Citrus Sinensis ID: 048642
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.897 | 0.927 | 0.463 | 1e-179 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.957 | 0.966 | 0.395 | 1e-152 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.879 | 0.941 | 0.407 | 1e-147 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.892 | 0.931 | 0.407 | 1e-145 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.666 | 0.646 | 0.272 | 2e-32 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.588 | 0.241 | 0.245 | 9e-17 | |
| P15926 | 1167 | C5a peptidase OS=Streptoc | yes | no | 0.470 | 0.315 | 0.273 | 3e-16 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.588 | 0.241 | 0.241 | 6e-16 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.470 | 0.310 | 0.271 | 6e-16 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | yes | no | 0.465 | 0.311 | 0.271 | 1e-15 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust.
Identities = 336/725 (46%), Positives = 458/725 (63%), Gaps = 23/725 (3%)
Query: 56 DSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKK 115
D H + S L S + + + Y+Y+N I+GF+ L +EEA + P V+S+ P +
Sbjct: 46 DLHSNWYDSSLRSISDSAE-LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYE 104
Query: 116 LHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSR 175
LHTTR+ F+ L+ H++ + + D+++ LDTGVWPESKS+SDEG+GP+PS
Sbjct: 105 LHTTRTPLFLGLDE----HTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSS 160
Query: 176 WKGTCQNSTK-EGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLST 234
WKG C+ T CNRKLIGAR+F R Y + + + S + + RD +GHGTHT ST
Sbjct: 161 WKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKE-SRSPRDDDGHGTHTSST 219
Query: 235 AGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294
A G++V G ++ G +GTA+G +P+ARVA YKVCW G CF +DIL D AI D V
Sbjct: 220 AAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWL----GGCFSSDILAAIDKAIADNV 275
Query: 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGAS 354
+V+S+SLGG +DY+ DG AIGAF A++ GI+V CSA N+GP +++NV+PWI TVGA
Sbjct: 276 NVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAG 335
Query: 355 TLDREFQNFVELRNGQRFKGTSLSK--SLPNDTFYPLITGLQAKAANADDTAASLCKNGA 412
TLDR+F L NG+ F G SL K +LP D P I A+NA T +LC G
Sbjct: 336 TLDRDFPALAILGNGKNFTGVSLFKGEALP-DKLLPFI--YAGNASNA--TNGNLCMTGT 390
Query: 413 LDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQIT 472
L EKVKGKI++C RG ARV KG AG VGMIL N ++G E+ AD H LPA+ +
Sbjct: 391 LIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVG 450
Query: 473 YKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPG 532
K G + Y+ + NP I+ T + KPSP +A+FSS GPN ITP ILKPD+ APG
Sbjct: 451 EKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPG 510
Query: 533 VNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VNI+AA+TGA G T L D+RR+ +NI+SGTSMSCPHV+G+ LLK+ HP+WSP+AIRSA
Sbjct: 511 VNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSA 570
Query: 593 IMTTARTRDNTANPMRD-GSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSI 651
+MTTA P+ D + K +TPF +G+GH+ P A +PGL+YDL+ +DYL FLC++
Sbjct: 571 LMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCAL 630
Query: 652 GYNQTTIKRFFGTQYEC--SKSANLEDFNYPSISVPMIS-GSVTLSRKLKNVGSPSNYAA 708
Y I+ Y C SKS ++ D NYPS +V + G+ +R + +VG Y+
Sbjct: 631 NYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSV 690
Query: 709 SV-REPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRS 767
V E G+ +SVEP +L FK+ E+KS+ VT S + FG + W+DGKH V S
Sbjct: 691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGS 750
Query: 768 PIVVN 772
P+ ++
Sbjct: 751 PVAIS 755
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/777 (39%), Positives = 435/777 (55%), Gaps = 28/777 (3%)
Query: 11 FVLCYTLISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTE 70
F LC + + KQ+Y+V L ++ + + D E + E
Sbjct: 6 FFLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEE 65
Query: 71 KARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENN 130
+ + YSY + I GFAA L E EA + P+VV++ P+ ++ TT S+ F+ L+
Sbjct: 66 EPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGF 125
Query: 131 GVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVR 189
G +S W K RFG+ II LDTGVWPES SF D G +P +WKG CQ
Sbjct: 126 G---NSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSS 182
Query: 190 CNRKLIGARYFNRAYAAYVKQHNISVNFNN---TARDHEGHGTHTLSTAGGNLVPGVNVF 246
CNRKLIGAR+F R + S N +ARD GHGTHT ST GG+ V NV
Sbjct: 183 CNRKLIGARFFIRGHRV-ANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVL 241
Query: 247 GMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306
G G G A+G +P A +A YKVCW C+ +DIL D+AI D VDV+S+SLGG P
Sbjct: 242 GNGAGVARGMAPGAHIAVYKVCW----FNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPI 297
Query: 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVEL 366
++D AIG F A++ GI V+C+A N+GP +V N +PW+ T+GA TLDR F V L
Sbjct: 298 PLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRL 357
Query: 367 RNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCL 426
NG+ G SL P ++ D + C G+L E+++GK+++C
Sbjct: 358 ANGKLLYGESL---YPGKGIKNAGREVEVIYVTGGDKGSEFCLRGSLPREEIRGKMVICD 414
Query: 427 RGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSS 486
RG R +KG AG V MIL N + + E + D H LPA+ I Y + V + Y+ ++
Sbjct: 415 RGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNAT 474
Query: 487 DNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGAT 546
P I T + +P +A FS+ GP+ P ILKPD+ APGVNIIAA+ +G T
Sbjct: 475 VKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWPQNLGPT 534
Query: 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANP 606
LPYD+RR+ + +MSGTSMSCPHV+G+ L+++A+P+WSP+AI+SA+MTTA D
Sbjct: 535 GLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKA 594
Query: 607 MRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQY 666
++DG+ K A F+ G+GH+ P +A++PGLVY++ DY+ +LC++G+ ++ I
Sbjct: 595 IKDGN-KPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAITHKNV 653
Query: 667 ECSKSANLE---DFNYPSISVPMISGSVT--LSRKLKNVGSP-SNYAASVREPLGISVSV 720
C+ NYPSI+V G T ++R++ NVGSP S Y+ +V+ P GI V V
Sbjct: 654 SCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIV 713
Query: 721 EPKILAFKKIGEEKSFKV--TLKPKWSGAP-DNYRFGELTWTDGKHY---VRSPIVV 771
PK L FK + + S++V LK K G ++ G+LTW + + VRSPI V
Sbjct: 714 NPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 523 bits (1348), Expect = e-147, Method: Compositional matrix adjust.
Identities = 306/751 (40%), Positives = 438/751 (58%), Gaps = 63/751 (8%)
Query: 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAA 89
K Y+VY+G P+ +A L H L +GST A +++ ++Y+ NGFA
Sbjct: 31 KNIYIVYMGRKLEDPD--SAHLH-----HRAMLEQVVGST-FAPESVLHTYKRSFNGFAV 82
Query: 90 TLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDII 149
L EEEA +IA VVS+F N+ +LHTTRSWDF+ + + + +I+
Sbjct: 83 KLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFP-------LTVPRRSQVESNIV 135
Query: 150 IANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVK 209
+ LDTG+WPES SF DEG+ P P +WKGTC+ T RCNRK+IGAR +Y
Sbjct: 136 VGVLDTGIWPESPSFDDEGFSPPPPKWKGTCE--TSNNFRCNRKIIGAR-------SYHI 186
Query: 210 QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCW 269
IS N RD GHGTHT STA G LV N++G+G GTA+GG P AR+AAYKVCW
Sbjct: 187 GRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW 246
Query: 270 PQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG-DPADYFNDGTAIGAFHAVKHGIVVV 328
+DG C D DIL +D AI DGVD+IS+S+GG +P YF D AIG+FHAV+ GI+
Sbjct: 247 ---NDG-CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTS 302
Query: 329 CSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYP 388
SA N GP T ++SPW+++V AST+DR+F V++ NGQ F+G S++ ++ +YP
Sbjct: 303 NSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTF--DNQYYP 360
Query: 389 LITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448
L++G D + + C + +++ +KGKI+VC + + ++ GA G++
Sbjct: 361 LVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC---EASFGPHEFFKSLDGAAGVL 417
Query: 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFM 508
+ +S AD + LP+S + D + L YI S +P I +T LNA +P +
Sbjct: 418 M----TSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVV 472
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAF--TGAIGATELPYDTRRIPYNIMSGTSMS 566
SFSS GPN+ T +++KPDI+ PGV I+AA+ +G R +NI+SGTSMS
Sbjct: 473 VSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIR-----RNTLFNIISGTSMS 527
Query: 567 CPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
CPH+ G+ +KT +P WSP+AI+SA+MT TA+PM + F F+YGSGH+
Sbjct: 528 CPHITGIATYVKTYNPTWSPAAIKSALMT-------TASPM-NARFNPQAEFAYGSGHVN 579
Query: 627 PNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECS--KSANLEDFNYPSISV 684
P +A+ PGLVYD +E DY+ FLC GYN ++R G C+ + + D NYPS +
Sbjct: 580 PLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGL 639
Query: 685 ---PMISGSVTLSRKLKNVG-SPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTL 740
P + + +R L +V S Y A + P G+++SV P +L+F +G+ KSF +T+
Sbjct: 640 SVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV 699
Query: 741 KPKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
+ G + L W+DG HYVRSPI +
Sbjct: 700 RGSIKGFVVS---ASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 307/753 (40%), Positives = 426/753 (56%), Gaps = 55/753 (7%)
Query: 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAA 89
K Y++YLG E T +H L S S E+A++ YSY N FAA
Sbjct: 35 KDFYIIYLGDRPDNTEETI-------KTHINLLSSLNISQEEAKERKVYSYTKAFNAFAA 87
Query: 90 TLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDII 149
L EA ++ + +VVS+ N+ +KLHTT+SWDF+ L H + D+I
Sbjct: 88 KLSPHEAKKMMEMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAE-------RDVI 140
Query: 150 IANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVK 209
I LDTG+ P+S+SF D G GP P++WKG+C K CN K+IGA+YF
Sbjct: 141 IGVLDTGITPDSESFLDHGLGPPPAKWKGSC-GPYKNFTGCNNKIIGAKYFKH------- 192
Query: 210 QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCW 269
N+ + D +GHGTHT ST G LV +++G+ NGTA+G P AR+A YKVCW
Sbjct: 193 DGNVPAGEVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCW 252
Query: 270 PQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVC 329
+ C D DIL GF+ AIHDGV++IS+S+GG ADY +D ++G+FHA++ GI+ V
Sbjct: 253 AR---SGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVA 309
Query: 330 SAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPL 389
SA N GP GTVTN PWI+TV AS +DR F++ ++L NG+ F G +S P YPL
Sbjct: 310 SAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPL 369
Query: 390 ITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVA--GAVGM 447
++G+ A D A C + +LD +KVKGK++VC G G ++ + G G
Sbjct: 370 VSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMG-----GGGVESTIKSYGGAGA 424
Query: 448 ILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPF 507
I+ +D+ N A PA+ + G + YI S+ + I T P+PF
Sbjct: 425 IIVSDQYLDN---AQIFMAPATSVNSSVGDIIYRYINSTRSASAVIQ--KTRQVTIPAPF 479
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ASFSS GPN + +LKPDI APG++I+AAFT T L DT+ + I+SGTSM+C
Sbjct: 480 VASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMAC 539
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAGV +K+ HPDW+P+AI+SAI+T+A+ N K F+YG G I P
Sbjct: 540 PHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRRVN--------KDAEFAYGGGQINP 591
Query: 628 NRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQ-YECSK---SANLEDFNYPSIS 683
RA PGLVYD+ + Y+ FLC GYN TT+ GT+ CS + NYP+I
Sbjct: 592 RRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQ 651
Query: 684 VPMISGSVT----LSRKLKNVGSPSN-YAASVREPLGISVSVEPKILAFKKIGEEKSFKV 738
+ + S + R++ NVG PS+ Y A+VR P G+ ++VEP+ L+F K +++SFKV
Sbjct: 652 LTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKV 711
Query: 739 TLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
+K K P G L W +H VRSPIV+
Sbjct: 712 VVKAKQM-TPGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 170/625 (27%), Positives = 265/625 (42%), Gaps = 104/625 (16%)
Query: 80 YQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENN--------- 130
Y+ +GF+ L E ++ DV +++PN K + D + E+
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSA 165
Query: 131 GVIHSSSAWGKGRFGEDIIIANLDTGVW---PESKSFSDEGYGPVPSRWKGTCQNSTKEG 187
I ++ AW G G+ I +A +DTGV P+ K + +G ++KG
Sbjct: 166 PYIGANDAWDLGYTGKGIKVAIIDTGVEYNHPDLK----KNFG----QYKG--------- 208
Query: 188 VRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFG 247
++ Y + + + A DH GTH T N
Sbjct: 209 ------------YDFVDNDYDPKETPTGDPRGEATDH---GTHVAGTVAAN--------- 244
Query: 248 MGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPAD 307
GT KG +P A + AY+V P G +++ G + A+ DG DV+++SLG +
Sbjct: 245 ---GTIKGVAPDATLLAYRVLGP---GGSGTTENVIAGVERAVQDGADVMNLSLG----N 294
Query: 308 YFND---GTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTLDREFQN 362
N+ T+ A+ G+V V S NSGP TV + S I+VGA+ L N
Sbjct: 295 SLNNPDWATSTALDWAMSEGVVAVTSNGNSGPNGWTVGSPGTSREAISVGATQLPL---N 351
Query: 363 FVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKI 422
+ G + + +D + L K + K+ + + + GK+
Sbjct: 352 EYAVTFGSYSSAKVMGYNKEDD-----VKALNNKEVELVEAGIGEAKD--FEGKDLTGKV 404
Query: 423 LVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDY 482
V RG A VDK A AGA+GM++ N+ S E +P +++ +DG K++
Sbjct: 405 AVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSA 464
Query: 483 IKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGA 542
+K+ + + + S L + +A FSS GP T ++KPDI+APGVNI++
Sbjct: 465 LKAGETKTTFKLTVSKALGEQ----VADFSSRGPVMDT-WMIKPDISAPGVNIVST---- 515
Query: 543 IGATELPYDTRRIPYNIMS--GTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600
+P PY S GTSM+ PH+AG V ++K A P WS I++AIM TA T
Sbjct: 516 -----IPTHDPDHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVT- 569
Query: 601 DNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKR 660
++D + + G+G R A+ + Y FL G N+T +
Sbjct: 570 ------LKDSDGEVYPHNAQGAGSARIMNAIKADSLVSPGSYSYGTFLKENG-NETKNET 622
Query: 661 F-FGTQYECSKSANLE-DFNYPSIS 683
F Q KS LE FN IS
Sbjct: 623 FTIENQSSIRKSYTLEYSFNGSGIS 647
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 135/550 (24%), Positives = 220/550 (40%), Gaps = 90/550 (16%)
Query: 130 NGVIHSSSAWGKGRF-GEDIIIANLDTGVWPESKS--FSDEGYGPVPSRWKGTCQNSTKE 186
N + + + W ++ GE +++ +DTG+ P K SD+ + ++ K
Sbjct: 192 NSMANVQAVWSNYKYKGEGTVVSVIDTGIDPTHKDMRLSDDKDVKLTKYDVEKFTDTAKH 251
Query: 187 GVRCNRKLIGARYFNRA--YAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
G RYF Y +N ++ + E HG H G N
Sbjct: 252 G----------RYFTSKVPYGFNYADNNDTITDDTV---DEQHGMHVAGIIGAN------ 292
Query: 245 VFGMGNGTAK---GGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301
G G+ K G +P+A++ A KV + A ++ + + G DV+++SL
Sbjct: 293 --GTGDDPTKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSL 350
Query: 302 GGDPADYFNDGTAIGAFH-AVKHGIVVVCSAANSGP------------------ELGTVT 342
G D + + I A A + G V SA NSG E+
Sbjct: 351 GSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGSATQGVNKDYYGLQDNEMVGTP 410
Query: 343 NVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGL--QAKAANA 400
S TV ++ V + +G+ + + L ++ F TG Q K
Sbjct: 411 GTSRGATTVASAENTDVISQAVTITDGKDLQLGPETIQLSSNDF----TGSFDQKKFYVV 466
Query: 401 DDTAASLCKNGALDHE-KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459
D + L K A D+ KGKI + RG+ DK + A AGA G+I+ N+ + +
Sbjct: 467 KDASGDLSKGAAADYTADAKGKIAIVKRGELNFADKQKYAQAAGAAGLIIVNNDGTATPL 526
Query: 460 TAD--PHFLPASQITYKDGVKVLDYIKSS-DNPMGYITSPSTYLNAK-PSPFMASFSSAG 515
T+ P ++ K G K++D++ + D+ +G + + N K M+ F+S G
Sbjct: 527 TSIRLTTTFPTFGLSSKTGQKLVDWVTAHPDDSLGVKIALTLLPNQKYTEDKMSDFTSYG 586
Query: 516 PNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVG 575
P ++ KPDITAPG NI + Y MSGTSM+ P +AG
Sbjct: 587 P--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIAGSQA 631
Query: 576 LLKTA--------HPDWSP---SAIRSAIMTTARTRDNTANPMRDGSFKK--ATPFSYGS 622
LLK A + D+ +A+ + T NTA P+ D ++ +P G+
Sbjct: 632 LLKQALNNKNNPFYADYKQLKGTALTDFLKTVEM---NTAQPINDINYNNVIVSPRRQGA 688
Query: 623 GHIRPNRAMD 632
G + A+D
Sbjct: 689 GLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P15926|C5AP_STRPY C5a peptidase OS=Streptococcus pyogenes GN=scpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 196/464 (42%), Gaps = 96/464 (20%)
Query: 166 DEGYGPVPSRWKGT----CQNSTKEGVRCNRKLIGARY---FNRAYAAYVKQHNISVNFN 218
D G+ W+ T + +KE + +K G Y N A Y H+ S +
Sbjct: 130 DAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY---HDYSKD-G 185
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
TA D E HGTH GN P +G P+A++ +V ++ +G
Sbjct: 186 KTAVDQE-HGTHVSGILSGN-APSETKEPY---RLEGAMPEAQLLLMRV---EIVNGL-- 235
Query: 279 DADILKGFDMAIHDGVD----VISVSLGGDPADYFN--DGTAIGAFHAVKHGIVVVCSAA 332
AD + + AI D V+ VI++S G Y N D T +A G+ +V SA
Sbjct: 236 -ADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAG 294
Query: 333 NSG-------------PELGTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377
N P+ G V + +TV + + D++ ++ +
Sbjct: 295 NDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETAMVKTDDQ------ 348
Query: 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGR 437
D P+++ + + A D A + D + VKGKI + RGD DK
Sbjct: 349 -----QDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKVA 403
Query: 438 QAAVAGAVGMILCNDKSSGNEITADPHF--LPASQITYKDGVKVLDYIKSSDNPMGYITS 495
A AGAVG+++ +++ G I P+ +PA+ I+ KDG+ + DNP IT
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIEL-PNVDQMPAAFISRKDGLLL------KDNPQKTIT- 455
Query: 496 PSTYLNAKPSPF-------MASFSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAIGATE 547
NA P ++ FSS G +T + +KPDI APG +I+++
Sbjct: 456 ----FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN----- 503
Query: 548 LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLK----TAHPDWSPS 587
Y +SGTSMS P VAG++GLL+ T +PD +PS
Sbjct: 504 --------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 539
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes (taxid: 1314) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 133/550 (24%), Positives = 218/550 (39%), Gaps = 90/550 (16%)
Query: 130 NGVIHSSSAWGKGRF-GEDIIIANLDTGVWPESKS--FSDEGYGPVPSRWKGTCQNSTKE 186
N + + + W ++ GE +++ +D+G+ P K SD+ + ++ K
Sbjct: 192 NSMANVQAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKH 251
Query: 187 GVRCNRKLIGARYFNRA--YAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
G RYFN Y +N ++ + E HG H G N
Sbjct: 252 G----------RYFNSKVPYGFNYADNNDTITDDTV---DEQHGMHVAGIIGAN------ 292
Query: 245 VFGMGNGTAK---GGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301
G G+ AK G +P+A++ A KV + A ++ + + G DV+++SL
Sbjct: 293 --GTGDDPAKSVVGVAPEAQLLAMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSL 350
Query: 302 GGDPADYFNDGTAIGAFH-AVKHGIVVVCSAANSGP------------------ELGTVT 342
G D + + + A A + G V SA NSG E+
