 24799999999999999753
Q ss_pred H------------HHHHHHHHHHc--CCCeEEEEecCc-------------------cchhc-cCEEEEEeCcE
Q 048639 431 E------------KLVQEALERAM--QGRTVILIAHRM-------------------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 431 ~------------~~i~~~l~~~~--~~~tvi~itH~~-------------------~~~~~-~d~i~~l~~G~ 470 (1139)
. ..+.+.|+++. .+.|||+|+|.. ..+.+ +|.++.|++++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 44566666653 389999999982 12344 89999998763
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=141.51 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=65.1
Q ss_pred CCCChHHHHHH------HHHHHhcCC-CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1023 CQLSGGQKQRI------AIARTLLKR-PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1023 ~~LSgGQrQrl------alARALlr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
..|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|++.. .++ +||+|||+++.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~-~vi~~th~~~~ 348 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK---------SIP-QMIIITHHREL 348 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC---------SCS-EEEEEESCGGG
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc---------cCC-eEEEEEChHHH
Confidence 47999999987 678999999 99999999999999999999999998753 233 49999999986
Q ss_pred hhcCCEEEEEe
Q 048639 1096 VINSDVIVVMD 1106 (1139)
Q Consensus 1096 i~~~DrI~vl~ 1106 (1139)
...||++++|+
T Consensus 349 ~~~~d~~~~l~ 359 (371)
T 3auy_A 349 EDVADVIINVK 359 (371)
T ss_dssp GGGCSEEEEEE
T ss_pred HhhCCEEEEEE
Confidence 55699999997
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-12 Score=141.23 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=95.6
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH----HHhc--ceEEEecCCCCCcc-cHHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK----SLRK--NIGAVSQEPSLFTG-SLMDNI 353 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~--~i~~v~Q~~~l~~~-ti~~ni 353 (1139)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++ .+.+++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2333 45699999888764 899998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCC--CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGV--QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~--~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~ 430 (1139)
.++.. . +++. .+...|. .-..=.++.-.++|++..++++++||.+|. .|.
T Consensus 205 ~~~~~-------------~-----------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~-- 257 (328)
T 3e70_C 205 QHAKA-------------R-----------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI-- 257 (328)
T ss_dssp HHHHH-------------H-----------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH--
T ss_pred HHHHh-------------c-----------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH--
Confidence 75310 0 1111 0111110 001112233358999998888888885554 332
Q ss_pred HHHHHHHHHHHc--CCCeEEEEecC
Q 048639 431 EKLVQEALERAM--QGRTVILIAHR 453 (1139)
Q Consensus 431 ~~~i~~~l~~~~--~~~tvi~itH~ 453 (1139)
.+.++.+. .+.|.|++||-
T Consensus 258 ----~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 ----VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ----HHHHHHHHHHSCCCEEEEECG
T ss_pred ----HHHHHHHHHhcCCCEEEEeCc
Confidence 22233222 37899999994
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=122.26 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 46 555544322110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2457899999999998 666557
Q ss_pred HHHHHHHHHHc-CCCe-EEEEecC
Q 048639 432 KLVQEALERAM-QGRT-VILIAHR 453 (1139)
Q Consensus 432 ~~i~~~l~~~~-~~~t-vi~itH~ 453 (1139)
+.+.+.+.... ++++ +|++||.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77888887654 4678 7777774
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.4e-13 Score=148.96 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=107.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH----HHhhhce--EEcccccccc-ccHHHHh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR----RLRSQIG--LVQQEPLLFS-CSIRNNI 982 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~----~lR~~i~--~V~Qdp~LF~-gTIreNL 982 (1139)
..++|+.++|||||||||||+++.|.|++.|.+|+|.++|.|+...... .++++++ +++|++.+++ .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999876533 3455555 8999987764 5888998
Q ss_pred ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHH
Q 048639 983 CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062 (1139)
Q Consensus 983 ~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~ 1062 (1139)
.++.. + +. +.+ =+||. |... .-..=-+++-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~-----------~--~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--- 259 (328)
T 3e70_C 205 QHAKA-----------R--GI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--- 259 (328)
T ss_dssp HHHHH-----------H--TC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---
T ss_pred HHHHh-----------c--cc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---
Confidence 64310 0 00 000 01211 1000 001112445569999999999999996665 23221
Q ss_pred HHHHHHhhCCCCCCccccCCCeEEEEEecCchhh----------hcCCEEEEEeCCEEE
Q 048639 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATV----------INSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1063 I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti----------~~~DrI~vl~~G~iv 1111 (1139)
+.+.+.+. .+. |+|++||--.+. ...-.|..+..|+-+
T Consensus 260 ~~~~~~~~----------~~i-t~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 QARQFNEA----------VKI-DGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHH----------SCC-CEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHh----------cCC-CEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 11223221 233 499999943321 113578888888765
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-12 Score=144.32 Aligned_cols=139 Identities=21% Similarity=0.260 Sum_probs=79.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHh-ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCHH
Q 048639 286 KMVALVGSSGCGKSTVISLVAR-FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMDADDE 363 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 363 (1139)
..+.|+||+|+||||+++.++| ++.|+.|.+.++|.+..... ..+..+++++|.+++. +.+- .+. ....
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 78999999999998765322 2256799999988652 1110 010 0111
Q ss_pred HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC
Q 048639 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443 (1139)
Q Consensus 364 ~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~ 443 (1139)
.+.+..+ ++.... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..+
T Consensus 108 ~~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 1211111 111111 111111 5676 788999999999999 999999999999988767
Q ss_pred CCeEEEEecCccch
Q 048639 444 GRTVILIAHRMSTI 457 (1139)
Q Consensus 444 ~~tvi~itH~~~~~ 457 (1139)
+.++|++||+++.+
T Consensus 164 ~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 164 NIRLIMVCDSMSPI 177 (354)
T ss_dssp TEEEEEEESCSCSS
T ss_pred CCEEEEEeCCHHHH
Confidence 88999999998754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=140.50 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=94.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHH--HhccccCCc-----cEEEECCccc-CCCChHHHhhhceEEccccccccccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLAL--LLRFYDPNE-----GIILIDGKGI-KEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
-|++|+.++|+||+|||||||+.. +.+..+++. +.|+||+.+. ....+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 456666543 4899999873 22223345567777666 56677
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHHH
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+..+ .+-++ +.+++.-+++++ .+|+++++||+|+.+|.+.
T Consensus 247 i~~~~~-~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 765432 11111 222222222222 4799999999999999764
Q ss_pred H------------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCch-------------------hhhc-CCEEEEEeC
Q 048639 1060 E------------RVIVSALEALNPKSSSCGELASRTTQITVAHRLA-------------------TVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1060 e------------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~-------------------ti~~-~DrI~vl~~ 1107 (1139)
. ..+.+.|+++. . ..++|||+|+|-.. .+.+ +|.+++|+.
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~la-------k-e~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLA-------D-QFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHH-------H-HHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred cCccchHHHHHHHHHHHHHHHHHH-------H-HcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 3 44556665543 1 12345999999732 2233 899999987
Q ss_pred CE
Q 048639 1108 GE 1109 (1139)
Q Consensus 1108 G~ 1109 (1139)
|+
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 63
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=120.60 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=37.1
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCccc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGI 952 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di 952 (1139)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 57766 8999999999999999999999999987 57 666666543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-13 Score=149.13 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=106.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccc-cccc-ccHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFS-CSIR 979 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp-~LF~-gTIr 979 (1139)
.+++++++.+++| ++|+||+|||||||+++|.+...+ |.|.++|.++........++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 79999999998777777888999999986 3332 3677
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccC-----
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA----- 1054 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~----- 1054 (1139)
||++...+...+.+. + ........ . -..|||||+||..+++|+..+|++| |||..-
T Consensus 110 Deid~~~~~r~~~~~-~-----~~~~~~~~-------~----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G-----ASVRVVNQ-------L----LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHH-------H----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-h-----HHHHHHHH-------H----HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888865332211110 0 01111111 1 1358999999999999999999985 999852
Q ss_pred -------CCHHHHHHHHHHHH
Q 048639 1055 -------LDAESERVIVSALE 1068 (1139)
Q Consensus 1055 -------LD~~te~~I~~~l~ 1068 (1139)
-|.+.+..|.+.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 35666666766653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-13 Score=151.22 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=103.7
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCC-CCCc-ccHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP-SLFT-GSLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~-~ti~ 350 (1139)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.|.++|.++........++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4889999999999 999999999999999999999887 79999999887665556677899999986 3443 3677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC------
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS------ 424 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts------ 424 (1139)
|||....+.....+. . .....+.+....|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-------------~----~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-------------G----ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-------------h----HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888764322111000 0 0111223334579999999999999999999985 99874
Q ss_pred ------CCCHHhHHHHHHHH
Q 048639 425 ------ALDSESEKLVQEAL 438 (1139)
Q Consensus 425 ------~LD~~~~~~i~~~l 438 (1139)
.-|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 22555555555544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=127.77 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM 358 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~ 358 (1139)
+|++++|+.++|+||+|||||||++++++.+.|.+|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 56788999999999999999999999999987766631 1111 11111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 048639 359 DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEKLVQEA 437 (1139)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~~i~~~ 437 (1139)
.+.... .... + ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 79 -------~~~~~~-----~~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111100 0110 0 000 0112245999999999996 8999998888888
Q ss_pred HHHHc-CCCeEEEEecCccc
Q 048639 438 LERAM-QGRTVILIAHRMST 456 (1139)
Q Consensus 438 l~~~~-~~~tvi~itH~~~~ 456 (1139)
+.... +++++|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87654 68999999998643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-12 Score=140.56 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHh-hhceEEcccccc------ccccHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLR-SQIGLVQQEPLL------FSCSIR 979 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR-~~i~~V~Qdp~L------F~gTIr 979 (1139)
++.+|+.++|+|+||||||||+++|. +.+|.+|+|.+ +|.++.... ..++ +++++|+|+|-+ ..-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44579999999999999999999999 99999999999 999887643 2223 379999999954 24578
Q ss_pred HHh--ccC---------C---C-cCCHHHHHHHHHHcCchH-HHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 980 NNI--CYG---------N---E-AASEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 980 eNL--~~~---------~---~-~~sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+ .++ . + ......+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 332 1 1 112356889999999875 443322 358998888899987
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-12 Score=147.55 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=97.3
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEe-------------------cCCCEEEEECCCCCcHHHHHHHHHhccC--CC
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSI-------------------PAGKMVALVGSSGCGKSTVISLVARFYD--PS 312 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i-------------------~~g~~~~ivG~sGsGKSTll~~l~g~~~--~~ 312 (1139)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999993 5899999988 8999999999999999999999999998 99
Q ss_pred ccEEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc
Q 048639 313 NGDILI---DSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388 (1139)
Q Consensus 313 ~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 388 (1139)
+|+|.+ ||.... . ..++.++++ |+..++. .++.+|+.+. ..+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~----------------------~~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFV----------------------SDLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHH----------------------HHHTTTCS-C
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHH----------------------HHHhCCCC-c
Confidence 999999 887642 2 345678888 7765543 3677766432 11111111 0
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 389 i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
+.....+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11111122222 333333355678999999999988774
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.9e-12 Score=139.78 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=75.2
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHh-cceEEEecCCCCC------cccH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLR-KNIGAVSQEPSLF------TGSL 349 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~-~~i~~v~Q~~~l~------~~ti 349 (1139)
+++.+|++++++||||||||||+++|+ +.+|++|+|.+ +|+++..... ..+ +.+||++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355679999999999999999999999 99999999999 9988765432 222 3699999999653 3478
Q ss_pred HHHH--hcCC------------C-CCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHHHHHH
Q 048639 350 MDNI--KVGN------------M-DADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 350 ~~ni--~~g~------------~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi~lAR 408 (1139)
||+ .|+. + ......+ .+.++.+ |+.. ........|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v---------~~~l~~~--~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAV---------KEAVKNG--EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHH---------HHHHHTT--SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHH---------HHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4431 0 0011122 2334433 3332 334456689999999999997
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-11 Score=137.26 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc
Q 048639 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 904 L~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~ 983 (1139)
-++++|+++.|+.|+|||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|++. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 4555555443 345777877651 1112333221
Q ss_pred cCC-----CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHH
Q 048639 984 YGN-----EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058 (1139)
Q Consensus 984 ~~~-----~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~ 1058 (1139)
+.. ...... ..+..+++.. .+.-+ |.. .+.-.+||+||+||.++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~~--lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTRV--LLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSSE--EEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHHh--hhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 1122222221 11111 110 122246999999999999999999999999 999997
Q ss_pred HHHH
Q 048639 1059 SERV 1062 (1139)
Q Consensus 1059 te~~ 1062 (1139)
....
T Consensus 283 ~~~~ 286 (416)
T 1udx_A 283 EEEA 286 (416)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 7633
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-13 Score=144.64 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh-ccc------------cCCccEEEECCcccCCCChHHHhhhceEEc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL-RFY------------DPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~~~l~~lR~~i~~V~ 968 (1139)
...+++||++++|+.+||+||||||||||+++|. +++ +|..|++ +|++....+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3578999999999999999999999999999999 998 5555544 4544443343333321 22
Q ss_pred cccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH-HHHH-HhcCCCCEE
Q 048639 969 QEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI-AIAR-TLLKRPAIM 1046 (1139)
Q Consensus 969 Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl-alAR-ALlr~p~IL 1046 (1139)
++.+++.+++..|+ ++.+ .+++.++++.... .+... .+. -...-++++ .-++ .++..|+..
T Consensus 90 ~~~~~~~~~~~~~~-~~~~---~~~i~~~~~~~~~--vild~------~~~-----g~~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVP---RKNLEDNVDKGVS--TLLVI------DWQ-----GAFKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TTCEEEEEEETTEE-EEEE---CTTHHHHHHHTCE--EEEEC------CHH-----HHHHHHHHSGGGEEEEEEECSCHH
T ss_pred cCceehhhhhcccc-CCCC---HHHHHHHHHcCCe--EEEEc------CHH-----HHHHHHHhcCCCeEEEEEECCcHH
Confidence 33334344444444 2222 2334444444221 11100 000 001123433 2222 346788888
Q ss_pred EeeccccCCCHHHHHHHHHHHHhh
Q 048639 1047 LLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1047 lLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
++||..++.|..+++.+++.|++.
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHC--------------CHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999998888777643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-10 Score=118.34 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=73.9
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCC
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE 987 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~ 987 (1139)
||.+++|+.++|+||+|+|||||++++.+.+.|.+|...+ ++ +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~~---------~~--------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------FF---------DT--------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------EE---------EH---------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------EE---------EH---------
Confidence 5678899999999999999999999999998766663110 10 11
Q ss_pred cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHHH
Q 048639 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVSA 1066 (1139)
Q Consensus 988 ~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~~ 1066 (1139)
.++.+.+... ... +. .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 76 ----~~~~~~~~~~-----~~~-----------~~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 76 ----KDLIFRLKHL-----MDE-----------GK--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHHHHH-----HHH-----------TC--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----hcC-----------ch--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1111111110 000 00 00 0112245999999999996 8999999999998
Q ss_pred HHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1067 LEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1067 l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
+++.. .+++++|++||+...
T Consensus 126 l~~~~---------~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRY---------NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHH---------HTTCEEEEECCCCSC
T ss_pred HHHHH---------HcCCCEEEEcCCChh
Confidence 87653 233458999997753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-11 Score=137.00 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=92.7
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~ 354 (1139)
-++++|+++.|+.++|+|+||||||||++.|+|..+ .+.+.+...+ ...+++|+|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 3444443322 235677776541 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048639 355 VGN-----MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429 (1139)
Q Consensus 355 ~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~ 429 (1139)
+.. ...... ..... ..++..+..+ +.. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~--era~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHI--ARTRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHH--TSSSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHH--HHHHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 11100 0000011111 100 234457999999999999999999999999 999997
Q ss_pred hHHHHHHHHHHHc-CCCeEEEEec
Q 048639 430 SEKLVQEALERAM-QGRTVILIAH 452 (1139)
Q Consensus 430 ~~~~i~~~l~~~~-~~~tvi~itH 452 (1139)
....+.+....+. .+.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6633333333332 3667777764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-13 Score=142.69 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=22.9
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHH-hccC
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-RFYD 310 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~-g~~~ 310 (1139)
...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3678999999999999999999999999999999 9984
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-11 Score=131.73 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=100.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---cCCccEEEE--------CCcccC-CCChHHHhhhceEEcccc------cccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY---DPNEGIILI--------DGKGIK-EYNLRRLRSQIGLVQQEP------LLFS 975 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~-~~~l~~lR~~i~~V~Qdp------~LF~ 975 (1139)
+.+|+|+|++||||||++++|.+.+ .++.|.|.. +|.++. .....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 678899887 788776 356678999999999987 4556
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccccc-CCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVG-EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~-e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS 1053 (1139)
.++.+++. ++++.+++..+..++.+.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67777753 46888899999999988776555554442 456667776 46677889999999988754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-11 Score=135.79 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=96.5
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEE-------------------eCCcEEEEEcCCCCCHHHHHHHHhcccc--CC
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQI-------------------EPGLKVALVGPSGAGKSSVLALLLRFYD--PN 941 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I-------------------~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p~ 941 (1139)
.+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45799999999992 5899999998 8999999999999999999999999998 99
Q ss_pred ccEEEE---CCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccc
Q 048639 942 EGIILI---DGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017 (1139)
Q Consensus 942 ~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~ 1017 (1139)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+.. . + ..-.+.+ ..| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~------~----l--~~~~~~i-~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS------D----L--KSGVPNV-TAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH------H----H--TTTCSCE-EEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH------H----H--hCCCCce-ecc-ccc--
Confidence 999999 998753 2456778999 765543 336666654310 0 0 0000000 012 111
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCH
Q 048639 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057 (1139)
Q Consensus 1018 v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~ 1057 (1139)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 2222 233333356678999999999887663
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-10 Score=129.25 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHhhhceEEccccc-------------
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLRSQIGLVQQEPL------------- 972 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~------------- 972 (1139)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 9999876542111246999999985
Q ss_pred ---cc-cccHHHHhccCCC---cCCHHHHHHHHHHcCch-HHHhhCC
Q 048639 973 ---LF-SCSIRNNICYGNE---AASEAEIVEVSKKANIH-DFISSLP 1011 (1139)
Q Consensus 973 ---LF-~gTIreNL~~~~~---~~sd~ei~~al~~~~l~-~~i~~lp 1011 (1139)
+| .-|+ +|+.++.- ...+..+.++++.++|. +..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 3477 88887421 12345789999999994 5555544
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-10 Score=128.93 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHhcceEEEecCCC-------------
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLRKNIGAVSQEPS------------- 343 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~------------- 343 (1139)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|+++.........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 8988765432111236999999985
Q ss_pred ---CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH
Q 048639 344 ---LFTG-SLMDNIKVGNM---DADDEQIYNASMMANA 374 (1139)
Q Consensus 344 ---l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~ 374 (1139)
+|+. |+ +|+.|+.. .....++.++++..++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence 3543 78 99988531 1123345555555544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-10 Score=126.67 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh---ccccCCccEEE--------ECCccc-CCCChHHHhhhceEEcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL---RFYDPNEGIIL--------IDGKGI-KEYNLRRLRSQIGLVQQ 969 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~~~l~~lR~~i~~V~Q 969 (1139)
+++++.+ ++|++|+|+|++||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 789999999999999999999999 99999999999 999998 45678899999999996
Q ss_pred c------cccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhh
Q 048639 970 E------PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISS 1009 (1139)
Q Consensus 970 d------p~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~ 1009 (1139)
+ ..++..++.+|+. .+++..+...+..++.+..
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHH
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHH
Confidence 5 4566778888874 2456666666666655544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-10 Score=124.09 Aligned_cols=98 Identities=14% Similarity=0.306 Sum_probs=73.8
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC
Q 048639 907 FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN 986 (1139)
Q Consensus 907 vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~ 986 (1139)
+++..++|+.++|+|++||||||++..|.+.+.+..|+|.+.+.|+... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 4556778999999999999999999999999999889999887765320 0 01
Q ss_pred CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH---HHHHHhcCCCCEEEeecccc
Q 048639 987 EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI---AIARTLLKRPAIMLLDEATS 1053 (1139)
Q Consensus 987 ~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl---alARALlr~p~ILlLDEaTS 1053 (1139)
+++...++..++. . + ...|+|+.|++ +++||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~gl~-----------~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGAT-----------V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTCE-----------E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCCc-----------E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2233333443331 1 1 13578999999 99999999999999999974
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.5e-10 Score=130.22 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=56.5
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
.+.++++.+ .++|+++||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 456666533 2479999999999 9999999999999999999999999999999999999876543
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=120.11 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=94.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
+.++++++.|+.. + ++++|+ +|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 1 678888 89999999999999999999999999999999999888765311110
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
++....+..++.- +|.+ ..-...+.||.+++++...++++
T Consensus 144 ---------------------------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 0001112222211 1111 11234456788999998899999
Q ss_pred EEeecc-ccCCCHHHHHHHHHHHHhh
Q 048639 1046 MLLDEA-TSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1046 LlLDEa-TS~LD~~te~~I~~~l~~~ 1070 (1139)
+|+||| |+++|...-..+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999998888887777654
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-11 Score=142.40 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=110.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc------------cccCCccEEEECCcccCCCCh-HHHhhhc---eEEcccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR------------FYDPNEGIILIDGKGIKEYNL-RRLRSQI---GLVQQEPLL 973 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r------------l~~p~~G~I~idG~di~~~~l-~~lR~~i---~~V~Qdp~L 973 (1139)
.+++|+++||||++|+|||||+++|.| ..+|..|.+.++|..+..+.- ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 678999999998854321100 0001112 355666665
Q ss_pred ccc-cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC--CEEEeec
Q 048639 974 FSC-SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP--AIMLLDE 1050 (1139)
Q Consensus 974 F~g-TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p--~ILlLDE 1050 (1139)
..+ |..+++ . .+....++.+..--++-..-+ |. ....+||+. +| +|+++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~~~--d~----~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRAFD--DA----EIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEECCC--TT----CSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhccc--cc----eeeeecccc------------Ccchhhhhchh
Confidence 543 222222 1 123333333321111111111 11 122345542 89 9999999
Q ss_pred cccCCCHHHHHHHHHHHHhh-CCCCCCccccCCCeEEEEEecCchhhhc-CCEEE-EEeCC-EEEEecChh
Q 048639 1051 ATSALDAESERVIVSALEAL-NPKSSSCGELASRTTQITVAHRLATVIN-SDVIV-VMDKG-EVVEMGSHS 1117 (1139)
Q Consensus 1051 aTS~LD~~te~~I~~~l~~~-~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~-vl~~G-~ive~G~~~ 1117 (1139)
+++..|.+..+..++.+++. . .+++|+ ++|.+..+.. ||+|. +|++| +++..|++.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~---------~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITS---------RGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC---------CSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---------hcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999988876 3 334434 3999998876 99999 99999 887666543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-10 Score=130.60 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~ 327 (1139)
.+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 389999999999 999999999999999999999999999999999999887544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-09 Score=118.01 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD 362 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 362 (1139)
++|++++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47899999999999999999999999988777 25677777763 2233333221
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
.+. ...+|. ... ..++..+.+|+++ .+|+++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~-------~~gl~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAE-------LLQAPL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHT-------TTTCCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHH-------hcCCCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 010 011221 111 1234567788865 999999999 99999877665555443332
Q ss_pred ---CCCeEEEE--ecCccchhc-cCEEEEEeCcEEEE
Q 048639 443 ---QGRTVILI--AHRMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 443 ---~~~tvi~i--tH~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
...+++++ +|..+.+.. ++++..++.+.++.
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 898777765 77666666677765
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=7e-09 Score=115.28 Aligned_cols=132 Identities=16% Similarity=0.083 Sum_probs=90.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4455666777421 1 678888 9999999999999999999999999999999999877665321000
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
+ ++.... + ...+ +-... +..-...+-+|.+|+++...++++
T Consensus 143 --------------~------------ql~~~~------~-~~~l----~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLG------E-KVGV----PVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHH------H-HHTC----CEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhc------c-cCCe----EEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 000000 0 0111 11110 112234456799999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 048639 417 LLLDEA-TSALDSESEKLVQEALERA 441 (1139)
Q Consensus 417 lllDEp-ts~LD~~~~~~i~~~l~~~ 441 (1139)
+|+|+| ++++|......+.+.....
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777776666554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-10 Score=126.61 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=56.9
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHhhhceEEcccccccc-----ccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLRSQIGLVQQEPLLFS-----CSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~LF~-----gTIreN 981 (1139)
++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... +.++..+++|+|.|-++. -|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 222333899999997654 467 88
Q ss_pred hccCCC-----------------cCCHHHHHHHHHHcCchHH
Q 048639 982 ICYGNE-----------------AASEAEIVEVSKKANIHDF 1006 (1139)
Q Consensus 982 L~~~~~-----------------~~sd~ei~~al~~~~l~~~ 1006 (1139)
|....+ ...+..+.++++..++.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 831111 1123468888888888653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-09 Score=120.20 Aligned_cols=111 Identities=15% Similarity=0.305 Sum_probs=76.3
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCC
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN 357 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~ 357 (1139)
++++.++|++++|+|++||||||++..|++.+.+..|+|.+.+.|... ....++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH-----
Confidence 345567899999999999999999999999999988888886654321 001111
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCCCCCHHhHHHH
Q 048639 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI---AIARAIVKNPPILLLDEATSALDSESEKLV 434 (1139)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi---~lARal~~~~~illlDEpts~LD~~~~~~i 434 (1139)
+.. +.+.+ |++. ...+|||+.|++ +|+||+..+|+++|+|+|.. .+....+
T Consensus 151 -------L~~---------~~~~~--gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 -------LKI---------WGERV--GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -------HHH---------HHHHH--TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -------HHH---------HHHHc--CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111 11111 1111 124689999999 99999999999999999974 3444444
Q ss_pred HHHHHH
Q 048639 435 QEALER 440 (1139)
Q Consensus 435 ~~~l~~ 440 (1139)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-09 Score=116.60 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=90.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCH
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd 991 (1139)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eq---------- 152 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQ---------- 152 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHH----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHH----------
Confidence 47999999999999999999999999988778 24666777763 2222222
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+....+..++ | -... .+ ++..+.+++++ ++++++|+| |+++|+..+..+.+..+-..
T Consensus 153 --L~~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 153 --LKTYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp --HHHHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred --HHHHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 2222222222 1 1111 12 34456777764 899999999 99999987776665443221
Q ss_pred CCCCCccccCCCeEEEEE--ecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1072 PKSSSCGELASRTTQITV--AHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1072 ~~~~~~~~~~~~tTvI~I--aHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+ .....+++++ +|..+.+.. +|++..++.|.++-
T Consensus 210 ~-------~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 F-------ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp C-------CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred h-------cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 0 0122235555 898777765 77666666677765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.7e-12 Score=143.89 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=109.5
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHh------------ccCCCccEEEECCccCCCCCH-HHHhcce---EEEecCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVAR------------FYDPSNGDILIDSLNIKDLDL-KSLRKNI---GAVSQEPSL 344 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g------------~~~~~~G~i~~~g~~~~~~~~-~~~~~~i---~~v~Q~~~l 344 (1139)
.+++|..++|+|++|+|||||+++|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567999999998853311100 0001222 467777776
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeC
Q 048639 345 FTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP--PILLLDE 421 (1139)
Q Consensus 345 ~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~--~illlDE 421 (1139)
..+ |..|++. .........+. .+..+-+..+ ......+||+. +| +++++||
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir~~d---~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVRAVD---AIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHTTCS---EEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHH--------HHHHHHHHHHH---HHHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 643 3333321 11111111110 0000000000 12333456553 89 9999999
Q ss_pred CCCCCCHHhHHHHHHHHHHH-cC-CCeEEEEecCccchhc-cCEEE-EEeCc-EEEEecChh
Q 048639 422 ATSALDSESEKLVQEALERA-MQ-GRTVILIAHRMSTIVN-ADMIA-VVEDG-QVTETGTHH 478 (1139)
Q Consensus 422 pts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 478 (1139)
|++.+|+...+...+.+... .+ |.|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999988888888776 44 5664 3999988876 99999 99999 887666543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-11 Score=135.19 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=91.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|++... .|.|.+++.++........++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3455555553 235899999999999 99999999999999999999985 7999999887654433344566888
Q ss_pred EecCCC-CCc-ccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 338 VSQEPS-LFT-GSLMDNIK-VGNMDAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 338 v~Q~~~-l~~-~ti~~ni~-~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++|++. .++ -++.||+. ++..... .++.. +.+..+. ..|||||+||+.+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~---------~~~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHH---------HHHHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888764 333 36778873 3321110 01111 1111111 2589999999999999
Q ss_pred HccCCCE
Q 048639 410 IVKNPPI 416 (1139)
Q Consensus 410 l~~~~~i 416 (1139)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-09 Score=115.36 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=55.2
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHh
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIK 354 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~ 354 (1139)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888777655444456789999999987754 5556554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-10 Score=123.93 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-----ccHHH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLRKNIGAVSQEPSLFT-----GSLMD 351 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~ti~~ 351 (1139)
+++.+|++++|+||||||||||+++|+|+..|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 887765432 122223899999997654 478 8
Q ss_pred HHh
Q 048639 352 NIK 354 (1139)
Q Consensus 352 ni~ 354 (1139)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-09 Score=115.26 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=88.6
Q ss_pred ccccce-eEEecCCCEEEEECCCCCcHHHHHHHH-HhccCCCccEEEECCccCCCCCHHHH---hcceEEEecCCCCCcc
Q 048639 273 LILKGF-SLSIPAGKMVALVGSSGCGKSTVISLV-ARFYDPSNGDILIDSLNIKDLDLKSL---RKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 273 ~~l~~i-s~~i~~g~~~~ivG~sGsGKSTll~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~i~~v~Q~~~l~~~ 347 (1139)
+.|+++ .--+++|++++|.||+|||||||+..+ .+..+...+.+++++.. +...+ ...+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 467776 667999999999999999999996554 44544444455555432 22222 2234554443210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~ 425 (1139)
.+|+.+..... . .+..++. ....+.+. +....+....++.++ .+|+++++|++++.