Sbjct: 351 GSDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTP 410
Query: 343 NVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGL--QAKAANA 400
S TV ++ V + +G + + L ++ F TG Q K
Sbjct: 411 GTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDF----TGSFDQKKFYVV 466
Query: 401 DDTAASLCKNGALDHE-KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459
D + +L K D+ KGKI + RG+ DK + A AGA G+I+ N+ + +
Sbjct: 467 KDASGNLSKGKVADYTADAKGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDGTATPV 526
Query: 460 T--ADPHFLPASQITYKDGVKVLDYIKSS-DNPMGYITSPSTYLNAK-PSPFMASFSSAG 515
T A P ++ G K++D++ + D+ +G + + N K M+ F+S G
Sbjct: 527 TSMALTTTFPTFGLSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTEDKMSDFTSYG 586
Query: 516 PNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVG 575
P ++ KPDITAPG NI + Y MSGTSM+ P +AG
Sbjct: 587 P--VSNLSFKPDITAPGGNIWST-------------QNNNGYTNMSGTSMASPFIAGSQA 631
Query: 576 LLKTA-----------HPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK--ATPFSYGS 622
LLK A + +A+ + T NTA P+ D ++ +P G+
Sbjct: 632 LLKQALNNKNNPFYAYYKQLKGTALTDFLKTVEM---NTAQPINDINYNNVIVSPRRQGA 688
Query: 623 GHIRPNRAMD 632
G + A+D
Sbjct: 689 GLVDVKAAID 698
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 196/464 (42%), Gaps = 96/464 (20%)
Query: 166 DEGYGPVPSRWKGT----CQNSTKEGVRCNRKLIGARY---FNRAYAAYVKQHNISVNFN 218
D G+ W+ T + +KE + +K G Y N A Y H+ S +
Sbjct: 130 DAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKIAYY---HDYSKD-G 185
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
TA D E HGTH GN P +G P+A++ +V ++ +G
Sbjct: 186 KTAVDQE-HGTHVSGILSGN-APSETKEPY---RLEGAMPEAQLLLMRV---EIVNGL-- 235
Query: 279 DADILKGFDMAIHDGVD----VISVSLGGDPADYFN--DGTAIGAFHAVKHGIVVVCSAA 332
AD + + AI D V+ VI++S G Y N D T +A G+ +V SA
Sbjct: 236 -ADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAG 294
Query: 333 NSG-------------PELGTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377
N P+ G V + +TV + + D++ ++ +
Sbjct: 295 NDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQ------ 348
Query: 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGR 437
D P+++ + + A D A + D + VKGKI + RGD DK
Sbjct: 349 -----QDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIA 403
Query: 438 QAAVAGAVGMILCNDKSSGNEITADPHF--LPASQITYKDGVKVLDYIKSSDNPMGYITS 495
A AGAVG+++ +++ G I P+ +PA+ I+ KDG+ + +NP IT
Sbjct: 404 NAKKAGAVGVLIYDNQDKGFPIEL-PNVDQMPAAFISRKDGLLL------KENPQKTIT- 455
Query: 496 PSTYLNAKPSPF-------MASFSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAIGATE 547
NA P ++ FSS G +T + +KPDI APG +I+++
Sbjct: 456 ----FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANN----- 503
Query: 548 LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLK----TAHPDWSPS 587
Y +SGTSMS P VAG++GLL+ T +PD +PS
Sbjct: 504 --------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 539
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 192/442 (43%), Gaps = 78/442 (17%)
Query: 177 KGTCQNSTKEGVRCNRKLIGARY---FNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLS 233
K + +KE + +K G Y N A Y H+ S + TA D E HGTH
Sbjct: 147 KSKARYQSKEDLEKAKKDHGITYGEWVNDKVAYY---HDYSKD-GKTAVDQE-HGTHVSG 201
Query: 234 TAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDG 293
GN P +G P+A++ +V ++ +G AD + + AI D
Sbjct: 202 ILSGN-APSETKEPY---RLEGAMPEAQLLLMRV---EIVNGL---ADYARNYAQAIRDA 251
Query: 294 VD----VISVSLGGDPADYFN--DGTAIGAFHAVKHGIVVVCSAANSG------------ 335
V+ VI++S G Y N D T +A G+ +V SA N
Sbjct: 252 VNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLAD 311
Query: 336 -PELGTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITG 392
P+ G V + +TV + + D++ ++ + D P+++
Sbjct: 312 HPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQ-----------QDKEMPVLST 360
Query: 393 LQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCND 452
+ + A D A + D + VKGKI + RGD DK A AGAVG+++ ++
Sbjct: 361 NRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDN 420
Query: 453 KSSGNEITADPHF--LPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510
+ G I P+ +PA+ I+ KDG+ + D K + + + +P A + ++
Sbjct: 421 QDKGFPIEL-PNVDQMPAAFISRKDGLLLKDNSKKT---ITFNATPKVLPTASGTK-LSR 475
Query: 511 FSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPH 569
FSS G +T + +KPDI APG +I+++ Y +SGTSMS P
Sbjct: 476 FSSWG---LTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPL 519
Query: 570 VAGVVGLLK----TAHPDWSPS 587
VAG++GLL+ T +PD +PS
Sbjct: 520 VAGIMGLLQKQYETQYPDMTPS 541
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| 255568498 | 761 | Xylem serine proteinase 1 precursor, put | 0.962 | 0.989 | 0.694 | 0.0 | |
| 224089513 | 772 | predicted protein [Populus trichocarpa] | 0.951 | 0.963 | 0.703 | 0.0 | |
| 30697281 | 778 | Subtilase family protein [Arabidopsis th | 0.953 | 0.958 | 0.672 | 0.0 | |
| 9757901 | 760 | serine protease-like protein [Arabidopsi | 0.939 | 0.967 | 0.675 | 0.0 | |
| 225462068 | 745 | PREDICTED: subtilisin-like protease-like | 0.948 | 0.995 | 0.674 | 0.0 | |
| 296090005 | 803 | unnamed protein product [Vitis vinifera] | 0.946 | 0.921 | 0.672 | 0.0 | |
| 225447456 | 769 | PREDICTED: subtilisin-like protease [Vit | 0.955 | 0.971 | 0.652 | 0.0 | |
| 297796935 | 776 | subtilase family protein [Arabidopsis ly | 0.945 | 0.952 | 0.679 | 0.0 | |
| 26451139 | 756 | putative subtilisin-like protease [Arabi | 0.916 | 0.948 | 0.674 | 0.0 | |
| 224129258 | 769 | predicted protein [Populus trichocarpa] | 0.969 | 0.985 | 0.643 | 0.0 |
| >gi|255568498|ref|XP_002525223.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223535520|gb|EEF37189.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/760 (69%), Positives = 619/760 (81%), Gaps = 7/760 (0%)
Query: 5 ISKLSLFVLCYTLISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGS 64
S++S+ +L +T+ L Q PP+FAIK++YVVYLGSHAHGP+V+ ADL VTDSH+EFLGS
Sbjct: 3 FSRVSVVLLFFTVWCLVQ-PPAFAIKKAYVVYLGSHAHGPQVSEADLHAVTDSHYEFLGS 61
Query: 65 FLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDF 124
FLGS ++A DA+ YSY+N INGF+A LEEEEAAEIAKHP VVS+F N+ K+LHT SW+F
Sbjct: 62 FLGSPDEATDALIYSYRNQINGFSAMLEEEEAAEIAKHPKVVSVFLNQAKQLHTIHSWEF 121
Query: 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNST 184
M+LE NG + S W K + GEDIIIANLDTGVWPESKSFSDEGYGPV SRWKG+C+N+T
Sbjct: 122 MMLERNGGVQPKSLWKKAKLGEDIIIANLDTGVWPESKSFSDEGYGPVSSRWKGSCENTT 181
Query: 185 KEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
GV CNRKLIGA+ ++R Y +YV N S+N ARDHEGHG+HTLSTAGGN VPG N
Sbjct: 182 SAGVPCNRKLIGAKSYSRGYISYVGSLNSSLN---NARDHEGHGSHTLSTAGGNFVPGTN 238
Query: 245 VFGMGNGTAKGGSPKARVAAYKVCWPQVSD-GQCFDADILKGFDMAIHDGVDVISVSLGG 303
V+G+ N T KGGSPKARVA+YKVCWP V++ G CFD+D++K FD AIHDGVDV+SVS+GG
Sbjct: 239 VYGLANVTPKGGSPKARVASYKVCWPAVNNTGGCFDSDMMKAFDDAIHDGVDVLSVSVGG 298
Query: 304 DPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNF 363
DP DYFNDG AIG+FHAVK G+VVVCSA NSGP GTV+NV+PWIITVGASTLDREFQ F
Sbjct: 299 DPIDYFNDGIAIGSFHAVKKGVVVVCSAGNSGPTPGTVSNVAPWIITVGASTLDREFQTF 358
Query: 364 VELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423
VEL NG+R KGTSLSK +P YPLI+G Q KAA+A + A LCK G+LD +KVKGKIL
Sbjct: 359 VELHNGRRLKGTSLSKGMPESKLYPLISGAQGKAASAFEKDAELCKPGSLDPKKVKGKIL 418
Query: 424 VCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYI 483
CLRGD ARVDKGRQAA AGA GMILCNDK+SGNE+ ADPH LPAS + Y DG+ VL YI
Sbjct: 419 ACLRGDNARVDKGRQAAEAGAAGMILCNDKASGNEVIADPHVLPASHLNYADGLAVLTYI 478
Query: 484 KSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAI 543
+S NP+ YIT+P+ KP+PFMA+FSS GPN +TPEILKPDITAPGVNIIAAFT A
Sbjct: 479 NTSSNPLAYITTPTAATGVKPAPFMAAFSSIGPNTVTPEILKPDITAPGVNIIAAFTEAT 538
Query: 544 GATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
T+L +D RR+PY MSGTSMSCPHV+GV GLLK HPDWSP+AIRSA+ TTAR+RDNT
Sbjct: 539 SPTDLEFDKRRVPYTTMSGTSMSCPHVSGVAGLLKKLHPDWSPAAIRSALTTTARSRDNT 598
Query: 604 ANPMRDGS-FKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF 662
+PM DGS F+K+TPFS+GSGHIRPNRAMDPGLVYDL +DYLDFLC++GYN+T+IK
Sbjct: 599 VHPMLDGSTFEKSTPFSHGSGHIRPNRAMDPGLVYDLGVNDYLDFLCALGYNETSIKALN 658
Query: 663 -GTQYECSKSANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVE 721
G YEC KSA+L DFNYPS++VP + GSVT +RKLKNVGSP Y V++P GISVSVE
Sbjct: 659 DGEPYECPKSASLLDFNYPSMTVPKLRGSVTATRKLKNVGSPGKYQVVVKQPYGISVSVE 718
Query: 722 PKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDG 761
P+ L F KIGEEKSFKVT + KW GA +Y FG LTWTDG
Sbjct: 719 PRALTFDKIGEEKSFKVTFRAKWEGAAKDYEFGGLTWTDG 758
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224089513|ref|XP_002308740.1| predicted protein [Populus trichocarpa] gi|222854716|gb|EEE92263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/748 (70%), Positives = 605/748 (80%), Gaps = 4/748 (0%)
Query: 25 PSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHI 84
P+FAIK+SYVVYLGSHAHGP+++ DLD V DSH EFL S+LGS EKARDAI YSY HI
Sbjct: 22 PAFAIKKSYVVYLGSHAHGPQISKVDLDAVADSHQEFLASYLGSREKARDAIIYSYDRHI 81
Query: 85 NGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRF 144
NGFAA LEEEEAAEIA+HP+VVS+F N+G+KLHTT SWDFMLLE +GV+ SS W + RF
Sbjct: 82 NGFAAMLEEEEAAEIARHPNVVSVFLNQGRKLHTTHSWDFMLLEKDGVVDPSSLWKRARF 141
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
GED IIANLDTGVWPES SFS+EG GPVPS+WKGTC+N T GV CNRKLIGARYFNR Y
Sbjct: 142 GEDSIIANLDTGVWPESLSFSEEGIGPVPSKWKGTCENDTAVGVPCNRKLIGARYFNRGY 201
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
AY S +N+ARD +GHGTHTLSTAGGN VPG NVFG+GNGTAKGGSPKARVA+
Sbjct: 202 IAYAGGLTSS---DNSARDKDGHGTHTLSTAGGNFVPGANVFGLGNGTAKGGSPKARVAS 258
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHG 324
YKVCWP V+ +CFDADI+K FDMAIHDGVDV+SVSLGG+P DYFNDG AIGAFHAVK+G
Sbjct: 259 YKVCWPPVNGSECFDADIMKAFDMAIHDGVDVLSVSLGGEPTDYFNDGLAIGAFHAVKNG 318
Query: 325 IVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPND 384
I VVCSA NSGP GTVTN +PWIITVGASTLDREF+ FVELRNG+R +GTSLS LP
Sbjct: 319 ISVVCSAGNSGPMDGTVTNNAPWIITVGASTLDREFETFVELRNGKRLQGTSLSSPLPEK 378
Query: 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGA 444
FYPLITG QAKAANA A LCK +LDHEK KGK++VCLRG+T R+DKG QAA+ GA
Sbjct: 379 KFYPLITGEQAKAANASAADALLCKPKSLDHEKAKGKVVVCLRGETGRMDKGYQAALVGA 438
Query: 445 VGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKP 504
GMILCNDK+SGNEI ADPH LPA+QITY DG+ V YI S+D+ +GYI++P+ L KP
Sbjct: 439 AGMILCNDKASGNEIIADPHVLPAAQITYTDGLAVFAYINSTDHALGYISAPTAKLGTKP 498
Query: 505 SPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTS 564
+P +A+FSS GPN +TPEILKPDITAPGVNIIAAF+ AI T+ +D R+ P+ SGTS
Sbjct: 499 APSIAAFSSRGPNTVTPEILKPDITAPGVNIIAAFSEAISPTDFDFDKRKSPFITESGTS 558
Query: 565 MSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDG-SFKKATPFSYGSG 623
MSCPHVAG VGLLKT HPDWSP+AIRSAIMTTARTR NT PM DG +ATPFSYGSG
Sbjct: 559 MSCPHVAGAVGLLKTLHPDWSPAAIRSAIMTTARTRANTMTPMVDGRDGLEATPFSYGSG 618
Query: 624 HIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSANLEDFNYPSIS 683
HIRPNRA DPGLVYDLS +DYLDFLC+ GYN T I+ F Y+C +S ++ DFN PSI+
Sbjct: 619 HIRPNRAQDPGLVYDLSINDYLDFLCASGYNSTMIEPFSDGPYKCPESTSIFDFNNPSIT 678
Query: 684 VPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPK 743
+ + S+++ RK+KNVG YAA VREP GI VSVEP IL F+ G+EKSFKVT + K
Sbjct: 679 IRQLRNSMSVIRKVKNVGLTGTYAAHVREPYGILVSVEPSILTFENKGDEKSFKVTFEAK 738
Query: 744 WSGAPDNYRFGELTWTDGKHYVRSPIVV 771
W G +++ FG LTWTDG+HYVRSPIVV
Sbjct: 739 WDGVTEDHEFGTLTWTDGRHYVRSPIVV 766
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30697281|ref|NP_200789.2| Subtilase family protein [Arabidopsis thaliana] gi|332009853|gb|AED97236.1| Subtilase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/757 (67%), Positives = 593/757 (78%), Gaps = 11/757 (1%)
Query: 18 ISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIF 77
++LF +P +FA+K+SY+VYLGSHAH P++++A LD V SH FL SF+GS E A++AIF
Sbjct: 28 VTLFFSP-AFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIF 86
Query: 78 YSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSS 137
YSY+ HINGFAA L+E EAAEIAKHPDVVS+FPNKG+KLHTT SW+FMLL NGV+H SS
Sbjct: 87 YSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSS 146
Query: 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGA 197
W K +GED IIANLDTGVWPESKSFSDEGYG VP+RWKG C + V CNRKLIGA
Sbjct: 147 LWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCH----KDVPCNRKLIGA 202
Query: 198 RYFNRAYAAYVK-QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGG 256
RYFN+ Y AY N S T RDH+GHG+HTLSTA GN VPG NVFG+GNGTA GG
Sbjct: 203 RYFNKGYLAYTGLPSNASYE---TCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGG 259
Query: 257 SPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIG 316
SPKARVAAYKVCWP V +CFDADIL + AI DGVDV+S S+GGD DY +DG AIG
Sbjct: 260 SPKARVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIG 319
Query: 317 AFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376
+FHAVK+G+ VVCSA NSGP+ GTV+NV+PW+ITVGAS++DREFQ FVEL+NGQ FKGTS
Sbjct: 320 SFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTS 379
Query: 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436
LSK LP + Y LI+ A AN + T A LCK G+LD +KVKGKILVCLRGD ARVDKG
Sbjct: 380 LSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDKG 439
Query: 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSP 496
QAA AGA GM+LCNDK+SGNEI +D H LPASQI YKDG + Y+ S+ +P GYI +P
Sbjct: 440 MQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKAP 499
Query: 497 STYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP 556
+ LN KP+PFMASFSS GPN ITP ILKPDITAPGVNIIAAFT A G T+L D RR P
Sbjct: 500 TATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTP 559
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKAT 616
+N SGTSMSCPH++GVVGLLKT HP WSP+AIRSAIMTT+RTR+N PM D SFKKA
Sbjct: 560 FNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESFKKAN 619
Query: 617 PFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF-GTQYECSKSANLE 675
PFSYGSGH++PN+A PGLVYDL+ DYLDFLC++GYN T ++ F QY C + ANL
Sbjct: 620 PFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGANLL 679
Query: 676 DFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKS 735
DFNYPSI+VP ++GS+T++RKLKNVG P+ Y A REPLG+ VSVEPK L F K GE K
Sbjct: 680 DFNYPSITVPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKI 739
Query: 736 FKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVVN 772
F++TL+P P Y FGELTWTD HYVRSPIVV
Sbjct: 740 FQMTLRP-LPVTPSGYVFGELTWTDSHHYVRSPIVVQ 775
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9757901|dbj|BAB08348.1| serine protease-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/745 (67%), Positives = 582/745 (78%), Gaps = 10/745 (1%)
Query: 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAA 89
+ SY+VYLGSHAH P++++A LD V SH FL SF+GS E A++AIFYSY+ HINGFAA
Sbjct: 21 RYSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIFYSYKRHINGFAA 80
Query: 90 TLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDII 149
L+E EAAEIAKHPDVVS+FPNKG+KLHTT SW+FMLL NGV+H SS W K +GED I
Sbjct: 81 ILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSSLWNKAGYGEDTI 140
Query: 150 IANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVK 209
IANLDTGVWPESKSFSDEGYG VP+RWKG C + V CNRKLIGARYFN+ Y AY
Sbjct: 141 IANLDTGVWPESKSFSDEGYGAVPARWKGRCH----KDVPCNRKLIGARYFNKGYLAYTG 196
Query: 210 -QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVC 268
N S T RDH+GHG+HTLSTA GN VPG NVFG+GNGTA GGSPKARVAAYKVC
Sbjct: 197 LPSNASYE---TCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKARVAAYKVC 253
Query: 269 WPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
WP V +CFDADIL + AI DGVDV+S S+GGD DY +DG AIG+FHAVK+G+ VV
Sbjct: 254 WPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIGSFHAVKNGVTVV 313
Query: 329 CSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYP 388
CSA NSGP+ GTV+NV+PW+ITVGAS++DREFQ FVEL+NGQ FKGTSLSK LP + Y
Sbjct: 314 CSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTSLSKPLPEEKMYS 373
Query: 389 LITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448
LI+ A AN + T A LCK G+LD +KVKGKILVCLRGD ARVDKG QAA AGA GM+
Sbjct: 374 LISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDKGMQAAAAGAAGMV 433
Query: 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFM 508
LCNDK+SGNEI +D H LPASQI YKDG + Y+ S+ +P GYI +P+ LN KP+PFM
Sbjct: 434 LCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKAPTATLNTKPAPFM 493
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GPN ITP ILKPDITAPGVNIIAAFT A G T+L D RR P+N SGTSMSCP
Sbjct: 494 ASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTPFNTESGTSMSCP 553
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
H++GVVGLLKT HP WSP+AIRSAIMTT+RTR+N PM D SFKKA PFSYGSGH++PN
Sbjct: 554 HISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESFKKANPFSYGSGHVQPN 613
Query: 629 RAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF-GTQYECSKSANLEDFNYPSISVPMI 687
+A PGLVYDL+ DYLDFLC++GYN T ++ F QY C + ANL DFNYPSI+VP +
Sbjct: 614 KAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGANLLDFNYPSITVPNL 673
Query: 688 SGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGA 747
+GS+T++RKLKNVG P+ Y A REPLG+ VSVEPK L F K GE K F++TL+P
Sbjct: 674 TGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKIFQMTLRP-LPVT 732
Query: 748 PDNYRFGELTWTDGKHYVRSPIVVN 772
P Y FGELTWTD HYVRSPIVV
Sbjct: 733 PSGYVFGELTWTDSHHYVRSPIVVQ 757
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462068|ref|XP_002269877.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/746 (67%), Positives = 597/746 (80%), Gaps = 4/746 (0%)
Query: 27 FAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHING 86
+ SY+VYLG+H+HGPE T+ DLDRVT+SH++FLGSFLGS EKA+DA+FYSY +ING
Sbjct: 1 MVMNPSYIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNING 60
Query: 87 FAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGE 146
FAA LEEEEAAEIAKHP+V+S+F NKG+KLHTTRSW F+ LE NGVI +S W K RFGE
Sbjct: 61 FAAILEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGE 120
Query: 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAA 206
D II NLDTGVWPESKSFSDEG G VPS+W+GTCQ+ TK V CNRKLIGARYFN+ YAA
Sbjct: 121 DTIIGNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAA 180
Query: 207 YVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYK 266
Y N S N +ARDHEGHG+HTLSTAGG+LV G +VFG GNGTAKGGSP ARVAAYK
Sbjct: 181 YAGPLNSSFN---SARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYK 237
Query: 267 VCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIV 326
VCWPQV++G CFDADI+ FD AIHDGVDV+SVSLGGD +DYF DG AIG+FHAVK GIV
Sbjct: 238 VCWPQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIV 297
Query: 327 VVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLS-KSLPNDT 385
VV SA N GP+ +V+NVSPW+ITVGAST+DREF N+V L N + KG SLS K LP++
Sbjct: 298 VVSSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKGMSLSTKGLPSNK 357
Query: 386 FYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAV 445
FYP+I+ L AKAANA A LCK G L+ +KVKGKILVCLRG+ RVDKG QAA+AGAV
Sbjct: 358 FYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAALAGAV 417
Query: 446 GMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPS 505
G IL ND SGNE+ ADPH LPAS + + DG V +YI S+ NPM Y+T T L KP+
Sbjct: 418 GFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLGIKPA 477
Query: 506 PFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSM 565
PFMASFSS GPN ITPEILKPDITAPGVNIIAA++ +IG T+ +D RRIP+N SGTSM
Sbjct: 478 PFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQSGTSM 537
Query: 566 SCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHI 625
SCPH++G+VGLLKT HPDWSP+AI+SAIMT+ARTRD+ PM + S KATPFSYG+GH+
Sbjct: 538 SCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLNSSNLKATPFSYGAGHV 597
Query: 626 RPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSANLEDFNYPSISVP 685
RPNRAMDPGLVYD + +DYL+FLC+IGYN+T ++ F Y+C KS +L FNYPSI+ P
Sbjct: 598 RPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQKPYKCPKSFSLTGFNYPSITAP 657
Query: 686 MISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWS 745
+SGSVT+SR +KNVG+P Y ASV+ P GISV+V+P L F++ GEEKSF++TLK K
Sbjct: 658 NLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLTLKAKGR 717
Query: 746 GAPDNYRFGELTWTDGKHYVRSPIVV 771
++Y FG L W+DG+HYVRS IVV
Sbjct: 718 RVAEDYVFGRLIWSDGQHYVRSSIVV 743
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090005|emb|CBI39824.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/750 (67%), Positives = 598/750 (79%), Gaps = 10/750 (1%)
Query: 29 IKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFA 88
+ QSY+VYLG+H+HGPE T+ DLDRVT+SH++FLGSFLGS EKA+DA+FYSY +INGFA
Sbjct: 55 VLQSYIVYLGAHSHGPEPTSVDLDRVTNSHYDFLGSFLGSNEKAKDAMFYSYNKNINGFA 114
Query: 89 ATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDI 148
A LEEEEAAEIAKHP+V+S+F NKG+KLHTTRSW F+ LE NGVI +S W K RFGED
Sbjct: 115 AILEEEEAAEIAKHPNVISVFLNKGRKLHTTRSWHFLDLEKNGVIQPNSIWKKARFGEDT 174
Query: 149 IIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYV 208
II NLDTGVWPESKSFSDEG G VPS+W+GTCQ+ TK V CNRKLIGARYFN+ YAAY
Sbjct: 175 IIGNLDTGVWPESKSFSDEGMGLVPSKWRGTCQDETKNAVTCNRKLIGARYFNKGYAAYA 234
Query: 209 KQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVC 268
N S N +ARDHEGHG+HTLSTAGG+LV G +VFG GNGTAKGGSP ARVAAYKVC
Sbjct: 235 GPLNSSFN---SARDHEGHGSHTLSTAGGSLVYGASVFGYGNGTAKGGSPGARVAAYKVC 291
Query: 269 WPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
WPQV++G CFDADI+ FD AIHDGVDV+SVSLGGD +DYF DG AIG+FHAVK GIVVV
Sbjct: 292 WPQVNNGGCFDADIMAAFDAAIHDGVDVLSVSLGGDASDYFTDGLAIGSFHAVKRGIVVV 351
Query: 329 CSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFK------GTSLS-KSL 381
SA N GP+ +V+NVSPW+ITVGAST+DREF N+V L N + K G SLS K L
Sbjct: 352 SSAGNDGPKDASVSNVSPWMITVGASTIDREFTNYVALGNRKHLKNEHLQMGMSLSTKGL 411
Query: 382 PNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAV 441
P++ FYP+I+ L AKAANA A LCK G L+ +KVKGKILVCLRG+ RVDKG QAA+
Sbjct: 412 PSNKFYPVISSLDAKAANASAQDAILCKPGTLNPKKVKGKILVCLRGENPRVDKGEQAAL 471
Query: 442 AGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLN 501
AGAVG IL ND SGNE+ ADPH LPAS + + DG V +YI S+ NPM Y+T T L
Sbjct: 472 AGAVGFILANDMQSGNELIADPHVLPASHVNFSDGAAVFNYINSTKNPMAYLTRVRTQLG 531
Query: 502 AKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMS 561
KP+PFMASFSS GPN ITPEILKPDITAPGVNIIAA++ +IG T+ +D RRIP+N S
Sbjct: 532 IKPAPFMASFSSKGPNTITPEILKPDITAPGVNIIAAYSESIGPTDQTFDKRRIPFNAQS 591
Query: 562 GTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYG 621
GTSMSCPH++G+VGLLKT HPDWSP+AI+SAIMT+ARTRD+ PM + S KATPFSYG
Sbjct: 592 GTSMSCPHISGIVGLLKTLHPDWSPAAIKSAIMTSARTRDDNMEPMLNSSNLKATPFSYG 651
Query: 622 SGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSANLEDFNYPS 681
+GH+RPNRAMDPGLVYD + +DYL+FLC+IGYN+T ++ F Y+C KS +L FNYPS
Sbjct: 652 AGHVRPNRAMDPGLVYDSTVNDYLNFLCAIGYNETQLQIFSQKPYKCPKSFSLTGFNYPS 711
Query: 682 ISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLK 741
I+ P +SGSVT+SR +KNVG+P Y ASV+ P GISV+V+P L F++ GEEKSF++TLK
Sbjct: 712 ITAPNLSGSVTISRTVKNVGTPGTYTASVKAPPGISVAVKPNKLEFREYGEEKSFRLTLK 771
Query: 742 PKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
K ++Y FG L W+DG+HYVRS IVV
Sbjct: 772 AKGRRVAEDYVFGRLIWSDGQHYVRSSIVV 801
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447456|ref|XP_002266728.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296085071|emb|CBI28486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/751 (65%), Positives = 597/751 (79%), Gaps = 4/751 (0%)
Query: 25 PSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHI 84
P+FAI++SY+VYLG+H+HGPE ++ DLD+VT+SH+EFLGSFLGS + A++AI YSY HI
Sbjct: 22 PTFAIERSYIVYLGAHSHGPEPSSDDLDQVTESHYEFLGSFLGSRDNAKEAIIYSYTRHI 81
Query: 85 NGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRF 144
NGFAATL++ EAA+IA HP VVS+F NKG+KLHTTRSW F+ LEN+G+I S+S W K RF
Sbjct: 82 NGFAATLQDHEAAQIANHPKVVSVFLNKGRKLHTTRSWHFLGLENDGIIPSNSIWKKARF 141
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
G+D II NLDTGVWPES SFSDEG GP+PSRW+G CQN G CNRKLIGARYF++ Y
Sbjct: 142 GQDTIIGNLDTGVWPESASFSDEGMGPIPSRWRGICQNDKDAGFHCNRKLIGARYFHQGY 201
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
AA V N S + T RD EGHG+HTLSTAGGN V G +VFG GNGTAKGGSPKARVAA
Sbjct: 202 AAAVGSLNSSFH---TPRDTEGHGSHTLSTAGGNFVEGASVFGFGNGTAKGGSPKARVAA 258
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHG 324
YKVCWP V +CFDADIL FD+AIHDGVDV+S SLGG P +FND +IG+FHAVKHG
Sbjct: 259 YKVCWPPVGGNECFDADILAAFDIAIHDGVDVLSASLGGLPTPFFNDSLSIGSFHAVKHG 318
Query: 325 IVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLS-KSLPN 383
IVVVCSA NSGP GTV+N+SPW TVGAST+DR+F +++ L N +R +G SLS K+LP
Sbjct: 319 IVVVCSAGNSGPADGTVSNISPWQFTVGASTMDRQFPSYLVLGNKKRLEGGSLSPKALPP 378
Query: 384 DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAG 443
+ F+PLI+ AKAANA A LCK G LDH KVKGKILVCLRG+ ARVDKG+QAA+AG
Sbjct: 379 NKFFPLISAADAKAANASADDALLCKAGTLDHSKVKGKILVCLRGENARVDKGQQAALAG 438
Query: 444 AVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAK 503
AVGM+L N++ +GNE+ ADPH LPAS I + DGV V Y+ S+ +P+ YIT +T L K
Sbjct: 439 AVGMVLANNELTGNEVIADPHVLPASHINFTDGVAVFTYLNSTKSPIAYITPSTTELGTK 498
Query: 504 PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGT 563
P+PFMA+FSS GPN ITPEILKPDITAPGV++IAA+T A G T +D RR+ +N +SGT
Sbjct: 499 PAPFMAAFSSKGPNTITPEILKPDITAPGVSVIAAYTEAQGPTNQDFDKRRVLFNSVSGT 558
Query: 564 SMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623
SMSCPHV+G+VGLLKT HPDWSP+AIRSA+MTTART DN+ + + S+ KATPFSYG+G
Sbjct: 559 SMSCPHVSGIVGLLKTLHPDWSPAAIRSAMMTTARTMDNSMEAILNASYFKATPFSYGAG 618
Query: 624 HIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSANLEDFNYPSIS 683
H+RPNRAM+PGLVYDL+ +DYL+FLC++GYNQT IK F Y C K +L +FNYPSI+
Sbjct: 619 HVRPNRAMNPGLVYDLNVNDYLNFLCALGYNQTLIKMFSERPYTCPKPISLTNFNYPSIT 678
Query: 684 VPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPK 743
VP + GS+T++R LKNVG P Y A +R+P GISVSV+P L F KIGEEK+F +TL+ +
Sbjct: 679 VPKLHGSITVTRTLKNVGPPGTYKARIRKPTGISVSVKPDSLKFNKIGEEKTFSLTLQAE 738
Query: 744 WSGAPDNYRFGELTWTDGKHYVRSPIVVNQA 774
+GA +Y FGEL W+D KH+VRSPIVV A
Sbjct: 739 RAGAARDYVFGELIWSDAKHFVRSPIVVKAA 769
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796935|ref|XP_002866352.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312187|gb|EFH42611.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/749 (67%), Positives = 590/749 (78%), Gaps = 10/749 (1%)
Query: 25 PSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHI 84
P+FA+K+SY+VYLGSHAH ++++A LD V SH FL SF+GS E A++AIFYSY+ HI
Sbjct: 34 PAFALKKSYIVYLGSHAHPSQISSAHLDGVAHSHRTFLASFVGSHENAQEAIFYSYKRHI 93
Query: 85 NGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRF 144
NGFAA L+E EAAEIAKHPDVVS+ PNKG+KLHTT SW+FMLLE NGV+H SS W K +
Sbjct: 94 NGFAAVLDENEAAEIAKHPDVVSVIPNKGRKLHTTHSWNFMLLEKNGVVHKSSLWNKAGY 153
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
GED IIANLDTGVWPESKSFSDEGYG VP+RWKG C + V CNRKLIGARYFN+ Y
Sbjct: 154 GEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCH----KDVPCNRKLIGARYFNKGY 209
Query: 205 AAYVK-QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVA 263
AY N S+ T RDH+GHG+HTLSTA GN VPG NVFG+GNGTA GGSPKARVA
Sbjct: 210 LAYTGLPSNASLE---TCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGGSPKARVA 266
Query: 264 AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKH 323
AYKVCWP V+ +CFDADIL D AI DGVDV+S S+GGD DY +DG AIG+FHAVK+
Sbjct: 267 AYKVCWPPVNGAECFDADILAAIDAAIDDGVDVLSASVGGDAGDYMSDGIAIGSFHAVKN 326
Query: 324 GIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPN 383
G+ VVCSA NSGP+ GTV+NV+PWIITVGAS++DREFQ FVEL NGQ FKGTSLSK LP
Sbjct: 327 GVTVVCSAGNSGPKAGTVSNVAPWIITVGASSMDREFQAFVELNNGQSFKGTSLSKPLPE 386
Query: 384 DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAG 443
D Y LI+ +AK +N + T A LCK G+LD EKVKGKI+VCLRGD ARVDKG+QA AG
Sbjct: 387 DKMYSLISAEEAKVSNGNATDALLCKKGSLDPEKVKGKIVVCLRGDNARVDKGQQALAAG 446
Query: 444 AVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAK 503
A GMILCNDK+SGNEI +D H LPASQI YK+G + Y+ S+ +P GYI +P+ LN K
Sbjct: 447 AAGMILCNDKASGNEIISDAHVLPASQIDYKEGEVLFSYLSSTKDPKGYIKAPTATLNTK 506
Query: 504 PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGT 563
P+PFMASFSS GPN ITP ILKPDITAPGVNIIAAFT A T+L D RR P+N SGT
Sbjct: 507 PAPFMASFSSRGPNSITPGILKPDITAPGVNIIAAFTEATSPTDLDSDHRRTPFNTESGT 566
Query: 564 SMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623
SMSCPH++GVVGLLKT HP WSP+AIRSAIMTT+RTRDN PM D SFKKA PFSYGSG
Sbjct: 567 SMSCPHISGVVGLLKTLHPQWSPAAIRSAIMTTSRTRDNRRKPMVDESFKKANPFSYGSG 626
Query: 624 HIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF-GTQYECSKSANLEDFNYPSI 682
H++PN+A PGLVYDL+ DYLDFLC++GYN T ++ F QY C + ANL DFNYPSI
Sbjct: 627 HVQPNKAAHPGLVYDLTIGDYLDFLCAVGYNNTVVQLFAEDPQYMCRQGANLLDFNYPSI 686
Query: 683 SVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKP 742
+VP ++ S+T++RKL NVG P+ Y A REPLG+SVSVEPK L F K GE K F++TL+P
Sbjct: 687 TVPNLTDSITVTRKLTNVGPPATYNAHFREPLGVSVSVEPKQLTFNKTGEVKIFQMTLRP 746
Query: 743 KWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
K S P Y FGELTWTD HYVRSPIVV
Sbjct: 747 K-SAKPSGYVFGELTWTDSHHYVRSPIVV 774
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26451139|dbj|BAC42673.1| putative subtilisin-like protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/727 (67%), Positives = 574/727 (78%), Gaps = 10/727 (1%)
Query: 18 ISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIF 77
++LF +P +FA+K+SY+VYLGSHAH P++++A LD V SH FL SF+GS E A++AIF
Sbjct: 28 VTLFFSP-AFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLASFVGSHENAKEAIF 86
Query: 78 YSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSS 137
YSY+ HINGFAA L+E EAAEIAKHPDVVS+FPNKG+KLHTT SW+FMLL NGV+H SS
Sbjct: 87 YSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWNFMLLAKNGVVHKSS 146
Query: 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGA 197
W K +GED IIANLDTGVWPESKSFSDEGYG VP+RWKG C + V CNRKLIGA
Sbjct: 147 LWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCH----KDVPCNRKLIGA 202
Query: 198 RYFNRAYAAYVK-QHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGG 256
RYFN+ Y AY N S T RDH+GHG+HTLSTA GN VPG NVFG+GNGTA GG
Sbjct: 203 RYFNKGYLAYTGLPSNASYE---TCRDHDGHGSHTLSTAAGNFVPGANVFGIGNGTASGG 259
Query: 257 SPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIG 316
SPKARVAAYKVCWP V +CFDADIL + AI DGVDV+S S+GGD DY +DG AIG
Sbjct: 260 SPKARVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGGDAGDYMSDGIAIG 319
Query: 317 AFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376
+FHAVK+G+ VVCSA NSGP+ GTV+NV+PW+ITVGAS++DREFQ FVEL+NGQ FKGTS
Sbjct: 320 SFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKGTS 379
Query: 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436
LSK LP + Y LI+ A AN + T A LCK G+LD +KVKGKILVCLRGD ARVDKG
Sbjct: 380 LSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVDKG 439
Query: 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSP 496
QAA AGA GM+LCNDK+SGNEI +D H LPASQI YKDG + Y+ S+ +P GYI +P
Sbjct: 440 MQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIKAP 499
Query: 497 STYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP 556
+ LN KP+PFMASFSS GPN ITP ILKPDITAPGVNIIAAFT A G T+L D RR P
Sbjct: 500 TATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRRTP 559
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKAT 616
+N SGTSMSCPH++GVVGLLKT HP WSP+AIRSAIMTT+RTR+N PM D SFKKA
Sbjct: 560 FNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESFKKAN 619
Query: 617 PFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF-GTQYECSKSANLE 675
PFSYGSGH++PN+A PGLVYDL+ DYLDFLC++GYN T ++ F QY C + ANL
Sbjct: 620 PFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTCRQGANLL 679
Query: 676 DFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKS 735
DFNYPSI+VP ++GS+T++RKLKNVG P+ Y A REPLG+ VSVEPK L F K GE K
Sbjct: 680 DFNYPSITVPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKI 739
Query: 736 FKVTLKP 742
F++TL+P
Sbjct: 740 FQMTLRP 746
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129258|ref|XP_002320540.1| predicted protein [Populus trichocarpa] gi|222861313|gb|EEE98855.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1003 bits (2594), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/765 (64%), Positives = 592/765 (77%), Gaps = 7/765 (0%)
Query: 9 SLFVLCYTLISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGS 68
+L +L + ++L Q P +FA + YVVY G H+HGP+ ++ D + DSH+EFLGSFLGS
Sbjct: 7 TLCLLPFLFLTLVQRP-TFASIKPYVVYFGGHSHGPKPSSFDANLAKDSHYEFLGSFLGS 65
Query: 69 TEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLE 128
E A DAIFYSY HINGFAATLE+E AAEIAKHP VVS+F N+G+K HTT SW F+ LE
Sbjct: 66 REFAEDAIFYSYTRHINGFAATLEDEVAAEIAKHPRVVSVFLNQGRKQHTTHSWSFLGLE 125
Query: 129 NNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGV 188
+GV+ SSS W K RFGED II NLDTGVWPES+SFSDEG GPVPS+WKG CQN G
Sbjct: 126 KDGVVPSSSIWKKARFGEDAIIGNLDTGVWPESESFSDEGLGPVPSKWKGICQNGYDPGF 185
Query: 189 RCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGM 248
CNRKLIGARYFN+ YA+ V N S + T RD +GHG+HTLSTAGGN V G +VF M
Sbjct: 186 HCNRKLIGARYFNKGYASIVGHLNSSFD---TPRDEDGHGSHTLSTAGGNFVAGASVFYM 242
Query: 249 GNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADY 308
GNGTAKGGSPKARVAAYKVC+P V +CFDADIL FD AI DGVDV+SVSLGG+P +
Sbjct: 243 GNGTAKGGSPKARVAAYKVCYPPVDGDECFDADILAAFDAAISDGVDVLSVSLGGNPTAF 302
Query: 309 FNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRN 368
FND AIG+FHAVKHGIVV+CSA NSGP GTV+NV+PW ITVGAST+DREF ++V L N
Sbjct: 303 FNDSVAIGSFHAVKHGIVVICSAGNSGPVDGTVSNVAPWEITVGASTMDREFPSYVVLGN 362
Query: 369 GQRFKGTSLS-KSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLR 427
FKG SLS K+LP + F+PL++ A+A NA A LCK+G+LD EK KGKILVCLR
Sbjct: 363 KISFKGESLSAKALPKNKFFPLMSAADARATNASVENALLCKDGSLDPEKAKGKILVCLR 422
Query: 428 GDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSD 487
G ARVDKG+QAA+AGAVGM+L N+K +GNEI ADPH LP S I Y GV + YI S++
Sbjct: 423 GINARVDKGQQAALAGAVGMVLANNKDAGNEILADPHVLPVSHINYTSGVAIFKYINSTE 482
Query: 488 NPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATE 547
P+ YIT P T + KP+P +A+FSS GPN +TPEILKPDITAPGV++IAA+T A G T
Sbjct: 483 YPVAYITHPVTRIGTKPAPVVAAFSSKGPNTVTPEILKPDITAPGVSVIAAYTKAQGPTN 542
Query: 548 LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPM 607
+DTRR+ +N +SGTSMSCPHV+G+VGLLKT HP WSP++I+SAIMTTA T+DNT P+
Sbjct: 543 QDFDTRRVLFNSVSGTSMSCPHVSGIVGLLKTLHPTWSPASIKSAIMTTAMTQDNTMEPI 602
Query: 608 RDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYE 667
+ + KA+PFSYG+GHIRPN+AMDPGLVYDL+ +DYL+ LC++GYN+T I F YE
Sbjct: 603 LNANHTKASPFSYGAGHIRPNKAMDPGLVYDLTVNDYLNLLCALGYNETQISTFSDAPYE 662
Query: 668 C-SKSANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILA 726
C SK +L +FNYPSI+VP +GS+TLSR +KNVGSPS Y +R+P G+SVSVEPK L
Sbjct: 663 CPSKPISLANFNYPSITVPKFNGSITLSRTVKNVGSPSTYKLRIRKPTGVSVSVEPKKLE 722
Query: 727 FKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
FKK+GEEK+F VTLK K A D Y FGEL W+D KH+VRSPIVV
Sbjct: 723 FKKVGEEKAFTVTLKGKGKAAKD-YVFGELIWSDNKHHVRSPIVV 766
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 782 | ||||||
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.969 | 0.974 | 0.634 | 4.8e-268 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.942 | 0.954 | 0.567 | 3.3e-230 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.945 | 0.924 | 0.535 | 6.1e-213 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.952 | 0.977 | 0.502 | 8.4e-200 | |
| UNIPROTKB|Q0JK21 | 741 | Os01g0702300 "Os01g0702300 pro | 0.843 | 0.890 | 0.500 | 4.1e-175 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.897 | 0.927 | 0.441 | 2e-159 | |
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.801 | 0.792 | 0.452 | 5.6e-154 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.896 | 0.902 | 0.426 | 4.5e-153 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.911 | 0.918 | 0.419 | 2e-150 | |
| UNIPROTKB|Q69P78 | 770 | OJ1344_B01.33 "Putative serine | 0.914 | 0.928 | 0.439 | 1.5e-147 |
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2578 (912.6 bits), Expect = 4.8e-268, P = 4.8e-268
Identities = 488/769 (63%), Positives = 575/769 (74%)
Query: 6 SKLSLFVLC--YTLISLFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLG 63
+K+SL L L++LF +P +FA+K+SY+VYLGSHAH P++++A LD V SH FL
Sbjct: 14 NKMSLQSLSSLLLLVTLFFSP-AFALKKSYIVYLGSHAHLPQISSAHLDGVAHSHRTFLA 72
Query: 64 SFLGSTEKARDAIFYSYQNHINGFXXXXXXXXXXXXXKHPDVVSIFPNKGKKLHTTRSWD 123
SF+GS E A++AIFYSY+ HINGF KHPDVVS+FPNKG+KLHTT SW+
Sbjct: 73 SFVGSHENAKEAIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLHTTHSWN 132
Query: 124 FMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNS 183
FMLL NGV+H SS W K +GED IIANLDTGVWPESKSFSDEGYG VP+RWKG C
Sbjct: 133 FMLLAKNGVVHKSSLWNKAGYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKD 192
Query: 184 TKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGV 243
V CNRKLIGARYFN+ Y AY + + ++ T RDH+GHG+HTLSTA GN VPG
Sbjct: 193 ----VPCNRKLIGARYFNKGYLAYTGLPS-NASYE-TCRDHDGHGSHTLSTAAGNFVPGA 246
Query: 244 NVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303
NVFG+GNGTA GGSPKARVAAYKVCWP V +CFDADIL + AI DGVDV+S S+GG
Sbjct: 247 NVFGIGNGTASGGSPKARVAAYKVCWPPVDGAECFDADILAAIEAAIEDGVDVLSASVGG 306
Query: 304 DPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNF 363
D DY +DG AIG+FHAVK+G+ VVCSA NSGP+ GTV+NV+PW+ITVGAS++DREFQ F
Sbjct: 307 DAGDYMSDGIAIGSFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAF 366
Query: 364 VELRNGQRFKGTSLSKSLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKIL 423