T Consensus 83 --~~~l~~~~~~~--~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDAFT--A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEECST--T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEecch--h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 00111100000 0 0000000 00001111 112333333344443 47999999999998
Q ss_pred C--CHHhHHHHHHHHHHH--cCCCeEEEEecCccc--------hh-ccCEEEEEeC
Q 048639 426 L--DSESEKLVQEALERA--MQGRTVILIAHRMST--------IV-NADMIAVVED 468 (1139)
Q Consensus 426 L--D~~~~~~i~~~l~~~--~~~~tvi~itH~~~~--------~~-~~d~i~~l~~ 468 (1139)
+ |+.....+...+.+. ..+.|+|+++|.... +. .||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 554444444444433 248899999997654 33 4899999974
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-10 Score=117.57 Aligned_cols=142 Identities=22% Similarity=0.218 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccC-----------CccEEEECCcccCC--CChHHHhhhceEEcccccccc--ccHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDP-----------NEGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFS--CSIRN 980 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--~~l~~lR~~i~~V~Qdp~LF~--gTIre 980 (1139)
+++|+|++|||||||++.+.+...+ ..|+|.+||.++.- ++....++..++++|...-.. -++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998755 57999999976532 222222333444444221000 01222
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD-TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+. .+.+++...++.. .+. .+.+.- -.++.. ..|..-..+...+||++.++|+++++| ||++|.+.
T Consensus 111 ~~~~----~s~~~~~~~~~~~--~~~---~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH----LTYENVERWLKEL--RDH---ADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH----HHHHTHHHHHHHH--HHH---SCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH----HHHHHHHHHHHHH--HHh---cCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 2111 0111111111110 000 000000 001111 012111123467899999999999999 99999999
Q ss_pred HHHHHHHHHh
Q 048639 1060 ERVIVSALEA 1069 (1139)
Q Consensus 1060 e~~I~~~l~~ 1069 (1139)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988864
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-10 Score=124.44 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=88.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCccEEEE--------CCccCCC-CCHHHHhcceEEEecCC------CCCc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY---DPSNGDILI--------DSLNIKD-LDLKSLRKNIGAVSQEP------SLFT 346 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~~~~i~~v~Q~~------~l~~ 346 (1139)
+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999887 788899887 6776653 34567888999999986 3344
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc-cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 048639 347 GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL-GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i-~~~g~~LSgGqkqRi~lARal~~~~~illlDEpt 423 (1139)
.++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 56667653 3455555555555555544333322222 2456667776 4666788899999998864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-11 Score=132.46 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=93.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|++... .|.+.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34556666563 235899999999999 99999999999999999999985 799999987764433334456678
Q ss_pred EEecCCC-CCc-ccHHHHH-hcCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 337 AVSQEPS-LFT-GSLMDNI-KVGNMDAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 337 ~v~Q~~~-l~~-~ti~~ni-~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+++|+.. ... -++.||+ .++..... .++.. +.+..+. ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~---------~~~~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHH---------HHHHHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEE
Confidence 8888753 333 3667777 34321100 01111 1111111 257899999999999
Q ss_pred HHccCCCEEEEeCCC
Q 048639 409 AIVKNPPILLLDEAT 423 (1139)
Q Consensus 409 al~~~~~illlDEpt 423 (1139)
|+..+|++ +|++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999976 55543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-11 Score=136.65 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=97.2
Q ss_pred eEEEECCCCCCCccccceeEEecCC-------CEEEEECCCCCcHHHHHHHHHhcc----CCCccEEEECCccCCCCCHH
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAG-------KMVALVGSSGCGKSTVISLVARFY----DPSNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g-------~~~~ivG~sGsGKSTll~~l~g~~----~~~~G~i~~~g~~~~~~~~~ 329 (1139)
+++..|+. ..+++++++.+++| +.++|+||+|+|||||+++|+|++ .|++|.+..++.++......
T Consensus 23 ~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 23 SLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred cHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 44445542 35899999999877 899999999999999999999998 67788777666554321111
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH-HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY-NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
..+..|.+++|...+.. ++.|++..........-+. .......+...+..+ ++.. ...+...||+|+|||++++
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~--~li~-at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF--TLVG-ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCC--EEEE-EESCGGGSCHHHHTTCSEE-
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCe--EEEE-ecCCcccCCHHHHHhcCce-
Confidence 11457999999887765 7777774211000000000 000000001111111 1111 2344568999999998655
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
.+||+.+...+.+.+++..
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888776643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-11 Score=136.39 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCC-------cEEEEEcCCCCCHHHHHHHHhccc----cCCccEEEECCcccCCCC
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPG-------LKVALVGPSGAGKSSVLALLLRFY----DPNEGIILIDGKGIKEYN 956 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~G-------e~vaIvG~sGSGKSTL~~lL~rl~----~p~~G~I~idG~di~~~~ 956 (1139)
.++++..|. ...+++++++.|++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..+.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 344555563 235899999999887 889999999999999999999998 677888877776654321
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCCcC----------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA----------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~----------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
....+..+.+|+|.+.++. ++.+++....... ....+...++..++. +..+. ...||
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li--------~at~~----~~~Ls 164 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV--------GATTR----SGLLS 164 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE--------EEESC----GGGSC
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE--------EecCC----cccCC
Confidence 1112456899999887765 7777774210000 001111111111110 11222 34799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhh
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
+|+|||++++ .+||+.+...+.+.|++.
T Consensus 165 ~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 165 SPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9999998655 778888888888888754
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-10 Score=129.58 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=98.9
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++........+++++.
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4566666663 235899999999999 99999999999999999999885 7999999988766555566778888
Q ss_pred Eccccc-cc-cccHHHHhcc-CCCcC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 967 VQQEPL-LF-SCSIRNNICY-GNEAA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 967 V~Qdp~-LF-~gTIreNL~~-~~~~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
++|++. .+ .-++.||++. +.... ..++..+.+. .++ ..|||||+|+..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEEE
Confidence 999864 33 3356777742 21110 1112222211 111 1378999999999999
Q ss_pred hcCCCCEEEeecccc
Q 048639 1039 LLKRPAIMLLDEATS 1053 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS 1053 (1139)
+..+|++ ||++..
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 687753
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-09 Score=110.94 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=69.1
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEccccccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC 976 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g 976 (1139)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||++..-++.+.+++.+ .|+.+++.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345799999999999999999999999986 67888 799999999999999876 699999999
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHH
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~ 1000 (1139)
++.+|. ||.+ .+.+.++++.
T Consensus 90 ~~~~n~-YGt~---~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGNM-FGTK---FETVHQIHKQ 109 (197)
T ss_dssp EETTEE-EEEE---HHHHHHHHHT
T ss_pred hhhcee-cccc---hhhHHHHHhc
Confidence 999995 7754 4556666554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-09 Score=119.30 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=63.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHH---hccCCCccEEE--------ECCccCC-CCCHHHHhcceEEEecC
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA---RFYDPSNGDIL--------IDSLNIK-DLDLKSLRKNIGAVSQE 341 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~~~~i~~v~Q~ 341 (1139)
++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++. ......+++.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 8999884 45677889999999965
Q ss_pred ------CCCCcccHHHHHh
Q 048639 342 ------PSLFTGSLMDNIK 354 (1139)
Q Consensus 342 ------~~l~~~ti~~ni~ 354 (1139)
.+++..++.+||.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 3456668888875
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-10 Score=130.45 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=97.8
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc--cccCCccEEEECCcccCCCChHHHhhhceEEccccccccccH-----
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLR--FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI----- 978 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTI----- 978 (1139)
.+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3778889999999999999999999998876 66667788888888888765554432 133321 11
Q ss_pred --HHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH----------HHHHHhcCCCC-E
Q 048639 979 --RNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI----------AIARTLLKRPA-I 1045 (1139)
Q Consensus 979 --reNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl----------alARALlr~p~-I 1045 (1139)
.+.|... ...-++-.+.++..|+.++- +|+..+. ..+|+||+|+. ++|+++-..|. +
T Consensus 231 ~a~~~L~~~--~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 231 DAANALRWC--VNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 1122110 00011122444555544321 1221111 13678887752 46778888898 8
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
+++||+++.+|.. ...+.+.|.+..... . .-+.++|++|||++
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~g----R-a~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKA----R-AAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHC----G-GGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHh----h-hCCcEEEEEecCCc
Confidence 9999999999843 233444443221000 0 22345999999998
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-09 Score=110.89 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=57.2
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc-cHHHHhc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNIC 983 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIreNL~ 983 (1139)
|+++++|+.+||+||||||||||+++|.++++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999973 588999888877666668889999999988754 4455543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-08 Score=125.60 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=76.3
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc--
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC-- 983 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~-- 983 (1139)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987655 67999 8999999999999999999999999999888888884
Q ss_pred cCCCcCCHHHHHHHHHHcCchHH
Q 048639 984 YGNEAASEAEIVEVSKKANIHDF 1006 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~ 1006 (1139)
+|..+.. .++..+++.+...-+
T Consensus 82 pG~~~f~-~~~~~~l~~ad~~il 103 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALEAADAALV 103 (665)
T ss_dssp CCSGGGH-HHHHHHHHHCSEEEE
T ss_pred CCccchH-HHHHHHHhhcCcEEE
Confidence 4433222 455666665554433
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-08 Score=111.98 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=85.9
Q ss_pred cccceeE--EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE-ECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 048639 274 ILKGFSL--SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL-IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM 350 (1139)
Q Consensus 274 ~l~~is~--~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 350 (1139)
-|+.+-= -+++|+++.|.||+|||||||+..++.......|.+. ++... ..+. ...+++++.+|+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~--------- 115 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS--------- 115 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG---------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH---------
Confidence 4554322 5789999999999999999998888876554444433 32211 0010 011111111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCC--
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN--PPILLLDEATSAL-- 426 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~--~~illlDEpts~L-- 426 (1139)
+.+ -. ..++ .|-+.+++++.++ |+++++|++++.+
T Consensus 116 --l~i----------------------------------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 116 --LLV----------------------------------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPR 154 (349)
T ss_dssp --CEE----------------------------------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCH
T ss_pred --eEE----------------------------------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcch
Confidence 100 00 0122 2345578888755 9999999999998
Q ss_pred --------CH---HhHHHHHHHHHHH----c-CCCeEEEEecCcc----------------chhc-cCEEEEEeCcEEEE
Q 048639 427 --------DS---ESEKLVQEALERA----M-QGRTVILIAHRMS----------------TIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 427 --------D~---~~~~~i~~~l~~~----~-~~~tvi~itH~~~----------------~~~~-~d~i~~l~~G~i~~ 473 (1139)
|+ ...+.+.+.++++ . .++|+|+++|-.. .+.+ ||.++.++.+++..
T Consensus 155 ~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp HHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee
Confidence 33 1222333444333 2 3899999999543 1444 89989888877665
Q ss_pred ecC
Q 048639 474 TGT 476 (1139)
Q Consensus 474 ~g~ 476 (1139)
.|+
T Consensus 235 ~g~ 237 (349)
T 2zr9_A 235 DGT 237 (349)
T ss_dssp SSS
T ss_pred cCc
Confidence 443
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-08 Score=109.64 Aligned_cols=169 Identities=18% Similarity=0.158 Sum_probs=90.9
Q ss_pred ccccce-eEEEeCCcEEEEEcCCCCCHHHHHH-HHhccccCCccEEEECCcccCCCChHHHh---hhceEEccccccccc
Q 048639 902 TVLNNF-SLQIEPGLKVALVGPSGAGKSSVLA-LLLRFYDPNEGIILIDGKGIKEYNLRRLR---SQIGLVQQEPLLFSC 976 (1139)
Q Consensus 902 ~vL~~v-sl~I~~Ge~vaIvG~sGSGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~l~~lR---~~i~~V~Qdp~LF~g 976 (1139)
+.|+.+ .--+++|+.++|+||+||||||++. ++....+...+.+++++.. +...++ +++++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 456666 6679999999999999999999965 4455555444556666533 233333 3466666653210
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~ 1054 (1139)
.|+...+. .. +.+ + ..+. .+..+.+. +....+....++.++ .+|+++++|++|+-
T Consensus 84 ---~~l~~~~~-~~-~~~-------~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 84 ---GMFAMVDA-FT-AGI-------G------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ---TSEEEEEC-ST-TTT-------C------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ---CcEEEEec-ch-hhc-------c------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 12221100 00 000 0 0000 00000011 112334444455554 47999999999998
Q ss_pred C--CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh--------h-hcCCEEEEEeC
Q 048639 1055 L--DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT--------V-INSDVIVVMDK 1107 (1139)
Q Consensus 1055 L--D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t--------i-~~~DrI~vl~~ 1107 (1139)
+ |+.........+.+.. . ..++|||+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~-------~-~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVL-------A-GTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHH-------H-HTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHH-------H-HCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 5433333333333322 0 223459999997664 2 34899999964
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.9e-10 Score=117.26 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=51.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL------- 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~------- 328 (1139)
.|+++|++..|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865442 1 566666 8999999999999999999999999999999999998843322
Q ss_pred -HHHhcceEEEecC
Q 048639 329 -KSLRKNIGAVSQE 341 (1139)
Q Consensus 329 -~~~~~~i~~v~Q~ 341 (1139)
...+.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235689999984
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-10 Score=125.75 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=99.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
.+++++...|. ...+++++++++++| ++|+||+|+|||||++++.+... .|.|.++|.++........+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45667777673 235899999999999 99999999999999999999875 799999998876655556677788
Q ss_pred EEccccc-cc-cccHHHHhc-cCCCcC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 966 LVQQEPL-LF-SCSIRNNIC-YGNEAA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 966 ~V~Qdp~-LF-~gTIreNL~-~~~~~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
.++|+.. .+ .-++.||++ ++.... ..++..+.+ ..++ ..|||||+|+..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEE
Confidence 8888864 22 335667774 221100 111222211 1111 137899999999999
Q ss_pred HhcCCCCEEEeeccccC
Q 048639 1038 TLLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~ 1054 (1139)
|+..+|++ ||++.-.
T Consensus 159 a~t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 159 AATNRPDI--LDPALLR 173 (254)
T ss_dssp EEESCGGG--SCGGGGS
T ss_pred EccCCchh--CCHHHcC
Confidence 99999987 7887653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-09 Score=111.05 Aligned_cols=141 Identities=22% Similarity=0.178 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCC-----------CccEEEECCccCCC--CCHHHHhcceEEEecCCCCCc--ccHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDP-----------SNGDILIDSLNIKD--LDLKSLRKNIGAVSQEPSLFT--GSLMD 351 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~--~ti~~ 351 (1139)
+++|+|++|||||||++.+.|...+ ++|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976421 111111112223322110000 01111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCC-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQ-LPDQYS-TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~ 429 (1139)
+... .+.+.+.... +.+.. -+...- ..++.+ ..|..-.++...+||+++.+|+++++| ||++|..
T Consensus 111 ~~~~----~s~~~~~~~~------~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWL------KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHH------HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHH------HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1100 0011111101 01111 111100 112222 122222234578899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 048639 430 SEKLVQEALER 440 (1139)
Q Consensus 430 ~~~~i~~~l~~ 440 (1139)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98888887754
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-09 Score=126.25 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=93.8
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHh--ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVAR--FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~ 354 (1139)
.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|++.. +|.+|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~- 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDM- 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCH-
Confidence 4788999999999999999999999999886 6667778887766665543322221 1133321 111111
Q ss_pred cCCCCCCHHHHHHHHHH-----hcHHHHHHhCCCCCCccccc---cCCCCChHHHHHH----------HHHHHHccCCC-
Q 048639 355 VGNMDADDEQIYNASMM-----ANAHSFISQLPDQYSTELGQ---RGVQLSGGQKQRI----------AIARAIVKNPP- 415 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~-----~~~~~~i~~l~~g~~t~i~~---~g~~LSgGqkqRi----------~lARal~~~~~- 415 (1139)
++..+++.. ..-.+.+... |....-+- ....+||||+||. ++|+++...|.
T Consensus 230 --------~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 230 --------KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 111111110 0001223333 22221111 1135788988763 46777888898
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH----c-CCCeEEEEecCcc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERA----M-QGRTVILIAHRMS 455 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~itH~~~ 455 (1139)
++++||+++.+|... ..+.+.+..+ + .|.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999887432 3344444332 2 2779999999998
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=108.45 Aligned_cols=148 Identities=21% Similarity=0.319 Sum_probs=84.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE-EEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA 988 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~ 988 (1139)
-+++|+.+.|.||+|||||||+..+..-.....|. +++|.... .+. ...+++++-+|+..++ .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-----------~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-----------Q-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE-----------C--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe-----------c--
Confidence 58899999999999999999988777554433343 44554321 111 1223333322221100 0
Q ss_pred CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccccCC----------C
Q 048639 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR--PAIMLLDEATSAL----------D 1056 (1139)
Q Consensus 989 ~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~--p~ILlLDEaTS~L----------D 1056 (1139)
| .+. .|.+.++++++++ |+++|+||+|+-+ |
T Consensus 121 ----------------------~-------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 ----------------------P-------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------------C-------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------------C-------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 111 2345678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch----------------hhh-cCCEEEEEeCCEEEEecC
Q 048639 1057 A---ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA----------------TVI-NSDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1057 ~---~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~----------------ti~-~~DrI~vl~~G~ive~G~ 1115 (1139)
+ ...+.+.+.++++... ..+.++|||+++|-.. .+. .||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~-----a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGA-----LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-----HHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHH-----HHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1112334444432100 0022345999999443 133 489999998877665554
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-08 Score=116.42 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEEECCccCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DILIDSLNIKDLDLKSLRKNI-GAVSQEPSLFTGSLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~ti~ 350 (1139)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 478888888999999999999999999999999998776555 56554432 2333333221 100000 0 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDS 428 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~ 428 (1139)
+.+..|. .++++....... .+.+...| -.+.+ ...+|++|.+ +.||.+. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g~--l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTGK--LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTSC--CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcCC--CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1222232 233333222211 12233322 12222 3479999886 5677776 58999999999998753
Q ss_pred H--------hHHHHHHHHHHHc--CCCeEEEEec---------C--cc--------chhc-cCEEEEEeCcEE
Q 048639 429 E--------SEKLVQEALERAM--QGRTVILIAH---------R--MS--------TIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 429 ~--------~~~~i~~~l~~~~--~~~tvi~itH---------~--~~--------~~~~-~d~i~~l~~G~i 471 (1139)
. ....+.+.|+.+. .+.+||+++| + +. .+.+ ||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 1234555566553 2889999999 2 32 3444 999999987654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-08 Score=105.17 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEE----------ECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIIL----------IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999863 344443 57888888888888774 678999999999999
Q ss_pred hccCCCcCCHHHHHHHHHH
Q 048639 982 ICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~ 1000 (1139)
.++. +.+.+.++++.
T Consensus 81 -~yg~---~~~~i~~~l~~ 95 (180)
T 1kgd_A 81 -MYGT---KLETIRKIHEQ 95 (180)
T ss_dssp -EEEE---EHHHHHHHHHT
T ss_pred -cccc---cHHHHHHHHHC
Confidence 4553 35566666653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.4e-09 Score=131.59 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=102.7
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc-cEEEECCccCCCCCHHHHhcceEEEecCC--------
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-GDILIDSLNIKDLDLKSLRKNIGAVSQEP-------- 342 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-------- 342 (1139)
..+++++++.+++|+.++|+||+|||||||+++|++++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999987 8888888765543 34688887754
Q ss_pred --------------CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 343 --------------SLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 343 --------------~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
|.+. .++.+|+..++.......+... ......+.+..+. . -......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~----~-~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR----H-DPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC----C-CCC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE----e-chhhcCCccccccccccCc
Confidence 2222 2455555443211000000000 0000111121111 0 0112245999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALER 440 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~ 440 (1139)
+....++.+|+|||.-. |++.....+.+.|..
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 788888888777754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-09 Score=114.55 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=51.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL------- 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l------- 957 (1139)
.|+++|+...|. . ++++.+ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888866541 1 466666 8999999999999999999999999999999999999844322
Q ss_pred -HHHhhhceEEccc
Q 048639 958 -RRLRSQIGLVQQE 970 (1139)
Q Consensus 958 -~~lR~~i~~V~Qd 970 (1139)
..++.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346778999985
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-09 Score=123.52 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=88.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- +.. .+.++..++++||...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ecc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 6777651 111 122344588999987653 344
Q ss_pred hccCCC---cC---C----HHHHHHHHHH---cCchHHHhhCCCCcc-----ccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 982 ICYGNE---AA---S----EAEIVEVSKK---ANIHDFISSLPDGYD-----TVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 982 L~~~~~---~~---s----d~ei~~al~~---~~l~~~i~~lp~gld-----t~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++...+ .. . +..+.+.+.- +.+. ...|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443221 00 0 1222333220 0000 00011111 0223344568999999999998899999
Q ss_pred CEEE-eecccc
Q 048639 1044 AIML-LDEATS 1053 (1139)
Q Consensus 1044 ~ILl-LDEaTS 1053 (1139)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-08 Score=105.71 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=61.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccC-------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYD-------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT 346 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 346 (1139)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+...++.+..++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 67787 799998888888888765 58889999
Q ss_pred ccHHHHHhcCCC
Q 048639 347 GSLMDNIKVGNM 358 (1139)
Q Consensus 347 ~ti~~ni~~g~~ 358 (1139)
+++.+| .+|.+
T Consensus 89 ~~~~~n-~YGt~ 99 (197)
T 3ney_A 89 GSYQGN-MFGTK 99 (197)
T ss_dssp EEETTE-EEEEE
T ss_pred hhhhce-ecccc
Confidence 999999 48854
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-08 Score=115.95 Aligned_cols=172 Identities=12% Similarity=0.149 Sum_probs=107.3
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhc-----eEEcccccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQI-----GLVQQEPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i-----~~V~Qdp~LF~ 975 (1139)
+.|+++..-+++|+.+.|.||+|+||||++..+.+...+..| .+.+-+.+ ++...+++++ ++-+|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHH------
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHH------
Confidence 578888888999999999999999999999999988766445 56654433 4556665553 22222
Q ss_pred ccHHHHhccCCCcCCHHHH---HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeec
Q 048639 976 CSIRNNICYGNEAASEAEI---VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDE 1050 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei---~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDE 1050 (1139)
++.-| ..++++. .++++.. ...| -.+.+ ...+|.+|.+ +.+|++. .+|+++|+|+
T Consensus 262 -----~l~~g--~l~~~~~~~~~~a~~~l------~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 262 -----NLRTG--KLTPEDWGKLTMAMGSL------SNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp -----HHHTS--CCCHHHHHHHHHHHHHH------HSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred -----HHhcC--CCCHHHHHHHHHHHHHH------hcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 12112 2344433 3333322 1111 11112 1358999876 6677776 5799999999
Q ss_pred cccCCCHH-----HH---HHHHHHHHhhCCCCCCccccCCCeEEEEEec-----------Cch--------hhh-cCCEE
Q 048639 1051 ATSALDAE-----SE---RVIVSALEALNPKSSSCGELASRTTQITVAH-----------RLA--------TVI-NSDVI 1102 (1139)
Q Consensus 1051 aTS~LD~~-----te---~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH-----------rl~--------ti~-~~DrI 1102 (1139)
++.-.+.. .. ..+.+.|+.+. ...+++ ||+++| |+. .+. +||.|
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA-------ke~~i~-vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALA-------RELEVP-VIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHH-------HHHTCC-EEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHH-------HHhCCe-EEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 99987532 12 34455555432 012444 999999 132 344 49999
Q ss_pred EEEeCCEE
Q 048639 1103 VVMDKGEV 1110 (1139)
Q Consensus 1103 ~vl~~G~i 1110 (1139)
++|..++.
T Consensus 394 i~l~r~~~ 401 (454)
T 2r6a_A 394 AFLYRDDY 401 (454)
T ss_dssp EEEEETTC
T ss_pred EEEecccc
Confidence 99987654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.4e-09 Score=127.21 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=102.8
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-cEEEECCcccCCCChHHHhhhceEEccccc-------
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE-GIILIDGKGIKEYNLRRLRSQIGLVQQEPL------- 972 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~-G~I~idG~di~~~~l~~lR~~i~~V~Qdp~------- 972 (1139)
..+++++++.+++|+.++|+||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8899988776543 345788877541
Q ss_pred ---------------cc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 973 ---------------LF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 973 ---------------LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
.| ..++.+|+...+.......+... ......+++.. ++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCc
Confidence 11 12333343322100000000000 00001111111 11111 11134899999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~ 1069 (1139)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 899999999999985
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-08 Score=106.00 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=45.1
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccC
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG 985 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 985 (1139)
++--++++|+.++|+|++||||||+++.|.+.++ .+.+++||++++++ +|+..+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3445688899999999999999999999999874 37899999999876 676554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.8e-09 Score=121.72 Aligned_cols=137 Identities=13% Similarity=0.162 Sum_probs=87.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
.+++++++.+++|+.++|+||+|||||||+++|+|.+ +|.+..-+ ... +.++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 4899999999999999999999999999999999964 68776511 111 12233478888887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHhC---------CCCCC-----ccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 353 IKVGNM---DA-DDEQIYNASMMANAHSFISQL---------PDQYS-----TELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 353 i~~g~~---~~-~~~~~~~~~~~~~~~~~i~~l---------~~g~~-----t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+..... .. ....+. ....+.+.+... |+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000010 111122233210 00000 1244566779999999999998999999
Q ss_pred CEEE-EeCCCC
Q 048639 415 PILL-LDEATS 424 (1139)
Q Consensus 415 ~ill-lDEpts 424 (1139)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=7.5e-08 Score=119.02 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=97.9
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhc-
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV- 355 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~- 355 (1139)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987765 67988 78888888888888899999999998887777777752
Q ss_pred -CCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHH
Q 048639 356 -GNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434 (1139)
Q Consensus 356 -g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i 434 (1139)
|..+. ..+ ..+-.-..+..++++| |+.++|+.+...+
T Consensus 82 pG~~~f-~~~----------------------------------------~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGE----------------------------------------IRGALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHH----------------------------------------HHHHHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHH----------------------------------------HHHHHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 22110 000 0111113466788888 9999999888655
Q ss_pred HHHHHHHcCCCeEEEEecCccch
Q 048639 435 QEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
..+. . .+.++|++.|+++..
T Consensus 120 ~~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-H--TTCCEEEEEECGGGC
T ss_pred HHHH-H--ccCCEEEEecCCchh
Confidence 4433 2 478899999988764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.1e-08 Score=103.04 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDIL----------IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~----------~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
.+|++++|+||||||||||+++|.+.+++ ..|.|. ++|.++...+.+.+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 445553 35666555666666543 45777788888888
Q ss_pred HHhcCC
Q 048639 352 NIKVGN 357 (1139)
Q Consensus 352 ni~~g~ 357 (1139)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 5664
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.7e-08 Score=100.07 Aligned_cols=138 Identities=24% Similarity=0.296 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----cC------CccEEEECCcccC----CC-ChHHHhhhceEEccccc--c--cc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY-----DP------NEGIILIDGKGIK----EY-NLRRLRSQIGLVQQEPL--L--FS 975 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~-----~p------~~G~I~idG~di~----~~-~l~~lR~~i~~V~Qdp~--L--F~ 975 (1139)
+++|+|++|||||||++.|.+.. .| ..|+|.+||.++. +. +.+.+|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 69999999999999999999973 23 3678999997652 11 22233333333333321 1 22
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccC
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD-TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~ 1054 (1139)
.+-.. +.+++...++.. .+. .+.+.- -.++..- .|..-.......||++.++|+++++| ||+
T Consensus 87 ~~~~~---------s~~~~~~~~~~~--~~~---~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLKEL--RDH---ADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCHH---------HHHTHHHHHHHH--HHH---SCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHH---------HHHHHHHHHHHH--HHh---cCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeC
Confidence 22111 111111111110 000 000000 0011110 01100011234589999999999999 999
Q ss_pred CCHHHHHHHHHHHHhh
Q 048639 1055 LDAESERVIVSALEAL 1070 (1139)
Q Consensus 1055 LD~~te~~I~~~l~~~ 1070 (1139)
+|...-..+.+.|.+.
T Consensus 150 l~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999988888877643
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.8e-07 Score=104.68 Aligned_cols=113 Identities=24% Similarity=0.322 Sum_probs=75.8
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
.++++++++++| +.|+||+|+|||||++++++.... .+-++ +..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHHHHH
Confidence 677788888888 889999999999999999986421 01111 000000
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC---------
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS--------- 424 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts--------- 424 (1139)
.. .+| .|++++|-.+++|....|.||++||+-+
T Consensus 87 -------------------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 87 -------------------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -------------------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -------------------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00 011 2688999999999999999999999943
Q ss_pred -CCCHHhHHHHHHHHHHH-----cCCCeEEEEecCccch
Q 048639 425 -ALDSESEKLVQEALERA-----MQGRTVILIAHRMSTI 457 (1139)
Q Consensus 425 -~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~~~~~ 457 (1139)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666555555555443 1356888899998655
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-07 Score=96.75 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=63.6
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc--ccCCCChH----HHhhhceEEccccc------
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK--GIKEYNLR----RLRSQIGLVQQEPL------ 972 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~--di~~~~l~----~lR~~i~~V~Qdp~------ 972 (1139)
+++++++.+| .++|+|+||||||||+.+|..+..+..|...-.+. ++-..+.. ..+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988777665433221 11111100 23457899999862
Q ss_pred ----cccccHHHH----hccCCCcCCHHHHHHHHHHcCch
Q 048639 973 ----LFSCSIRNN----ICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 973 ----LF~gTIreN----L~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
.+..++..+ +.......+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 111122111 11111235678898888888774
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-07 Score=96.34 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~ 440 (1139)
...||+++.+|+++++| |||+|......+.+.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999988877777654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-07 Score=97.29 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=51.6
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccccc-----------cccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLL-----------FSCS 977 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~L-----------F~gT 977 (1139)
++|++|+.++|+|++||||||++++|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977555 222 11222111 1122347778877643 3344
Q ss_pred HHHHhccCCCcCCHHHHHHHHHH
Q 048639 978 IRNNICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~ 1000 (1139)
++.|+ ++ ...+++.++++.
T Consensus 78 ~~~~~-~g---~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG---TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE---EEHHHHHHHHHT
T ss_pred ECCee-cC---CCHHHHHHHHHc
Confidence 45552 33 235566666543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-07 Score=102.44 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=35.9
Q ss_pred cEEEEeE-EEECCCCCCcccccceeEEEeC---CcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 885 RIEFQNI-KFNYPSRPEVTVLNNFSLQIEP---GLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 885 ~I~~~nv-sf~Y~~~~~~~vL~~vsl~I~~---Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.++++|| +++|.+ +.++|+|+||+|++ |++|+|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34799999999999 9999999999999999999999855
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-07 Score=102.12 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=36.2
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEecC---CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 256 NIDIRDV-CFAYPSRPDQLILKGFSLSIPA---GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 256 ~i~~~~v-~~~y~~~~~~~~l~~is~~i~~---g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++++|+ +|+|++ +.++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35699999999999 9999999999999999999999865
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-07 Score=97.46 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG 356 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g 356 (1139)
=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++ +|+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3567899999999999999999999999874 37899999988875 566554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-07 Score=97.47 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=43.0
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 4667899999999999999999999999987 9999999776421 1112234677777643
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.1e-08 Score=115.38 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=91.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC-CCcc-cHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS-LFTG-SLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-l~~~-ti~ 350 (1139)
.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.+.......+++..++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999 99999999999999999999975 7899999988866544444566778888864 3333 566
Q ss_pred HHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 048639 351 DNIK-VGNMDA-----DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424 (1139)
Q Consensus 351 ~ni~-~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts 424 (1139)
|+|. ++.... ..++..+.. ...+. .|||||+|+..+++|...+|++ |||+.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 7773 332111 112111111 11221 3788999999999999999988 899876
Q ss_pred C
Q 048639 425 A 425 (1139)
Q Consensus 425 ~ 425 (1139)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.5e-08 Score=100.36 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=46.8
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE--EECCcccC
Q 048639 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII--LIDGKGIK 953 (1139)
Q Consensus 890 nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I--~idG~di~ 953 (1139)
|++..+. ...+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 2346788889999999999999999999999999999987 77988 99987665
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4.9e-07 Score=103.80 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=34.8
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc--cccCCccEEEECC
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR--FYDPNEGIILIDG 949 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p~~G~I~idG 949 (1139)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47999999998 999999999999999999999 6777777665433
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-07 Score=95.17 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=46.0
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-HhhhceEEccccccc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQIGLVQQEPLLF 974 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i~~V~Qdp~LF 974 (1139)
.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+...++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 3667889999999999999999999999987 899999988753 222 234678999986544
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.1e-07 Score=102.96 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh--ccCCCccEEEE
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR--FYDPSNGDILI 318 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~~~G~i~~ 318 (1139)
.+|++++++++ .++|||++|||||||++.|.| ++++.+|.+.-
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 48999999998 999999999999999999999 66777776643
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=100.49 Aligned_cols=143 Identities=13% Similarity=0.222 Sum_probs=83.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC-----------CCccEEEECCccCCCCCHHHHhcceEEEecCCCC----CcccHH-
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD-----------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSL----FTGSLM- 350 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l----~~~ti~- 350 (1139)
.++|+|++|||||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999865 67799999986542 22345666664431 111211
Q ss_pred ----HHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHHHHHH----HHH-ccCCCEEE
Q 048639 351 ----DNIKVGN-MDADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQRIAIA----RAI-VKNPPILL 418 (1139)
Q Consensus 351 ----~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqRi~lA----Ral-~~~~~ill 418 (1139)
|++.+.- .........+... ...+.+..+ ++.---.++.+...+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1222210 0111100111111 112233332 11111234566667898899988887 766 445554
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHH
Q 048639 419 LDEATSALDSESEKLVQEALERA 441 (1139)
Q Consensus 419 lDEpts~LD~~~~~~i~~~l~~~ 441 (1139)
+|+|++|......+.+.|.+.
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888877654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.5e-06 Score=99.07 Aligned_cols=119 Identities=23% Similarity=0.376 Sum_probs=76.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
..++++++.+++| +.|+||+|+|||||++++.+.... |+ +.-+..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~-- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGS-- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGG--
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHH--
Confidence 3677888888888 999999999999999999984310 10 000000
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc--------
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS-------- 1053 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS-------- 1053 (1139)
+++... +| .+++++|-.+++|....|.||++||+.+
T Consensus 84 -----------------------~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 84 -----------------------DFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp -----------------------GTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred -----------------------HHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 010000 11 2678899999999999999999999944
Q ss_pred --CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1054 --ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1054 --~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.|.+.++.+.+.+...-+- ....+..||..||+.+.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~-----~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGF-----DSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHS-----CGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhcc-----CCCCCEEEEEecCChhhh
Confidence 56766666666666543100 002345689999998654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.7e-08 Score=100.27 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=46.4
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE--EECCccCC
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI--LIDSLNIK 324 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i--~~~g~~~~ 324 (1139)
|++..+. .....+..++..++|++++|+|||||||||++++|++.+. ..|.+ .+||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 3457788999999999999999999999999999999987 77988 88876553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=100.36 Aligned_cols=138 Identities=18% Similarity=0.264 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc-----------CCccEEEECCcccCCCChHHHhhhceEEcccccc----ccccHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD-----------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLL----FSCSIRN 980 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~L----F~gTIre 980 (1139)
+|+|+|++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 67799999997653 22346666665431 22232 2
Q ss_pred Hhcc----------CCCcC-CHHH---HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH----HHh-cC
Q 048639 981 NICY----------GNEAA-SEAE---IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA----RTL-LK 1041 (1139)
Q Consensus 981 NL~~----------~~~~~-sd~e---i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA----RAL-lr 1041 (1139)
.+.- .++.. .++. +.+.++..++. ..| --.|......+|+|++|++.++ +++ ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 2211 11100 1122 23334333321 111 1122334445788888888877 666 44
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+|++ +|||++|.+.-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 4554 8999999999988888887643
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-07 Score=95.52 Aligned_cols=82 Identities=24% Similarity=0.270 Sum_probs=61.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEE----------ECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIIL----------IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 467777777888877765 6788888888887
Q ss_pred HhccCCCcCCHHHHHHHHHH
Q 048639 981 NICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~ 1000 (1139)
| .||. +.+.+.+.++.
T Consensus 83 ~-~yg~---~~~~i~~~l~~ 98 (208)
T 3tau_A 83 N-YYGT---PLEYVEEKLAA 98 (208)
T ss_dssp E-EEEE---EHHHHHHHHHT
T ss_pred c-cCCC---cHHHHHHHHHc
Confidence 7 3553 34555555543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-07 Score=111.21 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=64.2
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEE-ECCcccCC-------CCh---HHHhhhceEEccccccccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IIL-IDGKGIKE-------YNL---RRLRSQIGLVQQEPLLFSC 976 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------~~l---~~lR~~i~~V~Qdp~LF~g 976 (1139)
..+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.. ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999887 784 99977642 122 23456789999973
Q ss_pred cHHHHhccCC---C-cCCHHHHHHHHHHcC
Q 048639 977 SIRNNICYGN---E-AASEAEIVEVSKKAN 1002 (1139)
Q Consensus 977 TIreNL~~~~---~-~~sd~ei~~al~~~~ 1002 (1139)
+..+|+.+.. + ....++..++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 3445554321 1 223456777788766
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-07 Score=100.25 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh----HHH-----hhhceEE-cccc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL----RRL-----RSQIGLV-QQEP 971 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l----~~l-----R~~i~~V-~Qdp 971 (1139)
+++++||++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +.++.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3567888899999999999999999999999999999999999999888865431 334 5668888 5653
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.12 E-value=7.4e-07 Score=99.82 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=55.3
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH----HHH-----hcceEEE-ecCC
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL----KSL-----RKNIGAV-SQEP 342 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~-----~~~i~~v-~Q~~ 342 (1139)
++++++|++++|++++++|++||||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3467888899999999999999999999999999999999999998887754321 233 5678888 6654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.5e-07 Score=92.58 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=25.1
Q ss_pred ECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 894 NYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 894 ~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|+..+..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466556668999999999999999999999999999999999876
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.8e-07 Score=93.30 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=39.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
+++++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 111 11111111 111234778887653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-07 Score=110.92 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=93.6
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++++...|. +..+++++++++++| +.|+||+|+|||||++++.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4455555453 224799999999999 99999999999999999999875 7899999999877666666777888
Q ss_pred Eccccc-ccc-ccHHHHhccCCCcC------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 967 VQQEPL-LFS-CSIRNNICYGNEAA------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 967 V~Qdp~-LF~-gTIreNL~~~~~~~------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
++|+.. .+. -.+.|+++...+.. ..++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888864 222 24567775321110 12222222211 111 256777777777777
Q ss_pred hcCCCCEEEeeccccC
Q 048639 1039 LLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~ 1054 (1139)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 7777776 6777653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-06 Score=91.97 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=25.2
Q ss_pred ECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 265 ~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+|+.++..++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999876
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-06 Score=97.19 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=46.5
Q ss_pred cccceeE--EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE-EECCccCCCCCHHHHhcceEEEecCC
Q 048639 274 ILKGFSL--SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI-LIDSLNIKDLDLKSLRKNIGAVSQEP 342 (1139)
Q Consensus 274 ~l~~is~--~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~~ 342 (1139)
.|+.+-= -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ . .+.+++++.+|+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--P-VYAKNLGVDLKSL 116 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--H-HHHHHHTCCGGGC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--h-HHHHHcCCchhhh
Confidence 4554422 488999999999999999999999999988877865 566543221 1 2344566665543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-06 Score=104.52 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHcC-CCeEEE-EecCccchhc
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEKLVQEALERAMQ-GRTVIL-IAHRMSTIVN 459 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~~~~~~~ 459 (1139)
..-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+..... .+++++ .||+.+.+..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 45688999999999999999999999999997 8998776666666655554 456666 4898776643
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-06 Score=90.07 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc--cCCCCCH----HHHhcceEEEecCCC
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL--NIKDLDL----KSLRKNIGAVSQEPS 343 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~--~~~~~~~----~~~~~~i~~v~Q~~~ 343 (1139)
+++++++.+| +++|+||||||||||+++|.+.+.+..|...-.+. ++-.... ...+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7899999999 99999999999999999999998887765433221 1111110 012457999999863
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4e-07 Score=97.45 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=50.6
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC------ChHH----HhhhceEEcccccccc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY------NLRR----LRSQIGLVQQEPLLFS 975 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------~l~~----lR~~i~~V~Qdp~LF~ 975 (1139)
+.+.++|+.++|+|++||||||++++|.++ .|+|.++|.|.... .+.. .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345578999999999999999999999998 78999999886432 2221 2567899999887654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.8e-06 Score=94.90 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE-EECCcccCCCChHHHhhhceEEcccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-LIDGKGIKEYNLRRLRSQIGLVQQEPLL 973 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I-~idG~di~~~~l~~lR~~i~~V~Qdp~L 973 (1139)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+... ....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhh
Confidence 488999999999999999999999999988777765 777764332 2355678887776543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-06 Score=98.09 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=50.7
Q ss_pred ccccEEEEeEEEECCCCCCccccc--------------ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLN--------------NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~--------------~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+|.|.|+||++.||. +..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678999999999985 356888 8999999999999999999999999999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-05 Score=92.04 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEe--cCc
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLD-EATSALDSESEKLVQEALERAMQGRTVILIA--HRM 454 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~~ 454 (1139)
...+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 4468999999887 66666788889999 9999999988777777776655578888888 554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-06 Score=89.04 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch---hccCEEEEEe
Q 048639 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI---VNADMIAVVE 467 (1139)
Q Consensus 396 LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~---~~~d~i~~l~ 467 (1139)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998888644333 3345666655555555432 356888888877553 4599998885
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=100.75 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE-EecCchhhhc
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVSALEALNPKSSSCGELASRTTQIT-VAHRLATVIN 1098 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~-IaHrl~ti~~ 1098 (1139)
-+|.|+.+|..++++++.+++++|+|||.. ++|.+.-..+.+.+.+.. .+..++++ .||..+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------PDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------TTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------CCceEEEEeccccHHHHHH
Confidence 578999999999999999999999999997 899877666666665544 33444555 5898776654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=89.34 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=79.2
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 57776667999999999999999999999988866533222 23443322
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~ 433 (1139)
.+.+++...+... ...++. + .+- . ..||++++||++.|...+.++++++.|+|...+| .
T Consensus 84 ------ms~~ql~~Rlls~-----~~~v~~--~-~l~-~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~ 142 (338)
T 4a1f_A 84 ------MSAEQLALRALSD-----LTSINM--H-DLE-S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----Q 142 (338)
T ss_dssp ------SCHHHHHHHHHHH-----HHCCCH--H-HHH-H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----H
T ss_pred ------CCHHHHHHHHHHH-----hhCCCH--H-HHh-c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----H
Confidence 2233333222111 111110 0 010 1 2699999999999999999999999999865433 3
Q ss_pred HHHHHHHH--cC-CCeEEEEec
Q 048639 434 VQEALERA--MQ-GRTVILIAH 452 (1139)
Q Consensus 434 i~~~l~~~--~~-~~tvi~itH 452 (1139)
+...++.+ .. +..+|+|-|
T Consensus 143 i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEec
Confidence 33333332 12 567777755
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.1e-05 Score=90.00 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=77.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHH
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEI 994 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei 994 (1139)
-+++++|++|+|||||++.|.+.. + .+++.+..+.+ ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 479999999999999999998864 2 22222222111 11222222210
Q ss_pred HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEee-ccccCCCHHHHHHHHHHHHhhCCC
Q 048639 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD-EATSALDAESERVIVSALEALNPK 1073 (1139)
Q Consensus 995 ~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLD-EaTS~LD~~te~~I~~~l~~~~~~ 1073 (1139)
...+.| .|+-.+. ....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..
T Consensus 215 -----~~~l~D----t~G~~~~----~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-- 278 (357)
T 2e87_A 215 -----RYQIID----TPGLLDR----PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-- 278 (357)
T ss_dssp -----EEEEEE----CTTTSSS----CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--
T ss_pred -----eEEEEe----CCCcccc----chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--
Confidence 011111 1322221 22358999999887 66666788899999 9999999998888888777654
Q ss_pred CCCccccCCCeEEEEEe--cCch
Q 048639 1074 SSSCGELASRTTQITVA--HRLA 1094 (1139)
Q Consensus 1074 ~~~~~~~~~~tTvI~Ia--Hrl~ 1094 (1139)
.+.. +|+|. |++.
T Consensus 279 -------~~~p-iilV~NK~Dl~ 293 (357)
T 2e87_A 279 -------KDLP-FLVVINKIDVA 293 (357)
T ss_dssp -------TTSC-EEEEECCTTTC
T ss_pred -------CCCC-EEEEEECcccC
Confidence 2334 78888 7664
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=8.7e-06 Score=85.29 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
.+||+|++||||||+.+.|.++ |...+|+ +.+.+.+. ..+. +.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~-----------------~~~~-----~~~~ 48 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV-----------------AKDS-----PLLS 48 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT-----------------CSSC-----HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc-----------------cCCh-----HHHH
Confidence 5999999999999999999983 5555654 22221111 0010 1122
Q ss_pred HHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCC
Q 048639 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075 (1139)
Q Consensus 996 ~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~ 1075 (1139)
+..+..|. . .-.+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.++..
T Consensus 49 ~i~~~~g~-----------------~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----- 103 (206)
T 1jjv_A 49 KIVEHFGA-----------------Q-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----- 103 (206)
T ss_dssp HHHHHHCT-----------------T-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHhCH-----------------H-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----
Confidence 22222111 1 113678999999999998888654433 3456777777777766532
Q ss_pred CccccCCCeEEEEEecCchhh---hcCCEEEEEeC
Q 048639 1076 SCGELASRTTQITVAHRLATV---INSDVIVVMDK 1107 (1139)
Q Consensus 1076 ~~~~~~~~tTvI~IaHrl~ti---~~~DrI~vl~~ 1107 (1139)
.+. ++|+-+|.+... ..||++++++.
T Consensus 104 -----~~~-~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 -----TAP-YTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CSS-EEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred -----CCC-EEEEEechhhhcCcHhhCCEEEEEEC
Confidence 223 477778877654 45999999863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-06 Score=88.74 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=27.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-06 Score=94.96 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCccEEEEeEEEECCCCCCCcccc--------------ceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILK--------------GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~--------------~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..+.+.|+|+++.||. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|.+...
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3467999999999985 456888 9999999999999999999999999999999763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=1.3e-05 Score=90.38 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999988754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=1.7e-05 Score=80.69 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=42.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh-hceEEcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS-QIGLVQQEP 971 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~i~~V~Qdp 971 (1139)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 468999999999999999999999876 889999877753 222333 467777653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.69 E-value=2.4e-06 Score=102.42 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEE-ECCccC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DIL-IDSLNI 323 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~-~~g~~~ 323 (1139)
..+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 36789999999999999999999999999999987 785 888654
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.2e-05 Score=83.80 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=40.0
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~ 327 (1139)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35689999999999999999999999999988999988776654433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.67 E-value=5.8e-05 Score=87.26 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 964 (1139)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ |+..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3345566667422 1 567787 89999999999999999999999999999999999888876543322 2210
Q ss_pred eEEccccccccccHHHHhccC--CCcCCHHHH-HHHHHHcCchHHHhhCCCCccccccCCCCCCC---hHHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSCSIRNNICYG--NEAASEAEI-VEVSKKANIHDFISSLPDGYDTVVGEKGCQLS---GGQKQRIAIART 1038 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~--~~~~sd~ei-~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS---gGQrQrlalARA 1038 (1139)
+ -+.|+++. .+..+..++ .++++.+. .+++|..+-+.+..++ .-..++..++++
T Consensus 149 ~------------~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 G------------EKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp H------------HHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred c------------ccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 0 01122211 111233344 33333320 1345544433322232 345677788888
Q ss_pred hcCCCCEEEeeccccCCCHH
Q 048639 1039 LLKRPAIMLLDEATSALDAE 1058 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~ 1058 (1139)
+.-++-+|++| ++++.|..
T Consensus 209 ~~pd~vlLVvD-a~tgq~av 227 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEAL 227 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHH
T ss_pred cCCceEEEEEe-ccchHHHH
Confidence 86666788888 45555443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.4e-05 Score=83.49 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=41.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
..++|+.++|+|++||||||+++.|.+++++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999998889999888777655544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00011 Score=84.97 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-H---hcc-
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-L---RKN- 334 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~---~~~- 334 (1139)
+++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ + ++.
T Consensus 80 ~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~ 152 (425)
T 2ffh_A 80 EALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV 152 (425)
T ss_dssp HHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC
Confidence 3455556422 1 567777 89999999999999999999999999999999999877764422211 1 111
Q ss_pred -eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhC-CCCCCccccccCCCC---ChHHHHHHHHHHH
Q 048639 335 -IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL-PDQYSTELGQRGVQL---SGGQKQRIAIARA 409 (1139)
Q Consensus 335 -i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~i~~~g~~L---SgGqkqRi~lARa 409 (1139)
+-+++.. +..+..++.. +.++.+ ..++|..+=+.+..+ ..-..+...++++
T Consensus 153 gv~v~~~~----------------~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 153 GVPVLEVM----------------DGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp TCCEEECC----------------TTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred CccEEecC----------------CCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 1111111 1122233311 122222 235665443333233 2346677788888
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEec
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAH 452 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 452 (1139)
+..++-++++| ++++.|.... + +.+... -+.+-|++|+
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 87676777787 5566554322 1 222221 2456677776
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.6e-05 Score=86.73 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc-cC------CccEEEECCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY-DP------NEGIILIDGK 950 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-~p------~~G~I~idG~ 950 (1139)
-+++|+.+.|.||+||||||++..+..-. .| ..+.++|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2344666654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.62 E-value=6.5e-05 Score=86.97 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
++.+++++|++||||||++..|++.+.+..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 57799999999999999999999999888777766443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.6e-05 Score=88.50 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=36.0
Q ss_pred ccccceeEEecCCC------EEEEECCCCCcHHHHHHHHHhccC--CCccEE
Q 048639 273 LILKGFSLSIPAGK------MVALVGSSGCGKSTVISLVARFYD--PSNGDI 316 (1139)
Q Consensus 273 ~~l~~is~~i~~g~------~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i 316 (1139)
..|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 36777777777766 999999999999999999999987 455553
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.4e-05 Score=83.45 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=46.5
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC------CHHH----HhcceEEEecCCCCC
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL------DLKS----LRKNIGAVSQEPSLF 345 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~------~~~~----~~~~i~~v~Q~~~l~ 345 (1139)
-+.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 3445679999999999999999999999998 78899988765321 1111 134567777765443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.54 E-value=1.8e-05 Score=88.16 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=37.6
Q ss_pred ccccceeEEEeCCc------EEEEEcCCCCCHHHHHHHHhcccc--CCccEEEE
Q 048639 902 TVLNNFSLQIEPGL------KVALVGPSGAGKSSVLALLLRFYD--PNEGIILI 947 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge------~vaIvG~sGSGKSTL~~lL~rl~~--p~~G~I~i 947 (1139)
+.|++++..+.+++ .+||+|+|||||||+++.|.++++ |.+|.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 46777887887776 899999999999999999999987 45565433
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=81.92 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc----CCCeEEEEecCccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM----QGRTVILIAHRMST 456 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~ 456 (1139)
.+|.++++||+... |......+.+.+.... .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 8777777766664432 36688889998754
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=4.3e-05 Score=77.62 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=33.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~ 324 (1139)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999976 88899886654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00018 Score=80.70 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=68.0
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
+.|+.+.--+++|+.+.|.||+|+||||++.-++.-.....+.+.+ |+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~--------------------------fSl----- 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV--------------------------FSL----- 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE--------------------------EES-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE--------------------------EeC-----
Confidence 4577776679999999999999999999998887654322222222 111
Q ss_pred hccCCCcCCHHHHHHH----HHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCC
Q 048639 982 ICYGNEAASEAEIVEV----SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~a----l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD 1056 (1139)
+.+.+++..- ...+.+..+.. | .||.+++||++.|...+.++++.|.|+|+.++|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~~-------------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLES-------------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHHH-------------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHhc-------------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1233333222 12222222211 1 588999999999988888889999998876544
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0001 Score=85.33 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999988889988666654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=4.8e-05 Score=89.34 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=44.9
Q ss_pred CCCEEEeeccccCCCH-HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc-hhhhc-CCEEEE-EeCCEEEEecChh
Q 048639 1042 RPAIMLLDEATSALDA-ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL-ATVIN-SDVIVV-MDKGEVVEMGSHS 1117 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~-~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl-~ti~~-~DrI~v-l~~G~ive~G~~~ 1117 (1139)
++++|++||+..-.+. .+...+...+.+.. ..++.+|+.+|+. ..+.. .+++.- ++.|.+++.+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---------~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---------DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---------TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---------HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999987765 67777878877654 2334488889984 33322 233332 4667777777664
Q ss_pred H
Q 048639 1118 T 1118 (1139)
Q Consensus 1118 e 1118 (1139)
.
T Consensus 265 ~ 265 (440)
T 2z4s_A 265 E 265 (440)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=2.2e-05 Score=80.10 Aligned_cols=41 Identities=37% Similarity=0.489 Sum_probs=34.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCcccC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGIK 953 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di~ 953 (1139)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 57 6777876554
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=3e-06 Score=88.46 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 951 (1139)
..|+|+|++||||||+.+.|.+. |-..+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 667776543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00011 Score=83.46 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=26.1
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999885
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00037 Score=80.32 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.8
Q ss_pred CCc--EEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 913 PGL--KVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 913 ~Ge--~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
++. .+.|+||+|+||||+++.+.+...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=83.18 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc-cC------CccEEEECCcc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY-DP------NEGIILIDGKG 951 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-~p------~~G~I~idG~d 951 (1139)
-+++|+.+.|.||+|||||||+..+..-. .| ..+.++||...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58899999999999999999999888752 22 23456666543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=81.67 Aligned_cols=129 Identities=11% Similarity=0.169 Sum_probs=77.0
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|+.=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 467777766999999999999999999999888754311 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC-CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG-VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g-~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
.+.+++...+... ...++ ... + ..+ ..||++++||++.|...+.++++++.|+|...+
T Consensus 106 -------~s~~~l~~R~~~~-----~~~i~--~~~-l-~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~----- 164 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AGSIN--AQK-I-KAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV----- 164 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HTTCC--HHH-H-HSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----
T ss_pred -------CCHHHHHHHHHHH-----HcCCC--HHH-H-hcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----
Confidence 2233333222111 01111 000 0 011 139999999999999999999999999986432
Q ss_pred HHHHHHHHHHc--CCCe--EEEEec
Q 048639 432 KLVQEALERAM--QGRT--VILIAH 452 (1139)
Q Consensus 432 ~~i~~~l~~~~--~~~t--vi~itH 452 (1139)
..+...++.+. .+.. +|+|-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 22333333321 2445 666665
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00091 Score=74.05 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh----------HHHHHHHHHHHc-----CCCeEEEEecCccchh---
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSES----------EKLVQEALERAM-----QGRTVILIAHRMSTIV--- 458 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~----------~~~i~~~l~~~~-----~~~tvi~itH~~~~~~--- 458 (1139)
+++++.|..++++...+|.++++||+.+.++... ...+...+.... .+..+|.+|++++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988765422 122333343322 1235667788765432
Q ss_pred --ccCEEEEE
Q 048639 459 --NADMIAVV 466 (1139)
Q Consensus 459 --~~d~i~~l 466 (1139)
++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 35555443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00032 Score=82.34 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=34.0
Q ss_pred cCCCEEEEeCCCCCCCH-HhHHHHHHHHHHHc-CCCeEEEEecCc
Q 048639 412 KNPPILLLDEATSALDS-ESEKLVQEALERAM-QGRTVILIAHRM 454 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~~ 454 (1139)
.+|++|++||+..-.+. .++..+...+..+. .++.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887765 56777778877654 478899999974
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00085 Score=74.29 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH----------HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAES----------ERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t----------e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
+++++++-.+++|...+|.+|++||+.+-.+... ...+...+...... ...++..+|..|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN-----PDGDRIVVLAATNRPQE 171 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----------CEEEEEEESCGGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc-----CCCCcEEEEeecCChhh
Confidence 3577788888888888999999999988766432 12233444432200 00123557788888654
Q ss_pred h-----hcCCEEEEEe
Q 048639 1096 V-----INSDVIVVMD 1106 (1139)
Q Consensus 1096 i-----~~~DrI~vl~ 1106 (1139)
+ ..+|+++.+.
T Consensus 172 l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVS 187 (297)
T ss_dssp BCHHHHHHCCEEEECC
T ss_pred CCHHHHhhCCeEEEeC
Confidence 3 2467665553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.26 E-value=6.3e-05 Score=90.75 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=43.0
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
.+++++++++ +|+.++|+||+|+|||||+++|++...+..|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4678888888 89999999999999999999999999999999887763
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.25 E-value=9.5e-05 Score=83.91 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=37.7
Q ss_pred ccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccccCCcc
Q 048639 902 TVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFYDPNEG 943 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~~p~~G 943 (1139)
.+++.++..|+.|+. +.+.||+|+||||+++++.+...+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.25 E-value=5.9e-05 Score=85.63 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=38.0
Q ss_pred ccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 273 LILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999999876554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=70.04 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccE
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGD 315 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 315 (1139)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00031 Score=80.70 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
.++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00014 Score=85.61 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=40.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc------------cCCccEEEECCcccCCCChHHHhhhceEEcccccccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY------------DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS 975 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~------------~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~ 975 (1139)
-+++|+|++|+|||||++.|.|.. ++.+|.+.++|.++.-++...+|+..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999974 3678999999998776666666777777777665553
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=9.6e-05 Score=76.71 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=39.7
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cc----cCCccEEEECCccc
Q 048639 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FY----DPNEGIILIDGKGI 952 (1139)
Q Consensus 892 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~----~p~~G~I~idG~di 952 (1139)
+++|++ -.++++++|+..+++ +|+++|++|+|||||++.+.+ .+ .+..+.+.++|.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 456764 236899999998877 699999999999999999986 22 23456777776543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.18 E-value=6.3e-05 Score=85.26 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=46.4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+..|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 47899999999999999999999999999999999998888888876666543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0001 Score=81.97 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE-CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI-DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD 362 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 362 (1139)
++.+++|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..++++++..-+. +.| .|....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~--~iD-----TpG~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI--YVD-----TPGLHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE--EES-----SSSCCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE--EEE-----CcCCCc
Confidence 44589999999999999999999863 211 111100 11234677777643110 111 111110
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCC---Cc--cccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHh-HHHH
Q 048639 363 EQIYNASMMANAHSFISQLPDQY---ST--ELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDSES-EKLV 434 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~---~t--~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~~~-~~~i 434 (1139)
+...... .++.......+ |. .+-+.. ++|+|++ .+++++. ..|.++++ +-+|... ...+
T Consensus 69 -~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~-~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 69 -EEKRAIN----RLMNKAASSSIGDVELVIFVVEGT-RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp -HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETT-CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred -cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCC-CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 0111111 01111111111 11 111222 3999987 5566665 67888888 7888876 5566
Q ss_pred HHHHHHHcC--C--CeEEEEecCccch
Q 048639 435 QEALERAMQ--G--RTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~~--~--~tvi~itH~~~~~ 457 (1139)
.+.+..+.+ + .++.+.+|+-..+
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 666665543 2 2444455554444
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00026 Score=81.41 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=26.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
.++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987654
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00051 Score=73.33 Aligned_cols=128 Identities=12% Similarity=0.180 Sum_probs=66.1
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcC
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA 989 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~ 989 (1139)
+..|+.+.++|+|||||||++.++..-.....|. ...+.++.|.|... .-++.+|+.-.....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999877654321111111 13467777777543 235556653211000
Q ss_pred CHHHHHHHHHHcCchHHHhhCCCCccccccCCCC---CCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC---QLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVS 1065 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~---~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~ 1065 (1139)
+ -..++.. ...+......+. --+.|.-.+. .+..+++-+++|+||+-. ++|......+.+
T Consensus 137 ----~---~~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 ----P---GKSCGYS-------VRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp ----T---TSSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred ----c---CceEEEe-------echhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 0000000 000111110111 1244554444 344689999999999976 466665543444
Q ss_pred HHHhh
Q 048639 1066 ALEAL 1070 (1139)
Q Consensus 1066 ~l~~~ 1070 (1139)
.+...
T Consensus 201 ~i~~~ 205 (235)
T 3llm_A 201 DVVQA 205 (235)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44433
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.16 E-value=9.1e-05 Score=89.37 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=50.6
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
++++..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|.....--....++.++..
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 456666663 235788899988 8999999999999999999999999999999999888543221122334566776
Q ss_pred cccc
Q 048639 968 QQEP 971 (1139)
Q Consensus 968 ~Qdp 971 (1139)
+|..