VEL+NGQ FKGTSLSK LP + Y LI+ LCK G+LD +KVKGKIL
Sbjct: 367 VELKNGQSFKGTSLSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKIL 426
Query: 424 VCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYI 483
VCLRGD ARVDKG QAA AGA GM+LCNDK+SGNEI +D H LPASQI YKDG + Y+
Sbjct: 427 VCLRGDNARVDKGMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYL 486
Query: 484 KSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXX 543
S+ +P GYI +P+ LN KP+PFMASFSS GPN ITP ILKPDITAPGVN
Sbjct: 487 SSTKDPKGYIKAPTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEAT 546
Query: 544 XXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
+L D RR P+N SGTSMSCPH++GVVGLLKT HP WSP+AIRSAIMTT+RTR+N
Sbjct: 547 GPTDLDSDNRRTPFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNR 606
Query: 604 ANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF- 662
PM D SFKKA PFSYGSGH++PN+A PGLVYDL+ DYLDFLC++GYN T ++ F
Sbjct: 607 RKPMVDESFKKANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAE 666
Query: 663 GTQYECSKSANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEP 722
QY C + ANL DFNYPSI+VP ++GS+T++RKLKNVG P+ Y A REPLG+ VSVEP
Sbjct: 667 DPQYTCRQGANLLDFNYPSITVPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEP 726
Query: 723 KILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
K L F K GE K F++TL+P P Y FGELTWTD HYVRSPIVV
Sbjct: 727 KQLTFNKTGEVKIFQMTLRPL-PVTPSGYVFGELTWTDSHHYVRSPIVV 774
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 422/743 (56%), Positives = 520/743 (69%)
Query: 32 SYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFXXXX 91
SYVVY G+H+H E+T +DRV ++H++FLGSF GS E+A DAIFYSY HINGF
Sbjct: 31 SYVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHINGFAAHL 90
Query: 92 XXXXXXXXXKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIA 151
KHP+VVS+FPNK KLHTTRSWDF+ LE+N + SSS W K RFGED IIA
Sbjct: 91 DHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLEHNSYVPSSSIWRKARFGEDTIIA 150
Query: 152 NLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQH 211
NLDTGVWPESKSF DEG GP+PSRWKG CQN CNRKLIGARYFN+ YAA V
Sbjct: 151 NLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFHCNRKLIGARYFNKGYAAAVGHL 210
Query: 212 NISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQ 271
N S + + RD +GHG+HTLSTA G+ VPGV++FG GNGTAKGGSP+ARVAAYKVCWP
Sbjct: 211 NSSFD---SPRDLDGHGSHTLSTAAGDFVPGVSIFGQGNGTAKGGSPRARVAAYKVCWPP 267
Query: 272 VSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSA 331
V +C+DAD+L FD AIHDG DVISVSLGG+P +FND AIG+FHA K IVVVCSA
Sbjct: 268 VKGNECYDADVLAAFDAAIHDGADVISVSLGGEPTSFFNDSVAIGSFHAAKKRIVVVCSA 327
Query: 332 ANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKS-LPNDTFYPLI 390
NSGP TV+NV+PW ITVGAST+DREF + + L NG+ +KG SLS + LP+ FYP++
Sbjct: 328 GNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGNGKHYKGQSLSSTALPHAKFYPIM 387
Query: 391 TGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450
+ LCK G+LD K KGKILVCLRG RV+KGR A+ G +GM+L
Sbjct: 388 ASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLRGQNGRVEKGRAVALGGGIGMVLE 447
Query: 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510
N +GN++ ADPH LPA+Q+T KD V YI + P+ +IT T L KP+P MAS
Sbjct: 448 NTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTKKPIAHITPSRTDLGLKPAPVMAS 507
Query: 511 FSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHV 570
FSS GP+ + P+ILKPDITAPGV+ +D RR+ +N +SGTSMSCPH+
Sbjct: 508 FSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTNEQFDPRRLLFNAISGTSMSCPHI 567
Query: 571 AGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRA 630
+G+ GLLKT +P WSP+AIRSAIMTTA D+ P+++ + KATPFS+G+GH++PN A
Sbjct: 568 SGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPIQNATNMKATPFSFGAGHVQPNLA 627
Query: 631 MDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSK-SANLEDFNYPSISVPMISG 689
++PGLVYDL DYL+FLCS+GYN + I F G + CS +L + NYPSI+VP ++
Sbjct: 628 VNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGNNFTCSSPKISLVNLNYPSITVPNLTS 687
Query: 690 S-VTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAP 748
S VT+SR +KNVG PS Y V P G+ V+V+P L F K+GE+K+FKV L
Sbjct: 688 SKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKVILVKSKGNVA 747
Query: 749 DNYRFGELTWTDGKHYVRSPIVV 771
Y FGEL W+D KH VRSPIVV
Sbjct: 748 KGYVFGELVWSDKKHRVRSPIVV 770
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2058 (729.5 bits), Expect = 6.1e-213, P = 6.1e-213
Identities = 406/758 (53%), Positives = 500/758 (65%)
Query: 30 KQSYVVYLGSHAHGPEV---TTADLD------RVTDSHHEFLGSFLGSTEKARDAIFYSY 80
KQSYVVYLG HAHG + AD+D + DSH E L LG EKAR+AIFYSY
Sbjct: 37 KQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAREAIFYSY 96
Query: 81 QNHINGFXXXXXXXXXXXXXKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWG 140
HINGF + P VVS+FPN+G KLHTTRSW F+ L G + +AW
Sbjct: 97 TRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHKLHTTRSWQFLGLAGVGGAPTGAAWK 156
Query: 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYF 200
K RFGED II NLDTGVWPES+SF D+G GP+PS W+G CQ + CNRKLIGAR+F
Sbjct: 157 KARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQDDAFSCNRKLIGARFF 216
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKA 260
N+ YA+ V N++ + +T RD +GHGTHTLSTAGG V G +VFG GNGTA GGSP A
Sbjct: 217 NKGYASAVG--NLNTSLFDTPRDTDGHGTHTLSTAGGAPVAGASVFGYGNGTASGGSPMA 274
Query: 261 RVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHA 320
RVAAY+VC+ V+ +CFDADIL FD AIHDGV V+SVSLGGD DYF DG AIG+FHA
Sbjct: 275 RVAAYRVCYTPVNGSECFDADILAAFDAAIHDGVHVLSVSLGGDAGDYFADGLAIGSFHA 334
Query: 321 VKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKS 380
V+HGI VVCSA NSGP GTV+NV+PW+ T AST+DREF +V N + KG SLS S
Sbjct: 335 VRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDREFPAYVVF-NDTKLKGQSLSAS 393
Query: 381 L--PNDTFYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGRQ 438
P + +P+I LC G+LD EKVKGKI+VCLRG RV+KG
Sbjct: 394 ALSPASSSFPMIDSSLAASPNRTQNESQLCFLGSLDPEKVKGKIVVCLRGVNPRVEKGEA 453
Query: 439 AAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPST 498
AG GM+L ND ++GNEI AD H LPA+ I + DG + Y+K++ +P G IT P T
Sbjct: 454 VLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSDGQILFSYLKNTKSPAGTITRPET 513
Query: 499 YLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYN 558
L KP+PFMA+FSS GPN +TP ILKPDITAPGV+ +L +D RR+ +N
Sbjct: 514 RLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSVVAAWTRASAPTDLAFDKRRVAFN 573
Query: 559 IMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPF 618
SGTSMSCPHVAGVVGLL+T PDWSP+AIRSA+MTTA DN + + + SF A PF
Sbjct: 574 SESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMTTAVEVDNERHAILNSSFAAANPF 633
Query: 619 SYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFG----TQYECSKSA-N 673
+G+GH+ P RAM+PGLVYDL+ DYL+FLCS+ YN T + F G + C S
Sbjct: 634 GFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNATVMAMFAGGGGAAPFRCPASPPK 693
Query: 674 LEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKIGEE 733
++D NYPSI+V ++ S T+ R +KNVG P Y A V P G+ V+V P L F GE+
Sbjct: 694 VQDLNYPSITVVNLTSSATVRRTVKNVGKPGVYKAYVTSPAGVRVTVSPDTLPFLLKGEK 753
Query: 734 KSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVV 771
K+F+V + + +Y FG L WT+GK +VRSP+VV
Sbjct: 754 KTFQVRFEVTNASLAMDYSFGALVWTNGKQFVRSPLVV 791
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1934 (685.9 bits), Expect = 8.4e-200, P = 8.4e-200
Identities = 383/762 (50%), Positives = 487/762 (63%)
Query: 20 LFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYS 79
LF A Y+VYLGSH +GP+ + + R T SHH+ LGS LGS + A+DAI YS
Sbjct: 6 LFLAAALLETNWPYIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYS 65
Query: 80 YQNHINGFXXXXXXXXXXXXXKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAW 139
Y +INGF +HPDVV++ + KLHTTRSWDFM +E +G I S W
Sbjct: 66 YTKNINGFAAHLEEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIW 125
Query: 140 GKGRFGEDIIIANLDTGVWPESKSFSDEGY-GPVPSRWKGTCQNSTKEGVRCNRKLIGAR 198
GRFG+D+IIANLD+GVWPES SF+DE G VP RWKG+C ++ K GV CN+KLIGAR
Sbjct: 126 KHGRFGQDVIIANLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGAR 185
Query: 199 YFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSP 258
YFN+ N N +RD EGHGTHTLSTAGG VP ++FG NGTAKGG+P
Sbjct: 186 YFNKDMLL----SNPGAVDGNWSRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAP 241
Query: 259 KARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD-P----ADYFNDGT 313
+ARVAAYKVCW G+C AD+L GF+ AIHDG DVISVS G D P A + +
Sbjct: 242 RARVAAYKVCW----SGECAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPV 297
Query: 314 AIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFK 373
+G+ HA +G+ VVCSA NSGP TV N +PW+ TV AST+DR+F N V L N
Sbjct: 298 TLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMT 357
Query: 374 GTSLSKSLPNDT-FYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRG-DTA 431
G SL + + T Y +I S C G LD EKVK KI+VC+RG D
Sbjct: 358 GMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDIP 417
Query: 432 RVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMG 491
RV KG AG GMIL N + G++I ADPH LPA+ ITY + + + Y+ SS NP+
Sbjct: 418 RVTKGMTVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVA 477
Query: 492 YITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYD 551
I+ T + K SP +A+FSS GP+ P +LKPDI APGV+ E+P D
Sbjct: 478 NISPSKTEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPND 537
Query: 552 TRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGS 611
RR Y I+SGTSM+CPH++GV+GLLK A P+WSP+A+RSAIMTTART+DNT PMRD
Sbjct: 538 ERRSEYAILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDHD 597
Query: 612 FKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYEC-SK 670
++AT F++G+G+I PNRA+DPGLVYDLS++DY FLCS+G+N + + + + C K
Sbjct: 598 GREATAFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPEK 657
Query: 671 SANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSVEPKILAFKKI 730
+ED NYPSI VP + + T++R+LK VG P+ Y A+ R P G++++VEP L F K
Sbjct: 658 VPPMEDLNYPSIVVPALRHTSTVARRLKCVGRPATYRATWRAPYGVNMTVEPAALEFGKD 717
Query: 731 GEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIVVN 772
GE K FKVT K + Y FG L W+DG H+VRSP+VVN
Sbjct: 718 GEVKEFKVTFKSEKDKLGKGYVFGRLVWSDGTHHVRSPVVVN 759
|
|
| UNIPROTKB|Q0JK21 Os01g0702300 "Os01g0702300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
Identities = 347/693 (50%), Positives = 455/693 (65%)
Query: 103 PDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAW-GKGRFGEDIIIANLDTGVWPES 161
P V+++ P+ K+HTTRSWDF+ LE NG ++ AW ++G D II N+DTGVWPES
Sbjct: 51 PGVLAVIPDVLHKVHTTRSWDFLELERNGA--ATGAWKDAAKYGVDAIIGNVDTGVWPES 108
Query: 162 KSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAA----YVKQHNISVNF 217
SF D+GY VPSRW+G C +CN KLIGA +FN + A K + +
Sbjct: 109 ASFKDDGYS-VPSRWRGKCITGNDTTFKCNNKLIGAGFFNLGFLASGLLQGKPPSQAAEL 167
Query: 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQC 277
T RD+ GHGTHTLSTAGG VP +VFG G GTAKGGSP ARVAAYK C+ ++G C
Sbjct: 168 Y-TPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAAYKACY---AEG-C 222
Query: 278 FDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPE 337
+DIL A+ DGV+V+S+S+GG DY +D AIGAF+AV+ G++VVCSA+NSGP+
Sbjct: 223 SSSDILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFYAVQKGVIVVCSASNSGPQ 282
Query: 338 LGTVTNVSPWIITVGASTLDREFQNFVE---LRNGQRFKGTSLSKS-LPNDTFYPLITGL 393
G+VTNV+PWI+TVGAST+DR+F +V + + KG SLS S LP Y +I
Sbjct: 283 PGSVTNVAPWILTVGASTMDRDFPAYVTFGGVTSSMTIKGQSLSNSTLPQGQRYAMINAK 342
Query: 394 QXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDK 453
+LC G+LD +KV+GKI+VC RG ARV+KG AG VGM+LCN
Sbjct: 343 NANAANVPSENSTLCFPGSLDSDKVRGKIVVCTRGVNARVEKGLVVKQAGGVGMVLCNYA 402
Query: 454 SSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSS 513
+G ++ ADPH + A+ ++Y + + +Y+ S+DNP+GYIT+ L KP+P MA+FSS
Sbjct: 403 GNGEDVIADPHLIAAAHVSYSQCINLFNYLGSTDNPVGYITASDARLGVKPAPVMAAFSS 462
Query: 514 AGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGV 573
GPN ITP+ILKPDITAPGV+ EL +D RR+PYNIMSGTSMSCPHV+G+
Sbjct: 463 RGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRVPYNIMSGTSMSCPHVSGI 522
Query: 574 VGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633
VGL+KT +PDW+P+ I+SAIMTTA T DN + +RD + ATPF+YGSGH+R +A+DP
Sbjct: 523 VGLIKTKYPDWTPAMIKSAIMTTAITGDNDSGKIRDETGAAATPFAYGSGHVRSVQALDP 582
Query: 634 GLVYDLSEDDYLDFLCSIGYNQTTIKR-FFGTQYE---CSKSANL---EDFNYPSISVPM 686
GLVYD + DY DFLC++ Q + FG + CS+ A ED NYPSI+VP
Sbjct: 583 GLVYDTTSADYADFLCALRPTQNPLPLPVFGDDGKPRACSQGAQYGRPEDLNYPSIAVPC 642
Query: 687 ISGSVTLSRKLKNVGS-PSNYAASVREPL-GISVSVEPKILAFKKIGEEKSFKVTLKPKW 744
+SGS T+ R++KNVG+ P YA SV E L G+ V+V P L+F+ GEE+ F V L+ +
Sbjct: 643 LSGSATVRRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFESYGEEREFTVRLEVQD 702
Query: 745 SGAPDNYRFGELTWT-------DGKHYVRSPIV 770
+ A NY FG + W+ D KH VRSPIV
Sbjct: 703 AAAAANYVFGSIEWSEESESDPDRKHRVRSPIV 735
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 320/725 (44%), Positives = 436/725 (60%)
Query: 56 DSHHEFLGSFLGSTEKARDAIFYSYQNHINGFXXXXXXXXXXXXXKHPDVVSIFPNKGKK 115
D H + S L S + + + Y+Y+N I+GF P V+S+ P +
Sbjct: 46 DLHSNWYDSSLRSISDSAE-LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYE 104
Query: 116 LHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSR 175
LHTTR+ F+ L+ H++ + + D+++ LDTGVWPESKS+SDEG+GP+PS
Sbjct: 105 LHTTRTPLFLGLDE----HTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSS 160
Query: 176 WKGTCQNSTK-EGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLST 234
WKG C+ T CNRKLIGAR+F R Y + + + S + + RD +GHGTHT ST
Sbjct: 161 WKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKE-SRSPRDDDGHGTHTSST 219
Query: 235 AGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294
A G++V G ++ G +GTA+G +P+ARVA YKVCW G CF +DIL D AI D V
Sbjct: 220 AAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWL----GGCFSSDILAAIDKAIADNV 275
Query: 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGAS 354
+V+S+SLGG +DY+ DG AIGAF A++ GI+V CSA N+GP +++NV+PWI TVGA
Sbjct: 276 NVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAG 335
Query: 355 TLDREFQNFVELRNGQRFKGTSLSK--SLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGA 412
TLDR+F L NG+ F G SL K +LP D P I +LC G
Sbjct: 336 TLDRDFPALAILGNGKNFTGVSLFKGEALP-DKLLPFI----YAGNASNATNGNLCMTGT 390
Query: 413 LDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQIT 472
L EKVKGKI++C RG ARV KG AG VGMIL N ++G E+ AD H LPA+ +
Sbjct: 391 LIPEKVKGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVG 450
Query: 473 YKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPG 532
K G + Y+ + NP I+ T + KPSP +A+FSS GPN ITP ILKPD+ APG
Sbjct: 451 EKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPG 510
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN L D+RR+ +NI+SGTSMSCPHV+G+ LLK+ HP+WSP+AIRSA
Sbjct: 511 VNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSA 570
Query: 593 IMTTARTRDNTANPMRD-GSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSI 651
+MTTA P+ D + K +TPF +G+GH+ P A +PGL+YDL+ +DYL FLC++
Sbjct: 571 LMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCAL 630
Query: 652 GYNQTTIKRFFGTQYEC--SKSANLEDFNYPSISVPMIS-GSVTLSRKLKNVGSPSNYAA 708
Y I+ Y C SKS ++ D NYPS +V + G+ +R + +VG Y+
Sbjct: 631 NYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVDGVGAYKYTRTVTSVGGAGTYSV 690
Query: 709 SVR-EPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRS 767
V E G+ +SVEP +L FK+ E+KS+ VT S + FG + W+DGKH V S
Sbjct: 691 KVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGS 750
Query: 768 PIVVN 772
P+ ++
Sbjct: 751 PVAIS 755
|
|
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1357 (482.7 bits), Expect = 5.6e-154, Sum P(2) = 5.6e-154
Identities = 295/652 (45%), Positives = 387/652 (59%)
Query: 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNRKLIGARY 199
K + G+ II+ LD+GVWPESKSF+D+G GPVP WKG CQ CNRK+IGARY
Sbjct: 147 KAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSHCNRKIIGARY 206
Query: 200 FNRAYAAYVKQHNISVNFNNTA-RDHEGHGTHTLSTAGGNLVPGVNVFG-MGNGTAKGGS 257
+ + Y Y N + N + + RD +GHG+HT STA G V G + G G+A GG+
Sbjct: 207 YVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGGFAKGSASGGA 266
Query: 258 PKARVAAYKVCW--PQVS--DGQ-CFDADILKGFDMAIHDGVDVISVSLGG-DPADYFND 311
P AR+A YK CW P +G C + D+L D AI DGV VIS+S+G +P + D
Sbjct: 267 PLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIGTTEPFPFTQD 326
Query: 312 GTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQR 371
G A+GA HAVK IVV SA NSGP+ GT++N++PWIITVGASTLDR F + L NG
Sbjct: 327 GIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFVGGLVLGNGYT 386
Query: 372 FKGTSLSKSLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTA 431
K S++ + D F PL+ S C +L E V GK+++CLRG +
Sbjct: 387 IKTDSIT-AFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKVVLCLRGAGS 445
Query: 432 RVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMG 491
R+ KG + AG GMIL N ++GNE+ +D HF+P + +T K+L+YIK+ NP
Sbjct: 446 RIGKGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEYIKTDKNPKA 505
Query: 492 YITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYD 551
+I T + +P M FSS GPN + P ILKPDITAPG+ ++ D
Sbjct: 506 FIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGADSPSKMSVD 565
Query: 552 TRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGS 611
R YNI SGTSMSCPHVAG + LLK HP WS +AIRSA+MTTA ++ P++D +
Sbjct: 566 QRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTNDKKKPIQDTT 625
Query: 612 FKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYEC-SK 670
A PF+ GSGH RP +A DPGLVYD S YL + CS+ N T I F +C SK
Sbjct: 626 GLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSV--NITNIDPTF----KCPSK 679
Query: 671 SANLEDFNYPSISVPMISGSVTLSRKLKNVG---SPSNYAASVREPLGISVSVEPKILAF 727
+ NYPSI+VP + +VT+ R + NVG S S Y SV+ P GISV P IL+F
Sbjct: 680 IPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNILSF 739
Query: 728 KKIGEEKSFKVTLKP---KWSGAPDN--YRFGELTWTDGKHYVRSPIVVNQA 774
+IG+++ FK+ +KP + A + Y+FG +WTD H VRSPI V+ A
Sbjct: 740 NRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
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| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
Identities = 318/746 (42%), Positives = 434/746 (58%)
Query: 58 HHEFLGSFLGSTEKARDAIFYSYQNHINGFXXXXXXXXXXXXXKHPDVVSIFPNKGKKLH 117
H L S S + A + YSY ++GF +HP V+S+ P++ +++H
Sbjct: 53 HVSLLRSLPSSPQPA--TLLYSYSRAVHGFSARLSPIQTAALRRHPSVISVIPDQAREIH 110
Query: 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177
TT + F+ G +S W +GED+I+ LDTG+WPE SFSD G GP+PS WK
Sbjct: 111 TTHTPAFL-----GFSQNSGLWSNSNYGEDVIVGVLDTGIWPEHPSFSDSGLGPIPSTWK 165
Query: 178 GTCQNSTK-EGVRCNRKLIGARYFNRAYAAY---VKQHNISVNFNNTARDHEGHGTHTLS 233
G C+ CNRKLIGAR F R Y K+H + + + RD EGHGTHT S
Sbjct: 166 GECEIGPDFPASSCNRKLIGARAFYRGYLTQRNGTKKH--AAKESRSPRDTEGHGTHTAS 223