T Consensus 162 ~~~~ 165 (543)
T 3m6a_A 162 PGRI 165 (543)
T ss_dssp --CH
T ss_pred chHH
Confidence 6653
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00051 Score=76.30 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE-CCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCH
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i-dG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd 991 (1139)
++.+|+|+|++|+|||||++.|.+.- +.+ .+.+-. ..++..++++|+..-+ ++.| ++| ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i--~~iD--TpG---~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQA--IYVD--TPG---LHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEE--EEES--SSS---CCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeE--EEEE--CcC---CCc
Confidence 34489999999999999999999852 222 111111 1234567888765321 1111 123 210
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccc--cCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHHH-HHHHHHH
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVV--GEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAES-ERVIVSA 1066 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v--~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~t-e~~I~~~ 1066 (1139)
+-...+...-.......+ ...|..+ -+... +|+|++ .+++++. ..|.||++ +-+|... ...+.+.
T Consensus 69 -~~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 69 -EEKRAINRLMNKAASSSI-GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp -HHHHHHHHHHTCCTTSCC-CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHH-hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 111111110000000111 1222211 12223 899987 4556555 67889998 6889876 5556666
Q ss_pred HHhhCCCCCCccccCC-CeEEEEEecCchhhhc
Q 048639 1067 LEALNPKSSSCGELAS-RTTQITVAHRLATVIN 1098 (1139)
Q Consensus 1067 l~~~~~~~~~~~~~~~-~tTvI~IaHrl~ti~~ 1098 (1139)
++++.. ..+ ..++.+.||.-..+..
T Consensus 139 l~~l~~-------~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLAS-------QMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHT-------TSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHH-------hcCcCceEEEECCCCCCHHH
Confidence 665431 012 2346666777665543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00011 Score=74.76 Aligned_cols=40 Identities=35% Similarity=0.386 Sum_probs=32.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCccC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSLNI 323 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~~~ 323 (1139)
++|++++|+|++||||||+++.|.+.+.+ .| .+.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666665443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.10 E-value=7.6e-05 Score=84.58 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=43.5
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 4789999999999999999999999999999999999888777766443
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0022 Score=69.37 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=28.7
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
++++++..++| +.|+||+|+|||||++++++.+... -+.+++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 44455555555 8999999999999999999987432 3555543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00015 Score=82.22 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=37.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 34678999999999999999999999988899999888776643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00024 Score=71.72 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
.|++++|+|++||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00016 Score=75.50 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEE----------EECCcccCCCChHHHhhhceEEccccccccccH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGII----------LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI 978 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTI 978 (1139)
+..+|..++|+|+|||||||+++.|...++. ..+.+ .+||.+..-++.+.+++.+ .|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4568999999999999999999999987742 12222 2467777666777766542 34444444444
Q ss_pred HHH
Q 048639 979 RNN 981 (1139)
Q Consensus 979 reN 981 (1139)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 344
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00025 Score=75.37 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=31.9
Q ss_pred ccceeEEec---CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 275 LKGFSLSIP---AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 275 l~~is~~i~---~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 556666665 8999999999999999999999999988 666654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0003 Score=82.71 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=37.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF 345 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 345 (1139)
.++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 799999999999999999999853 67899999998664444433344445554544443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=74.47 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=33.4
Q ss_pred ccceeEEEe---CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 904 LNNFSLQIE---PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 904 L~~vsl~I~---~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
|.++|+.+. +|..|.|.|++||||||+++.|...+.+ .+.+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 61 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTRE 61 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecC
Confidence 556666665 8999999999999999999999999987 667655443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00015 Score=76.05 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=38.5
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGI 952 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di 952 (1139)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45778999999999999999999999999988888 888886443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00015 Score=76.22 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=37.3
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSL 321 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~ 321 (1139)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45778999999999999999999999999988888 8888753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00029 Score=71.18 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 66765
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00041 Score=71.31 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=28.4
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cc----cCCccEEEECCcc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FY----DPNEGIILIDGKG 951 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~----~p~~G~I~idG~d 951 (1139)
+++++|+..++. +|+++|++|+|||||++.+.+ .+ .+..+.+.++|..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 789999998877 899999999999999999987 22 2334566666643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0018 Score=68.95 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDA 360 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~ 360 (1139)
+.+|+.++++||+||||||++.+++.......|. ...+.++.|.|.... .++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999888765432111111 124677777775432 24555543211000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCCCc----ccccc---CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHH
Q 048639 361 DDEQIYNASMMANAHSFISQLPDQYST----ELGQR---GVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEK 432 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~g~~t----~i~~~---g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~ 432 (1139)
+ ....|+.. ..... ..--+.|+-.+.. +.-+.+-+++++||+=. ++|.....
T Consensus 137 -----------------~-~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 -----------------P-GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp -----------------T-TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred -----------------c-CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 00001100 00000 1113456665553 34689999999999976 46666553
Q ss_pred HHHHHHHHHcCC
Q 048639 433 LVQEALERAMQG 444 (1139)
Q Consensus 433 ~i~~~l~~~~~~ 444 (1139)
...+.+.....+
T Consensus 197 ~~l~~i~~~~~~ 208 (235)
T 3llm_A 197 VVLRDVVQAYPE 208 (235)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhhCCC
Confidence 344444343333
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00012 Score=77.62 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc---cccCCccEE--------EECCcccCCCC-hHHHhhhceEEc------ccccccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLR---FYDPNEGII--------LIDGKGIKEYN-LRRLRSQIGLVQ------QEPLLFS 975 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~r---l~~p~~G~I--------~idG~di~~~~-l~~lR~~i~~V~------Qdp~LF~ 975 (1139)
.-.++|+||+||||||+.+.|.+ +.-.+.|.+ .-.|+|..+.. +..+-+.+.+.. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 35899999999999999999984 433455655 23566665542 445666666665 4445555
Q ss_pred ccHHHHhc
Q 048639 976 CSIRNNIC 983 (1139)
Q Consensus 976 gTIreNL~ 983 (1139)
..|.+||.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 56655553
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=68.19 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEG 943 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G 943 (1139)
+|+|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6999999999999999999986655444
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00025 Score=80.47 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5679999999999999999999999999889888766554
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00055 Score=69.09 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++|.+|+|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00025 Score=73.58 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=31.6
Q ss_pred EEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 263 ~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|++ -.++++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456664 246899999998887 589999999999999999986
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=73.86 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00059 Score=67.20 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.4
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++.++++.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 999999999999999999873
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00026 Score=73.85 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..+|.+++|+|||||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998874
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00012 Score=77.69 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHh---ccCCCccEEE--------ECCccCCCCC-HHHHhcceEEEec------CCCCCc
Q 048639 285 GKMVALVGSSGCGKSTVISLVAR---FYDPSNGDIL--------IDSLNIKDLD-LKSLRKNIGAVSQ------EPSLFT 346 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g---~~~~~~G~i~--------~~g~~~~~~~-~~~~~~~i~~v~Q------~~~l~~ 346 (1139)
.-+++|.||+||||||+.+.|+. +...+.|.++ -.|.++.+.. ...+...+.+.++ ..+|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 45899999999999999999984 4344555552 2455544332 3345556666663 334444
Q ss_pred ccHHHHHh
Q 048639 347 GSLMDNIK 354 (1139)
Q Consensus 347 ~ti~~ni~ 354 (1139)
..|.++|.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 45555554
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0046 Score=69.97 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=30.1
Q ss_pred ccccceeEE---ecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 273 LILKGFSLS---IPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 273 ~~l~~is~~---i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+.|+.+ +. +++|+++.|.|++|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356665 33 88999999999999999999988876543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0012 Score=68.49 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0015 Score=73.43 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
+..+.|.||+|+|||||++++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999987654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0028 Score=70.31 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=30.4
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
+.++++..+.|.||+|+|||||++++++... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467889999999999999999999999863 3444443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0034 Score=68.92 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.8
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++++.-+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00013 Score=75.89 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc------ccCCccEEEECCc--ccCCCCh--------HHHhhhceEEccccccccccHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRF------YDPNEGIILIDGK--GIKEYNL--------RRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl------~~p~~G~I~idG~--di~~~~l--------~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
.|+|+|++||||||+++.|.+. .+|..|...++.. |-...+. ..++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 4444443322211 1100110 0123334566777788888888
Q ss_pred HHhcc
Q 048639 980 NNICY 984 (1139)
Q Consensus 980 eNL~~ 984 (1139)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 87765
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00083 Score=75.08 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=31.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+.|+.+.--+++|+.+.|.|++|+||||++.-+..-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467777767999999999999999999998877643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00095 Score=68.54 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=20.9
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999998877 789999999999999999997
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=70.65 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
++..+.|.||+|+|||||++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0059 Score=66.96 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++++..+.|.||+|+||||+++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.01 Score=67.20 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=33.5
Q ss_pred ccccceeE---EEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECC
Q 048639 902 TVLNNFSL---QIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDG 949 (1139)
Q Consensus 902 ~vL~~vsl---~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG 949 (1139)
+.|+.+ + -+++|+.+.|.|++|+|||||+..+..-.... ..-++||.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345555 3 38899999999999999999998777544322 23455554
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0048 Score=68.54 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
..+.++||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999987776644
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0005 Score=75.96 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEeEEEECCCCCCcccccc-eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 888 FQNIKFNYPSRPEVTVLNN-FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~-vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
.+++...|... .++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 77 ~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 44455556321 145 777776 999999999999999999999999998889999988887653
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0013 Score=66.43 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=67.45 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=26.8
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00051 Score=75.90 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=40.7
Q ss_pred cc-eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 276 KG-FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 276 ~~-is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999999998888888866554
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=64.30 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=24.6
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 889999999999999999863
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00066 Score=77.15 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888775555567777776654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=74.89 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=34.8
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcc-----------ccCCccEEEECCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRF-----------YDPNEGIILIDGK 950 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl-----------~~p~~G~I~idG~ 950 (1139)
.+..|.++||||++|+|||||+++|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 6788899988764
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0068 Score=67.15 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=31.1
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
++.++++..+.|.||+|+||||+++++.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34578899999999999999999999998763 3444444
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.002 Score=68.53 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999887653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0011 Score=67.94 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=31.9
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 317 (1139)
...+|.+++|+|++||||||+++.|.+.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457899999999999999999999999887777653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00043 Score=78.96 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=36.5
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++...+..|.+..+
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 3567999999988852 35889999976 9999999999999999988765555544333
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0032 Score=74.28 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.|++....++..+++++++|+......-....+..+.+.+++ .+.. +|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----------~~~p-vilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----------TKKP-VVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----------CCSC-EEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----------cCCC-EEEEEECccch
Confidence 3588888888888999988777765554444556667777763 2334 88888887754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0027 Score=65.79 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
..+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0011 Score=75.15 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=32.8
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+++|+++|| .-.++......+.+.+++.. ..+.+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----------~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS----------GVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----------TTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC----------CCceEEEEeCchhhC
Confidence 668999999 56788888888888888642 334477788776644
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=66.84 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=26.7
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
++|+..++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.009 Score=58.24 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 455678999999999999999998876543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.003 Score=63.00 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=72.90 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=32.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhc-----------cCCCccEEEECC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARF-----------YDPSNGDILIDS 320 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~~~g 320 (1139)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999998 567777777665
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0023 Score=64.58 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLN 322 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~ 322 (1139)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999986543 3566665543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=64.81 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
-+|+++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999983
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=64.22 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKG 951 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~d 951 (1139)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999886543 3778887654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0018 Score=66.19 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE-EECC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-LIDG 949 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I-~idG 949 (1139)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988776765 4554
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0063 Score=64.34 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.++.+|++||+-. +|.+....+.+.+++. ..+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----------~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----------CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----------CCceEEEEEeCChHhC
Confidence 4678999999876 7888777787777642 2345588888876654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0031 Score=65.51 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.1
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++.++.+.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666654 999999999999999999863
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=68.64 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=66.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECC-----------
Confidence 357777656899999999999999999999988876533222 123333322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts 424 (1139)
.+.+++...... ....++. + .+. . ..|+..+.+|+.-|-..+.+.++++.|+|..
T Consensus 239 -------~~~~~l~~R~~~-----~~~~i~~--~-~l~-~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 293 (444)
T 2q6t_A 239 -------MPAAQLTLRMMC-----SEARIDM--N-RVR-L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL 293 (444)
T ss_dssp -------SCHHHHHHHHHH-----HHTTCCT--T-TCC-G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC
T ss_pred -------CCHHHHHHHHHH-----HHcCCCH--H-HHh-C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 223333222110 0111211 0 111 1 2699999999988888788888998887643
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.002 Score=69.58 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=33.2
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+++-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999999875 35677777544
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.002 Score=69.53 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999998875 356888886554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.002 Score=66.76 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
..+++|+|++||||||+++.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999999876 4455554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0059 Score=71.94 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 455 (1139)
+.|++-...++..+.+++++|+......-.......+.+.+++ .++.+|++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3488888889999999998877654443223333455555533 4778888887665
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.01 Score=62.74 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
.++.++++||+-. +|......+.+.+.....+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 67777777777665443456788888876544
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.00056 Score=78.00 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=36.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.|...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46888888887752 45889999977 99999999999999999988666666554433
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.018 Score=63.76 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
...+.|+||+|+||||+++++.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999987766643
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0021 Score=66.63 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4679999999999999999998876 5566765444
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=70.50 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-+++|+.+.|.|++||||||++.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987775
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0049 Score=61.39 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.021 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+.+.-|-|.|++|+|||++++++.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4566799999999999999999987654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0031 Score=64.29 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.|+||||||||||++.|...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998665
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.037 Score=59.53 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
..-+.|.||+|+||||+++.++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=63.84 Aligned_cols=75 Identities=31% Similarity=0.549 Sum_probs=49.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~ 983 (1139)
|.|+||||||||||++.|+.-++ |..|+ +||+|.--++.+...+.+ -++-++-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCce-
Confidence 78999999999999999875432 34566 489988888877776543 344455444444442
Q ss_pred cCCCcCCHHHHHHHHHH
Q 048639 984 YGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~ 1000 (1139)
||. +.+.+.++++.
T Consensus 78 YGt---~~~~v~~~l~~ 91 (186)
T 1ex7_A 78 YGS---TVASVKQVSKS 91 (186)
T ss_dssp EEE---EHHHHHHHHHH
T ss_pred eee---ecceeeehhhC
Confidence 342 34556555544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0015 Score=73.06 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=34.5
Q ss_pred ccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccC
Q 048639 273 LILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378889999999999 99999999999999999998763
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.027 Score=63.91 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0021 Score=69.54 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=32.0
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
.++++++.+++| +.|+||+|+||||+++++.+..... -+.+++.++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~ 82 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence 345555555555 9999999999999999999987532 4677766553
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0042 Score=63.17 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.++++|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0041 Score=64.44 Aligned_cols=21 Identities=43% Similarity=0.789 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=64.04 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35788999999999999999999999864
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0051 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
+|+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999997543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.019 Score=65.70 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0054 Score=63.57 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
+|+|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0054 Score=62.32 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
+++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997544
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.024 Score=64.51 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
.+|..+.|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999998764444556655443
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0071 Score=61.01 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.002 Score=71.91 Aligned_cols=37 Identities=35% Similarity=0.524 Sum_probs=33.9
Q ss_pred ccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccc
Q 048639 902 TVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999998864
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.012 Score=61.66 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCc-----------cchhccCEEEEEe
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRM-----------STIVNADMIAVVE 467 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-----------~~~~~~d~i~~l~ 467 (1139)
+++++++||.-- |+.+.-+.+ ..+.+ .+.+||++-|+. +.+..||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 22322 388999999932 2234599998876
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.071 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+..+.|.||+|+||||+++.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999888763
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0088 Score=67.48 Aligned_cols=36 Identities=31% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc-----------cccCCccEEEECC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLR-----------FYDPNEGIILIDG 949 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~r-----------l~~p~~G~I~idG 949 (1139)
|-+++|||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788888776
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0084 Score=65.98 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=35.0
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cccCCccEEEECC
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FYDPNEGIILIDG 949 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~~p~~G~I~idG 949 (1139)
++++..+.+ .|.-++|+|+||+||||++..|.+ +...+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 567777777 788999999999999999999987 5544444454433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.017 Score=67.72 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=71.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCcccCCCChHHHhhhce----EEcccccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGIKEYNLRRLRSQIG----LVQQEPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di~~~~l~~lR~~i~----~V~Qdp~LF~ 975 (1139)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-...| -++++. +.+...+..++- -++.+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~---- 259 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR---- 259 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH----
Confidence 457777656999999999999999999999888776543223 333433 355666655531 122111
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS 1053 (1139)
++. ...++++.....+.+ +.+...| -.+.+. ..+|..+ ..+.+|.+. .+++++|+|..+.
T Consensus 260 --l~~------g~l~~~~~~~~~~a~---~~l~~~~----l~i~d~-~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 260 --VRL------GQLTDRDFSRLVDVA---SRLSEAP----IYIDDT-PDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp --CCG------GGCCHHHHHHHHHHH---HHHHTSC----EEEECC-TTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred --HhC------CCCCHHHHHHHHHHH---HHHhcCC----EEEECC-CCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 111 123444422222111 1122111 111111 2456554 456667666 3789999999887
Q ss_pred CCCH
Q 048639 1054 ALDA 1057 (1139)
Q Consensus 1054 ~LD~ 1057 (1139)
-.+.
T Consensus 322 ~~~~ 325 (444)
T 2q6t_A 322 MSGP 325 (444)
T ss_dssp CBCC
T ss_pred cCCC
Confidence 6543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0059 Score=62.12 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.085 Score=59.73 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=25.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+++|+++.|.||+|||||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998776544
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.01 Score=60.32 Aligned_cols=36 Identities=36% Similarity=0.604 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----ccCCcc----EEEECCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLR-F----YDPNEG----IILIDGKG 951 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-l----~~p~~G----~I~idG~d 951 (1139)
+|+|+|++|+|||||++.+.+ - +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999976554 3 566666 66777743
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.008 Score=62.37 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~ 935 (1139)
++.++++.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 488999999999999999875
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.098 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++..-+.|.||+|+||||+++++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998754
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.096 Score=58.38 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678999999999999999999876
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.085 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
++.+++++|++||||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887653
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.073 Score=60.26 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-+++|+.+.|.||.|+|||||+..+..-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997776543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0072 Score=69.72 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
.+..++|+|++||||||+++.+++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999999888888888773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1139 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-98 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-93 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-93 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-89 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-84 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-76 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-83 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-81 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-72 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-71 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-50 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-47 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-42 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-41 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-40 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-40 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-40 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-36 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-32 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-36 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-35 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-29 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-30 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 9e-30 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-26 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-22 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-21 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-07 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-07 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 8e-06 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 8e-04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 309 bits (793), Expect = 5e-98
Identities = 129/249 (51%), Positives = 171/249 (68%), Gaps = 1/249 (0%)
Query: 248 KELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307
+ +E G IDI V F Y + ILK +LSI G+ VA VG SG GKST+I+L+ R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 308 FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYN 367
FYD ++G ILID NIKD SLR IG V Q+ LF+ ++ +NI +G A DE++
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 368 ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALD 427
A+ MANAH FI LP Y TE+G+RGV+LSGGQKQR++IAR + NPPIL+LDEATSALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 428 SESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
ESE ++QEAL+ + RT +++AHR+STI +AD I V+E+G + ETGTH L+ Y
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246
Query: 488 NRLFTMQNL 496
L+++QNL
Sbjct: 247 EHLYSIQNL 255
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 297 bits (762), Expect = 1e-93
Identities = 123/263 (46%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 872 DAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL 931
+ + +GRI+ ++ F Y E +L + +L IE G VA VG SG GKS+++
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 932 ALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991
L+ RFYD G ILIDG IK++ LR+QIGLVQQ+ +LFS +++ NI G A++
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051
E+VE +K AN HDFI +LP GYDT VGE+G +LSGGQKQR++IAR L P I++LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111
TSALD ESE +I AL+ L+ T + VAHRL+T+ ++D IVV++ G +V
Sbjct: 182 TSALDLESESIIQEALD----------VLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 231
Query: 1112 EMGSHSTLVAESQGVYSRLYQLQ 1134
E G+H L+A QG Y LY +Q
Sbjct: 232 ETGTHRELIA-KQGAYEHLYSIQ 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 297 bits (762), Expect = 1e-93
Identities = 117/249 (46%), Positives = 163/249 (65%), Gaps = 2/249 (0%)
Query: 247 GKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA 306
+ +++ G+++ R+V F YP R + L+ +L IPAGK VALVG SG GKST+ SL+
Sbjct: 4 KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 307 RFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA-DDEQI 365
RFYD G IL+D ++++ L SLR + VSQ LF ++ +NI + EQI
Sbjct: 63 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 122
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
A+ MA A FI+++ + T +G+ GV LSGGQ+QRIAIARA++++ PIL+LDEATSA
Sbjct: 123 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 426 LDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD 485
LD+ESE+ +Q AL+ + RT ++IAHR+STI AD I VVEDG + E GTH LL
Sbjct: 183 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 242
Query: 486 FYNRLFTMQ 494
Y +L MQ
Sbjct: 243 VYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 285 bits (731), Expect = 3e-89
Identities = 122/255 (47%), Positives = 171/255 (67%), Gaps = 13/255 (5%)
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
R G +EF+N+ F YP R EV L N +L+I G VALVG SG+GKS++ +L+ RFYD
Sbjct: 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 67
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSK 999
+EG IL+DG ++EY L LR+Q+ LV Q LF+ ++ NNI Y E S +I E ++
Sbjct: 68 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR 127
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
A DFI+ + +G DT++GE G LSGGQ+QRIAIAR LL+ I++LDEATSALD ES
Sbjct: 128 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
ER I +AL+ EL T + +AHRL+T+ +D IVV++ G +VE G+HS L
Sbjct: 188 ERAIQAALD----------ELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 237
Query: 1120 VAESQGVYSRLYQLQ 1134
+A+ GVY++L+++Q
Sbjct: 238 LAQH-GVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (705), Expect = 1e-85
Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 3/244 (1%)
Query: 251 EKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310
++G + +DV FAYP+RPD L+L+G + ++ G++ ALVG +G GKSTV +L+ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 311 PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNAS 369
P+ G +L+D + + + L + + AV QEP +F SL +NI G E+I A+
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 370 MMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429
+ + AHSFIS LP Y TE+ + G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALD+
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 430 SEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFY 487
S+ V++ L + + R+V+LI +S + AD I +E G + E GTH L++ Y
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCY 245
Query: 488 NRLF 491
+
Sbjct: 246 WAMV 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 273 bits (700), Expect = 5e-85
Identities = 101/253 (39%), Positives = 152/253 (60%), Gaps = 10/253 (3%)
Query: 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940
++G ++FQ++ F YP+RP+V VL + + PG ALVGP+G+GKS+V ALL Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 941 NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-NEAASEAEIVEVSK 999
G +L+DGK + +Y R L Q+ V QEP +F S++ NI YG + + EI +
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
K+ H FIS LP GYDT V E G QLSGGQ+Q +A+AR L+++P +++LD+ATSALDA S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119
+ + L E SR+ + + L+ V +D I+ ++ G + E G+H L
Sbjct: 187 QLQVEQLLYESP-------ERYSRSV-LLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
Query: 1120 VAESQGVYSRLYQ 1132
+ + +G Y + Q
Sbjct: 239 MEK-KGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 270 bits (691), Expect = 9e-84
Identities = 108/239 (45%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ R V FAY IL+ S ++A G SG GKST+ SL+ RFY P+ G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAH 375
ID I ++ L++ R IG VSQ+ ++ G++ +N+ G D DE ++ +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
SF+ +PDQ +TE+G+RGV++SGGQ+QR+AIARA ++NP IL+LDEAT++LDSESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494
+AL+ M+GRT ++IAHR+STIV+AD I +E GQ+T +G H+ L+ T Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 249 bits (636), Expect = 4e-76
Identities = 94/254 (37%), Positives = 149/254 (58%), Gaps = 14/254 (5%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +++ F Y ++ L + S + +P +A GPSG GKS++ +LL RFY P G I
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVE-VSKKANIH 1004
IDG+ I +L RSQIG V Q+ + + +IR N+ YG E E + V A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIV 1064
F+ ++PD +T VGE+G ++SGGQ+QR+AIAR L+ P I++LDEAT++LD+ESE ++
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1065 SALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124
AL+ L T + +AHRL+T++++D I ++KG++ G H+ LVA +
Sbjct: 180 KALD----------SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-TH 228
Query: 1125 GVYSRLYQLQAFSG 1138
+Y++ Q G
Sbjct: 229 PLYAKYVSEQLTVG 242
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 268 bits (687), Expect = 3e-83
Identities = 108/241 (44%), Positives = 157/241 (65%), Gaps = 2/241 (0%)
Query: 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
+I R++ F Y +IL +LSI G+++ +VG SG GKST+ L+ RFY P NG
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 316 ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
+LID ++ D LR+ +G V Q+ L S++DNI + N E++ A+ +A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
FIS+L + Y+T +G++G LSGGQ+QRIAIARA+V NP IL+ DEATSALD ESE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSD-FYNRLFTMQ 494
+ + +GRTVI+IAHR+ST+ NAD I V+E G++ E G H LL + Y+ L+ +Q
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 495 N 495
+
Sbjct: 240 S 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 263 bits (673), Expect = 3e-81
Identities = 113/250 (45%), Positives = 162/250 (64%), Gaps = 11/250 (4%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
I F+NI+F Y V +L+N +L I+ G + +VG SG+GKS++ L+ RFY P G +
Sbjct: 2 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHD 1005
LIDG + + LR Q+G+V Q+ +L + SI +NI N S +++ +K A HD
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1006 FISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065
FIS L +GY+T+VGE+G LSGGQ+QRIAIAR L+ P I++ DEATSALD ESE VI+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1066 ALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQG 1125
+ ++ T I +AHRL+TV N+D I+VM+KG++VE G H L++E +
Sbjct: 181 NMH----------KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPES 230
Query: 1126 VYSRLYQLQA 1135
+YS LYQLQ+
Sbjct: 231 LYSYLYQLQS 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 239 bits (610), Expect = 5e-72
Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 23/294 (7%)
Query: 220 VFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFS 279
+ A E F + K + S + ++ + N+ +C P +LK +
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQS--NGDRKHSSDENNVSFSHLCLVG--NP---VLKNIN 56
Query: 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339
L+I G+M+A+ GS+G GK++++ L+ + S G I + S
Sbjct: 57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCS 103
Query: 340 QEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG 399
Q + G++ +NI G + D+ + + I++ +Q +T LG+ GV LSGG
Sbjct: 104 QFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162
Query: 400 QKQRIAIARAIVKNPPILLLDEATSALDSES-EKLVQEALERAMQGRTVILIAHRMSTIV 458
Q+ RI++ARA+ K+ + LLD LD + E++ + + + M +T IL+ +M +
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR 222
Query: 459 NADMIAVVEDGQVTETGTHHSLLQTS-DFYNRLFTMQNLRPIDDSRTKASTVES 511
AD I ++ G GT L DF ++L + R + E+
Sbjct: 223 KADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTET 276
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 235 bits (602), Expect = 6e-71
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 24/282 (8%)
Query: 855 VLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPG 914
++ + E +G K + N+ F++ VL N +L IE G
Sbjct: 4 IMENVTAFWEEGFG-ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974
+A+ G +G+GK+S+L L+L + +EGII G ++ Q +
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIM 109
Query: 975 SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034
+I+ NI +G E V K + I+ + +TV+GE G LSGGQ+ RI+
Sbjct: 110 PGTIKENIIFGVSY-DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARIS 168
Query: 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094
+AR + K + LLD LD +E + + +L + T+I V ++
Sbjct: 169 LARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC---------KLMANKTRILVTSKME 219
Query: 1095 TVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAF 1136
+ +D I+++ +G G+ S L + S+L F
Sbjct: 220 HLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 261
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 175 bits (446), Expect = 2e-50
Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 13/230 (5%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I +++V Y + + LK +L+I G+ V+++G SG GKST+++++ P+ G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 316 ILIDSLNIKDLDLKSLRK----NIGAVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNA 368
+ ID++ DLD L K IG V Q+ +L + ++N+++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 369 SMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
A +++L +++ + QLSGGQ+QR+AIARA+ NPPI+L D+ T ALDS
Sbjct: 122 RKRALECLKMAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 429 ESEKLVQEALER--AMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476
++ + + + L++ G+TV+++ H ++ + I ++DG+V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 167 bits (424), Expect = 2e-47
Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 19/237 (8%)
Query: 886 IEFQNIKFNYPSR-PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ +N+ Y + L N +L I+ G V+++GPSG+GKS++L ++ P EG
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 945 ILIDGKGIKEYNLRRL----RSQIGLVQQEP-LLFSCSIRNNICYGNEAA--SEAEIVEV 997
+ ID + + L R +IG V Q+ L+ + N+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057
K+A ++ L + + K QLSGGQ+QR+AIAR L P I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERF---ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMG 1114
++ I+ L+ LN + T + V H + + I+ + GEV
Sbjct: 179 KTGEKIMQLLKKLNEE--------DGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 5e-43
Identities = 50/236 (21%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ ++DV + L S + AG+++ LVG +G GKST+++ +A G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAH 375
++ L + +SQ+ + F + + + D ++ N A A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA- 114
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK-------NPPILLLDEATSALDS 428
+LG+ QLSGG+ QR+ +A +++ +LLLDE ++LD
Sbjct: 115 ---------LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 429 ESEKLVQEALER-AMQGRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLLQ 482
+ + + L QG +++ +H ++ + +A +++ G++ +G +L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 147 bits (372), Expect = 2e-40
Identities = 49/246 (19%), Positives = 101/246 (41%), Gaps = 36/246 (14%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ Q++ E T L S ++ G + LVGP+GAGKS++LA + +G I
Sbjct: 4 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEP-LLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004
G+ ++ ++ +L + Q+ F+ + + + + E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK-------RPAIMLLDEATSALDA 1057
D +G QLSGG+ QR+ +A +L+ ++LLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1058 ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI-NSDVIVVMDKGEVVEMGSH 1116
+ + L AL + + +H L + ++ ++ G+++ G
Sbjct: 166 AQQSALDKILSALCQQ---------GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 216
Query: 1117 STLVAE 1122
++
Sbjct: 217 EEVLTP 222
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 154 bits (390), Expect = 2e-42
Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 39/269 (14%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + D+ Y +LKG SL AG +++++GSSG GKST + + PS G I
Sbjct: 3 LHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 317 LIDSLNIKDL-------------DLKSLRKNIGAVSQEPSLF---------TGSLMDNIK 354
+++ NI + L+ LR + V Q +L+ + + +
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 355 VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414
+ DA + + + + + P LSGGQ+QR++IARA+ P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168
Query: 415 PILLLDEATSALD-SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVT 472
+LL DE TSALD ++++ + A +G+T++++ H M + + + + G++
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 473 ETGTHHSLLQT-SDFYNRLFTMQNLRPID 500
E G + + F +L+ ++
Sbjct: 229 EEGDPEQVFGNPQSPRLQQFLKGSLKKLE 257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 139 bits (353), Expect = 1e-37
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 46/270 (17%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
++ ++ Y VL SLQ G ++++G SG+GKS+ L + P+EG
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 945 ILIDGKGIKEYN-------------LRRLRSQIGLVQQEP-LLFSCSIRNNICYG----- 985
I+++G+ I LR LR+++ +V Q L ++ N+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 986 --NEAASEAEIVEVSKKANI-HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042
++ + ++ K I P LSGGQ+QR++IAR L
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAME 167
Query: 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101
P ++L DE TSALD E ++ ++ L + T + V H + + S
Sbjct: 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEE---------GKTMVVVTHEMGFARHVSSH 218
Query: 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSRLY 1131
++ + +G++ E G + Q + +
Sbjct: 219 VIFLHQGKIEEEGDPEQVFGNPQSPRLQQF 248
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 149 bits (378), Expect = 4e-41
Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 31/256 (12%)
Query: 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
I+ NI + + LNN SL + G ++G SGAGKS+++ + P EG
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 945 ILIDGK---GIKEYNLRRLRSQIGLVQQEP-LLFSCSIRNNICYG------NEAASEAEI 994
+L+DG+ + E L + R QIG++ Q LL S ++ N+ + + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
E+ + D S P LSGGQKQR+AIAR L P ++L DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LD + R I+ L+ +N + T + + H + V D + V+ GE++E
Sbjct: 171 LDPATTRSILELLKDINRR--------LGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
Query: 1114 GSHSTLVAESQGVYSR 1129
+ S + + + ++
Sbjct: 223 DTVSEVFSHPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 145 bits (368), Expect = 6e-40
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 257 IDIRDVCFAYPSRPDQL-ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD 315
I + ++ + + L SL +PAG++ ++G+SG GKST+I V P+ G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 316 ILIDSLNIKDL---DLKSLRKNIGAVSQEPSLF-TGSLMDNI----KVGNMDADD--EQI 365
+L+D + L +L R+ IG + Q +L + ++ N+ ++ N D+ ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 366 YNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425
+ P LSGGQKQR+AIARA+ NP +LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 426 LDSESEKLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
LD + + + E L+ G T++LI H M + D +AV+ +G++ E T +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 148 bits (374), Expect = 1e-40
Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 32/252 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ +N+ + T +N +L I+ G + L+GPSG GK++ L ++ +P EG I
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYG------NEAASEAEIVEVS 998
+ L I +V Q ++ ++ NI + + + + +
Sbjct: 64 YFGDR--DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ I + ++ P QLSGGQ+QR+A+AR ++ P ++L+DE S LDA+
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117
+ + ++ L K + T I V H + D I VM++G+++++GS +
Sbjct: 171 LRVAMRAEIKKLQQK--------LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 222
Query: 1118 TLVAESQGVYSR 1129
+ V+
Sbjct: 223 EVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 145 bits (368), Expect = 8e-40
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 22/234 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + ++ + + + +L+I G+ + L+G SGCGK+T + ++A +P+ G I
Sbjct: 7 VKLENLTKRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNI----KVGNMDADDEQIYNASMM 371
++ L +NI V Q +++ ++ +NI K+ D+
Sbjct: 64 YFGDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 372 ANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431
+ Q+ + L + QLSGGQ+QR+A+ARAIV P +LL+DE S LD++
Sbjct: 122 E-----LLQIEEL----LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 172
Query: 432 KLVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
++ +++ T I + H + D IAV+ GQ+ + G+ +
Sbjct: 173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 134 bits (339), Expect = 2e-36
Identities = 41/210 (19%), Positives = 99/210 (47%), Gaps = 19/210 (9%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++IRD+ Y D+ +L+ +++I G +V G +G GK+T++ ++ + P G+I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAH 375
+ + + + ++ I + +E + S+ D +K + N +
Sbjct: 59 IYN-----GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV--------ASLYGVKVNKN 105
Query: 376 SFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQ 435
+ L +L ++ +LS G +R+ +A ++ N I +LD+ A+D +S+ V
Sbjct: 106 EIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 165
Query: 436 EALERAMQGRTVILIAHRMSTIVNADMIAV 465
+++ ++ + +++I+ R + D+
Sbjct: 166 KSILEILKEKGIVIISSRE-ELSYCDVNEN 194
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (333), Expect = 1e-35
Identities = 44/228 (19%), Positives = 98/228 (42%), Gaps = 37/228 (16%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
++E +++ Y + VL ++ IE G V GP+G GK+++L + + P +G
Sbjct: 2 KLEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 945 ILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNE----AASEAEIVEVSK 999
I+ +G + +++ +I + +E ++ S+ + + ++ EI++ +
Sbjct: 58 IIYNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE 112
Query: 1000 KANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059
+ D +K +LS G +R+ +A TLL I +LD+ A+D +S
Sbjct: 113 SVEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107
+ ++ ++ + + I+ L+ DV + K
Sbjct: 161 KHKVLKSILEILKE--------KGIVIISSREELSY---CDVNENLHK 197
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 135 bits (340), Expect = 4e-36
Identities = 60/250 (24%), Positives = 119/250 (47%), Gaps = 28/250 (11%)
Query: 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG 314
G + ++D+ + ILKG S I G++ L+G +G GK+T + +++ PS+G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 315 DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANA 374
+ + + +RK I + +E + NM + + A A++
Sbjct: 58 IVTVFG-KNVVEEPHEVRKLISYLPEEAGAYR----------NMQGIEYLRFVAGFYASS 106
Query: 375 HSFISQLPDQYSTELG------QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428
S I ++ ++ + G R S G +++ IARA++ NP + +LDE TS LD
Sbjct: 107 SSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 166
Query: 429 ESEKLVQEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ---- 482
+ + V++ L++ + +G T+++ +H M + D IA++ +G + ETGT L +
Sbjct: 167 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
Query: 483 --TSDFYNRL 490
+ + +
Sbjct: 227 QNIEEVFEEV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 122 bits (308), Expect = 6e-32
Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 32/250 (12%)
Query: 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG 943
G + ++++ + +L S +IE G L+GP+GAGK++ L ++ P+ G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 944 IILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG------NEAASEAEIVE 996
I+ + GK +R I + +E + + + + + + E +
Sbjct: 58 IVTVFGK-NVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 997 VSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056
++ A + + I S G +++ IAR L+ P + +LDE TS LD
Sbjct: 117 ATEIAGLGEKIKDRVS-----------TYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 165
Query: 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115
+ R + L+ + T + +H + V D I ++ G +VE G+
Sbjct: 166 VLNAREVRKILKQAS---------QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 216
Query: 1116 HSTLVAESQG 1125
L +
Sbjct: 217 VEELKERYKA 226
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 134 bits (338), Expect = 7e-36
Identities = 55/233 (23%), Positives = 103/233 (44%), Gaps = 14/233 (6%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ + DV + + ++ SL + G+ + L+G SGCGK+T + ++A +PS G I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 317 LIDSLNIKDLDLKSLRK----NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMA 372
I + D + +I V Q +L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+ + L + + + +LSGGQ+QR+A+ RAIV+ P + L+DE S LD++
Sbjct: 121 REVAELLGLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 433 LVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
++ L++ G T I + H + D IAV+ G + + G+ +
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 132 bits (333), Expect = 3e-35
Identities = 57/256 (22%), Positives = 110/256 (42%), Gaps = 34/256 (13%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ ++ + EVT + SL+++ G + L+GPSG GK++ L ++ +P+ G I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 946 LIDGKGI----KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG-------NEAASEAEI 994
I K + K + I +V Q L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
EV++ + + ++ P +LSGGQ+QR+A+ R ++++P + L+DE S
Sbjct: 121 REVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LDA+ + + L+ L + T I V H + D I VM++G + ++
Sbjct: 170 LDAKLRVRMRAELKKLQRQ--------LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 1114 GSHSTLVAESQGVYSR 1129
GS + + +
Sbjct: 222 GSPDEVYDKPANTFVA 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 132 bits (333), Expect = 3e-35
Identities = 56/230 (24%), Positives = 110/230 (47%), Gaps = 12/230 (5%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
++++ + Y + +KG L +P G++V L+G++G GK+T +S +A G I
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 317 LIDSLNIKDLDLKSLR-KNIGAVSQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANA 374
+ + +I + + I V + +F ++ +N+ +G + D++ +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-EWI 122
Query: 375 HSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434
S +L ++ L Q G LSGG++Q +AI RA++ P +L++DE + L V
Sbjct: 123 FSLFPRLKER----LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 435 QEALER-AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
E +++ +G T++L+ + A V+E GQ+ G LL
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 119 bits (300), Expect = 8e-31
Identities = 49/242 (20%), Positives = 100/242 (41%), Gaps = 20/242 (8%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+E Q++ Y + + L++ G V L+G +GAGK++ L+ + +G I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 946 LIDGKGI--KEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANI 1003
+ +G+ I K ++ + + + ++ N+ G + E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-----GIKRD 118
Query: 1004 HDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVI 1063
++I SL + + G LSGG++Q +AI R L+ RP ++++DE + L +
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVAE 1122
++ +N TT + V + + V++ G++V G S L+
Sbjct: 179 FEVIQKIN---------QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Query: 1123 SQ 1124
Sbjct: 230 EM 231
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 131 bits (332), Expect = 4e-35
Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 18/232 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ +++V A+ + ++ K +L I G+ V VG SGCGKST++ ++A ++GD+
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM-DNIKVGNM--DADDEQIYNASMMAN 373
I + D + +G V Q +L+ + +N+ G A E I
Sbjct: 58 FIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
++ L D+ LSGGQ+QR+AI R +V P + LLDE S LD+
Sbjct: 116 EVLQLAHLLDRKPK-------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 434 VQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
++ + R GRT+I + H + AD I V++ G+V + G L
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 130 bits (329), Expect = 9e-35
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 32/252 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
++ QN+ + EV V + +L I G V VGPSG GKS++L ++ G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYG------NEAASEAEIVEVS 998
I K + + +G+V Q L+ S+ N+ +G + + +V+
Sbjct: 58 FIGEK--RMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058
+ + + P LSGGQ+QR+AI RTL+ P++ LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1059 SERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117
+ + L+ + T I V H + +D IVV+D G V ++G
Sbjct: 165 LRVQMRIEISRLHKR--------LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 216
Query: 1118 TLVAESQGVYSR 1129
L +
Sbjct: 217 ELYHYPADRFVA 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 1e-34
Identities = 50/240 (20%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
+ ++ + L G S+S+ G + ++G +G GKST+I+++ F G +
Sbjct: 5 LRTENIVKYFGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 317 LIDSLNIKDLDLKSL-RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYN------- 367
++ +I + + L I Q P ++++N+ +G + + + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 368 ---ASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424
M+ A + L + S ++ +LSGGQ + + I RA++ NP ++++DE +
Sbjct: 122 PKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIA 179
Query: 425 ALD-SESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+ + + LE +G T ++I HR+ ++N D + V+ +GQ+ G ++
Sbjct: 180 GVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 128 bits (323), Expect = 9e-34
Identities = 49/248 (19%), Positives = 100/248 (40%), Gaps = 23/248 (9%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
+ +NI + E L+ S+ + G ++GP+G+GKS+++ ++ F +EG +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 946 LIDGK-GIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVE------V 997
+ K + I Q P ++ N+ G E+ + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 998 SKKANIHDFISSLPD--GYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSAL 1055
K+ + + + + + K +LSGGQ + + I R L+ P ++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114
I + + L A T + + HRL V+N D + VM G+++ G
Sbjct: 182 APGLAHDIFNHVLELK---------AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232
Query: 1115 SHSTLVAE 1122
+
Sbjct: 233 RGEEEIKN 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 119 bits (299), Expect = 9e-31
Identities = 63/256 (24%), Positives = 121/256 (47%), Gaps = 31/256 (12%)
Query: 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI 944
RI +N+ + + +V L+N ++ IE G + ++GPSGAGK++ + ++ P+ G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 945 ILIDGKGI---KEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYG------NEAASEAEI 994
+ D + + + + +IG+V Q L+ + NI + ++ +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054
EV+K +IH ++ P +LSG Q+QR+A+AR L+K P+++LLDE S
Sbjct: 122 EEVAKILDIHHVLNHFP-----------RELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113
LDA + ++ + + T + V+H A + +D + V+ KG++V++
Sbjct: 171 LDARMRDSARALVKEVQSR--------LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222
Query: 1114 GSHSTLVAESQGVYSR 1129
G L +
Sbjct: 223 GKPEDLYDNPVSIQVA 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 116 bits (292), Expect = 1e-29
Identities = 54/232 (23%), Positives = 103/232 (44%), Gaps = 11/232 (4%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I +++V + + + L +++I G+ ++G SG GK+T + ++A PS G++
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 317 LIDSLNIKDLDLKSLR---KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMAN 373
D + + + IG V Q +L+ +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 374 AHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433
+ I + L +LSG Q+QR+A+ARA+VK+P +LLLDE S LD+
Sbjct: 123 EVAKILDIHHV----LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178
Query: 434 VQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+ ++ + G T+++++H + I AD + V+ G++ + G L
Sbjct: 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 118 bits (296), Expect = 2e-30
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 24/233 (10%)
Query: 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316
I+I + + + L SL + +G+ ++G +G GK+ + L+A F+ P +G I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 317 LIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMA 372
L+D DL + +I V Q SLF ++ N++ G D +++ + +
Sbjct: 58 LLD--GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 373 NAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432
+ + P LSGG++QR+A+ARA+V NP ILLLDE SALD +++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 433 LVQEALER--AMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482
+E L TV+ I H + AD IAVV DG++ + G + +
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 115 bits (288), Expect = 2e-29
Identities = 64/249 (25%), Positives = 117/249 (46%), Gaps = 30/249 (12%)
Query: 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945
IE +++ + + L+N SL++E G ++GP+GAGK+ L L+ F+ P+ G I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 946 LIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYG---NEAASEAEIVEVSKKA 1001
L+DGK + +L + I V Q LF +++ N+ +G + +++ ++
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1002 NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESER 1061
I + P LSGG++QR+A+AR L+ P I+LLDE SALD ++
Sbjct: 116 KIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1062 VIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120
L L+ K ++ T + + H +D I V+ G+++++G +
Sbjct: 165 NAREMLSVLHKK--------NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216
Query: 1121 AESQGVYSR 1129
+
Sbjct: 217 EKPVEGRVA 225
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 116 bits (292), Expect = 9e-30
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 17/230 (7%)
Query: 275 LKGFSLSI---PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331
L F L++ L+G +G GKS + L+A P G++ ++ +I L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PE 68
Query: 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELG 390
R+ IG V Q+ +LF S+ NI G + + + I+ L D+
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK----- 123
Query: 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER--AMQGRTVI 448
+LSGG++QR+A+ARA+V P +LLLDE SA+D +++ ++ E L ++
Sbjct: 124 --PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 449 LIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTMQNL 496
+ H + AD +AV+ +G++ E G L + + +NL
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 106 bits (265), Expect = 4e-26
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 30/227 (13%)
Query: 904 LNNFSLQIE---PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960
L NF L ++ L+GP+GAGKS L L+ P+ G + ++G I L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPE 68
Query: 961 RSQIGLVQQEPLLFSC-SIRNNICYGNEAASEAE----IVEVSKKANIHDFISSLPDGYD 1015
R IG V Q+ LF S+ NI YG E + E+++K I + P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--- 125
Query: 1016 TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075
+LSGG++QR+A+AR L+ +P ++LLDE SA+D +++ V++ L + +
Sbjct: 126 --------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE-- 175
Query: 1076 SCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLVA 1121
+ V H L +D + VM G +VE G L +
Sbjct: 176 ------FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 93.5 bits (231), Expect = 2e-22
Identities = 15/190 (7%), Positives = 42/190 (22%), Gaps = 29/190 (15%)
Query: 288 VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347
+ + G G GK+T++ + + + + ++ + I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407
VG+ + + + A
Sbjct: 63 FFTSKKLVGSYGVNVQ-----------------------------YFEELAIPILERAYR 93
Query: 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVE 467
A ++++DE + V+ I +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 468 DGQVTETGTH 477
+ E
Sbjct: 154 GAVLIELTPE 163
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 89.7 bits (221), Expect = 4e-21
Identities = 18/202 (8%), Positives = 47/202 (23%), Gaps = 39/202 (19%)
Query: 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974
+K+ + G G GK++++ ++ + E R I ++ +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 975 SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034
S + G+ V + + A
Sbjct: 61 SKFFTSKKLVGSYG-----------------------------VNVQYFEELAIPILERA 91
Query: 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094
R ++++DE + + +P +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPN----------VNVVATIPIRD 141
Query: 1095 TVINSDVIVVMDKGEVVEMGSH 1116
I + ++E+
Sbjct: 142 VHPLVKEIRRLPGAVLIELTPE 163
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 53.0 bits (125), Expect = 1e-07
Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 3/319 (0%)
Query: 550 IFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLA 609
F R+W + L+V +A + S + + + + + W L
Sbjct: 3 TFRRLWPTIA-PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 610 FSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRI 669
+ + T + Y V K + +RR L+ ++ +A+F+K SRI
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTL--LSRI 119
Query: 670 VSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKS 729
D+ V + S + +V+ +SI+ I+ W+++++ + P I + +K
Sbjct: 120 TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKR 179
Query: 730 AQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789
+ S + + + + + V F +E ++ K + K
Sbjct: 180 FRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239
Query: 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTV 849
+ + ++A A L+ + T + + + L +
Sbjct: 240 SISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQF 299
Query: 850 ISAITVLAPAFEILDRKTE 868
+ F ILD + E
Sbjct: 300 QRGMAACQTLFAILDSEQE 318
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 51.1 bits (120), Expect = 4e-07
Identities = 27/164 (16%), Positives = 62/164 (37%)
Query: 76 CCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVG 135
W++S+++ ++ P++ + +KR ++S + + T+ EQ + K V F G
Sbjct: 154 YSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGG 213
Query: 136 ERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGG 195
+ E K F +K + + + Q + A +++ + T G
Sbjct: 214 QEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG 273
Query: 196 EVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKP 239
+ S++ L F + AA +F ++ +
Sbjct: 274 TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 30/310 (9%), Positives = 86/310 (27%), Gaps = 2/310 (0%)
Query: 561 RELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFT 620
+ ++ + + PL + I + + ++V ++A + +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 621 HTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAII 680
+ + + + + + + A + + + +
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 681 SDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPC--HFIGGLIQAKSAQGFSGDSA 738
++ + I I +S++ + L A+ + + + + + + +
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 739 AAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLC 798
A E E I V SF E+N + + K +
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 799 LWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAP 858
+ +I + + A L T L + L T+ + +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 859 AFEILDRKTE 868
F+++D +
Sbjct: 314 VFQLIDEDYD 323
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 31/184 (16%), Positives = 64/184 (34%)
Query: 56 LGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSE 115
L + T + I +++L + P ++ + R+ ++ + L+E
Sbjct: 139 LMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAE 198
Query: 116 ATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCC 175
+ + + I V +F E +E K+F + + +VT
Sbjct: 199 VQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIG 258
Query: 176 WALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVI 235
++I VGA + + T G + A V + L Q+ A+ +FQ+I
Sbjct: 259 PIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318
Query: 236 QRKP 239
Sbjct: 319 DEDY 322
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 7e-06
Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 11/184 (5%)
Query: 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF 345
+ V L G G GK+T+I + S + + + ++ +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 346 TGSLMDNI------KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG 399
+ ++ +VG D ++ + + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELF 120
Query: 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHR---MST 456
+ I R + P ++L LV+E R + +R +
Sbjct: 121 SQLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLPD 179
Query: 457 IVNA 460
IV
Sbjct: 180 IVTC 183
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 8e-06
Identities = 20/137 (14%), Positives = 42/137 (30%), Gaps = 5/137 (3%)
Query: 917 VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC 976
V L GP G GK++++ + + RR+ + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFI-----SSLPDGYDTVVGEKGCQLSGGQKQ 1031
E +V+++ + + S G V ++ ++ +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1032 RIAIARTLLKRPAIMLL 1048
I R L P ++L
Sbjct: 124 FIQAVRQTLSTPGTIIL 140
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 397 SGGQKQRIAI----ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRT-VILIA 451
SGG+K A+ A + P +LDE +ALD + + + + R I+I+
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 393
Query: 452 HRMSTIVNADMIAVVE 467
+ + +D + V
Sbjct: 394 LKNTMFEKSDALVGVY 409
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.5 bits (91), Expect = 8e-04
Identities = 25/172 (14%), Positives = 47/172 (27%), Gaps = 12/172 (6%)
Query: 284 AGKMVALVGSSGCGKSTVISLVARFYDPS----NGDILIDSLNIKDLDL------KSLRK 333
G ++ L G G GKST+ +A + D L + +D + R
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRM 62
Query: 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393
+ + + I G + D + A + + + RG
Sbjct: 63 IMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG 122
Query: 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGR 445
+ S D +++ +Q A+ GR
Sbjct: 123 GDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKD--TDQALQSAINALQSGR 172
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1139 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.87 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.87 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.67 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.38 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.18 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.12 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.02 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.94 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.63 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.31 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.96 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.91 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.86 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.7 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.66 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.53 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.52 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.52 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.49 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.34 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.34 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.21 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.2 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.2 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.14 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.09 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.0 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.97 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.92 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.89 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.88 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.87 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.85 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.82 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.78 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.78 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.73 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.7 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.68 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.62 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.61 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.56 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.54 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.49 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.46 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.4 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.4 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.37 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.37 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.28 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.28 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.25 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.25 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.23 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.18 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.18 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.17 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.14 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.13 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.13 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.1 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.07 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.99 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.98 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.96 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.96 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.87 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.86 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.85 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.83 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.77 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.74 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.74 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.71 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.7 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.7 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.68 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.68 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.67 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.52 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.48 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.48 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.47 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.44 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.4 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.38 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.36 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.36 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.35 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.33 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.29 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.27 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.24 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.2 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.2 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.19 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.12 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.11 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.11 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.1 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.08 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.04 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.03 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.02 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.01 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.0 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.99 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.89 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.88 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.79 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.7 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.68 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.68 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.66 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.63 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.6 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.59 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.46 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.46 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.44 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.42 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.42 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.4 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.4 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.38 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.37 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.34 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.3 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.27 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.25 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.23 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.22 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.21 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.18 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.13 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.12 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.11 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.1 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.09 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.08 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.07 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.06 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.98 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.94 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.92 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.85 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.82 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.81 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.75 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.75 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.68 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.68 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.65 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.65 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.6 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.6 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.49 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.46 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.45 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.43 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.39 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.39 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.32 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.3 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.29 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.29 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.2 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.19 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.16 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.15 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.96 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.96 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.86 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.84 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.8 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.77 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.67 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.65 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.59 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.58 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.54 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.53 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.46 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.44 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.44 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.39 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.39 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.27 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.27 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.24 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.24 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.24 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.24 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.17 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.13 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.03 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.02 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.01 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.01 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.99 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.92 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.91 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.86 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.84 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.84 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.82 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.81 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.71 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.67 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.62 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.61 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.6 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.59 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.54 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.53 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.53 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.52 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.51 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.5 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.5 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.4 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.37 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.28 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.2 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.19 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.17 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.14 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.08 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.06 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.04 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.03 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.91 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.89 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.88 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.88 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.85 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.83 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.74 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.74 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.7 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.65 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.65 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.52 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.52 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.52 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.45 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.43 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.39 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.38 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.38 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.33 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.26 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.25 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.24 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.21 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.12 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.11 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.07 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.07 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.05 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.95 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.93 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.92 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.84 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.75 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.71 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.61 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.56 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.53 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.49 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.48 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.44 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.42 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.33 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.3 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.27 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.2 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.14 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.14 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.13 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.07 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.9 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.87 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.82 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 87.82 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.8 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 87.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.77 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.62 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.6 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.5 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.49 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.39 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.14 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.0 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.95 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.81 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.67 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.42 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.39 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 86.35 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.32 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.3 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.28 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.2 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.0 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.78 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.01 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 84.96 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.95 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.85 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.57 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.47 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.28 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 84.08 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.92 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.72 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 83.58 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 83.55 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 83.45 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 83.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.94 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.5 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 82.47 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 81.74 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.38 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.32 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.22 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.9 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.76 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 80.67 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.42 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 80.32 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.29 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.18 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 80.17 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-68 Score=570.68 Aligned_cols=240 Identities=47% Similarity=0.765 Sum_probs=230.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
+|+|+||+|+|+.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 965 GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
+||||+|.+|++||+|||.++.+..++++++++++.+++++++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+++.|++.|++.. +++ |+|+||||++++..||||+||++|+|+|+|+|+||+++++
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~---------~~~-Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~ 229 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKIC---------KGR-TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 229 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH---------TTS-EEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTT
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHh---------CCC-EEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999999999999999875 444 5999999999999999999999999999999999999888
Q ss_pred ChHHHHHHHHh
Q 048639 1125 GVYSRLYQLQA 1135 (1139)
Q Consensus 1125 g~f~~l~~~~~ 1135 (1139)
+.|++||+.|.
T Consensus 230 ~~y~~l~~~Q~ 240 (241)
T d2pmka1 230 SLYSYLYQLQS 240 (241)
T ss_dssp CHHHHHHHHHC
T ss_pred CHHHHHHHHhc
Confidence 99999999885
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.1e-69 Score=575.54 Aligned_cols=242 Identities=51% Similarity=0.856 Sum_probs=232.1
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
.+|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 46899999999999864 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++|+||||+|.+|++||+|||.++.+..++++++++++.+++++++.++|+||||.++++|.+|||||||||||||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||++|++.|++.|++.. +++ |+|+||||++++..||||+||++|+|+|.|+|+||++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~---------~~~-TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLS---------KDR-TTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT---------TTS-EEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHh---------cCC-EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999875 444 5999999999999999999999999999999999998
Q ss_pred ccCChHHHHHHHHh
Q 048639 1122 ESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1122 ~~~g~f~~l~~~~~ 1135 (1139)
+ ++.|++||+.|+
T Consensus 242 ~-~~~y~~l~~~Q~ 254 (255)
T d2hyda1 242 K-QGAYEHLYSIQN 254 (255)
T ss_dssp T-TSHHHHHHTTTT
T ss_pred C-CcHHHHHHHHcC
Confidence 7 899999998775
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.1e-67 Score=563.00 Aligned_cols=242 Identities=49% Similarity=0.806 Sum_probs=230.6
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+.+|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 46889999999999864 45799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++++||||+|.+|++|+++|+.++.+ ..++++++++++.+++++++..+|+||+|.++++|.+|||||||||||||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 57899999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
++|+|||||||||+||+++++.|++.|+++. ++ +|+|+||||++++..||||+||++|+|+|+|+|+||+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~---------~~-~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl 238 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQ---------KN-RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---------TT-SEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhc---------cC-CEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999875 34 4599999999999999999999999999999999999
Q ss_pred hccCChHHHHHHHHh
Q 048639 1121 AESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1121 ~~~~g~f~~l~~~~~ 1135 (1139)
++ ++.|++||+.|.
T Consensus 239 ~~-~~~y~~l~~~Q~ 252 (253)
T d3b60a1 239 AQ-HGVYAQLHKMQF 252 (253)
T ss_dssp HH-TSSHHHHHHHTC
T ss_pred hC-CcHHHHHHHHcc
Confidence 87 899999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-66 Score=558.22 Aligned_cols=243 Identities=40% Similarity=0.717 Sum_probs=229.2
Q ss_pred CccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH
Q 048639 881 RIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 881 ~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l 960 (1139)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+.+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 35688999999999987766789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhceEEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 961 RSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
|++++||||+|.+|++||++|+.++. +..++++++++++++++++++..+|+|++|.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999984 46788899999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHH
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eL 1119 (1139)
+++|+|||||||||+||+.++..|++.|++... +.++|+|+||||++++..||||+||++|+|+|+|+|+||
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~--------~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPE--------RYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGG--------GGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhh--------hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999987641 224569999999999999999999999999999999999
Q ss_pred hhccCChHHHHHH
Q 048639 1120 VAESQGVYSRLYQ 1132 (1139)
Q Consensus 1120 l~~~~g~f~~l~~ 1132 (1139)
+++ +|.|++||+
T Consensus 239 l~~-~~~y~~l~~ 250 (251)
T d1jj7a_ 239 MEK-KGCYWAMVQ 250 (251)
T ss_dssp HHH-TSHHHHHHC
T ss_pred HhC-CcHHHHHhc
Confidence 987 899999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.5e-66 Score=554.45 Aligned_cols=239 Identities=38% Similarity=0.699 Sum_probs=226.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+|+|++. .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999743 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 966 LVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
||||||.+|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998874 4678999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+++.|++.|++.. +++ |+|+||||++++..||||+||++|+|+|+|+|+||+++ +
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~---------~~~-Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~ 228 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLM---------KGR-TTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-H 228 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH---------TTS-EEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-C
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHc---------CCC-EEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-C
Confidence 999999999999999999999999875 444 59999999999999999999999999999999999987 8
Q ss_pred ChHHHHHHHHhhc
Q 048639 1125 GVYSRLYQLQAFS 1137 (1139)
Q Consensus 1125 g~f~~l~~~~~~~ 1137 (1139)
+.|++|++.|...
T Consensus 229 ~~y~~l~~~Q~~~ 241 (242)
T d1mv5a_ 229 PLYAKYVSEQLTV 241 (242)
T ss_dssp HHHHHHHHCCCCC
T ss_pred hHHHHHHHHHhhC
Confidence 9999999987643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.2e-65 Score=546.29 Aligned_cols=242 Identities=52% Similarity=0.827 Sum_probs=234.1
Q ss_pred CCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 332 (1139)
.++.|+++||+|+|+++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 45789999999999864 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 333 KNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
++|+||+|+|++|++||+|||.+|.+..++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
+|+|||||||||+||++++..+.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|+++|.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999997
Q ss_pred hcc
Q 048639 493 MQN 495 (1139)
Q Consensus 493 ~~~ 495 (1139)
.|.