Query: 234 TAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDG 293
TA G++V +++ GTA G + KAR+AAYK+CW G C+D+DIL D A+ DG
Sbjct: 224 TAAGSVVANASLYQYARGTATGMASKARIAAYKICWT----GGCYDSDILAAMDQAVADG 279
Query: 294 VDVISVSLG--GDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITV 351
V VIS+S+G G +Y D AIGAF A +HGIVV CSA NSGP T TN++PWI+TV
Sbjct: 280 VHVISLSVGASGSAPEYHTDSIAIGAFGATRHGIVVSCSAGNSGPNPETATNIAPWILTV 339
Query: 352 GASTLDREFQNFVELRNGQRFKGTSL--SKSLPNDTFYPLITGLQXXXXXXXXXXXSLCK 409
GAST+DREF +G+ F GTSL +SLP+ + +G LC
Sbjct: 340 GASTVDREFAANAITGDGKVFTGTSLYAGESLPDSQLSLVYSG---------DCGSRLCY 390
Query: 410 NGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPAS 469
G L+ V+GKI++C RG ARV+KG +AG GMIL N SG E+TAD H +PA+
Sbjct: 391 PGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGGAGMILANTAESGEELTADSHLVPAT 450
Query: 470 QITYKDGVKVLDYIKSSDNPMGYITSPSTYLN-AKPSPFMASFSSAGPNKITPEILKPDI 528
+ K G ++ DYIK+SD+P I+ T + + PSP +A+FSS GPN +TP ILKPD+
Sbjct: 451 MVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPDV 510
Query: 529 TAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSA 588
APGVN +L D RR+ +NI+SGTSMSCPHV+G+ LL+ AHPDWSP+A
Sbjct: 511 IAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGTSMSCPHVSGLAALLRKAHPDWSPAA 570
Query: 589 IRSAIMTTARTRDNTANPMRD-GSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDF 647
I+SA++TTA +N+ P+ D + K + F +G+GH+ PN+A++PGLVYD+ +Y+ F
Sbjct: 571 IKSALVTTAYDVENSGEPIEDLATGKSSNSFIHGAGHVDPNKALNPGLVYDIEVKEYVAF 630
Query: 648 LCSIGYNQTTIKRFFG--TQYECSKSANLE---DFNYPSISVPMIS-GSVT-LSRKLKNV 700
LC++GY I F T Y+ +++ L D NYPS SV S G V R +KNV
Sbjct: 631 LCAVGYEFPGILVFLQDPTLYDACETSKLRTAGDLNYPSFSVVFASTGEVVKYKRVVKNV 690
Query: 701 GSPSN--YAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPK----WSGAPDNYRFG 754
GS + Y V+ P + + V P LAF K ++VT K G+ + FG
Sbjct: 691 GSNVDAVYEVGVKSPANVEIDVSPSKLAFSKEKSVLEYEVTFKSVVLGGGVGSVPGHEFG 750
Query: 755 ELTWTDGKHYVRSPIVVNQAQAEAES 780
+ WTDG+H V+SP+ V Q +S
Sbjct: 751 SIEWTDGEHVVKSPVAVQWGQGSVQS 776
|
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| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 314/748 (41%), Positives = 434/748 (58%)
Query: 45 EVTTADLDRVTDSHHEFLGSFLGSTEKAR------DA---IFYSYQNHINGFXXXXXXXX 95
++ +++ D +HE+ S + S ++ DA I Y+Y+ +GF
Sbjct: 37 QMAASEMPSSFDFYHEWYASTVKSVSSSQLEDEEDDASTRIIYNYETAFHGFAAQLDEEE 96
Query: 96 XXXXXKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDT 155
+ V+++ P +LHTTRS DF+ + G S+ W D+++ LDT
Sbjct: 97 AELMAEADGVLAVIPETVLQLHTTRSPDFLGI---GPEVSNRIWSDSLADHDVVVGVLDT 153
Query: 156 GVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNRKLIGARYFNRAYAAYVKQHNIS 214
G+WPES SFSD+G GPVP++WKG CQ CNRK++GAR F Y A N +
Sbjct: 154 GIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCNRKIVGARIFYNGYEASSGPINET 213
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
+ RD +GHGTHT +TA G+ V N++G G A+G +P+ARVAAYKVCW
Sbjct: 214 TELKSP-RDQDGHGTHTAATAAGSPVQDANLYGYAGGVARGMAPRARVAAYKVCWA---- 268
Query: 275 GQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANS 334
G CF +DIL D A+ DGVDV+S+SLGG + Y+ D +I +F A++ G+ V CSA N+
Sbjct: 269 GGCFSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAMQMGVFVACSAGNA 328
Query: 335 GPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPN---DTFYPLIT 391
GP+ ++TN+SPWI TVGAST+DR+F V L NG G SL K L N YP++
Sbjct: 329 GPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSLYKGLRNLSPQEQYPVV- 387
Query: 392 GLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451
SLC G L V GKI++C RG + RV KG+ AG +GMIL N
Sbjct: 388 --YLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKGQVVKEAGGIGMILAN 445
Query: 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASF 511
++G E+ AD H LPA + +G+ Y KS+ P ++ T L +PSP +A+F
Sbjct: 446 TAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTATLSFGGTKLGIRPSPVVAAF 505
Query: 512 SSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVA 571
SS GPN +T EILKPD+ APGVN L D+RR+ +NI+SGTSMSCPHVA
Sbjct: 506 SSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVGFNILSGTSMSCPHVA 565
Query: 572 GVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKA-TPFSYGSGHIRPNRA 630
GV L+K +HPDWSP+ I+SA+MTTA DNT PM+D + KA TPF +G+GHI P RA
Sbjct: 566 GVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKASTPFEHGAGHIHPVRA 625
Query: 631 MDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFF-GTQYECSKS-ANLEDFNYPSISVPMI- 687
+ PGLVYD+ + DYL+FLC+ ++ F + C + ++ D NYP+ISV
Sbjct: 626 LTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFSSASDLNYPAISVVFAD 685
Query: 688 --SGSVTLSRKLKNVGSPSN-YAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744
S ++T+ R + NVG PS+ Y V + G V VEP L F ++ S+KVT+ K
Sbjct: 686 QPSKALTVRRTVTNVGPPSSTYHVKVTKFKGADVIVEPNTLHFVSTNQKLSYKVTVTTKA 745
Query: 745 SG-APDNYRFGELTWTDGKHYVRSPIVV 771
+ AP+ FG L+W+DG H VRSP+V+
Sbjct: 746 AQKAPE---FGALSWSDGVHIVRSPVVL 770
|
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| UNIPROTKB|Q69P78 OJ1344_B01.33 "Putative serine protease" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
Identities = 332/756 (43%), Positives = 431/756 (57%)
Query: 32 SYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHI-NGFXXX 90
+Y+VYL P + A HH L S S + +R + YSY + + F
Sbjct: 32 TYIVYLN-----PALKPAPYATHLHWHHAHLASL--SVDPSRH-LLYSYTSAAPSAFAAR 83
Query: 91 XXXXXXXXXXKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIII 150
HP V S+ + LHTTRS F+ L + A D+II
Sbjct: 84 LLPSHVAALRGHPAVASVHEDVILPLHTTRSPLFLHLPPYDAPDADGA------STDVII 137
Query: 151 ANLDTGVWPESKSFSDEGYGPVPSRWKGTCQ-NSTK-EGVRCNRKLIGARYFNRAYAAYV 208
LDTGVWPES SF D G GPVPSRW+G+C+ N+T CNRKLIGAR F R Y A
Sbjct: 138 GVLDTGVWPESPSFGDVGMGPVPSRWRGSCETNATDFPSSMCNRKLIGARAFFRGYGAGG 197
Query: 209 KQH--NISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYK 266
+ ++S+ F++ RDH+GHGTHT STA G +V + G GTA+G +P ARVAAYK
Sbjct: 198 GGNGSHVSLEFSSP-RDHDGHGTHTASTAAGAVVADAGLLGYAEGTARGMAPGARVAAYK 256
Query: 267 VCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIV 326
VCW Q G CF +DIL G + AI DGVDV+S+SLGG D A+GA A + GIV
Sbjct: 257 VCWRQ---G-CFSSDILAGMEKAIDDGVDVLSLSLGGGAFPLSRDPIAVGALAATRRGIV 312
Query: 327 VVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSL-SKSLPNDT 385
V CSA NSGP ++ N +PW+ITVGA TLDR F + EL NG+ G SL S D
Sbjct: 313 VACSAGNSGPSPSSLVNTAPWVITVGAGTLDRNFPAYAELGNGETHAGMSLYSGDGLGDE 372
Query: 386 FYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAV 445
P++ LC G LD VKGK+++C RG +RV+KG AG V
Sbjct: 373 KLPVVYN---KGIRAGSNASKLCMEGTLDAAAVKGKVVLCDRGGNSRVEKGLVVKQAGGV 429
Query: 446 GMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKS-SDNPMGYITSPSTYLNAKP 504
GM+L N SG E+ AD H LPA + K G + Y++S +D +G +T T L+ +P
Sbjct: 430 GMVLANTAQSGEEVVADSHLLPAVAVGAKSGDAIRRYVESDADAEVG-LTFAGTALDVRP 488
Query: 505 SPFMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTS 564
+P +A+FSS GPN+ ++LKPD+ PGVN L D RR P+NI+SGTS
Sbjct: 489 APVVAAFSSRGPNRQVAQLLKPDVIGPGVNILAGWTGSVGPTGLTVDERRSPFNILSGTS 548
Query: 565 MSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDG-SFKKATPFSYGSG 623
MSCPH++G+ +K AHPDWSPSAI+SA+MTTA T DNT +P+ D S ATP+S G+G
Sbjct: 549 MSCPHISGLAAFVKAAHPDWSPSAIKSALMTTAYTVDNTGSPIVDAASNTTATPWSIGAG 608
Query: 624 HIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGT-QYECS-KSANLEDFNYPS 681
H+ P +A+ PGLVYD S DDY+ FLCS+G + ++ C K ++ D NYPS
Sbjct: 609 HVDPVKALSPGLVYDTSVDDYVAFLCSVGTSPPQVQAITAAPNVTCQRKLSSPGDLNYPS 668
Query: 682 ISVPM-----ISGSVTLS--RKLKNVGSP-SNYAASVREPLGISVSVEPKILAFKKIGEE 733
SV S S T+ R+L NVG S Y A V P I+V+V+P LAFKK G++
Sbjct: 669 FSVVFGRRSSSSRSTTVKYRRELTNVGDGRSVYTARVTGPSDIAVAVKPARLAFKKAGDK 728
Query: 734 KSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPI 769
+ VT K G P + FG LTW++G+H VRSPI
Sbjct: 729 LRYTVTFKSTTPGGPTDAAFGWLTWSNGEHDVRSPI 764
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pm.C_LG_VI000008 | hypothetical protein (772 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 782 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-110 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 9e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-34 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 6e-26 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-25 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 3e-19 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 8e-19 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-18 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 9e-18 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 6e-15 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 9e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-14 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-13 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 9e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 1e-10 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 3e-10 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 8e-10 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 9e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-09 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 1e-09 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 5e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-09 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-08 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-08 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-08 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 5e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 5e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 6e-07 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 1e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-06 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-06 | |
| cd02126 | 126 | cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as | 4e-06 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 5e-06 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-05 | |
| cd02129 | 120 | cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-as | 1e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 2e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 4e-04 | |
| cd04816 | 122 | cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease- | 6e-04 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 6e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 8e-04 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 8e-04 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 0.001 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-110
Identities = 125/244 (51%), Positives = 144/244 (59%), Gaps = 9/244 (3%)
Query: 114 KKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVP 173
+LHTTRS DF+ L S G GE III LDTG+WPE SF+D G GP P
Sbjct: 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYP 57
Query: 174 SRWKGTCQNSTKE-GVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTL 232
W G C CN KLIGARYF+ Y AY S + RD++GHGTHT
Sbjct: 58 HTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGF--NSDGEYRSPRDYDGHGTHTA 115
Query: 233 STAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292
STA GN+V +V G GTA G +P+AR+A YKVCWP DG CF +DIL D AI D
Sbjct: 116 STAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWP---DGGCFGSDILAAIDQAIAD 172
Query: 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVG 352
GVDVIS S+GG D + D AI HAV+ GI V SA NSGP TV NV+PW+ TV
Sbjct: 173 GVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232
Query: 353 ASTL 356
ASTL
Sbjct: 233 ASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 9e-35
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Query: 364 VELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423
V L NG+ G SL N YPL+ K+AN+ D ASLC G+LD KVKGKI+
Sbjct: 2 VTLGNGKTIVGQSLYP--GNLKTYPLV----YKSANSGDVDASLCLPGSLDPSKVKGKIV 55
Query: 424 VCLRGD-TARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDY 482
+C RG T+RV KG AG GMIL ND + G ++ AD H LPA + Y+DG +L Y
Sbjct: 56 LCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSY 115
Query: 483 IKSSDNPMGYI 493
I S+ NP I
Sbjct: 116 INSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 3e-34
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 524 LKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD 583
LKPDI APGV+I+AA+T P D R + +SGTSM+ PHVAGV LLK+AHPD
Sbjct: 236 LKPDIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 584 WSPSAIRSAIMTTA 597
WSP+AI+SA+MTTA
Sbjct: 293 WSPAAIKSALMTTA 306
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 497 STYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP 556
ST + + + SS GP +KPDI APGV+I++ G+
Sbjct: 181 STVADVAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPGSGTG----------- 228
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKAT 616
Y MSGTSM+ PHVAG LLK AHPDWSP+ I++A+M TA+ ++
Sbjct: 229 YARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYP 281
Query: 617 PFSYGSGHIRPNRA 630
G+G + RA
Sbjct: 282 VSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 68/213 (31%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
G+ + +A +DTG+ G+ + KG G + + Y
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPN--DKVKG-----------------GYDFVDDDY 41
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
+ S + +A D GHGTH GN G+ GT KG +PKA + A
Sbjct: 42 DPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLYA 93
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHG 324
YKV P G I+ + A+ DG+DVI++SL G + +D AI +AVK G
Sbjct: 94 YKVLGP---GGSGTTDVIIAAIEQAVDDGMDVINLSL-GSSVNGPDDPDAIAINNAVKAG 149
Query: 325 IVVVCSAANSGPELGTV--TNVSPWIITVGAST 355
+VVV +A NSGP T+ +P ITVGAST
Sbjct: 150 VVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 61/218 (27%), Positives = 81/218 (37%), Gaps = 54/218 (24%)
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
G+ I +A LDTG+ F R + A + N
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD-------------------------GRIIRFADFVNT-- 33
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
VN T D GHGTH G+ NG KG +P A +
Sbjct: 34 ----------VNGRTTPYDDNGHGTHVAGIIAGSGR-------ASNGKYKGVAPGANLVG 76
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAI----HDGVDVISVSLGGDP-ADYFNDGTAIGAFH 319
KV G ++DI+ G D + + V+++SLG P Y D
Sbjct: 77 VKVLDD---SGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVER 133
Query: 320 AVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGAST 355
GIVVV +A NSGP GT+T+ SP +ITVGA
Sbjct: 134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVD 171
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 493 ITSPSTYLNAKPSPFMASFSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAIGATELPYD 551
IT + N ++ FSS GP T + +KPD+ APG NI++
Sbjct: 165 ITVGAVDDNGPHDDGISYFSSRGP---TGDGRIKPDVVAPGENIVSC---RSPGGNPGAG 218
Query: 552 TRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598
Y MSGTSM+ PHV+G + LL A+P +P ++ + TA
Sbjct: 219 VGS-GYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 513 SAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAG 572
+ P+ E KPD+ APGV++ +A GA G + Y +SGTSM+ PHVAG
Sbjct: 178 VSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQ---------YTRLSGTSMAAPHVAG 228
Query: 573 VVGLLKTAHPDWSPSAIRSAIMTTAR 598
V LL AHPD SP I+ A+ TA
Sbjct: 229 VAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 9e-18
Identities = 56/215 (26%), Positives = 73/215 (33%), Gaps = 52/215 (24%)
Query: 148 IIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAY 207
+ +A +DTGV P+ G +N
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENG------------------------ 36
Query: 208 VKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKV 267
D GHGTH + NG G +P A++ KV
Sbjct: 37 ----------PTDPDDGNGHGTHVAGIIAAS---------ANNGGGVGVAPGAKLIPVKV 77
Query: 268 CWPQVSDGQCFDADILKGFDMAIHD-GVDVISVSLGG-DPADYFNDGTAIGAFHAVKHGI 325
DG +DI D A D G DVI++SLGG AI A K G+
Sbjct: 78 LD---GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALA-KLGV 133
Query: 326 VVVCSAANSGPELGTVTN---VSPWIITVGASTLD 357
+VV +A N GP+ GT SP +I VGA D
Sbjct: 134 LVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 507 FMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMS 566
+A FS+ G KPDI APG NI+++ Y+ SGTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSS----------GPGGDLGGYDSHSGTSMA 222
Query: 567 CPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
P VAG LL +A+P +P +R+ ++TTA +
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSM 259
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 9e-15
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 32 SYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATL 91
+Y+V V SH + S A I YSY++ NGFAA L
Sbjct: 1 TYIVKFKDGVSKAAVF--------SSHKSWHASSKEEAAGAS--ILYSYKHGFNGFAAKL 50
Query: 92 EEEEAAEIAKHPDVVSIFPNKGKKLH 117
EEEA ++ KHPDV + P++ +LH
Sbjct: 51 TEEEAEKLRKHPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP ++ APGV+I++ + P + Y +SGTSM+ P
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY---------PNND----YAYLSGTSMATP 201
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
HVAGV L+ + P+ + + +R A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 20/95 (21%)
Query: 504 PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGT 563
+ +ASFS+ G + D+ APGV+I++ G Y MSGT
Sbjct: 185 SNDALASFSNYGKKTV-------DLAAPGVDILSTSPGG-------------GYGYMSGT 224
Query: 564 SMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598
SM+ PHVAG LL + +P+ + + I+ AI+++A
Sbjct: 225 SMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 24/127 (18%)
Query: 509 ASFSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ FSS GP T E LKPD+ APG NI++ + A G Y ++SGTSM+
Sbjct: 189 SYFSSWGP---TNELYLKPDVAAPGGNILSTYPLAGGG-----------YAVLSGTSMAT 234
Query: 568 PHVAGVVGLLKTA-HPDWSPSAIRSAIMTTARTRDNTANPMRDGS---FKKATPFSYGSG 623
P+VAG LL A H SP+ +R + +TA+ P DG+ A G+G
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTAKPL-----PWSDGTSALPDLAPVAQQGAG 289
Query: 624 HIRPNRA 630
+ +A
Sbjct: 290 LVNAYKA 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 7e-14
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 485 SSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544
+S+NP + S +ASFSS GP +KPD+ APG I++A +G G
Sbjct: 179 ASNNPSVSNGEGGLGQSDN-SDTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGG 235
Query: 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLL----------KTAHPDWSPSAIRSAIM 594
+ Y SGTSM+ P VAG LL +P S + +++ ++
Sbjct: 236 IGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLI 289
Query: 595 TTAR 598
+AR
Sbjct: 290 NSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 46/121 (38%), Positives = 57/121 (47%), Gaps = 33/121 (27%)