T Consensus 252 ~Q~ 254 (255)
T d2hyda1 252 IQN 254 (255)
T ss_dssp TTT
T ss_pred HcC
Confidence 664
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-64 Score=537.61 Aligned_cols=239 Identities=45% Similarity=0.750 Sum_probs=229.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
+|+|+||||+|++. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 38999999999754 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+||||+|++|++||+|||.++.+..+++++..+++.+++.+++..+|.|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHHhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTMQ 494 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 494 (1139)
|||||||||+||+.+++.+.+.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|+||+++ ++.|+++|+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999998889999999999999989999999999999999999999976 56899999765
Q ss_pred c
Q 048639 495 N 495 (1139)
Q Consensus 495 ~ 495 (1139)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-63 Score=535.55 Aligned_cols=243 Identities=48% Similarity=0.760 Sum_probs=232.5
Q ss_pred CCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 252 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
...+.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+++.+++.+++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 345789999999999864 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
|++|+||||+|++|++|+++|+.++.+ ..+++++.++++.+++.++++.+|+|++|.++++|.+|||||||||+|||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999975 5688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHH
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 490 (1139)
+++|+|||||||||+||+.+++.+++.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|+++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l 247 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHH
Confidence 99999999999999999999999999999988899999999999999899999999999999999999999999999999
Q ss_pred Hhhcc
Q 048639 491 FTMQN 495 (1139)
Q Consensus 491 ~~~~~ 495 (1139)
|..|.
T Consensus 248 ~~~Q~ 252 (253)
T d3b60a1 248 HKMQF 252 (253)
T ss_dssp HHHTC
T ss_pred HHHcc
Confidence 98763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-63 Score=531.59 Aligned_cols=241 Identities=40% Similarity=0.713 Sum_probs=228.3
Q ss_pred CCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 252 KIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 252 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
..++.|+|+||||+||++++.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 34578999999999987666779999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
|++|+||+|+|++|++||+|||.+|. +....+++..++..+++.+++..+|+|++|.++++|.+|||||||||+|||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999985 35677888899999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHH
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYN 488 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 488 (1139)
+++|+|+|||||||+||+.++..+++.|.++.+ ++|+|+||||++.++.||||++|++|+|+++|+|+||+++++.|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 999999999999999999999999999987653 899999999999998999999999999999999999999999999
Q ss_pred HHHh
Q 048639 489 RLFT 492 (1139)
Q Consensus 489 ~~~~ 492 (1139)
++++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 8874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5e-63 Score=528.82 Aligned_cols=237 Identities=46% Similarity=0.765 Sum_probs=226.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++||||+|++ .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++||
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999975 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||+|++|++||+||+.++. +..++++++++++.+.+.+++..+|++++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999884 4567888999999999989999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
|||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||||++|++|+|+++|+|+||+++++.|++++..|.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q~ 239 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHHHh
Confidence 99999999999999999999999998889999999999999988999999999999999999999999999999997653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-54 Score=470.04 Aligned_cols=219 Identities=28% Similarity=0.448 Sum_probs=196.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|.|+|++|.+ .|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 457777776533 4799999999999999999999999999999999999999999999998 4
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++||++||.++. ..++.+++++++.+++.+++..+|+++++.+++.|.+|||||||||||||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 89999999999999999999984 57788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+|||||||||+||+.+++.|++.+.... ..++|+|+||||++.+..||||+||++|+|+++|+|+||++.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~---------~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~- 247 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKL---------MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL- 247 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCC---------TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHh---------hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-
Confidence 9999999999999999999987643322 334469999999999999999999999999999999999976
Q ss_pred CChHHHHH
Q 048639 1124 QGVYSRLY 1131 (1139)
Q Consensus 1124 ~g~f~~l~ 1131 (1139)
++.|++.+
T Consensus 248 ~~~~~~~~ 255 (281)
T d1r0wa_ 248 RPDFSSKL 255 (281)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 66776654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.9e-52 Score=437.82 Aligned_cols=217 Identities=28% Similarity=0.509 Sum_probs=193.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+.+++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 389999999999999999999999999999999999999999999999999987764 78999
Q ss_pred EEcccccccc-ccHHHHhccCCC---cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNE---AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~---~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
||||+|.||. -|++|||.++.. ...++++.++++.+++.++.++. ...||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCC-----------hhhCCHHHhcchhhhhhhhc
Confidence 9999999996 499999987531 23567899999999987765443 34699999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+|+|||||||||+||+.+.+.|++.|++... +.++|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~--------~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHK--------KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHH--------HTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHh--------cCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999988641 235679999999999987 9999999999999999999999
Q ss_pred hccCChH
Q 048639 1121 AESQGVY 1127 (1139)
Q Consensus 1121 ~~~~g~f 1127 (1139)
++|...|
T Consensus 217 ~~P~~~~ 223 (229)
T d3d31a2 217 EKPVEGR 223 (229)
T ss_dssp SSCCTTH
T ss_pred hCCCCHH
Confidence 8876655
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.9e-52 Score=437.46 Aligned_cols=221 Identities=26% Similarity=0.497 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++++.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999995 45799999999999999999999999999999999999999999999999999988764 6789
Q ss_pred eEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
|||||+|.||. .|++||+.++.. ..+ ++.+.++++.+++.++.++.| ..||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHh
Confidence 99999999995 699999998642 233 345677889999887655544 579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+.+|+|||||||||+||+.+...|++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~--------~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~ 221 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--------KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 221 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999998641 224569999999999977 999999999999999999
Q ss_pred hHHhhccCChHHH
Q 048639 1117 STLVAESQGVYSR 1129 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~ 1129 (1139)
+|++++|...|-+
T Consensus 222 ~el~~~P~~~~~~ 234 (239)
T d1v43a3 222 TEVYLRPNSVFVA 234 (239)
T ss_dssp HHHHHCCSBHHHH
T ss_pred HHHHhCCCCHHHH
Confidence 9999988777643
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-52 Score=441.81 Aligned_cols=224 Identities=29% Similarity=0.467 Sum_probs=196.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHHHh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRRLR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~lR 961 (1139)
.|+++||+++|+.. +..||+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 457999999999999999999999999999999999999999999999999998765 44567
Q ss_pred hhceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++||||||+|.||+. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHH
Confidence 889999999999965 99999987632 222 356888999999987765554 469999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+|||||||||+||+.+...|++.|+++. + ..++|+|+|||+++.+.. ||||++|++|+|++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~-------~-~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~ 222 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ-------S-RLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV 222 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH-------H-HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHH-------h-ccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998864 1 224569999999999876 999999999999999
Q ss_pred cChhHHhhccCChHH
Q 048639 1114 GSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f~ 1128 (1139)
|+|+|++++|...|-
T Consensus 223 g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 223 GKPEDLYDNPVSIQV 237 (242)
T ss_dssp ECHHHHHHSCSSHHH
T ss_pred cCHHHHHhCCCCHHH
Confidence 999999998877764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-52 Score=457.80 Aligned_cols=219 Identities=29% Similarity=0.449 Sum_probs=196.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+|+|++|. ++|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 34666666542 34799999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|++|++||+|||.+|. ...+.+...+++.+.+.+++..+|+++++.++++|.+|||||||||+|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999986 45677788888888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 415 PILLLDEATSALDSESEKLVQEA-LERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
+|||||||||+||+.++..+++. +..+.+++|+|+||||++.++.||||++|++|+|++.|+|+||++..+.|...+.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHHc
Confidence 99999999999999999888765 4445568999999999999988999999999999999999999987777766553
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-52 Score=435.53 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=166.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceee
Confidence 78999999995 3579999999999999999999999999999999999999999999999999998775 467899
Q ss_pred EEccccccccc-cHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
||||+|.||.. |++||+.++.. ...++++.++++.+++.++.++.| .+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999955 99999987632 112456889999999987766554 4699999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChh
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~ 1117 (1139)
|+.+|+||+||||||+||+.+.+.|++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|+
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~--------~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~ 216 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK--------RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 216 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999987641 235569999999999988 9999999999999999999
Q ss_pred HHhhccCChHH
Q 048639 1118 TLVAESQGVYS 1128 (1139)
Q Consensus 1118 eLl~~~~g~f~ 1128 (1139)
|++++|...|-
T Consensus 217 el~~~P~~~~v 227 (232)
T d2awna2 217 ELYHYPADRFV 227 (232)
T ss_dssp HHHHSCSBHHH
T ss_pred HHHhCCCCHHH
Confidence 99998877764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-52 Score=439.23 Aligned_cols=224 Identities=31% Similarity=0.491 Sum_probs=195.5
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+..++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975422 25899999999999999999999999999999999999999999999999999888664 67
Q ss_pred hhceEEccccccccc-cHHHHhccC-----CC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYG-----NE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~-----~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++||+|||+|.+|+. |++||+.++ .+ ...++++.+++++++|.++.++.| .+||||||||+|
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 889999999999965 999999763 11 112467889999999877644433 479999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+||||||||++||+.+...|++.|++... +.++|+|+|||+++.+.. ||||+||++|+|+|.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~--------~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~ 222 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINR--------RLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHH--------HHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHh--------ccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999998741 225669999999999987 999999999999999
Q ss_pred cChhHHhhccCChHH
Q 048639 1114 GSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f~ 1128 (1139)
|+|+|++++|...|.
T Consensus 223 G~~~ei~~~P~~~~t 237 (240)
T d3dhwc1 223 DTVSEVFSHPKTPLA 237 (240)
T ss_dssp EETTTTTCSSCCTTT
T ss_pred CCHHHHHhCCCChHH
Confidence 999999988776653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-51 Score=432.63 Aligned_cols=216 Identities=27% Similarity=0.452 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+|+...++. +++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999996 35699999999999999999999999999999999999999999999999999887754 5689
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFT-GSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||||+|.||+ .||+||+.++.. ..+.+++.+ .+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 99999999996 599999998753 233333322 233456666 56667788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|+|||||||||+||+.+...+++.++++. + |+|+|+|||+++.+.. ||||++|++|+|+++|+++++.++
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999874 3 8999999999999976 999999999999999999999765
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.4e-52 Score=438.86 Aligned_cols=222 Identities=26% Similarity=0.463 Sum_probs=194.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH----H
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR----L 960 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~----l 960 (1139)
.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 357999999999999999999999999999999999999999999999999998776544 3
Q ss_pred hhhceEEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 961 RSQIGLVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
|++||+|||+|.||+. |++||+.++.. .. .++++.++++.+++.++..+.| ..||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHH
Confidence 6789999999999965 99999987521 12 2345888999999987655443 57999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+.+|+||||||||++||+.+...|++.|+++.. ..++|+|+|||+++.+.. ||||+||++|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~--------~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~ 220 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR--------QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHh--------ccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999987641 225679999999999987 99999999999999
Q ss_pred ecChhHHhhccCChHH
Q 048639 1113 MGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1113 ~G~~~eLl~~~~g~f~ 1128 (1139)
.|+|+|++++|...|-
T Consensus 221 ~G~~~el~~~P~~~~~ 236 (240)
T d1g2912 221 VGSPDEVYDKPANTFV 236 (240)
T ss_dssp EECHHHHHHSCSBHHH
T ss_pred EcCHHHHHhCCCCHHH
Confidence 9999999998776664
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.2e-51 Score=431.72 Aligned_cols=210 Identities=33% Similarity=0.537 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|+|++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999963 389999999999999999999999999999999999999999999999999887765 67899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
||||++.||+. ||+||+.++.. ....+++.++ ++.+ |+.......+.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDT---------ARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHH---------HHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHH---------HHHh--cchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence 99999999965 99999988632 1223333333 3333 45555677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.+...+++.++++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999864 38899999999999876 999999999999999999999764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-52 Score=434.43 Aligned_cols=215 Identities=31% Similarity=0.517 Sum_probs=156.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 68999999996 35699999999999999999999999999999999999999999999999999877754 57899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
||||+|.||+. ||+||+.++.... +.++. ...+.+.++.+ ++.......+.+||||||||++|||||+.+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~-----~~~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVI-----NQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp EECSSCCC---------------------CHH-----HHHHHHHHHHC-----------------------CHHHHHHTC
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 9999999874311 11111 11223445554 344455667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|++||||||||+||+.+...+++.++++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999998863 48999999999999877 999999999999999999999764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-51 Score=435.05 Aligned_cols=220 Identities=26% Similarity=0.444 Sum_probs=191.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---HHHHh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKSLR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 332 (1139)
.|+++|++++|+++ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 357999999999999999999999999999999999999999999999999987654 34457
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++||||||+|.||+. ||+|||.++.. ..+.+++.+. +.+.++.+ |++......+.+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHH-----HHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhH
Confidence 889999999999975 99999998743 2333333322 23455555 56666788889999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++||||||||+||+.+...+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.++
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998874 3 8999999999999866 999999999999999999999764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-51 Score=433.20 Aligned_cols=214 Identities=31% Similarity=0.514 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----
Q 048639 257 IDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL---- 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 331 (1139)
|+++||+++|+.... ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975321 247999999999999999999999999999999999999999999999999999987764
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGN-----MDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi 404 (1139)
|++||||||+|.|++. ||+||+.++. +..+.++..+. +.+.++.+ |+.. .....+.+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHH-----HHHHHHhh--chhhhhhcCChhhCCHHHHHHH
Confidence 4579999999999865 9999998752 22333333222 22334433 3322 34567889999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecCh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 477 (1139)
+|||||+.+|+|||||||||+||+.++..+++.++++. .|+|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999874 38999999999998877999999999999999864
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-51 Score=430.10 Aligned_cols=220 Identities=30% Similarity=0.520 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 257 IDIRDVCFAYPSRPD-QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~-~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
|+++|++++|+.+.. ..+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975422 25899999999999999999999999999999999999999999999999998887654 56
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++||||||++.+|+. ||+|||.++.. ..+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~-----v~~~L~~v--gL~~~~~~~~~~LSGG~~QRvaiAra 154 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHH-----HHHHHHHH--STTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHhhh
Confidence 789999999999975 99999987521 1222222211 12233333 44445677788999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++++
T Consensus 155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~ 231 (240)
T d3dhwc1 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231 (240)
T ss_dssp HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCS
T ss_pred hccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999874 3 8999999999999976 999999999999999999999764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.8e-51 Score=430.90 Aligned_cols=218 Identities=28% Similarity=0.477 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH----H
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS----L 331 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 331 (1139)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999996 356999999999999999999999999999999999999999999999999987655433 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
|++||||||+|.||+. ||+||+.++.. ..+.++..+.. .+.++.+ |+.......+.+||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v-----~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-----REVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH-----HHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHH
Confidence 6789999999999976 99999998632 22333332222 2333333 3444567788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||+.+|+||||||||++||+.+...+++.++++. + |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++.+
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998874 3 8999999999999877 999999999999999999999764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.5e-51 Score=428.26 Aligned_cols=212 Identities=32% Similarity=0.456 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCC-cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----
Q 048639 886 IEFQNIKFNYPSRPE-VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL---- 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l---- 960 (1139)
|+++||+++|+.... ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999974321 248999999999999999999999999999999999999999999999999999998765
Q ss_pred hhhceEEcccccccc-ccHHHHhccCC-----CcCCH----HHHHHHHHHcCchHH-HhhCCCCccccccCCCCCCChHH
Q 048639 961 RSQIGLVQQEPLLFS-CSIRNNICYGN-----EAASE----AEIVEVSKKANIHDF-ISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~-gTIreNL~~~~-----~~~sd----~ei~~al~~~~l~~~-i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
|++||||||+|.||+ -|++||+.++. +..+. +++.+.++.+++.+- ..+. ..+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------p~~LSGGq 150 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----------PNQLSGGQ 150 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----------GGGSCHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCC-----------hhhCCHHH
Confidence 357999999999885 59999987631 22332 346667777777542 2222 35799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCE
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ 1109 (1139)
|||+||||||+.+|+|||||||||+||+.+.+.|++.|+++.. ..++|+|+|||+++.+..||||++|++|+
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~--------~~g~tii~vTHd~~~a~~~drv~~m~~G~ 222 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE--------EDGKTVVVVTHDINVARFGERIIYLKDGE 222 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------TTCCEEEEECSCHHHHTTSSEEEEEETTE
T ss_pred HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH--------hhCCEEEEECCCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999998741 33567999999999887799999999999
Q ss_pred EEEecCh
Q 048639 1110 VVEMGSH 1116 (1139)
Q Consensus 1110 ive~G~~ 1116 (1139)
|++.|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999975
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.5e-50 Score=429.12 Aligned_cols=222 Identities=27% Similarity=0.442 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL------- 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l------- 957 (1139)
.|+++||+++|. +.+||+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 3579999999999999999999999999999999999999999999999999976532
Q ss_pred ------HHHhhhceEEcccccccc-ccHHHHhccCC---CcC----CHHHHHHHHHHcCchHHHh-hCCCCccccccCCC
Q 048639 958 ------RRLRSQIGLVQQEPLLFS-CSIRNNICYGN---EAA----SEAEIVEVSKKANIHDFIS-SLPDGYDTVVGEKG 1022 (1139)
Q Consensus 958 ------~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~---~~~----sd~ei~~al~~~~l~~~i~-~lp~gldt~v~e~G 1022 (1139)
..+|++||+|||+|.+|. -|+++|+.++. ... .++.+.++++++++.+... +.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------
Confidence 357889999999999996 59999987541 112 2356788899999977543 233
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~Dr 1101 (1139)
.+||||||||+||||||+.+|+||||||||++||+.+.+.|++.|++.. ++++|+|+|||+++.+.. |||
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~---------~~g~til~vtHdl~~~~~~adr 218 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA---------EEGKTMVVVTHEMGFARHVSSH 218 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---------HTTCCEEEECSCHHHHHHHCSE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhc---------ccCCceEEEeCCHHHHHHhCCE
Confidence 4699999999999999999999999999999999999999999999875 334569999999999987 999
Q ss_pred EEEEeCCEEEEecChhHHhhccCChHHH
Q 048639 1102 IVVMDKGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1102 I~vl~~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
|+||++|+|+|.|+|+|++++|...|.+
T Consensus 219 i~vm~~G~iv~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 219 VIFLHQGKIEEEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EEEEETTEEEEEECHHHHHHSCCSHHHH
T ss_pred EEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 9999999999999999999988777653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-48 Score=420.46 Aligned_cols=218 Identities=29% Similarity=0.514 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC--------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD-------- 327 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-------- 327 (1139)
.|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999963 46999999999999999999999999999999999999999999999999986432
Q ss_pred -----HHHHhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc-cccCCCCC
Q 048639 328 -----LKSLRKNIGAVSQEPSLFTG-SLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTEL-GQRGVQLS 397 (1139)
Q Consensus 328 -----~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i-~~~g~~LS 397 (1139)
...+|++||||||+|.+|+. ||+||+.++. ...+..+..+. +.+.++.+ |+.... ...+.+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhccCccccc
Confidence 23567889999999999975 9999998752 22333333222 22345554 333322 44578999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|+|+++|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999998875 58999999999999876 9999999999999999
Q ss_pred Chhhhhcc
Q 048639 476 THHSLLQT 483 (1139)
Q Consensus 476 ~~~~l~~~ 483 (1139)
+++|++++
T Consensus 232 ~~~ev~~~ 239 (258)
T d1b0ua_ 232 DPEQVFGN 239 (258)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3e-48 Score=413.54 Aligned_cols=219 Identities=27% Similarity=0.480 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+.. |..
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 5899999999963 469999999999999999999999999999999999999999999999999999887765 446
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDA-DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|+|+||++.+|+. |++||+.++.... ..+...+..... +..++ ++.......+.+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHhh-ChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999975 9999998864321 112222222111 11111 22233456778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++|||||||++||+.+...+.+.++++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999874 58999999999999876 999999999999999999999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.6e-48 Score=412.98 Aligned_cols=215 Identities=22% Similarity=0.406 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh-h
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS-Q 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~ 963 (1139)
-|+++||+++|. +..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 489999999995 356999999999999999999999999999999999999999999999999999998877644 4
Q ss_pred ceEEccccccccc-cHHHHhccCCC-cCC----HHHHHHHHHHc-CchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE-AAS----EAEIVEVSKKA-NIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~-~~s----d~ei~~al~~~-~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++++||++.+|+. |++||+.++.. ... ++++.++++.. ++.+. .+. ...+||||||||++||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~----~~~~LSGG~~Qrv~iA 151 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQ----LGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTS----BSSSSCHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHH-------HhC----chhhCCHHHHHHHHHH
Confidence 8999999999975 99999976531 111 22333444332 23222 232 3457999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+.+|+||||||||++||+.+...|++.|++.. ++++|+|+|+|+++.+.. ||||+||++|+|++.|+
T Consensus 152 raL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~---------~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN---------QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999875 345669999999999877 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
|+|++++
T Consensus 223 ~~el~~~ 229 (240)
T d1ji0a_ 223 ASELLDN 229 (240)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9999975
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-48 Score=416.07 Aligned_cols=217 Identities=22% Similarity=0.431 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh-cc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR-KN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 334 (1139)
-|+++|+|++|++ ..+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++.+.+ ..
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999887765 45
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC---------------CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNMDA---------------DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~~~---------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
|+|+||+|.+|.. ||+||+.++.... ..++.. ..+.+.++.+ ++.........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH-----HHHHHHHHhc--CcchhccCchhhCCc
Confidence 9999999998865 9999999863211 111111 1222344444 445556677889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecC
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 476 (1139)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||||++|++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999998874 58999999999999876 99999999999999999
Q ss_pred hhhhhc
Q 048639 477 HHSLLQ 482 (1139)
Q Consensus 477 ~~~l~~ 482 (1139)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHhh
Confidence 998754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5e-48 Score=405.73 Aligned_cols=219 Identities=29% Similarity=0.496 Sum_probs=187.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
+++ ++..+|.+ . .+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 455 56777742 2 24 7999995 689999999999999999999999999999999999999988764 78999
Q ss_pred EEcccccccc-ccHHHHhccCCCcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 966 LVQQEPLLFS-CSIRNNICYGNEAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 966 ~V~Qdp~LF~-gTIreNL~~~~~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
||||+|.||+ -||+|||.++....+ ++.+.++++.+++.++.++.| ..||||||||++|||||+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHT
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 9999999996 599999998754333 345788888888877655544 579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
.+|+||+||||||+||+.+...|++.|++... ..++|+|+|||+++.+.. ||||+||++|+|+++|+|+|+
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~--------~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el 214 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--------EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH--------HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred ccCCceEecCccccCCHHHHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHH
Confidence 99999999999999999999999999987641 224569999999999987 999999999999999999999
Q ss_pred hhccCChHHHHHH
Q 048639 1120 VAESQGVYSRLYQ 1132 (1139)
Q Consensus 1120 l~~~~g~f~~l~~ 1132 (1139)
++.++...++++.
T Consensus 215 ~~~~~~~v~~fl~ 227 (240)
T d2onka1 215 FSAKNGEVAEFLS 227 (240)
T ss_dssp HHSCCSSHHHHGG
T ss_pred hcCCCHHHHHHhC
Confidence 9887777666654
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.4e-48 Score=416.24 Aligned_cols=215 Identities=23% Similarity=0.390 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh-h
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS-Q 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~ 963 (1139)
-|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+..+.++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 389999999995 357999999999999999999999999999999999999999999999999999999998765 4
Q ss_pred ceEEcccccccc-ccHHHHhccCCC---------------cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCC
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNE---------------AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC 1023 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~---------------~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1023 (1139)
|+++||+|.+|. -|++||+.++.. ... .+++.++++..++.+.. |.+ ..
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-------DRK----AG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-------TSB----GG
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-------cCc----hh
Confidence 999999998885 599999987521 011 13455566666665432 223 34
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEE
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVI 1102 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI 1102 (1139)
+||||||||++|||||+.+|++|||||||++||+.+.+.|++.|++.. .+++|||+|+|+++.+.. ||||
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~---------~~g~til~vsHdl~~~~~~~Drv 220 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK---------AKGITFLIIEHRLDIVLNYIDHL 220 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCCSTTGGGCSEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEeCcHHHHHHhCCEE
Confidence 699999999999999999999999999999999999999999999875 345679999999999976 9999
Q ss_pred EEEeCCEEEEecChhHHhhc
Q 048639 1103 VVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1103 ~vl~~G~ive~G~~~eLl~~ 1122 (1139)
+||++|+|++.|+|+|+.++
T Consensus 221 ~vm~~G~iv~~g~~~e~~~~ 240 (254)
T d1g6ha_ 221 YVMFNGQIIAEGRGEEEIKN 240 (254)
T ss_dssp EEEETTEEEEEEESHHHHHH
T ss_pred EEEeCCEEEEEecHHHHhhc
Confidence 99999999999999998653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.4e-48 Score=409.45 Aligned_cols=217 Identities=24% Similarity=0.403 Sum_probs=188.1
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.++|.|+.+ ....+|++
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 6799999999995 3579999999999999999999999999999999999999999999999999987 45788999
Q ss_pred ceEEccccccccc-cHHHHhccCCC--cCCHH----HHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE--AASEA----EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~--~~sd~----ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||++.+|.. |++||+.+... ..+++ .+.++++..++.++... ...+||||||||++||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 145 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhh-----------hhhhCCHHHHHHHHHH
Confidence 9999999988854 99999965421 12333 45556666666655432 2357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+.+|+||||||||++||+.+.+.|++.|++.. .+++|||++||+++.+.. ||||+||++|+|++.|+
T Consensus 146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~---------~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS---------QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 216 (238)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999875 345669999999999987 99999999999999999
Q ss_pred hhHHhhccC
Q 048639 1116 HSTLVAESQ 1124 (1139)
Q Consensus 1116 ~~eLl~~~~ 1124 (1139)
|+||.++.+
T Consensus 217 ~~el~~~~~ 225 (238)
T d1vpla_ 217 VEELKERYK 225 (238)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhccC
Confidence 999987543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-47 Score=407.60 Aligned_cols=217 Identities=26% Similarity=0.431 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
|.|+++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+ ....+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 4699999999996 3569999999999999999999999999999999999999999999999999876 45678899
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++||||++.+|.. |++||+.+... ..+..++.+... ..++.+ +++....++..+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE-----RATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHH-----HHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 9999999999865 99999976421 223444433332 223333 4556677788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|+||||||||++||+.+++.+.+.++++. +|+|||++||+++.+.. ||||++|++|+|++.|+++++.+
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999998864 58999999999999986 99999999999999999999964
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-47 Score=401.10 Aligned_cols=211 Identities=27% Similarity=0.455 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
+++ ++.++|++- .+ ||||+++ +|+++|+||||||||||+++|+|+++|++|+|.++|+++.++++. |++||
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 556 567888531 34 8999995 689999999999999999999999999999999999999887754 67899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||++.||+. ||+|||.|+.......+..+ .+.+.++.+ |+.......+.+||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHH-----HHHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 99999999975 99999999865555444332 234556666 66777888999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+||||||||+||+.++..+++.++++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcC
Confidence 9999999999999999999999988743 8999999999999876 999999999999999999999754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-43 Score=376.63 Aligned_cols=209 Identities=22% Similarity=0.380 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+...+.+.++.+.+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899998665 599999999999999999999999999999999986 68999999999999999999999999
Q ss_pred EEccccc-cccccHHHHhccCCCcC-CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC--
Q 048639 966 LVQQEPL-LFSCSIRNNICYGNEAA-SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK-- 1041 (1139)
Q Consensus 966 ~V~Qdp~-LF~gTIreNL~~~~~~~-sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr-- 1041 (1139)
+++|+.. .|..++.+|+.++.... ..+.+.++++..++.+++ +....+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHh-----------CcChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999886 46788999998765433 355677888888776543 23345799999999999999997
Q ss_pred -----CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1042 -----RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1042 -----~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
+|+||||||||++||+.+.+.|.+.|++.. +.++|||+++|+++.+.+ ||||+||++|+|++.|+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~---------~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC---------QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHH---------HTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECC
Confidence 779999999999999999999999999875 445679999999998876 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
|+|++++
T Consensus 216 ~~ev~~~ 222 (231)
T d1l7vc_ 216 REEVLTP 222 (231)
T ss_dssp HHHHSCH
T ss_pred HHHHhCC
Confidence 9999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-43 Score=372.28 Aligned_cols=209 Identities=23% Similarity=0.398 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
++++||+++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...+...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899997543 699999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCHHH-HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc--
Q 048639 337 AVSQEPSL-FTGSLMDNIKVGNMDADDEQ-IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK-- 412 (1139)
Q Consensus 337 ~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~-- 412 (1139)
|++|+... |..++.+|+.++.......+ +.+ .+..+ +++..++.++.+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------~~~~~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLND---------VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHH---------HHHHT--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHH---------HHHhc--CCHhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 99998764 66799999988765443332 222 23333 45566788889999999999999999997
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 -----NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 -----~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|+||||||||++||+.++..+.+.++++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|++..+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 779999999999999999999999998864 58999999999998765 9999999999999999999997643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.8e-40 Score=342.32 Aligned_cols=191 Identities=21% Similarity=0.423 Sum_probs=153.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|+||+|+ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 369999999999999999999999999999999999999999999999998753 57889
Q ss_pred EEEecCCCCCcc-cHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVG----NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+|+||++.++.. |++||+.+. ....+.+++.++.+... +. + +.++..+||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------~~-~----~~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-------VL-D----LKKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-------CC-C----TTSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcC-------Cc-c----cccccCcCCCcHHHHHHHHHHH
Confidence 999999988755 999998643 22344555544433221 11 1 2345668999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
+.+|+++||||||++||+.+++.+++.+.+..+++++++++|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999998875433333333332 2456999988753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.2e-40 Score=339.77 Aligned_cols=191 Identities=23% Similarity=0.397 Sum_probs=159.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ .+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999993 369999999999999999999999999999999999999999999999998764 68899
Q ss_pred eEEcccccccc-ccHHHHhccC----CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLLFS-CSIRNNICYG----NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~LF~-gTIreNL~~~----~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|+||++.++. -|+++|+.+. ....+++++.++++..++.+ ++..+ .+||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccccc----CcCCCcHHHHHHHHHHH
Confidence 99999998875 4899998532 23567889999998887643 23333 36999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
+++|+|+||||||++||+++.+.+++.|.+... .+++++|+..|. +..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~--------~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK--------EKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH--------HHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHh--------CCCEEEEEEech---hhhcchhhheee
Confidence 999999999999999999999999999987641 223434444443 456999999853
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=3.1e-23 Score=231.82 Aligned_cols=315 Identities=16% Similarity=0.191 Sum_probs=279.2
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
++++| .+.++.++.++++.++..+.++..+..++++..+++............++.++++++.++..++.+++.++...
T Consensus 4 ~krl~-~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (319)
T d3b60a2 4 FRRLW-PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 82 (319)
T ss_dssp HHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 44553 34566777777777777777777777777777777665544444445556677777788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
.+.+...++|+++++++++.|++||+ ++++|++++|+++|++.+...+...+..++..++.+++++++++..+|.+++
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred hhhccccchhhHHHHhhcccchhhcc--ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchh
Confidence 99999999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
++++.+|+..+...+..+...+..++..+...+..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.....+
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999988888888888888888889999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTE 868 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 868 (1139)
........+..+..++++++|++++..|.+++|+++++..+......|+..+......+.++..+.+|+.+++|.++|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred hcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 888888888888889999999999999999999999999999999999999999999999999999999999987765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=1.4e-22 Score=227.03 Aligned_cols=310 Identities=15% Similarity=0.143 Sum_probs=267.1
Q ss_pred hhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh---hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 557 CLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEV----GWYSLAFSLVGLFSLFTHTLQHYFFG 629 (1139)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1139)
.+.++.++.+++++++..+.+......+++++..++....... .... ..+...++++.++..++.+++.++..
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777766666666777777777776544221 1111 11223334455566777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048639 630 VVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMA 709 (1139)
Q Consensus 630 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 709 (1139)
+.+.+...++|.+++++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++..+|.++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHhhhHHHHHHHhhhhhcccccccc--cccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHH
Confidence 999999999999999999999999999 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 710 LVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789 (1139)
Q Consensus 710 lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1139)
++.++.+|+.++...+..+..++..++..+..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+...+.....
T Consensus 165 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~ 244 (323)
T d2hyda2 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (323)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhh
Confidence 99999999999999998888888888888889999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 048639 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTE 868 (1139)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 868 (1139)
.....+...+..+..++.+++|++++..|.+++|.+++...+......++..+...+..+.++..+.+|+.+++|++||
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~e 323 (323)
T d2hyda2 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYD 323 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred hhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 8888888888889999999999999999999999999998888888999999999999999999999999999987653
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=1.7e-20 Score=209.15 Aligned_cols=232 Identities=16% Similarity=0.251 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|.++|+++ ++|++++++++|++.+.+.+...+..++..+..++++++++++++|
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 78 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccchhhHHHHhhcccchhhcccc-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 4444555555444 88999999997 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++|+..++...+.++..+..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
...+...+...++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.++.+|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999988888888888888999999999999999999999999999999999999999999999999999999999977
Q ss_pred CC
Q 048639 239 PR 240 (1139)
Q Consensus 239 ~~ 240 (1139)
||
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.87 E-value=9.3e-21 Score=211.97 Aligned_cols=232 Identities=17% Similarity=0.168 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|.+||+++ ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (323)
T d2hyda2 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhHHHHHHHhhhhhcccccccccc-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 3444555555433 78999999997 8999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.++++.++.+|+..++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..
T Consensus 162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 241 (323)
T d2hyda2 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (323)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
........+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.++.+|+.++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999888888888888889999999999999999999999999998989999999999999999999999999999876
Q ss_pred CC
Q 048639 239 PR 240 (1139)
Q Consensus 239 ~~ 240 (1139)
|+
T Consensus 322 ~e 323 (323)
T d2hyda2 322 YD 323 (323)
T ss_dssp CS
T ss_pred CC
Confidence 53
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=1.8e-18 Score=176.11 Aligned_cols=171 Identities=9% Similarity=0.040 Sum_probs=115.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
||+|+||+|||||||++.|+|+++|..|.+.++|.+....+.+.......+.++.+.++..+...+...+......+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence 799999999999999999999999999999999877655443322223334444455554444443332211111111
Q ss_pred HHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCC--HHHHHHHHHHHHhhCCC
Q 048639 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD--AESERVIVSALEALNPK 1073 (1139)
Q Consensus 996 ~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD--~~te~~I~~~l~~~~~~ 1073 (1139)
..+|+|++|+.++++++.++|++|++|||+...+ .+....+.+.++
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~----- 127 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH----- 127 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT-----
T ss_pred ---------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc-----
Confidence 1378999999999999999999999999865433 333333444443
Q ss_pred CCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1074 SSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1074 ~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
..++|+|+++|+.+....||++..+++|++++-+.. +++..+.+.++
T Consensus 128 -------~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 128 -------DPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp -------CTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred -------cCCCEEEEEEccHHHHHhhceEEEEeCCEEEEECCc-----cHHHHHHHHHH
Confidence 223569999999887778999999999999987642 22445555543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.67 E-value=3.3e-18 Score=174.15 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=104.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY 366 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 366 (1139)
+++|+||||||||||++.|+|+++|+.|.+.+++.+.................+.+.++..+...+...+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYG------- 74 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEE-------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhh-------
Confidence 5899999999999999999999999999999987654332211111111122222222222222222222111
Q ss_pred HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHH-c-CC
Q 048639 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERA-M-QG 444 (1139)
Q Consensus 367 ~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~-~-~~ 444 (1139)
+......+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+. . .+
T Consensus 75 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 75 ----------------------VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ----------------------ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred ----------------------cCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 111123588999999999999999999999999865432 223334444443 3 36
Q ss_pred CeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 445 RTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 445 ~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
+|+|+++|+.+....+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 89999999988777899999999999987653
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=2.9e-11 Score=139.78 Aligned_cols=74 Identities=24% Similarity=0.282 Sum_probs=61.6
Q ss_pred CCCChHHHHHHHHHHH----hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc
Q 048639 1023 CQLSGGQKQRIAIART----LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARA----Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~ 1098 (1139)
..+|||||.+++||-. ...++||++||||+++||+.....+.+.|++.. ...+-+|+|||++.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~---------~~~~Q~I~iTH~~~~~~~ 401 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR---------NPDLQFIVISLKNTMFEK 401 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC---------BTTBEEEEECSCHHHHTT
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---------CCCCEEEEEeCCHHHHHh
Confidence 4679999999887632 346789999999999999999999999998753 223349999999999999
Q ss_pred CCEEEEE
Q 048639 1099 SDVIVVM 1105 (1139)
Q Consensus 1099 ~DrI~vl 1105 (1139)
+|+++.+
T Consensus 402 ad~~~~V 408 (427)
T d1w1wa_ 402 SDALVGV 408 (427)
T ss_dssp CSEEEEE
T ss_pred cccEEEE
Confidence 9998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=1.5e-10 Score=127.57 Aligned_cols=77 Identities=27% Similarity=0.410 Sum_probs=67.1
Q ss_pred CCCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEE--E
Q 048639 393 GVQLSGGQKQRIAIARAI----VKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV--V 466 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal----~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~--l 466 (1139)
-..+|+|||+...++..+ ..+++++++|||-++|+|...+.+.+.|+...++.-+|++||++..+..+|+++. +
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEE
Confidence 357999999998776653 4567999999999999999999999999988888889999999999999999966 5
Q ss_pred eCc
Q 048639 467 EDG 469 (1139)
Q Consensus 467 ~~G 469 (1139)
++|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred eCC
Confidence 666
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.02 E-value=8e-10 Score=121.56 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHH----hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc
Q 048639 1023 CQLSGGQKQRIAIART----LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN 1098 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARA----Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~ 1098 (1139)
..+|+|||+++.++.. ...+++++++|||-++|++.....+.+.|++.. ++.- +|++||++..+..
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~---------~~~Q-viitTHsp~~~~~ 287 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS---------KHTQ-FIVITHNKIVMEA 287 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---------TTSE-EEEECCCTTGGGG
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc---------cCCE-EEEEECCHHHHHh
Confidence 4689999999877664 345679999999999999999999999999875 4445 9999999999999
Q ss_pred CCEEEE--EeCC
Q 048639 1099 SDVIVV--MDKG 1108 (1139)
Q Consensus 1099 ~DrI~v--l~~G 1108 (1139)
+|+++. |++|
T Consensus 288 ~d~~~~v~~~~g 299 (308)
T d1e69a_ 288 ADLLHGVTMVNG 299 (308)
T ss_dssp CSEEEEEEESSS
T ss_pred cccEEEEEEeCC
Confidence 999955 6777
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.1e-07 Score=108.94 Aligned_cols=73 Identities=26% Similarity=0.365 Sum_probs=62.7
Q ss_pred CCCChHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEecCccchhccCEEEEE
Q 048639 394 VQLSGGQKQRIAIARAI----VKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRMSTIVNADMIAVV 466 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal----~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l 466 (1139)
..||||||.+++||-.+ +.++|+++||||+++||+.+...+.+.|.+... +.-+|+|||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 56899999998876443 568899999999999999999999999987753 45699999999999999998765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=9.5e-06 Score=80.42 Aligned_cols=134 Identities=13% Similarity=0.012 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC------CcC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN------EAA 989 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~------~~~ 989 (1139)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++..... ...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccc
Confidence 48999999999999999999999877666665554443222222222333344444333222222222111 111
Q ss_pred CHHHHHHHHHHcCchHHHhhC-CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 048639 990 SEAEIVEVSKKANIHDFISSL-PDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~l-p~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEa 1051 (1139)
..+++.+.... ..+.+... ..+.+..+.+.....+......+.+-+.++..++++++...
T Consensus 83 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (189)
T d2i3ba1 83 DLTSFEQLALP--VLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTI 143 (189)
T ss_dssp CHHHHHTTTTT--TTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEEC
T ss_pred cHHHHHHHHHH--HHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEecc
Confidence 22333222111 11111111 23455555555556777777888888888888877665443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.00 E-value=0.0014 Score=66.54 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=32.5
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHc-CCCeEEEEecCccchh
Q 048639 412 KNPPILLLDEATSALDSESEKLVQE-ALERAM-QGRTVILIAHRMSTIV 458 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~-~l~~~~-~~~tvi~itH~~~~~~ 458 (1139)
.+..++|+||...+=|+.....+.. .++.+. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3456999999999999976543333 333332 3778999999876544
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=8.4e-06 Score=80.80 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
.+.|+||+|||||||++.+.+.+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5889999999999999999999987766665433
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0029 Score=64.59 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=31.2
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHc-C-CCeEEEEecCccch
Q 048639 412 KNPPILLLDEATSALDSESEKLVQ-EALERAM-Q-GRTVILIAHRMSTI 457 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~-~-~~tvi~itH~~~~~ 457 (1139)
.+..++|+||+..+=|+.....+. ..+..+. + +..+|++||..+..
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 344599999999999997665544 3444442 3 45778888866543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.86 E-value=0.00019 Score=70.83 Aligned_cols=27 Identities=37% Similarity=0.525 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
|.++.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999888753
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.70 E-value=0.0022 Score=67.49 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
-|+++..=+.+|+++.|.|++|+|||||+.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5666654588999999999999999999887764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.00034 Score=69.01 Aligned_cols=66 Identities=27% Similarity=0.304 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEE----------EECCcccCCCChHHHhhhceEEccccccccccHHHHh
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGII----------LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI 982 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I----------~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL 982 (1139)
|..+.|+||||||||||++.|..-++.....+ ..||+|-.-++.+...+. +.++-++-.+....|.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~---~~~~~f~e~~~~~~~~ 77 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL---IDQGELLEWAEIHGGL 77 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEEGGGT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhh---hcccccchhhhcccCc
Confidence 88999999999999999999987664322222 236666655565555443 2333334344444454
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.00045 Score=69.70 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 317 (1139)
+|+.++++|+||+|||||++.|.+......|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999998777677765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.53 E-value=0.00069 Score=72.96 Aligned_cols=47 Identities=28% Similarity=0.436 Sum_probs=36.3
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
.-++.|..+.|+|+|||||||++++|++..+|..=-|.| .|..++.+
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l 207 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVF 207 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCC
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhc
Confidence 335667779999999999999999999999887656666 33445443
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.52 E-value=0.0039 Score=58.70 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=24.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
+++.|+|++||||||+++.|.... .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 478899999999999999886543 35555543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.52 E-value=0.00048 Score=66.99 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+||
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999886532 1355665
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00039 Score=67.25 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
+++|+|++|||||||++.|...+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999876543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00068 Score=68.31 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEE
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~ 946 (1139)
+|++.+++|+||.|||||++.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999987766667664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00054 Score=66.21 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999866543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.34 E-value=0.00079 Score=65.40 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.|++++|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999875
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.34 E-value=0.007 Score=61.89 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.2
Q ss_pred cccceeEE--ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 274 ILKGFSLS--IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 274 ~l~~is~~--i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-|+.+ +. +++|+.+.|.|++|||||||+.-++-..
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35554 33 8899999999999999999998776553
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=66.39 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.|.++.|+||||||||||.+.|.-.++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.21 E-value=0.0046 Score=64.92 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=28.8
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
|-|+++.--+.|||.+.|.|++|+||||++.-+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35666655589999999999999999999877764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00045 Score=69.89 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 317 (1139)
+|+.++++|+||+|||||++.|.|...-..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998777777775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.20 E-value=0.0076 Score=60.00 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=16.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+..++++|||+|+||||.+-=|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999998876666555
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.16 E-value=0.0036 Score=58.95 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
+.|.|+|++||||||+++.|.+-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 468899999999999999876532 3555554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.14 E-value=0.0012 Score=64.27 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=24.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++|-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.09 E-value=0.0012 Score=64.33 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
++|-.|.|+|.+||||||+.++|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999997653
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.09 E-value=0.0015 Score=64.10 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
=+|||+|++|+|||||++.|++-
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37999999999999999999874
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0017 Score=65.02 Aligned_cols=50 Identities=32% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc--------------CCccEEEECCcccCCCChHHHhhhc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD--------------PNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~--------------p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|..+.|+||||||||||.+.|+.-++ |..|+ +||+|..-++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHh
Confidence 488999999999999999998876543 12344 478888777777776654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.014 Score=60.14 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..-+.+.||+|||||++++.|+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34578999999999999999998874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.00 E-value=0.0012 Score=63.63 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
.+++|+|++|||||||+.-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999998887653
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0002 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=30.0
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+++.++.+.+| +++|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467788888876 99999999999999999997544
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=62.85 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=24.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999865
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.012 Score=61.34 Aligned_cols=30 Identities=47% Similarity=0.539 Sum_probs=24.5
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
++.|+ .||+.+.|+|++|+||||++..|.-
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 55653 4699999999999999999976653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.90 E-value=0.0019 Score=62.41 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=24.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
|+|-.++|.||+||||||+.+.|+..+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999999776
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.012 Score=56.75 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.88 E-value=0.002 Score=62.25 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.87 E-value=0.0015 Score=62.96 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
.++|+|++|||||||+..|.+.+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 57999999999999999888877654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.00081 Score=67.97 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEE
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIIL 946 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~ 946 (1139)
+|.+..++|+||.|||||+++|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4888999999999999999999987776677775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0017 Score=63.36 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
..++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.024 Score=59.00 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=24.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
.++.++ .||+++.|.|++|+|||||+--|+-
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355553 4699999999999999999977654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.78 E-value=0.0018 Score=64.19 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|+|||++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.73 E-value=0.002 Score=63.68 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|||.|++|||||||++.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999999999987765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.035 Score=57.06 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=23.9
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+++...+.+.||+|+|||+++++|.+.+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34445689999999999999999998764
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.71 E-value=0.0022 Score=61.80 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=25.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
.++.|.||+||||||+++.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999998763 3444443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0025 Score=62.26 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhh
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
..+.|+|||||||+||++.|++-++ |..|+ +||+|.-=++.+..++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E--~~G~dY~Fvs~~~F~~ 62 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYFVSHDQMMQ 62 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEECCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCcc--ccCccceeeehhhhhh
Confidence 4689999999999999998885442 12343 4777755555565554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0022 Score=63.20 Aligned_cols=45 Identities=33% Similarity=0.628 Sum_probs=33.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhh
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|.|+|||||||+||++.|+.-++ |..|++ ||+|..-++.+...+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~ 61 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHH
Confidence 78999999999999999866542 234543 7877777777665543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.68 E-value=0.0024 Score=61.63 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
++|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999987653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.013 Score=60.76 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=24.4
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++..-+.+.||+|+|||+|++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455568899999999999999999987
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.61 E-value=0.0024 Score=63.08 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.57 E-value=0.0025 Score=62.25 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
+.+++|.|++||||||+++.|...+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3689999999999999999998776543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.56 E-value=0.0029 Score=61.12 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
...|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.54 E-value=0.0021 Score=62.65 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.49 E-value=0.021 Score=57.49 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=33.7
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
..+..++|+||.-.+=|++.-..+-.++-+.+ ...+++ ++++||..+..
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L-------~~~~~~-~i~tTH~~eL~ 160 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEAL-------HERRAY-TLFATHYFELT 160 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH-------HHHTCE-EEEECCCHHHH
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHH-------hhcCcc-eEEeeechhhh
Confidence 35566999999999999977666655544433 113445 89999976543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0029 Score=60.92 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998865
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.003 Score=60.05 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.40 E-value=0.0044 Score=60.65 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.+||+|++|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999975
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.40 E-value=0.0029 Score=60.94 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++|+||+||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998665
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0039 Score=60.79 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
..+.|+||||||||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0034 Score=59.83 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
|=+|+++|++|+|||||++.|.|-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0023 Score=63.18 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+|-++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998765
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.30 E-value=0.014 Score=64.54 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCE
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 462 (1139)
+|..+|=+||||+++.|.. |+++.....+ ....|..|+..-|--+...-.+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~---aa~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQ---ASLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHH---HHhcCCeEEEEeccCchHhhhhh
Confidence 4666777899999999975 6666655443 33458888888897665544444
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.28 E-value=0.0035 Score=61.18 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.28 E-value=0.026 Score=54.29 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
++-+.|-++|++||||||+++-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998754
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.25 E-value=0.0038 Score=66.89 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=30.6
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++.|.-+.|+|++||||||+++.|+++++|..=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4456679999999999999999999999886544555
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.25 E-value=0.003 Score=61.92 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|||+|++++|||||++.|+|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.23 E-value=0.0034 Score=60.40 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997765
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0037 Score=62.88 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887665
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.20 E-value=0.004 Score=59.78 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
.|.|+|++||||||+++.|.+-+. +...++|
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 589999999999999999998764 4455554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.18 E-value=0.0041 Score=60.61 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccE
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGI 944 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~ 944 (1139)
..|+|.|++||||||+++.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999998877654433
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.18 E-value=0.005 Score=60.56 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=24.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
|+|=.+.|+||.||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578889999999999999999999665
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.17 E-value=0.038 Score=56.05 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=27.1
Q ss_pred cccceeEE--EeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 903 VLNNFSLQ--IEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 903 vL~~vsl~--I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
-|+.+ +. +++|+.+-|.|++||||||++.-++.-
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35555 33 899999999999999999998766544
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.011 Score=60.83 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
+.+++++||+=. |.......+.+.+.....+..+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 456999999854 66677777777776555556689999988754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0044 Score=60.90 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHhccC
Q 048639 288 VALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++|+||||||||||++.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.13 E-value=0.0045 Score=59.72 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|+|+|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0025 Score=62.89 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+|-.|.|+|++||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999987653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.10 E-value=0.0045 Score=61.13 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+..+++|+||+||||||+.+.|+-.|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999766
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.0043 Score=61.37 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.0062 Score=64.42 Aligned_cols=43 Identities=16% Similarity=0.330 Sum_probs=32.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT 346 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 346 (1139)
++||.|++||||||+.+.|..++.-..+ ..++..+++|.+..+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECC
Confidence 7899999999999999999887742211 024677888877654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.98 E-value=0.0037 Score=60.98 Aligned_cols=21 Identities=57% Similarity=0.684 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 048639 917 VALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl 937 (1139)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.005 Score=58.38 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.|.|+|++||||||+.++|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.0035 Score=61.14 Aligned_cols=24 Identities=46% Similarity=0.523 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
=+|+|+|++++|||||++.|++-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.0052 Score=61.68 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.96 E-value=0.0031 Score=63.19 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=31.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCC--ccEEEECCcccC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPN--EGIILIDGKGIK 953 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~--~G~I~idG~di~ 953 (1139)
++|-.|-+.|.||||||||.+.|..-+... --.+.+||-+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 578899999999999999999987543211 135778886654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.93 E-value=0.0055 Score=59.53 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.91 E-value=0.0052 Score=63.78 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|+|+|++|+|||||++.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4999999999999999999985
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.0047 Score=61.16 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
+-.++.|+||+||||||+.+.|+.-| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 44579999999999999999999877 555554
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0058 Score=59.22 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|+|+|++|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999873
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.85 E-value=0.034 Score=57.53 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+++..-+-+.||+|+|||++++++.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 355566699999999999999999998773
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.83 E-value=0.0051 Score=59.75 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.-||+|||++|+|||||++.|.+=.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999997743
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.77 E-value=0.0057 Score=60.44 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=28.3
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
++++.++.|+||+||||||+.+.|+..| |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4678899999999999999999999876 445553
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.74 E-value=0.0072 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.671 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
|+|-++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.74 E-value=0.0058 Score=60.23 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++|+||||||||||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.073 Score=52.54 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.++++|||+|+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999887777776554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.70 E-value=0.0066 Score=57.34 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|+|++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.70 E-value=0.0066 Score=57.86 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||+|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999988653
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0073 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.0059 Score=64.57 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|||.|++||||||+.+.|..+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 489999999999999999988764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.00071 Score=67.47 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.1
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.+++.++++.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 356777777765 8999999999999999999644
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.0074 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||+++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999873
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.52 E-value=0.0046 Score=61.74 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|.+||++||||||+++.|.+.+.. -|.+..-++.+.+|+.+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~-------~~~~~~~~~~D~~r~~~ 45 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF-------IGVPTREFNVGQYRRDM 45 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-------cCCCCeEEcccceehhh
Confidence 5899999999999999999987652 13333344556666655
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.032 Score=57.07 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=32.4
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.+++++||+=. |..+....+.+.+++. ...+.+|++|++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~----------~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY----------SKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS----------TTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccc----------cccccceeeeccccch
Confidence 467999999954 7778888888888753 2344589999988644
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.48 E-value=0.0099 Score=60.65 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.47 E-value=0.0027 Score=60.51 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.44 E-value=0.009 Score=56.33 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.40 E-value=0.1 Score=51.46 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
..+++++||+|+||||.+--|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999998887777655
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.38 E-value=0.0089 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998776
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.36 E-value=0.0084 Score=57.75 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.+.++|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999998655
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.36 E-value=0.0096 Score=57.73 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.011 Score=58.95 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=25.2
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++|+++.|.||+|||||||+.-++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887644
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.33 E-value=0.0061 Score=59.56 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHhc
Q 048639 288 VALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~ 308 (1139)
|||+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.12 Score=52.07 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHH-HHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSA-LEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
..+..++|+||.-++=|++.-..+-.+ ++... .+.+..+++.||-.+.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~--------~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA--------NKIKALTLFATHYFEL 166 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH--------HTTCCEEEEECSCGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhh--------ccccceEEEecchHHH
Confidence 445569999999999998777666554 43332 1233337777776543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.29 E-value=0.0085 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.0095 Score=56.51 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
|=.++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 336899999999999999999975
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.0081 Score=59.11 Aligned_cols=43 Identities=40% Similarity=0.522 Sum_probs=29.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHh
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR 961 (1139)
|.|+|||||||+||++.|...++ |..|+ .||+|..-++.+.+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~ 58 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQ 58 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCC--ccCceeEEeehhHHH
Confidence 77999999999999999866432 22344 366665555555543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.20 E-value=0.011 Score=57.48 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998766
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.20 E-value=0.0096 Score=59.20 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.19 E-value=0.011 Score=56.21 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++|||++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999774
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.011 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++.|+||+||||||..+.|+-.|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998766
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.011 Score=57.02 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.11 E-value=0.011 Score=58.15 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
...|.|+||.||||||+.+.|..-| |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 3579999999999999999998766 445554
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.10 E-value=0.0087 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++.|.||+||||||+.+.|+--|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.019 Score=55.08 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----cccCCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLR-----FYDPNEG 943 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-----l~~p~~G 943 (1139)
||+++|.+|+|||||++.+.+ -|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 699999999999999987765 3456555
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.08 E-value=0.068 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+-.++++|||+|+||||.+-=|+-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999988766666544
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.012 Score=55.45 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++++|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999853
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.03 E-value=0.13 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-+-+.||.|+|||+++++|.+..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.02 E-value=0.012 Score=57.23 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.01 E-value=0.012 Score=64.97 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|||+|++|+|||||+++|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 499999999999999999998643
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.00 E-value=0.012 Score=57.29 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 048639 917 VALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl 937 (1139)
|||+|++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.012 Score=58.39 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999875
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.92 E-value=0.011 Score=58.74 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.90 E-value=0.0084 Score=58.27 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhc
Q 048639 288 VALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~ 308 (1139)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.89 E-value=0.0098 Score=57.59 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.-+++|||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999998754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.013 Score=56.12 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6688999999999999998766
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.79 E-value=0.016 Score=59.01 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.|+|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.78 E-value=0.017 Score=54.93 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++++|+.|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.013 Score=57.40 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.70 E-value=0.014 Score=55.61 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
.|.|+|++||||||+.++|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence 37899999999999999997766 444555
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.68 E-value=0.012 Score=57.42 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999998763
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.68 E-value=0.015 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||+|||+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6999999999999999998764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.66 E-value=0.014 Score=57.29 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
++||.|++||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.014 Score=57.43 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
-..|.|+||.||||||+++.|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3469999999999999999999877 445565
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.60 E-value=0.015 Score=58.33 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++|-||+||||||..+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999877
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.59 E-value=0.016 Score=60.14 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
.+.+.||+|||||||++.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 5889999999999999999998753 3455554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.46 E-value=0.015 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+.|-++|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999997655
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.02 Score=56.94 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-+++|+.+-|.||+||||||++.-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999999877764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.012 Score=62.84 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
.-+|||+|+.|||||||+..|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999877653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.016 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.42 E-value=0.02 Score=56.72 Aligned_cols=27 Identities=41% Similarity=0.847 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999988777776654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.013 Score=59.75 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++.+++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999998763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.027 Score=53.70 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc-----cccCCccE-----EEECCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLR-----FYDPNEGI-----ILIDGKG 951 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~r-----l~~p~~G~-----I~idG~d 951 (1139)
-||+|+|++|+|||||++.+.. -++|+-|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence 3799999999999999998763 23454433 4566654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.38 E-value=0.015 Score=57.15 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
=+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999866
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.37 E-value=0.018 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997766
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.34 E-value=0.017 Score=59.72 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.30 E-value=0.029 Score=53.80 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=27.0
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
.+++-.+.+ .|.-|.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 688899999999999999977654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.30 E-value=0.015 Score=60.18 Aligned_cols=175 Identities=19% Similarity=0.211 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc--cCCccEEEECCcccCCCChHHHhhhceEEccccc-cccccHHHHh--ccCCCcCC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY--DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL-LFSCSIRNNI--CYGNEAAS 990 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~-LF~gTIreNL--~~~~~~~s 990 (1139)
-|||+|+.|||||||+..|+..- ....|++. +|..+.+...++-.+++++-+.-.. .+.+ -+-|+ +||..+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccc-cceeEEccCchhhhh
Confidence 38999999999999999995432 12345553 6777788888888888776554322 2222 23454 35554444
Q ss_pred HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEe---eccccCCCHHHHHHHHHHH
Q 048639 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLL---DEATSALDAESERVIVSAL 1067 (1139)
Q Consensus 991 d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlL---DEaTS~LD~~te~~I~~~l 1067 (1139)
.|...++..+...=++-+-. .....+-++.+-.|+. .+.|.++++ |.+ + |.. + +.+.+
T Consensus 82 -~e~~~al~~~D~avlvvda~-----------~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~--~-~~~--~-~l~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADAALVAVSAE-----------AGVQVGTERAWTVAER-LGLPRMVVVTKLDKG--G-DYY--A-LLEDL 142 (267)
T ss_dssp -HHHHHHHHHCSEEEEEEETT-----------TCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC--C-CHH--H-HHHHH
T ss_pred -hhhhhhhcccCceEEEeecc-----------CCccchhHHHHHhhhh-ccccccccccccccc--c-cch--h-hhhhH
Confidence 35667777776433332211 1255666777777664 345666653 653 1 332 2 22334
Q ss_pred HhhCCCCCCccccCCCeEEEEEec----Cchhhhc--CCEEEEEeCCEEEEecChhHHhh
Q 048639 1068 EALNPKSSSCGELASRTTQITVAH----RLATVIN--SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1068 ~~~~~~~~~~~~~~~~tTvI~IaH----rl~ti~~--~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
++.+ +...-+.+=. ....+.+ ..+.+..++|.-.+..-|.++.+
T Consensus 143 ~~~l----------g~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~ 192 (267)
T d2dy1a2 143 RSTL----------GPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE 192 (267)
T ss_dssp HHHH----------CSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred HHHh----------ccCcCeEeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHHH
Confidence 4333 1121122211 1122222 45677778888777666666543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.27 E-value=0.02 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.|+||+||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.25 E-value=0.02 Score=57.01 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=29.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCC--ccEEEECCcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPS--NGDILIDSLN 322 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~--~G~i~~~g~~ 322 (1139)
++|.++-+.|.||||||||.+.|...+... --.+.+||-+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 578899999999999999999997544221 2346677643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.022 Score=54.73 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.22 E-value=0.019 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.21 E-value=0.016 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998776
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.034 Score=53.15 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.02 Score=57.31 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++|.||+||||||+.+.|+.-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999997763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.13 E-value=0.035 Score=53.01 Aligned_cols=28 Identities=36% Similarity=0.663 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----cccCCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLR-----FYDPNEG 943 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-----l~~p~~G 943 (1139)
||.++|.+|+|||||++.+.. -|+|+.|
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccc
Confidence 799999999999999998753 3455544
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.011 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++|+|++++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.11 E-value=0.0078 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.10 E-value=0.021 Score=56.79 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
.|||+|..||||||+++.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998843
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.09 E-value=0.02 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
++.=||.|||+.|||||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3345799999999999999998876
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.08 E-value=0.02 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-.|+|-|..||||||+++.|.+-+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998866
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.07 E-value=0.017 Score=56.89 Aligned_cols=117 Identities=14% Similarity=0.215 Sum_probs=65.0
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCC
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAAS 990 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~s 990 (1139)
++.+..|.|+||.||||||+.+.|..-| |-..|+--+ -+|..+ ...+. ....+.+.+.-+ ...+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~~-~~~~~~~~~~~~-~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGSA-RGKMLSEIMEKG-QLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTCH-HHHHHHHHHTTT-CCCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccH-------HHHHHH---HHhHh-hhhhhHHHHhhc-cCCc
Confidence 4567889999999999999999998866 445554211 233321 11111 122344444444 2456
Q ss_pred HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 048639 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051 (1139)
Q Consensus 991 d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEa 1051 (1139)
++-+.+.++.. +...+...+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred hheeeeehhhh-----hhhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 66565554432 11222212212221 2455667777888877766666667654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.017 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.++|++||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998766
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.022 Score=55.89 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=40.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
+|.|+||.||||||..+.|..-| |-..|+- -+-+|..+ -++...+.-.+.+.+.-+. ...|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcH-------HHHHHHHH---HhhhhhHHHHHHHHHhcCC-ccccchhh
Confidence 58999999999999999998765 4344432 12244422 1222333334555554442 45666665
Q ss_pred HHHHH
Q 048639 996 EVSKK 1000 (1139)
Q Consensus 996 ~al~~ 1000 (1139)
..++.