Query: 508 MASFSSAGPNKITPEI-LKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMS 566
M+ FSS GP TP++ LKPDITAPG NI + D Y MSGTSM+
Sbjct: 234 MSGFSSWGP---TPDLDLKPDITAPGGNIYSTV----------NDNT---YGYMSGTSMA 277
Query: 567 CPHVAGVVGL----LKTAHPDWSP----SAIRSAIMTTARTRDNTANPMRDGSFKKATPF 618
PHVAG L LK +P S +++ +M NTA P D K T +
Sbjct: 278 SPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLM-------NTATPPLDSEDTK-TYY 329
Query: 619 S 619
S
Sbjct: 330 S 330
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
Query: 525 KPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDW 584
DI APG +I+++ T G Y +SGTSM+ P VAGV LL +A+PD
Sbjct: 181 GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 585 SPSAIRSAIMTT 596
+P+ +++A+++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
D+ GHGTH G +P A++ + KV G
Sbjct: 39 TPDDDNNGHGTHVAGIIAAG--------DNNGSGGVGVAPNAKLESVKVL-----PGSGG 85
Query: 279 -DADILKGFDMAI--HDGVDVISVSLGG--DPADYFNDGTAIGAFH-AVKHGIVVVCSAA 332
D+++ + A + + VI++SLG P ++ A + A G + V +A
Sbjct: 86 TDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAG 145
Query: 333 NSGPELGTVTNVSP---W-IITVGASTLDRE 359
N G P IITVGA T +
Sbjct: 146 NGGDYADNNPVSDPASANNIITVGAVTENGT 176
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 19/90 (21%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFS+ G DI APGV+I++A+ G+ AT +SGTSM+
Sbjct: 183 RASFSNYGSCV--------DIFAPGVDILSAWIGSDTAT-----------ATLSGTSMAA 223
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
PHVAG+ L + PD SP+ +++ ++ A
Sbjct: 224 PHVAGLAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 38/133 (28%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 488 NPMGYITSPST--------YLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAF 539
+P +T P T N + +A FS GP +KPDI APGVNI+ A
Sbjct: 332 DPYTTLTIPGTARSVITVGAYNQNNNS-IAIFSGRGPT--RDGRIKPDIAAPGVNILTAS 388
Query: 540 TGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLL------KTAHPDWSPSAIRSAI 593
G Y SGTS++ VAG LL + P I++ +
Sbjct: 389 PGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYL 435
Query: 594 MTTARTRDNTANP 606
+ AR R P
Sbjct: 436 IRGARRRPGDEYP 448
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 39/94 (41%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 507 FMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMS 566
+A FSS GP T +KPDI+APGVNI +A G Y SGTSM+
Sbjct: 186 VLADFSSRGP--STYGRIKPDISAPGVNIRSAVPGGG-------------YGSSSGTSMA 230
Query: 567 CPHVAGVVGLLKTAHPDWSPS--AIRSAIMTTAR 598
PHVAGV LL +A+P A + + TAR
Sbjct: 231 APHVAGVAALLWSANPSLIGDVDATEAILTETAR 264
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 9e-12
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 138 AWGKGRF-GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIG 196
W KG + GE +++A +D+GV P +F S+ K + + K+ +
Sbjct: 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFR----LDDDSKAKYSEEFEAKKK---KAGIGY 54
Query: 197 ARYFNRA--YAAYVKQHNISVNFNNTARDH---EGHGTHTLSTAGGNLVPGVNVFGMGNG 251
+Y+N +A +N + N N+ D HG H GN N G+
Sbjct: 55 GKYYNEKVPFA-----YNYADN-NDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGI--- 105
Query: 252 TAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDP-ADYFN 310
KG +P+A++ A KV + G +D K + A+ G DVI++SLG +
Sbjct: 106 --KGVAPEAQLLAMKV-FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLD 162
Query: 311 DGTAIGAFHAVKHGIVVVCSAANSG 335
D A + G+VVV +A N G
Sbjct: 163 DPEQQAIKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 22/91 (24%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
ASFS+ G + D++APG I+ + P Y MSGTSM+ P
Sbjct: 190 ASFSNYGK-----WV---DVSAPGGGIL---------STTPDGD----YAYMSGTSMATP 228
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599
HVAGV LL + P S S +R A+ TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTADD 258
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAG----GNLVPGVNVFGMGNGTAKGGSPKA 260
V N + + NN +D GHGTH G V GV P+A
Sbjct: 20 LNIVGGANFTGDDNNDYQDGNGHGTHVAGIIAALDNGVGVVGVA-------------PEA 66
Query: 261 RVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFNDGTAIGAFH 319
+ A KV DG +DI+ G + AI +G+D+I++SLGG + + A
Sbjct: 67 DLYAVKVL---NDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALRE-----AIK 118
Query: 320 -AVKHGIVVVCSAANSGPELGTVT--NVSPWIITVGASTLDREFQNF 363
A GI+VV +A NSG + P +I VGA + +F
Sbjct: 119 KAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRASF 165
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-10
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT-- 460
A C L VKGKI++ RG + V+K A AGA G+I+ N+ + G T
Sbjct: 17 DDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGLGGTVG 76
Query: 461 -ADPHFLPASQITYKDGVKV 479
+P I+Y+DG +
Sbjct: 77 DPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 17/152 (11%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
V+ ++ A D GHGTH N G+ G +PKA++ KV ++
Sbjct: 58 VDNDSDAMDDNGHGTHVAGIIAAATN---NGTGVA-----GVAPKAKIMPVKVL---DAN 106
Query: 275 GQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANS 334
G ADI G A G VI++SLGG + +A G+VVV +A N
Sbjct: 107 GSGSLADIANGIRYAADKGAKVINLSLGGG---LGSTALQEAINYAWNKGVVVVAAAGNE 163
Query: 335 GPELGTVTNVSPWIITVGASTLDRE---FQNF 363
G + P I V A+ D + F N+
Sbjct: 164 GVSSVSYPAAYPGAIAVAATDQDDKRASFSNY 195
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 44/175 (25%)
Query: 426 LRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE-ITADPHFLPASQITYKDGVKVLDYIK 484
+ G T+ + + A +A + GM++ N S+GNE T + D VL
Sbjct: 129 MDGKTSFISRA--ANIAASKGMLVVN--SAGNEGSTQWKGIGAPA-----DAENVLS--- 176
Query: 485 SSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPE-ILKPDITAPGVNIIAAFTGAI 543
+G + + ASFSS GP T + LKPD+ A G I
Sbjct: 177 -----VGAVDANGNK---------ASFSSIGP---TADGRLKPDVMALGTGIY------- 212
Query: 544 GATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598
+GTS SCP +AG++ L AHP+W+ I+ AI+ +A
Sbjct: 213 ------VINGDGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 491 GYITSPSTYLNAKPSPFMASFSSAGPNKITPEIL-KPDITAPGVNIIAAFTGAIGATELP 549
Y +P+ + P +SF G TPE+ KPD+TAP + + G
Sbjct: 155 DYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAP--DGVNGTVDGDGDGPPN 212
Query: 550 YDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRD 609
+ GTS + PH AGV L+ +A+P +P+ IR A+ +TA P D
Sbjct: 213 F----------FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG---EPGYD 259
Query: 610 GSFKKATPFSYGSGHIRPNRA 630
+ GSG + +RA
Sbjct: 260 --------NASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 31/122 (25%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
+SFS GP D+ APG NI++ G G SGTS + P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPGGDGLA------------TTSGTSFAAP 230
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
V+G L+++ PD + + +R I TA D+ A RD G G + P
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRD--------DYVGYGVVDPV 279
Query: 629 RA 630
A
Sbjct: 280 AA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 9e-10
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 418 VKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPH-FLPASQITYKDG 476
VKGKI + RG+ V+K A AGAVG+I+ N+ T F+P I+ +DG
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDG 105
Query: 477 VKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGP 516
+ ++SS + +T +P +A FSS GP
Sbjct: 106 EALKAALESS-----KKLTFNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 20/139 (14%)
Query: 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADI 282
D GHGTH T GG G G G +P+A + KV DG + I
Sbjct: 41 DAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL----DDGGGSLSQI 87
Query: 283 LKGFDMAIHDGVDVISVSLGGD--PADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT 340
+ G + A+ DV+S+SLGG D + A+ A + G + V SA N G
Sbjct: 88 IAGMEWAVEKDADVVSMSLGGTYYSEDPLEE--AVEALSN-QTGALFVVSAGNEGHGTSG 144
Query: 341 VTNVSPWIITVGASTLDRE 359
+ ++VGA +DR+
Sbjct: 145 SPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-09
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 380 SLPNDTFYPLITGLQAKAANADDTAASL--CKNGALDHEK--VKGKILVCLRGDTARVDK 435
L + ++ A L C G D VKGKI++ RG + +K
Sbjct: 3 ILATTGYAGSALLFNPPSSPVGVVAGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEK 62
Query: 436 GRQAAVAGAVGMILCNDKSSGNEITADPHF------LPASQITYKDGVKVLDYIKSSDN 488
+ A AGA +I+ N+ +P I+Y DG +L +++
Sbjct: 63 VKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEAGKT 121
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 41/141 (29%), Positives = 55/141 (39%), Gaps = 27/141 (19%)
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
Y + N D GHGT G + NG KG +P + +
Sbjct: 33 GGYDGKEAGETGDINDIVDKLGHGTAV----AGQIA--------ANGNIKGVAPGIGIVS 80
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG----------DPADYFNDGTA 314
Y+V S G + I+K A DGVDVI++SLGG D +Y A
Sbjct: 81 YRVFG---SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKA 137
Query: 315 IGAFHAVKHGIVVVCSAANSG 335
I +A G +VV +A N G
Sbjct: 138 IN--YAKSKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 40/115 (34%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKV--CWPQVSDGQCFDA 280
D +GHGTH N N +G G +P+A + AY+V C G +
Sbjct: 66 DCQGHGTHVAGIIAANP----NAYG-----FTGVAPEATLGAYRVFGC-----SGSTTED 111
Query: 281 DILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSG 335
I+ F A DG DVI+ SLGG P+ + D A+ A V G+VV +A N G
Sbjct: 112 TIIAAFLRAYEDGADVITASLGG-PSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP----YNIMSGTS 564
AS+S+ GP D++APG + A P Y + GTS
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDC--ASDVNGDGYPDSNTGTTSPGGSTYGFLQGTS 253
Query: 565 MSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
M+ PHVAGV L+K+ +P +P+ I S + +T
Sbjct: 254 MAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 46/157 (29%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
D GHGTHT+ T GN G+G G +P AR A + DAD
Sbjct: 49 YDDNGHGTHTMGTMVGN---------DGDGQQIGVAPGARWIACRAL----DRNGGNDAD 95
Query: 282 ILKGFD--MAIHD----------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVC 329
L+ +A D DVI+ S GG D A+ A+ A GI V
Sbjct: 96 YLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQPAVAAWRAA--GIFPVF 153
Query: 330 SAANSGPELGTVTNV---SPWIITVGASTLDREFQNF 363
+A N GP T+ P VGA+ + +F
Sbjct: 154 AAGNDGPRCSTLNAPPANYPESFAVGATDRNDVLADF 190
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 37/151 (24%)
Query: 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKV--CWPQVSDG 275
+ D GHGTH T G G G + KA + A KV C +
Sbjct: 56 GDPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAVKVLDCNGSGT-- 99
Query: 276 QCFDADILKGFDMAIHDGVD-----VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCS 330
+ I+ G + +D V ++SLGG + + A+ A AV G+VVV +
Sbjct: 100 ---LSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDA--AVAA--AVNAGVVVVVA 152
Query: 331 AANSGPELGTVTNVSP----WIITVGASTLD 357
A NS N SP ITVGA+ D
Sbjct: 153 AGNSN---QDACNYSPASAPEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
VN +N D GHGTH G V G G A G + ++ K +D
Sbjct: 53 VNNDNDPMDDNGHGTHVAGIIGA-------VGNNGIGIA-GVAWNVKIMPLKFL---GAD 101
Query: 275 GQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAAN 333
G +D +K D A+ G +I+ S GG P+ D AI A+ GI+ V +A N
Sbjct: 102 GSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD--AIAR--AIDAGILFVAAAGN 157
Query: 334 SGPELGTV-----TNVSPWIITVGAST 355
G + II+V A+
Sbjct: 158 DGTNNDKTPTYPASYDLDNIISVAATD 184
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+FS+ + DI APGV+I++A G Y MSGTSM+
Sbjct: 199 TGNFSAVANFSNG----EVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMAT 241
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMR 608
PHVAGV L A P A+ + + AR
Sbjct: 242 PHVAGVAALWAEALPKAGGRALAALLQ--ARLTAARTTQFA 280
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
Query: 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS-DGQCF 278
+D GHGTH T G VPG G + A +A V DG
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVPGPRY---------GVARGAEIALIGK----VLGDGGGG 87
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGA 317
D IL G A+ +G DVIS+SLG D + G G
Sbjct: 88 DGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (129), Expect = 2e-07
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 486 SDNPMGYITSPSTYLNAK--------PSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537
S+ G + P++Y S +ASFS+ G DI APGVNI++
Sbjct: 288 SNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPT------GVDIAAPGVNILS 341
Query: 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP-DWSPSAIRSAIMTT 596
Y +SGTSM+ PHV+GV L+ +A+P + +P+ +R+ I+TT
Sbjct: 342 LSAVN------TLPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTT 395
Query: 597 AR 598
A
Sbjct: 396 AG 397
|
Length = 508 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 33/141 (23%)
Query: 227 HGTHTLSTAGGN---------LVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQC 277
HGTH A + + PG + + G + GS + G
Sbjct: 187 HGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGS--------------METGTA 232
Query: 278 FDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAV--KHGIVVVCSAANSG 335
+++ AI D+I++S G + N G I + KHG++ V SA N+G
Sbjct: 233 ----LVRAMIAAIETKCDLINMSYGEA-THWPNSGRIIELMNEAVNKHGVIFVSSAGNNG 287
Query: 336 PELGTVT---NVSPWIITVGA 353
P L TV + +I VGA
Sbjct: 288 PALSTVGAPGGTTSSVIGVGA 308
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 527 DITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGL----LKTAHP 582
I+APG GAI +P T + +M+GTSMS P+ G + L LK
Sbjct: 346 SISAPG--------GAI--ASVPNWTLQ-GSQLMNGTSMSSPNACGGIALLLSGLKAEGI 394
Query: 583 DWSPSAIRSAIMTTAR 598
++P ++R A+ TA+
Sbjct: 395 PYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
AS+S+ G D+ APGV I TG A D Y SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASP 214
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
AGV L+ +A+P+ +P+ + + +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 33/136 (24%), Positives = 47/136 (34%), Gaps = 23/136 (16%)
Query: 212 NISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQ 271
++ + D + HGTH G GM G A P A + + +
Sbjct: 33 AVNDAGYASNGDGDSHGTHVAGVIAAARDGG----GMH-GVA----PDATLYSARASAS- 82
Query: 272 VSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIG------------AFH 319
+ DADI +D GV +I+ S GG+PA T G
Sbjct: 83 -AGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALAR 141
Query: 320 AVKHGIVVVCSAANSG 335
A G + V +A N G
Sbjct: 142 AANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 528 ITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPS 587
+ APG NI + Y +SGTS + PHV+G LL P +
Sbjct: 208 LAAPGENIYSTDPDGGNG-----------YGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 588 AIRSAIMTTAR 598
+R ++TTA
Sbjct: 257 QVRQTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 40/144 (27%), Positives = 54/144 (37%), Gaps = 39/144 (27%)
Query: 454 SSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSS 513
S+GN T + F PA Y G I + N ASFS+
Sbjct: 168 SAGNSYTDEHRF-PA------------AYP-------GVIAVAALDTNDNK----ASFSN 203
Query: 514 AGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGV 573
G DI APGV I + + Y +SGTSM+ PHV+GV
Sbjct: 204 YG--------RWVDIAAPGVGTILSTVPKLDGDG------GGNYEYLSGTSMAAPHVSGV 249
Query: 574 VGLLKTAHPDW-SPSAIRSAIMTT 596
L+ + PD +P IR + +
Sbjct: 250 AALVLSKFPDVFTPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 416 EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKD 475
E+VKGKI + RGD V+K R+ AGA+G I+ ++ + TA P F + D
Sbjct: 37 EEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTA-PMFAMSGDGDSTD 95
Query: 476 GVKV 479
V +
Sbjct: 96 DVTI 99
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 505 SPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTS 564
+ +A+FS+ G + D+ APG I + P + Y SGTS
Sbjct: 218 NNLVANFSNYGKKNV-------DVFAPGERIYST---------TPDNE----YETDSGTS 257
Query: 565 MSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
M+ P V+GV L+ + +P+ + ++ I+ +
Sbjct: 258 MAAPVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 46/195 (23%), Positives = 71/195 (36%), Gaps = 34/195 (17%)
Query: 216 NFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDG 275
N + D GHGT A G N G G +P A++ ++ S G
Sbjct: 33 NDPTSDID--GHGTACAGVAAAV---GNNGLG-----VAGVAPGAKLMPVRIA---DSLG 79
Query: 276 QCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKH-----GIVVVCS 330
+ +DI + A +G DVIS S GG + +AI A + G VV+ +
Sbjct: 80 YAYWSDIAQAITWAADNGADVISNSWGG-SDSTESISSAIDN--AATYGRNGKGGVVLFA 136
Query: 331 AANSGPELGTVTNVSPWIITVGAST-LDRE--FQNFVELRNGQRFKGTSLSKSLPNDTFY 387
A NSG + + +P +I V A+ D + N+ G + P +
Sbjct: 137 AGNSGRSVSSGYAANPSVIAVAATDSNDARASYSNY----------GNYVDLVAPGVGIW 186
Query: 388 PLITGLQAKAANADD 402
TG +
Sbjct: 187 TTGTGRGSAGDYPGG 201
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|239044 cd02129, PA_hSPPL_like, PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVD 434
SL L T PL + T++ LC + +KGK +V +RG+ +
Sbjct: 10 ASLPSDLDKATLLPL----------RNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYE 59
Query: 435 KGRQAAVAGAVGMILCNDKS----SGNEITADPHFLPASQITYKD 475
K R A GA G+++ + + SGN + +P + ++YKD
Sbjct: 60 KARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKD 104
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 120 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 59/234 (25%), Positives = 79/234 (33%), Gaps = 54/234 (23%)
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
GE ++IA +DTGV +S + + Y
Sbjct: 1 GEGVVIAIVDTGV-----DYSHPDLDIYGNFSWK----------------LKFDYKAYLL 39
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGM-GNGTAKGGSPKARVA 263
K V D HGT S A G N++G G +G +P A++A
Sbjct: 40 PGMDKWGGFYVIMY----DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIA 95
Query: 264 AYKVCW-PQVSDGQCFDADILKGFDMAIHDG---------VDVISVSLGGDPADYF-NDG 312
A K W V + A GFD VDVIS S G F G
Sbjct: 96 AVKALWFGDVIYAWLWTA----GFDPVDRKLSWIYTGGPRVDVISNSWG---ISNFAYTG 148
Query: 313 TAIGA--------FHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTL 356
A G G+ +V +A N GP GT+T + I+VGA+T
Sbjct: 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATN 202
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 52/220 (23%), Positives = 73/220 (33%), Gaps = 83/220 (37%)
Query: 181 QNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLV 240
+ + + N +++G F V S N N T DH GT LST G
Sbjct: 16 EAFAFKHLFKNLRILGEYDF-------VDN---SNNTNYTDDDH---GTAVLSTMAGY-T 61
Query: 241 PGVNVFGMGNGTAKGGSPKAR--------------------VAAYKVCWPQVSDGQCFDA 280
PGV V G +P A VAA + A
Sbjct: 62 PGVMV---------GTAPNASYYLARTEDVASETPVEEDNWVAAAEW------------A 100
Query: 281 DILKGFDMAIHDGVDVISVSLG----GDPADYF-----NDGTAI---GAFHAVKHGIVVV 328
D L GVD+IS SLG +P + + T+ A A G++VV
Sbjct: 101 DSL---------GVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVV 151
Query: 329 CSAANSGPELGTVTNVSP-----WIITVGASTLDREFQNF 363