T Consensus 68 ~~~~~ 72 (194)
T d1teva_ 68 SLLKR 72 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.98 E-value=0.022 Score=56.61 Aligned_cols=20 Identities=40% Similarity=0.733 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 048639 287 MVALVGSSGCGKSTVISLVA 306 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~ 306 (1139)
++||.|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.024 Score=56.42 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987553
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.024 Score=56.44 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++|-+++|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.85 E-value=0.025 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++|+||.||||||+.+.|+--|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.82 E-value=0.022 Score=55.17 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHhc
Q 048639 288 VALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+||+|+..+|||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.02 Score=58.23 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.81 E-value=0.023 Score=54.31 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 599999999999999998764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.76 E-value=0.035 Score=54.82 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i 947 (1139)
++..+++|||+|+||||.+.=|...+.-..-+|.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~l 39 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 39 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 46789999999999999987777766533334444
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.026 Score=54.62 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
.+.|+||.||||||+.+.|+-.+ |-..++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 46789999999999999999776 445553
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.75 E-value=0.024 Score=56.83 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+|+|-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.68 E-value=0.021 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999988775
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.68 E-value=0.019 Score=61.30 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.-.+||+||.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999999987764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.65 E-value=0.025 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|+||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998766
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.65 E-value=0.034 Score=52.12 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=27.1
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
..++|.++++.|+-|||||||.+.++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999999987643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.044 Score=52.34 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh-----ccCCCccEE
Q 048639 287 MVALVGSSGCGKSTVISLVAR-----FYDPSNGDI 316 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g-----~~~~~~G~i 316 (1139)
+++|+|.+|+|||||++-+.+ .+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 599999999999999997654 234555543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.036 Score=52.59 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987664
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.041 Score=52.50 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.026 Score=54.24 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.56 E-value=0.027 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHhc
Q 048639 286 KMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
=+++|+|.+|||||||++.|.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.036 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.025 Score=58.83 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|||.|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.029 Score=56.95 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.7
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+++.|.||+|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999999987653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.45 E-value=0.03 Score=61.70 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
.++-.|.|.|||||||||.+.++++..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35667999999999999999999987643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.43 E-value=0.028 Score=54.00 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||++||+.|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998855
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.39 E-value=0.018 Score=59.86 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|||.|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999887664
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.39 E-value=0.03 Score=56.86 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
.+.+.||+|+||||++++|+..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 3789999999999999999998865533
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.35 E-value=0.029 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987663
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.032 Score=55.22 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.|+|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.30 E-value=0.03 Score=55.51 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
.|+|+|+.|+|||||++.|.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999976
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.29 Score=49.21 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=32.5
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh
Q 048639 1043 PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
.+|+|+||+=. |+.+....+.+.|++. .+.+.+|++|++.+-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~----------~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSC----------CTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcC----------CCCeEEEEEcCCccccC
Confidence 46999999954 7777777777777642 34456999999887764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.29 E-value=0.033 Score=53.21 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.35 Score=47.41 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
..+-+.||.|+||||++..+.+.+-
T Consensus 25 h~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 25 HALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcc
Confidence 3589999999999999999998764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.031 Score=55.88 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.035 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
+|.+++|-|+-||||||++++|.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999876653
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.15 E-value=0.048 Score=52.15 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=24.5
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
.|++--+.+ .|.=|.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344444433 478899999999999999877653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.99 E-value=0.04 Score=56.37 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.+.+.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.96 E-value=0.036 Score=61.01 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
.+||+|++|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996543333
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.96 E-value=0.034 Score=53.92 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||++||.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.033 Score=52.95 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.86 E-value=0.04 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999997765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.86 E-value=0.031 Score=59.35 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=25.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
.-+.++||+|||||+|++.|+..+.. --+.+++
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 45568999999999999999998632 2445544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.036 Score=53.25 Aligned_cols=21 Identities=52% Similarity=0.819 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||++||+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999997754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.039 Score=54.83 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
++|-.|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999977654
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.059 Score=51.42 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|||.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999997653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.80 E-value=0.038 Score=53.39 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998766
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.77 E-value=0.038 Score=52.45 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.++|++|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999997753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.70 E-value=0.053 Score=51.27 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.042 Score=52.72 Aligned_cols=21 Identities=48% Similarity=0.755 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.67 E-value=0.04 Score=54.50 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|||+|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.04 Score=54.69 Aligned_cols=21 Identities=52% Similarity=0.686 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
++||+|+.||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998863
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.64 E-value=0.057 Score=51.33 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=24.1
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 904 L~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
+++--+ .-.|.=|.|+|+||+||||++..|.+
T Consensus 6 ~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLV-DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEE-EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444333 44588899999999999999876654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.04 Score=52.43 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||.+|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999988864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.60 E-value=0.023 Score=58.99 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=0.041 Score=54.67 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
.|||+|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.59 E-value=0.038 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
..+++|||+|+||||.+.=|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5699999999999998877776665
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.051 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.043 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+|+|++|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 499999999999999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.072 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.52 E-value=0.044 Score=55.86 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=24.1
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+++.|.||+|||||||..-++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999988874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.045 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
||+++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999887653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.44 E-value=0.043 Score=55.96 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.8
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHH
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVA 306 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~ 306 (1139)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999987554
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.041 Score=52.25 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.39 E-value=0.038 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.39 E-value=0.06 Score=51.45 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=26.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
.++..-+.+ .|.-+.|.|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456556666 788899999999999999977653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.39 E-value=0.049 Score=54.76 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.4
Q ss_pred cccceeE-EecCCCEEEEECCCCCcHHHHHHHHH
Q 048639 274 ILKGFSL-SIPAGKMVALVGSSGCGKSTVISLVA 306 (1139)
Q Consensus 274 ~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~l~ 306 (1139)
-|+++-- =+++|+++.|.|++|+|||||+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3444332 38899999999999999999985443
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.043 Score=52.54 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999998763
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.27 E-value=0.05 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.27 E-value=0.039 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.072 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+++|.+|+|||||++.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999997655
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.085 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999987764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.066 Score=50.82 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.24 E-value=0.039 Score=55.98 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHhccC
Q 048639 288 VALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.051 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.17 E-value=0.048 Score=55.26 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=25.0
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++|+++.|.|++|+|||||+.-++--.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999988887543
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.15 E-value=0.09 Score=49.79 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.13 E-value=0.066 Score=51.15 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
||.++|.+|+|||||++.+.+-.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999887654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.046 Score=52.18 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|+|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.056 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999998754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.02 E-value=0.051 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
=+|.|+|+.||||||+.+.|..-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998866
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.054 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.437 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|++|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999998875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.01 E-value=0.085 Score=50.11 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.99 E-value=0.094 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.069 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.97 E-value=0.05 Score=52.10 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999987754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.96 E-value=0.039 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-..+++|||+|+||||.+.=|...+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999866555444
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.92 E-value=0.041 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-=||.++|++|+|||||++.+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998743
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.91 E-value=0.051 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.86 E-value=0.05 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.062 Score=54.29 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~ 935 (1139)
-+++|+.+-|.|++||||||++.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.051 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.++|..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.08 Score=50.55 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 588999999999999999987543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.81 E-value=0.056 Score=54.43 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.76 E-value=0.066 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.054 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|||.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987653
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.71 E-value=0.044 Score=54.23 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
....+++|||+|+||||.+.=|...+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345699999999999998776666554
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.67 E-value=0.048 Score=57.74 Aligned_cols=37 Identities=19% Similarity=0.481 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
+.-+.++||||+|||+|+++|++.... --+.+|+-++
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHhhcccc--chhccccccc
Confidence 345789999999999999999998642 2455665443
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.62 E-value=0.078 Score=54.39 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=24.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
..+.|.||+|+||||+++.++..+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 5789999999999999999999886443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.61 E-value=0.057 Score=51.29 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.60 E-value=0.06 Score=55.82 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877544
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.1 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++++|++|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977663
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.54 E-value=0.06 Score=51.91 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
+|.|+||.||||||+.+.|.--| |-..|+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 57899999999999999998766 445554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.047 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+++|.+|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999987643
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.53 E-value=0.064 Score=53.15 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+|..|+|-|+-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.52 E-value=0.066 Score=50.62 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.51 E-value=0.049 Score=54.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.059 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|||.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999988764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.50 E-value=0.071 Score=59.20 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP 971 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp 971 (1139)
-|.++||||||||-|++.|+++.+.. -+.+|+....+ .|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe---------aGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE---------VGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee---------cceeecch
Confidence 48999999999999999999988643 56677665554 56666665
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.50 E-value=0.061 Score=55.36 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.076 Score=50.59 Aligned_cols=21 Identities=24% Similarity=0.629 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998876
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.37 E-value=0.052 Score=55.94 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
-+.++||+|||||||+++|.+.+. .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 488999999999999999999764 33455655
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.057 Score=55.84 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.8
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.=+.|-+|++.+|+|++|+|||||+..|..-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 336889999999999999999999999987543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.053 Score=56.08 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=27.8
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+.|-+|++++|+|++|+|||||+..+.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999988543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.062 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.|||..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.062 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhc
Q 048639 915 LKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-||.|+|.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999987764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.17 E-value=0.089 Score=49.79 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++|+|++|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999887753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.14 E-value=0.064 Score=55.19 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=33.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC--CCccEEEECCccCCCCCHHHHhcceE
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD--PSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
-++|+|+.|||||||+..|+..-. ...|++. +|....+..+++..++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~t 54 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTT 54 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCe
Confidence 379999999999999999954321 2345443 455566667766666554
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.08 E-value=0.047 Score=52.30 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.++|..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.068 Score=50.70 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 048639 916 KVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~ 935 (1139)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999775
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.06 E-value=0.071 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.04 E-value=0.11 Score=49.36 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.065 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999998763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.07 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
+++|+|++|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887753
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.94 E-value=0.087 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.91 E-value=0.076 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+|..|+|-|.-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987665
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.89 E-value=0.12 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.795 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.88 E-value=0.071 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||++||..|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999996653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.88 E-value=0.088 Score=52.64 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHH-HhccCCCcc
Q 048639 287 MVALVGSSGCGKSTVISLV-ARFYDPSNG 314 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l-~g~~~~~~G 314 (1139)
++.++|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 566778877
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.85 E-value=0.078 Score=51.18 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.83 E-value=0.063 Score=54.72 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+.+.||+|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999865
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.74 E-value=0.083 Score=49.42 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=27.4
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
..+||..|.+.|+=||||||+.+.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999987743
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.74 E-value=0.074 Score=54.65 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=32.8
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccE-EEECCcc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD-ILIDSLN 322 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~~~g~~ 322 (1139)
=+++|.++-|.||+|||||||+-.++....-..|. +++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 57899999999999999999988877766544444 6666653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.079 Score=50.40 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 048639 916 KVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~ 935 (1139)
||.+||..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999999887
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.65 E-value=0.087 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+.+.||+|||||++++.|++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999875
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.65 E-value=0.076 Score=50.93 Aligned_cols=21 Identities=43% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.+||..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.078 Score=50.43 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+|||+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997644
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.52 E-value=0.08 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998765
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.52 E-value=0.093 Score=52.54 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=24.5
Q ss_pred cccceeE-EEeCCcEEEEEcCCCCCHHHHHHH
Q 048639 903 VLNNFSL-QIEPGLKVALVGPSGAGKSSVLAL 933 (1139)
Q Consensus 903 vL~~vsl-~I~~Ge~vaIvG~sGSGKSTL~~l 933 (1139)
-|+++-- -+++|+.+-|.|++|+||||++.-
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 3444322 389999999999999999999854
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.52 E-value=0.062 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
=+|||||-.-+|||||+++|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 48999999999999999999954
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.45 E-value=0.12 Score=49.16 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.1
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
.++..-+. -.|.=+.|.|+||+||||+.-.|..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34443343 3577899999999999999877663
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.43 E-value=0.073 Score=56.50 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.-.++|.||.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999998654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.085 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-|++|+.+-|.|++||||||+..-++-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.39 E-value=0.11 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998876
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.38 E-value=0.11 Score=49.25 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|+.|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997664
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.082 Score=50.47 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.33 E-value=0.093 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.26 E-value=0.093 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALL 934 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL 934 (1139)
-+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 4899999999999999999998744
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.25 E-value=0.054 Score=52.23 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999998754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.24 E-value=0.077 Score=52.32 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
...+.+|||+|+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999998887776654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.12 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998874
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.12 E-value=0.062 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.11 E-value=0.097 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=23.3
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHh
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~ 935 (1139)
+++|+.+-|.|++|+||||++.-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999987765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.07 E-value=0.14 Score=49.22 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999986644
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.07 E-value=0.088 Score=51.35 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
||+|+|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 499999999999999997763
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.05 E-value=0.085 Score=54.43 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc---cccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHh--ccCCCcCC
Q 048639 916 KVALVGPSGAGKSSVLALLLR---FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI--CYGNEAAS 990 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r---l~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL--~~~~~~~s 990 (1139)
-|||+|..|||||||+..|+- ..+ .-|++. +|..+.+...++..+++++-+.-..+--..-+-|| +||..+..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence 489999999999999999853 222 235553 55556666666666666663332211111122344 25554554
Q ss_pred HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE---eeccccCCCHHHHHHHHHHH
Q 048639 991 EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML---LDEATSALDAESERVIVSAL 1067 (1139)
Q Consensus 991 d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILl---LDEaTS~LD~~te~~I~~~l 1067 (1139)
.+...++..+...=++-+-.+| .-.+-++..-.|+. .+-|.|++ ||-+=+.. ..+.+.|
T Consensus 86 -~e~~~~l~~~D~avlVvda~~G-----------v~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~ei 147 (276)
T d2bv3a2 86 -IEVERSMRVLDGAIVVFDSSQG-----------VEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRTM 147 (276)
T ss_dssp -TTHHHHHHHCCEEEEEEETTTS-----------SCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHHH
T ss_pred -HHHHHHHHhhhheEEeccccCC-----------cchhHHHHHHHHHH-cCCCEEEEEeccccccccc-----chhHHHH
Confidence 3566777776654333222222 33455555666653 35677776 35443322 2455566
Q ss_pred HhhC
Q 048639 1068 EALN 1071 (1139)
Q Consensus 1068 ~~~~ 1071 (1139)
++.+
T Consensus 148 ~~~l 151 (276)
T d2bv3a2 148 QERL 151 (276)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6544
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.00 E-value=0.089 Score=54.02 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+..+.|.||.|+|||||++.+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999877644
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.95 E-value=0.11 Score=50.58 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHh
Q 048639 288 VALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g 307 (1139)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999998775
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.93 E-value=0.14 Score=52.39 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEG 943 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G 943 (1139)
..+.|.||+|+||||+++.+.+.+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999999998864433
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.92 E-value=0.087 Score=55.30 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999964
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.84 E-value=0.1 Score=53.62 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=38.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhceE
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
-|++|..+-|.|++|||||||+..+..-..-..| -++||... .++.+.+ +++|+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~a-~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIYA-RKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHHH-HHhCC
Confidence 6889999999999999999998877776643344 47778765 3344332 34454
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=0.063 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.71 E-value=0.083 Score=52.86 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
+.+++++||.-. +....+..+...+.........++++++.+-+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999654 34445555666666555566778888877654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.1 Score=49.44 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 048639 916 KVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~ 935 (1139)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.61 E-value=0.14 Score=49.87 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHH--hccCCCcc
Q 048639 287 MVALVGSSGCGKSTVISLVA--RFYDPSNG 314 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~--g~~~~~~G 314 (1139)
++.++|.+|+|||||++-+. -.+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999999883 23457777
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.56 E-value=0.11 Score=50.16 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=25.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
++.++|..|+|||||++-+.....|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 589999999999999999887777877743
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.53 E-value=0.084 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||.++|+.|+|||||++.+..-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988643
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.49 E-value=0.11 Score=49.23 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997644
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.48 E-value=0.1 Score=52.80 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
.|||+|.-||||||+++.|..-+ |-..+|
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC----CCeEEc
Confidence 69999999999999999995422 445554
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.44 E-value=0.1 Score=50.39 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 048639 916 KVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~ 935 (1139)
||.|+|.+|+|||||++.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999998765
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.42 E-value=0.098 Score=55.53 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+|||||..-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999885
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.33 E-value=0.1 Score=55.07 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++++||..+||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.30 E-value=0.1 Score=57.92 Aligned_cols=45 Identities=20% Similarity=0.444 Sum_probs=32.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP 342 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 342 (1139)
-+.++||+|||||-|++.|++++.. =-+..|...+. ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceee---------ecceeecch
Confidence 4779999999999999999998753 25666665543 478888876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.27 E-value=0.11 Score=52.43 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
.+-+.||+|+||||++++|..-+.... +.++|.+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~~ 71 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPVL 71 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTTC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc--ccccCccc
Confidence 378999999999999999999876543 33455443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.12 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.20 E-value=0.068 Score=51.07 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987544
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.14 E-value=0.099 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+-|.||+|+||||+++++.+-+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999999865
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=0.11 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-.|+|+|+.++|||||++.|++-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.13 E-value=0.13 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.+.||+|||||++++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999975
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.07 E-value=0.13 Score=52.67 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.2
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
=+.+-+|++.+|.|++|+|||||+.-++.-.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999999988887653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.94 E-value=0.16 Score=48.01 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.3
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
.-.|.=+.|.|+||+||||+.-.|..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34588899999999999999866653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.90 E-value=0.16 Score=48.93 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
||.++|..|+|||||++-+....-|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 789999999999999998877666777743
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.87 E-value=0.1 Score=54.66 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc------------cCCccEEEEC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY------------DPNEGIILID 948 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~------------~p~~G~I~id 948 (1139)
+=++||||...+|||||+++|.+-- +|.-|.+.+.
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecc
Confidence 3479999999999999999999752 4456776654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.82 E-value=0.12 Score=50.71 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.|+|-|.-||||||+++.|..-++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.82 E-value=0.1 Score=52.25 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
+.+++++||.= .+.......+...+....+...+++++++...+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34699999974 466667777788887665555667777766544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.80 E-value=0.13 Score=50.25 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 048639 917 VALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
|||+|.-.+|||||++.|.+..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999998754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.78 E-value=0.12 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+-+.||+|+||||++++|++-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998764
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.77 E-value=0.12 Score=55.77 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=30.0
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE-ECCcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL-IDSLN 322 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-~~g~~ 322 (1139)
++++..+.+.||+|+||||+.+.|++++. |.+. +++-+
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~ 189 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL 189 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcc
Confidence 36777999999999999999999999974 4443 44433
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.65 E-value=0.13 Score=49.74 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987664
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.62 E-value=0.18 Score=51.67 Aligned_cols=75 Identities=15% Similarity=0.353 Sum_probs=50.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE-EEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA 988 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~ 988 (1139)
-++.|..+-|.|++||||||++..+........|. |+||... .++.+.+++ +|+ |+ +|+.+..|
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv---D~--------d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV---DT--------DSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC---CG--------GGCEEECC-
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCC---CH--------HHeEEecC-
Confidence 68899999999999999999987777766555565 6778765 345555544 454 21 45555544
Q ss_pred CCHHHHHHHHH
Q 048639 989 ASEAEIVEVSK 999 (1139)
Q Consensus 989 ~sd~ei~~al~ 999 (1139)
.+-|++.+.++
T Consensus 121 ~~~E~~~~~~~ 131 (269)
T d1mo6a1 121 DTGEQALEIAD 131 (269)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34556655544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.60 E-value=0.13 Score=52.83 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=36.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccE-EEECCccCCCCCHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD-ILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~ 331 (1139)
=++.|.++-+.||+|||||||+-.++.......|. |+||... .++++.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a 105 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA 105 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH
Confidence 57899999999999999999987777766655665 5566654 2344443
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.50 E-value=0.11 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 048639 917 VALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.49 E-value=0.13 Score=51.93 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
.++||.|+-||||||..+.|...+ |-..++
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC----CCeEEc
Confidence 378999999999999999996543 444444
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=0.13 Score=50.02 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 048639 916 KVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~ 935 (1139)
||.++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999997664
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.14 E-value=0.14 Score=49.76 Aligned_cols=27 Identities=41% Similarity=0.759 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc---ccCCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF---YDPNEG 943 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl---~~p~~G 943 (1139)
||.|+|.+|+|||||++-+ ++ +.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 7999999999999999987 44 347777
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.00 E-value=0.14 Score=50.32 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
-++|+|+.++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999754
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.95 E-value=0.55 Score=45.60 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHH
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEA 992 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ 992 (1139)
.+..+-+.||+|+||+|++..|.+...-. +-. .|-++. +.+......-+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~---------~~~----------------h~D~~~------i~~~~~~I~Id 62 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKF---------PPK----------------ASDVLE------IDPEGENIGID 62 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTS---------CCC----------------TTTEEE------ECCSSSCBCHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcc---------ccC----------------CCCEEE------EeCCcCCCCHH
Confidence 35678999999999999999998865211 000 111110 01101123456
Q ss_pred HHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCC
Q 048639 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNP 1072 (1139)
Q Consensus 993 ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~ 1072 (1139)
++++..+.+... | .. .+.||+|+|||= .|..++...+.++|++-
T Consensus 63 ~IR~i~~~~~~~------~-------------~~--------------~~~KviIId~ad-~l~~~aqNaLLK~LEEP-- 106 (198)
T d2gnoa2 63 DIRTIKDFLNYS------P-------------EL--------------YTRKYVIVHDCE-RMTQQAANAFLKALEEP-- 106 (198)
T ss_dssp HHHHHHHHHTSC------C-------------SS--------------SSSEEEEETTGG-GBCHHHHHHTHHHHHSC--
T ss_pred HHHHHHHHHhhC------c-------------cc--------------CCCEEEEEeCcc-ccchhhhhHHHHHHhCC--
Confidence 777655544331 1 11 135999999974 57888888999999853
Q ss_pred CCCCccccCCCeEEEEEecCchhhh
Q 048639 1073 KSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1073 ~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
.+.|..|.+|++.+.+.
T Consensus 107 --------p~~t~fiLit~~~~~ll 123 (198)
T d2gnoa2 107 --------PEYAVIVLNTRRWHYLL 123 (198)
T ss_dssp --------CTTEEEEEEESCGGGSC
T ss_pred --------CCCceeeeccCChhhCH
Confidence 35577999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.81 E-value=0.13 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+|+|+||-++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999853
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.15 Score=49.41 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++++|++|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999977654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.42 E-value=0.15 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+++||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.39 E-value=0.15 Score=52.38 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=32.8
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccE-EEECCc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGD-ILIDSL 321 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~-i~~~g~ 321 (1139)
=++.|.++-|-||+|||||||+..++....-..|. +++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 47899999999999999999999888876644453 556654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.35 E-value=0.15 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.32 E-value=0.088 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
|.-+.|+||.|+|||||++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 446899999999999999999999976
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.30 E-value=0.18 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
-+||+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.28 E-value=0.15 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+-+.||+|+||||+++++.+-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.20 E-value=0.19 Score=51.37 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+.+-+|||++|.|.+|+|||||+.-+.+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 57889999999999999999998877654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.00 E-value=0.15 Score=51.71 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
..|.+.||+|+|||+++++|.+-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 358999999999999999998743
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.17 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
++++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997664
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.01 E-value=0.13 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+.+.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999999876
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.96 E-value=0.48 Score=46.03 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
+.+|+++||+= .|...++..+.+.|.+-.++...|++|++++.+
T Consensus 79 ~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 46899999964 356677778888887655677889999997754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.95 E-value=0.17 Score=53.09 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
...++| .+.++||+|+|||.|.+.|++...-...-+.++|
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 445555 5666899999999999999998632222344544
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.85 E-value=0.12 Score=46.79 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred EeCCcEEEEEcCCCCCHHHHH-HHHhccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVL-ALLLRFY 938 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~-~lL~rl~ 938 (1139)
+++|+.+-|++|||||||..+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 367999999999999999655 3433333
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.57 E-value=0.22 Score=49.49 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHh-ccccCCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLL-RFYDPNEG 943 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~-rl~~p~~G 943 (1139)
-||.++|.+|+|||||++-+. +-+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 479999999999999998763 33456666
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.47 E-value=0.14 Score=52.59 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=31.7
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI 947 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i 947 (1139)
+++.+ +.|-+|+|++|+|++|+|||+|+..+..-..-....+.+
T Consensus 57 ~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 57 AIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred EEecc-ccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 55433 588899999999999999999997655544433434333
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.28 E-value=0.27 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
.+.++||||+|||.|++.|.+.+. .--|.+|.-
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s 86 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMS 86 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGG
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEeccc
Confidence 478999999999999999999874 235555543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.08 E-value=0.22 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+||||.+-||||||+++|++--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999853
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.00 E-value=0.22 Score=52.52 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=25.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
.+.++||+|+|||.|++.|+..+. .--|.+|.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~ 85 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDM 85 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEG
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEecc
Confidence 578999999999999999999864 22455543
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.92 E-value=0.22 Score=49.50 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+-+.||+|+||||+++++.+-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67999999999999999987643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.72 E-value=0.23 Score=51.01 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHH---hccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 287 MVALVGSSGCGKSTVISLVA---RFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
-+||+|+.|||||||+..|+ |..+. .|++. +|..+.+..+++..+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~ 57 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGI 57 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCC
Confidence 47999999999999999985 33332 34442 33334444444444444
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=83.58 E-value=0.23 Score=54.85 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCHHHHHH-HHhccccCCccEEEECC
Q 048639 915 LKVALVGPSGAGKSSVLA-LLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~-lL~rl~~p~~G~I~idG 949 (1139)
.-+.|+|+||||||++++ ++..++....+-|.+|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 358999999999999986 45455544445555553
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.55 E-value=0.23 Score=49.40 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.+++++||+= .+.......+.+.|++.. ..+.++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~----------~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYT----------KNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT----------TTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcc----------cceeeccccCcHHHh
Confidence 34799999985 577777788888887642 345477777766654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=83.45 E-value=0.24 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.+||||.+-+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999986
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=83.05 E-value=0.46 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++||||-.-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999964
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.94 E-value=0.26 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.-+-+.||+|+|||++++++.+...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceeEEecCCCCCchHHHHHHHHHhC
Confidence 3489999999999999999999653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.50 E-value=0.31 Score=47.42 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhcc
Q 048639 287 MVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+||+|..++|||||++.|++..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 37999999999999999998754
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=82.47 E-value=0.45 Score=50.21 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
.+.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57888999999999999999987655443333
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.30 E-value=0.29 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
..|+|-|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4689999999999999999987664
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.74 E-value=0.33 Score=47.92 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.9
Q ss_pred ccCCCEEEEeCCCCCC-CHHhHHHHHHHHHHHc-CCCeEEEEecC
Q 048639 411 VKNPPILLLDEATSAL-DSESEKLVQEALERAM-QGRTVILIAHR 453 (1139)
Q Consensus 411 ~~~~~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~ 453 (1139)
+.+.+++++||-=.-. +...+..+...+.... .++.+|+.+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 5688999999985433 4567778888887754 56777766654
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.38 E-value=0.18 Score=45.41 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=20.9
Q ss_pred ecCCCEEEEECCCCCcHHHHH-HHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVI-SLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll-~~l~g~~ 309 (1139)
+++|+.+.|.+|+|||||+.+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 468999999999999999554 3444433
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.32 E-value=0.32 Score=44.00 Aligned_cols=34 Identities=24% Similarity=0.121 Sum_probs=25.9
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhh
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
.+-.+++-+++|+||+= .+|..+...+...++..
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred cchhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 34456788999999994 57998888887777644
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.22 E-value=0.68 Score=47.17 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=38.7
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP 342 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 342 (1139)
.++-.++.+.||.++||||++++|..++ +.-|.+ ++. -+......+..+--.+.+||
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~ 157 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEG 157 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSC
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCC
Confidence 3566689999999999999999999998 555533 221 13344555555544455665
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.90 E-value=0.35 Score=49.49 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=28.4
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
.=+.+-+|++.+|+|++|+|||+|+..+..-..-+.
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~ 95 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN 95 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHhhhcccC
Confidence 336889999999999999999999987654443333
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.76 E-value=0.33 Score=52.06 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=31.9
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE-EECCccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-LIDGKGI 952 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I-~idG~di 952 (1139)
.++++..+.++||.|+||||++++|+++.. |.+ .+++-+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence 446778999999999999999999999975 444 3565544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.67 E-value=0.32 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999999875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.42 E-value=0.39 Score=46.22 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++.++|..|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999988553
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.32 E-value=0.44 Score=41.83 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=30.2
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHH-hccccCCcc-EEE-ECCcccC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALL-LRFYDPNEG-IIL-IDGKGIK 953 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL-~rl~~p~~G-~I~-idG~di~ 953 (1139)
+.|=.|-+.|-+|||||||.++| ..|.+-..| .|. +||.+++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ 48 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT 48 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH
Confidence 35778899999999999999888 666664433 354 4665443
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.29 E-value=0.38 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
||.++|.+|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999987544
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.18 E-value=0.35 Score=51.88 Aligned_cols=33 Identities=30% Similarity=0.568 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 048639 917 VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 951 (1139)
+-.+||||+|||-|++.|+++.+ ..-|.+|-..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~ 103 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDATS 103 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGG
T ss_pred eeeeCCCCccHHHHHHHHHhhcc--cceeehhhhh
Confidence 77899999999999999999864 2355565433
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.17 E-value=0.42 Score=48.80 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=39.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhceE
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
-|+.|..+-|.|++||||||+...+..-..-..| -++||... .++++. -+++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~-a~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVY-ARALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHH-HHHhCC
Confidence 5789999999999999999999888877654344 46777664 445543 345665
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