SA N G + +++VGA + +F
Sbjct: 152 NSAGNEGS--TQWKGIGAPADAENVLSVGAVDANGNKASF 189
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCP 568
S+SS GP+ KPD+ A G A+ +++ GTSM+ P
Sbjct: 222 VSWSSRGPSIAG--DPKPDLAAIGA---FAWAPGRVLDSGGALDGNEAFDLFGGTSMATP 276
Query: 569 HVAGVVGLLKTAHPD------WSPSAIRSAIMTTA 597
AG L+ +A + + P +R+ +M+TA
Sbjct: 277 MTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.4 bits (101), Expect = 4e-04
Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 22/165 (13%)
Query: 203 AYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGG-SPKAR 261
A +A + + D GHGTH T NG G +P A+
Sbjct: 161 AGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAA--------VIFDNGAGVAGVAPGAK 212
Query: 262 VAAYKVCWPQVSDGQCFDADILKGFD--MAIHDGVDVISVSLGG--DPADYFNDGTAIGA 317
+ KV G +D+ +G + + DVI++SLGG + G A+ A
Sbjct: 213 LLLVKV--LGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAA 270
Query: 318 FHAVKHGIVVVCSAANSGPELGTVTNVSPW------IITVGASTL 356
G+V+V +A N G P +I VGA L
Sbjct: 271 AANAG-GVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314
|
Length = 508 |
| >gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 392 GLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451
G+ A D + C D VKG I++ RG DK + AA GAV +I+ N
Sbjct: 16 GVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVN 75
Query: 452 D 452
+
Sbjct: 76 N 76
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 21/80 (26%)
Query: 528 ITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLL------KTAH 581
I APG NI+ A G G SGTS + VAG+ LL + A
Sbjct: 189 ILAPGENILGAALG--GEVVR-----------RSGTSFAAAIVAGIAALLLSLQLRRGAP 235
Query: 582 PDWSPSAIRSAIMTTARTRD 601
PD P A+R A++ TA D
Sbjct: 236 PD--PLAVRRALLETATPCD 253
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 35/147 (23%)
Query: 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQC--FDADILK 284
HGTH T GV V G+ + AR+ +V G+C +DI+
Sbjct: 73 HGTHVAGTIAAVTNNGVGVAGV--------AWGARILPVRVL------GKCGGTLSDIVD 118
Query: 285 GFDMA---IHDGV-------DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANS 334
G A GV VI++SLGGD A AI A G++VV +A N
Sbjct: 119 GMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAINDVRAR--GVLVVVAAGNE 176
Query: 335 GPELGTVTNVSPW----IITVGASTLD 357
G + + +P +I VGA+ L
Sbjct: 177 G---SSASVDAPANCRGVIAVGATDLR 200
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-04
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 45/164 (27%)
Query: 450 CNDKSSGNEIT-----ADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKP 504
+ K S +I + + P ++ + V + IK +N Y SP+++ +AK
Sbjct: 474 SHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKNN--QYSLSPNSFYSAKY 531
Query: 505 SPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTS 564
+ APG NI + F P ++ Y ++GTS
Sbjct: 532 C---------------------QLAAPGTNIYSTF---------PKNS----YRKLNGTS 557
Query: 565 MSCPHVAGVVGLLKTAHPDWSPSAI----RSAIMTTARTRDNTA 604
M+ PHVA + L+ + +P S + + +I+ ++
Sbjct: 558 MAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLKNKVK 601
|
Length = 639 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 45/216 (20%)
Query: 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204
G+ I+ DTG+ F D + +RK++
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF---------------HRKIV--------- 41
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
+ ++T D +GHGTH G G + KG +PKA++
Sbjct: 42 --------RYDSLSDTKDDVDGHGTHVAGIIAGK---GND--SSSISLYKGVAPKAKLYF 88
Query: 265 YKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKH- 323
+ S D+ K F G + S S G + + A +
Sbjct: 89 QDI--GDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNP 146
Query: 324 GIVVVCSAANSGPELGTVTNVSPW----IITVGAST 355
I+ V SA N G + G+ T SP ++TVGAS
Sbjct: 147 DILFVFSAGNDGND-GSNTIGSPATAKNVLTVGASN 181
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 520 TPEILKPDIT--APGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLL 577
+ A GV+IIA T SG S + PHV G+V LL
Sbjct: 155 PKSFWYIYVEFSADGVDIIAPAPHGRYLTV-------------SGNSFAAPHVTGMVALL 201
Query: 578 KTAHPDWSPSAIRSAIMTTAR 598
+ PD + ++ + A
Sbjct: 202 LSEKPDIDANDLKRLLQRLAV 222
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.9 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.3 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.28 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.9 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.87 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.86 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.85 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.84 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.75 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.74 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.73 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.72 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.66 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.64 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.63 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.61 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.59 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.59 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.56 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.52 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.49 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.38 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.33 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.65 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.92 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 96.89 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 96.8 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.52 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.3 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.18 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.76 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 95.65 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.59 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 95.49 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.33 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 90.57 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 90.0 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 87.69 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 87.6 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=447.99 Aligned_cols=306 Identities=55% Similarity=0.875 Sum_probs=258.0
Q ss_pred ccccccccccccccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCC-Ccccccc
Q 048642 114 KKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNR 192 (782)
Q Consensus 114 ~~~~~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 192 (782)
+++++++++.++|+...- ...+|..+.+|+||+|||||||||++||+|.+.+..+++..|.+.|..+.. ....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 468899999999988542 122577799999999999999999999999999899999999999998877 5677999
Q ss_pred cccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCC
Q 048642 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV 272 (782)
Q Consensus 193 ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~ 272 (782)
|+++.++|.+++....+ .+... +..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..
T Consensus 78 ki~g~~~~~~~~~~~~~-~~~~~-~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~- 154 (307)
T cd04852 78 KLIGARYFSDGYDAYGG-FNSDG-EYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD- 154 (307)
T ss_pred eEEEEEEcccchhhccC-ccccc-CCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-
Confidence 99999999877654322 11111 3567789999999999999999877666666667788999999999999999874
Q ss_pred CCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEc
Q 048642 273 SDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVG 352 (782)
Q Consensus 273 ~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVg 352 (782)
+.+..+++++||++|++++++|||||||......+.+.+..++.++.++|++||+||||+|+...+.++..||+++||
T Consensus 155 --~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 155 --GGCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred --CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 368899999999999999999999999998545567788888889999999999999999988778888899999999
Q ss_pred cccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcch
Q 048642 353 ASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTAR 432 (782)
Q Consensus 353 as~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 432 (782)
|++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 621
Q ss_pred hhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccccc
Q 048642 433 VDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFS 512 (782)
Q Consensus 433 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 512 (782)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 513 SAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 513 s~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
+||||+|||.+|+++++... ..........|..++|||||||+|||++|||+|++|+|+|.|||++
T Consensus 236 -----------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~ 301 (307)
T cd04852 236 -----------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSA 301 (307)
T ss_pred -----------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 46799999999999987531 1112233458999999999999999999999999999999999999
Q ss_pred HHhccc
Q 048642 593 IMTTAR 598 (782)
Q Consensus 593 L~~TA~ 598 (782)
|++||+
T Consensus 302 L~~tA~ 307 (307)
T cd04852 302 LMTTAY 307 (307)
T ss_pred HHHhcC
Confidence 999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-51 Score=455.74 Aligned_cols=303 Identities=18% Similarity=0.135 Sum_probs=215.3
Q ss_pred ccccccCCcccCCCccc--cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccch
Q 048642 124 FMLLENNGVIHSSSAWG--KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFN 201 (782)
Q Consensus 124 ~~g~~~~~~~~~~~~w~--~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~ 201 (782)
.|+++..+ ...+|. .+.+|+||+|||||||||++||||.++-... +....|.. +-+ .+++..+ +..
T Consensus 295 qWgLd~i~---~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd--giD---dD~nG~v---dd~ 362 (639)
T PTZ00262 295 QWGLDLTR---LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK--GID---DDNNGNV---DDE 362 (639)
T ss_pred CcCcchhC---chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc--ccc---cccCCcc---ccc
Confidence 34555443 345555 4568999999999999999999998641000 00000100 000 0000000 000
Q ss_pred hhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhH
Q 048642 202 RAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~ 281 (782)
.+|++.. +...|.|..||||||||||||...+ +..+.||||+|+|+++|+++.. |.+..++
T Consensus 363 ~G~nfVd--------~~~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~---G~G~~sd 423 (639)
T PTZ00262 363 YGANFVN--------NDGGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSH---KLGRLGD 423 (639)
T ss_pred ccccccC--------CCCCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCC---CCccHHH
Confidence 1222221 2345789999999999999997432 3346899999999999999876 4678999
Q ss_pred HHHHHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc--------------ccC----
Q 048642 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT--------------VTN---- 343 (782)
Q Consensus 282 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~---- 343 (782)
+++||+||++.|++|||||||.. .....+..++.+|.++|++||+||||+|+.... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~---~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFD---EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccC---CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 99999999999999999999976 234567778889999999999999999854211 111
Q ss_pred CCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEE
Q 048642 344 VSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423 (782)
Q Consensus 344 ~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 423 (782)
..|++|+|||++.+..
T Consensus 501 ~~~nVIaVGAv~~d~~---------------------------------------------------------------- 516 (639)
T PTZ00262 501 KLRNVITVSNLIKDKN---------------------------------------------------------------- 516 (639)
T ss_pred cCCCEEEEeeccCCCC----------------------------------------------------------------
Confidence 2367888887542210
Q ss_pred EEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCC
Q 048642 424 VCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAK 503 (782)
Q Consensus 424 l~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 503 (782)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC
Q 048642 504 PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD 583 (782)
Q Consensus 504 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 583 (782)
.....+.||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+
T Consensus 517 ~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~ 576 (639)
T PTZ00262 517 NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPS 576 (639)
T ss_pred CcccccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCC
Confidence 00123456677632 349999999999998865 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccc-ccccCccccCCCCccc
Q 048642 584 WSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYG-SGHIRPNRAMDPGLVY 637 (782)
Q Consensus 584 ~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G-~G~vd~~~A~~~~lv~ 637 (782)
|++.||+++|++||.++... +..+| .|+||+++|++..+-+
T Consensus 577 LT~~qV~~iL~~TA~~l~~~-------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 577 LSYEEVIRILKESIVQLPSL-------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCHHHHHHHHHHhCccCCCC-------------CCccccCcEEcHHHHHHHHHhc
Confidence 99999999999999876321 22233 3899999999876644
|
|
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=410.17 Aligned_cols=244 Identities=25% Similarity=0.393 Sum_probs=199.7
Q ss_pred cccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCC
Q 048642 139 WGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFN 218 (782)
Q Consensus 139 w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~ 218 (782)
|+++++|+||+|||||||||.+||+|.+. +...+|. +.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~---------------~~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWT---------------NE 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccC---------------CC
Confidence 89999999999999999999999999742 1111121 12
Q ss_pred CCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEE
Q 048642 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVIS 298 (782)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn 298 (782)
....|..||||||||||+|+. ....||||+|+|+.+|++.+. +.+..+.++++|+||++++++|||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~---~~~~~~~~~~a~~~a~~~~~~Vin 104 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN---QVSYTSWFLDAFNYAILTKIDVLN 104 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC---CCchHHHHHHHHHhhhhcCCCEEE
Confidence 245578899999999999974 134899999999999999876 346677899999999999999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeee
Q 048642 299 VSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376 (782)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~ 376 (782)
||||... +...++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 105 ~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 162 (255)
T cd07479 105 LSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------------- 162 (255)
T ss_pred eeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------------
Confidence 9999862 3345666777788899999999999999765443 345688999997432
Q ss_pred ccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC
Q 048642 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG 456 (782)
Q Consensus 377 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 456 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC----CCCCcCCeEEeCC
Q 048642 457 NEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI----TPEILKPDITAPG 532 (782)
Q Consensus 457 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG 532 (782)
.+.++.|||+|++.. ..+++||||.|||
T Consensus 163 ------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG 194 (255)
T cd07479 163 ------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYG 194 (255)
T ss_pred ------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecC
Confidence 246789999996421 2678899999999
Q ss_pred ceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 048642 533 VNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP----DWSPSAIRSAIMTTARTRD 601 (782)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~~sp~~ik~~L~~TA~~~~ 601 (782)
.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 195 ~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 195 SGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999886643 788999999999999999999999998 7899999999999999863
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=416.20 Aligned_cols=287 Identities=28% Similarity=0.296 Sum_probs=191.3
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|||||||||++||||.++.. ..|.-. +.+..++. .+++.... ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~--------~d~~~~~~------~g~d~~~~-------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK--------FDYKAYLL------PGMDKWGG-------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc--------cCcCCCcc------CCcCCCCC-------ccCCCCCc
Confidence 8999999999999999999975310 000000 00001111 11111110 12346789
Q ss_pred CCccchhhhhhhccCCCCcccccc-CCCcceecCccccccccccccCCCCCCCCChhHHHH-------HHHHh--hhCCC
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGM-GNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK-------GFDMA--IHDGV 294 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~-------ai~~a--~~~g~ 294 (782)
+||||||||||||....+.+.+++ ....+.||||+|+|+.+|++... +.+....+.. +++|. .++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 132 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFG---DVIYAWLWTAGFDPVDRKLSWIYTGGPRV 132 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecC---CcchhhhhhhccchhhhhhhhhhccCCCc
Confidence 999999999999986433332222 13457999999999999998644 1232222332 34443 36899
Q ss_pred eEEEEccCCCCCCC-----CCCHHHHHHHH-HHhcCcEEEEecCCCCCCCCccc--CCCCcEEEEccccCCccceeeEEe
Q 048642 295 DVISVSLGGDPADY-----FNDGTAIGAFH-AVKHGIVVVCSAANSGPELGTVT--NVSPWIITVGASTLDREFQNFVEL 366 (782)
Q Consensus 295 dVIn~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVgas~~~~~~~~~~~~ 366 (782)
+|||||||.....+ ..+..+..... +.++|+++|+||||+|+...+.. ..++++|+|||++..+....
T Consensus 133 ~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---- 208 (311)
T cd07497 133 DVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---- 208 (311)
T ss_pred eEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----
Confidence 99999999863211 11233333333 24899999999999997655444 35789999999764321000
Q ss_pred cCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceE
Q 048642 367 RNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVG 446 (782)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 446 (782)
+.+..
T Consensus 209 --------------------~~~~~------------------------------------------------------- 213 (311)
T cd07497 209 --------------------YLFGY------------------------------------------------------- 213 (311)
T ss_pred --------------------hhhcc-------------------------------------------------------
Confidence 00000
Q ss_pred EEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCC
Q 048642 447 MILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKP 526 (782)
Q Consensus 447 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (782)
.....+.++.||||||+. ++++||
T Consensus 214 ------------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kP 237 (311)
T cd07497 214 ------------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKP 237 (311)
T ss_pred ------------------------------------------------------ccCCCCCccccccCCCCc--ccCCCC
Confidence 001135789999999998 899999
Q ss_pred eEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 048642 527 DITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP------DWSPSAIRSAIMTTA 597 (782)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~sp~~ik~~L~~TA 597 (782)
||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 238 dv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 238 DLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999877542100 011224799999999999999999999999986 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=407.86 Aligned_cols=270 Identities=23% Similarity=0.212 Sum_probs=201.5
Q ss_pred CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCC
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTA 221 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (782)
+++|+||+|||||||||.+||++.+-.. .++.+...+.. .....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~--------------~~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLG--------------DLDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeecc--------------ccCCC
Confidence 5689999999999999999986532211 11111111111 11234
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin~S~ 98 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIVDDI 98 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 578899999999994 67999999998873 3478899999999999999999999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCc-ccCCCCcEEEEccccCCccceeeEEecCCeEEeeeecc
Q 048642 302 GGDPADY-FNDGTAIGAFHAVKH-GIVVVCSAANSGPELGT-VTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLS 378 (782)
Q Consensus 302 G~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~ 378 (782)
|.....+ .+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++...........+
T Consensus 99 g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------- 167 (275)
T cd05562 99 GYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------- 167 (275)
T ss_pred cccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------
Confidence 9874333 344677788888887 99999999999975432 345689999999976543110000000
Q ss_pred CCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc
Q 048642 379 KSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE 458 (782)
Q Consensus 379 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 458 (782)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCc-eEEE
Q 048642 459 ITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGV-NIIA 537 (782)
Q Consensus 459 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~s 537 (782)
........+.||++||+. ++++||||+|||+ ++.+
T Consensus 168 ------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~ 203 (275)
T cd05562 168 ------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTV 203 (275)
T ss_pred ------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccC
Confidence 000012345678899987 7899999999975 4454
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCC
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATP 617 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 617 (782)
....+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++... ..+
T Consensus 204 ~~~~~-------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~d 259 (275)
T cd05562 204 DGDGD-------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP-----------GYD 259 (275)
T ss_pred CCcCC-------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-----------CCC
Confidence 44332 789999999999999999999999999999999999999999987432 346
Q ss_pred CcccccccCccccCC
Q 048642 618 FSYGSGHIRPNRAMD 632 (782)
Q Consensus 618 ~~~G~G~vd~~~A~~ 632 (782)
..||||+||+.+|++
T Consensus 260 ~~~G~G~vda~~Av~ 274 (275)
T cd05562 260 NASGSGLVDADRAVA 274 (275)
T ss_pred CCcCcCcccHHHHhh
Confidence 789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=420.44 Aligned_cols=317 Identities=29% Similarity=0.363 Sum_probs=235.5
Q ss_pred CccccCC-CCCceEEEEecCCcCcCCCCccCCCCCCCCC---CccccccCCCCCcccccccccccccchhhHhhhccccc
Q 048642 137 SAWGKGR-FGEDIIIANLDTGVWPESKSFSDEGYGPVPS---RWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHN 212 (782)
Q Consensus 137 ~~w~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~---~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~ 212 (782)
++|+++. +|+||+|||||||||++||+|.+....+... .+............+.+.+++..++|.++..
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND------- 73 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC-------
Confidence 3788888 9999999999999999999998764332111 0011111111134566778877777765411
Q ss_pred ccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 213 ISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
+.....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.... .+.+....+++|++++++.
T Consensus 74 ----~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~-~~~~~~~~~~~ai~~a~~~ 143 (346)
T cd07475 74 ----DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPE-GGSTYDDAYAKAIEDAVKL 143 (346)
T ss_pred ----ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCC-CCCCCHHHHHHHHHHHHHc
Confidence 111245789999999999999863321 134679999999999999997411 1367888899999999999
Q ss_pred CCeEEEEccCCCCC-CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc----------------CCCCcEEEEcccc
Q 048642 293 GVDVISVSLGGDPA-DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT----------------NVSPWIITVGAST 355 (782)
Q Consensus 293 g~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~vitVgas~ 355 (782)
|++|||||||.... ......+..++.++.++|++||+||||+|....... ...+++|+||++.
T Consensus 144 g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~ 223 (346)
T cd07475 144 GADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223 (346)
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc
Confidence 99999999999832 245567778888899999999999999985432211 1245666666533
Q ss_pred CCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhh
Q 048642 356 LDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDK 435 (782)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 435 (782)
...
T Consensus 224 ~~~----------------------------------------------------------------------------- 226 (346)
T cd07475 224 KKV----------------------------------------------------------------------------- 226 (346)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCC
Q 048642 436 GRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAG 515 (782)
Q Consensus 436 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 515 (782)
.....+.++.||+||
T Consensus 227 -----------------------------------------------------------------~~~~~~~~~~~S~~G 241 (346)
T cd07475 227 -----------------------------------------------------------------PNPNGGQMSGFSSWG 241 (346)
T ss_pred -----------------------------------------------------------------CCCCCCccCCCcCCC
Confidence 011235788999999
Q ss_pred CCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh----CCCCCHHH---
Q 048642 516 PNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSA--- 588 (782)
Q Consensus 516 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~--- 588 (782)
|+. .+++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 242 ~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~ 306 (346)
T cd07475 242 PTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVD 306 (346)
T ss_pred CCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 987 8899999999999999988764 7899999999999999999999998 78999876
Q ss_pred -HHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 589 -IRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 589 -ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
||++|++||.+.... ...+.++.+..+|+|+||+.+|++
T Consensus 307 ~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 307 LVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 112456778899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=412.49 Aligned_cols=294 Identities=29% Similarity=0.370 Sum_probs=229.4
Q ss_pred CCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhh-Hhhhccccccc
Q 048642 136 SSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRA-YAAYVKQHNIS 214 (782)
Q Consensus 136 ~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~-~~~~~~~~~~~ 214 (782)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.++|..+ +.....+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~~~~~~--- 59 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDGTNPPV--- 59 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCcccccccCCC---
Confidence 5799999999999999999999999999986411 11222233333211 11000000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++... +....+.++++|++|+++++
T Consensus 60 --~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 60 --PDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS---GSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred --CCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC---CCCCHHHHHHHHHHHHhcCC
Confidence 2345667899999999999998632 345899999999999999865 45778889999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 126 ~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------- 188 (312)
T cd07489 126 DVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------- 188 (312)
T ss_pred CEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------
Confidence 99999999873 344577777888899999999999999986532 2234568888888621
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
+.||+|||+. +...||||+||
T Consensus 189 ---------------------------------------------------------~~~s~~g~~~--~~~~kpdv~Ap 209 (312)
T cd07489 189 ---------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAP 209 (312)
T ss_pred ---------------------------------------------------------CCccCCCCCC--CCCcCccEEcC
Confidence 4689999987 78899999999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH-PDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
|++|+++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++.........
T Consensus 210 G~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~- 277 (312)
T cd07489 210 GGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL- 277 (312)
T ss_pred CCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc-
Confidence 9999999887521 68999999999999999999999999 9999999999999999987543211100
Q ss_pred CCCCCCCCcccccccCccccCCCCc
Q 048642 611 SFKKATPFSYGSGHIRPNRAMDPGL 635 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~~~l 635 (782)
..+++...+|+|+||+.+|++..-
T Consensus 278 -~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 278 -PDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred -cCCCCHhhcCcceeeHHHHhcCCc
Confidence 114667899999999999999644
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=425.51 Aligned_cols=408 Identities=23% Similarity=0.265 Sum_probs=239.9
Q ss_pred CCCCceEEEEecCCcCcCCCCccC-CCCCCCCCCccccccCCCCCcccccccccccccchh-hHhhhcccccccccCCCC
Q 048642 143 RFGEDIIIANLDTGVWPESKSFSD-EGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNR-AYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 143 ~~G~gV~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (782)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+... ....+...+.. ..+......++. +...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~p~--~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIINAALASDNPY--DIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHHHHHhcCCcc--ccCc
Confidence 379999999999999999999986 56789999999876654320 11111111111 111110000100 2345
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCC-------CCCChhHHHHHHHHhhhC-
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD-------GQCFDADILKGFDMAIHD- 292 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-------g~~~~~~i~~ai~~a~~~- 292 (782)
..|..||||||||||||+..+ +..+.||||+|+|+++|++...... ..+...++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 678999999999999998532 3456899999999999999876210 016788999999999874
Q ss_pred ----CCeEEEEccCCC-CCCCCCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCcccCC-----CC--cEEEEccccCCcc
Q 048642 293 ----GVDVISVSLGGD-PADYFNDGTAIGAFHAVKH-GIVVVCSAANSGPELGTVTNV-----SP--WIITVGASTLDRE 359 (782)
Q Consensus 293 ----g~dVIn~SlG~~-~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~p--~vitVgas~~~~~ 359 (782)
.+.|||||||.. ..+...++++.++..+..+ |++||+||||+|......... .. --+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 478999999987 3455677888888887766 999999999999654333321 00 012233211 11
Q ss_pred ceeeEEe--cCCeEEe-----eeeccCCCCC---CcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCC
Q 048642 360 FQNFVEL--RNGQRFK-----GTSLSKSLPN---DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGD 429 (782)
Q Consensus 360 ~~~~~~~--~~~~~~~-----g~~~~~~~~~---~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 429 (782)
+.-.+-. .+...+. |+....-... ...+.+.... ...|... ..+....|.-.+.-+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~-----------t~i~v~y-~~~~~~~g~~~i~i~-- 289 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEG-----------TTVYVYY-YLPEPYTGDQLIFIR-- 289 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECC-----------eEEEEEE-cCCCCCCCCeEEEEE--
Confidence 1000000 0000000 0000000000 0000000000 0000000 001111111111111
Q ss_pred cchhhhhHHHHHcCceEEEEeccCC-CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCee------eccC
Q 048642 430 TARVDKGRQAAVAGAVGMILCNDKS-SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPST------YLNA 502 (782)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~ 502 (782)
.. -...|-..+.++.... .+. ...|+|.-.+...+..++ +.. +..++..+.. +...
T Consensus 290 ------~~-~~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~--~~~tit~Pa~~~~vitVga~ 352 (455)
T cd07478 290 ------FK-NIKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPD--PYTTLTIPGTARSVITVGAY 352 (455)
T ss_pred ------cc-CCCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCC--CCceEecCCCCCCcEEEEEE
Confidence 11 1233555555554322 111 123444333322222111 122 2223332211 1112
Q ss_pred C-CCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC
Q 048642 503 K-PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581 (782)
Q Consensus 503 ~-~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (782)
. ..+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 353 ~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~ 417 (455)
T cd07478 353 NQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWG 417 (455)
T ss_pred eCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhc
Confidence 2 235699999999998 8999999999999999999864 89999999999999999999999975
Q ss_pred ------CCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 582 ------PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 582 ------p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
|.+++++||++|++||+++.. ..+++++||||
T Consensus 418 ~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 418 IVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 567999999999999998742 24678899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=392.85 Aligned_cols=249 Identities=26% Similarity=0.291 Sum_probs=203.5
Q ss_pred ccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccC
Q 048642 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNF 217 (782)
Q Consensus 138 ~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (782)
+|..+.+|+||+|||||+|||++||+|++..+.+ ...+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~-------------------------~~~~~~--------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP-------------------------LFTYAA--------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc-------------------------ccCccc--------------c
Confidence 7999999999999999999999999998642111 001100 1
Q ss_pred CCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEE
Q 048642 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVI 297 (782)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVI 297 (782)
.....|..+|||||||||+|+. ...+.||||+|+|+.+|++.... +.++..++++||+||+++|++||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~--~~~~~~~i~~ai~~a~~~g~~VI 110 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDR--RGCSQLDLARAINLALEQGAHII 110 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCCEE
Confidence 2244577899999999999874 22468999999999999987652 13456789999999999999999
Q ss_pred EEccCCCC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeee
Q 048642 298 SVSLGGDP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376 (782)
Q Consensus 298 n~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~ 376 (782)
|||||... .......+..++.+|.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 111 N~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 171 (267)
T cd07476 111 NISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------- 171 (267)
T ss_pred EecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-------------------
Confidence 99999763 2234556788888899999999999999997766667778999999985421
Q ss_pred ccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC
Q 048642 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG 456 (782)
Q Consensus 377 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 456 (782)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEE
Q 048642 457 NEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNII 536 (782)
Q Consensus 457 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 536 (782)
+.++.||+||+.. .||||+|||.+|+
T Consensus 172 -------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~ 197 (267)
T cd07476 172 -------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENIL 197 (267)
T ss_pred -------------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCce
Confidence 3557899999754 3889999999999
Q ss_pred EeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccCC
Q 048642 537 AAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD----WSPSAIRSAIMTTARTRDNT 603 (782)
Q Consensus 537 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----~sp~~ik~~L~~TA~~~~~~ 603 (782)
++.+.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 198 ~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 198 GAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred eecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 998764 8899999999999999999999999887 89999999999999998543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=383.37 Aligned_cols=238 Identities=26% Similarity=0.368 Sum_probs=193.9
Q ss_pred eEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 148 IIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 148 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
|+|||||||||++||+|++. ++..+++. .....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~----------------~~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA----------------GPGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC----------------CCCCCCCCCC
Confidence 78999999999999999753 11111111 1135577899
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCC
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPAD 307 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 307 (782)
||||||||+|...+ . .||||+|+|+.+|++......+.++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 99999999998521 1 7999999999999988653222467888999999999999999999999752
Q ss_pred CCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcc
Q 048642 308 YFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTF 386 (782)
Q Consensus 308 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (782)
...+..++.++.++|++||+||||+|+.. ..++...+++|+||+++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34677788889999999999999999753 345556789999997542
Q ss_pred cceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcc
Q 048642 387 YPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFL 466 (782)
Q Consensus 387 ~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 466 (782)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCC
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGAT 546 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 546 (782)
.+.++.||++|+.. ||.|||.+|+++.+.+
T Consensus 154 --------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~---- 183 (239)
T cd05561 154 --------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG---- 183 (239)
T ss_pred --------------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC----
Confidence 13567899999976 9999999999977653
Q ss_pred CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 547 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 184 ---------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~G~G 239 (239)
T cd05561 184 ---------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVFGYG 239 (239)
T ss_pred ---------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCcCCC
Confidence 899999999999999999999999999 99999999999999987543 346789998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=394.33 Aligned_cols=291 Identities=38% Similarity=0.518 Sum_probs=216.8
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccc-cccccCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQH-NISVNFNNTARD 223 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~-~~~~~~~~~~~d 223 (782)
|+||+|||||+|||++||+|.+.. ..+.++...++|........... ...........|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGD 60 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCcccccccccccccCCCCC
Confidence 899999999999999999998541 12233333333332110000000 000000123456
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..+|||||||+|+|...+ ...+.||||+|+|+.+|++... +.+...++++||+++++++++|||||||.
T Consensus 61 ~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~---~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 61 ATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG---GSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 899999999999998532 3455899999999999999754 36788999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCC
Q 048642 304 DPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSL 381 (782)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (782)
... ...+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 130 ~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------------- 186 (295)
T cd07474 130 SVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------------- 186 (295)
T ss_pred CCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------------
Confidence 732 2456788888899999999999999998665544 345789999998541100
Q ss_pred CCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcccc
Q 048642 382 PNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITA 461 (782)
Q Consensus 382 ~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 461 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCC-CCCCCCCCCcCCeEEeCCceEEEeec
Q 048642 462 DPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSA-GPNKITPEILKPDITAPGVNIIAAFT 540 (782)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (782)
........|+++ |+.. ...+||||+|||++|++++.
T Consensus 187 -----------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~ 223 (295)
T cd07474 187 -----------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAP 223 (295)
T ss_pred -----------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeecc
Confidence 001233445555 4544 78899999999999999987
Q ss_pred CCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcc
Q 048642 541 GAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSY 620 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 620 (782)
.. ...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++..+
T Consensus 224 ~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~ 285 (295)
T cd07474 224 GS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQ 285 (295)
T ss_pred CC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhcc
Confidence 63 1278999999999999999999999999999999999999999998765432 12356789
Q ss_pred cccccCcccc
Q 048642 621 GSGHIRPNRA 630 (782)
Q Consensus 621 G~G~vd~~~A 630 (782)
|+|+||+.+|
T Consensus 286 G~G~l~~~~A 295 (295)
T cd07474 286 GAGRVDALRA 295 (295)
T ss_pred CcceeccccC
Confidence 9999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=387.50 Aligned_cols=267 Identities=22% Similarity=0.308 Sum_probs=190.3
Q ss_pred CceEEEEecCCcCcCCCCccCCCCCCCCCCccccccC---CCC-CcccccccccccccchhhHhhh----ccccccc---
Q 048642 146 EDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQN---STK-EGVRCNRKLIGARYFNRAYAAY----VKQHNIS--- 214 (782)
Q Consensus 146 ~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~---~~~-~~~~~~~ki~g~~~~~~~~~~~----~~~~~~~--- 214 (782)
|+|+|||||||||++||+|++. .|.+..+. +.+ +....-+++ ++++|...+... ..+.+..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~-~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDV-NGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccc-cCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999865 34332221 111 111111122 233333211100 0000000
Q ss_pred --ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 215 --VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 215 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
.++...+.+..+|||||||||+|...+ ...+.||||+|+|+.+|++... .....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHC
Confidence 001234557899999999999998532 2235899999999999998543 46778899999999999
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---cc--------CCCCcEEEEccccCCccce
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VT--------NVSPWIITVGASTLDREFQ 361 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgas~~~~~~~ 361 (782)
|++|||||||.... .....+..++..+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 223456677778899999999999999854211 11 1235677777643221
Q ss_pred eeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHH
Q 048642 362 NFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAV 441 (782)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 441 (782)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCC
Q 048642 442 AGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITP 521 (782)
Q Consensus 442 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 521 (782)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999974
Q ss_pred CCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 522 EILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
+|||.|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 359999999999998764 8999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=380.38 Aligned_cols=245 Identities=30% Similarity=0.369 Sum_probs=194.9
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC-CCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT-ARDHE 225 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 225 (782)
||+|||||||||++||+|.... ...+.++.+.++|.+. ... ..|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~-------------------~~~~~~i~~~~~~~~~--------------~~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH-------------------LFKNLRILGEYDFVDN--------------SNNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc-------------------cccCCceeeeecCccC--------------CCCCCCCCC
Confidence 7999999999999999994220 1123445555555432 112 36788
Q ss_pred CccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCC
Q 048642 226 GHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDP 305 (782)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 305 (782)
+|||||||||+|+. .+.+.||||+|+|+.+|+...... .......++.|++++.+.+++|||||||...
T Consensus 48 ~HGT~vagiia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~-~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 48 DHGTAVLSTMAGYT----------PGVMVGTAPNASYYLARTEDVASE-TPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CchhhhheeeeeCC----------CCCEEEeCCCCEEEEEEecccCCc-ccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 99999999999984 234689999999999998754321 1345667899999999999999999999873
Q ss_pred CCCC------------CCHHHHHHHHHHhcCcEEEEecCCCCCCC---CcccCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 306 ADYF------------NDGTAIGAFHAVKHGIVVVCSAANSGPEL---GTVTNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 306 ~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
.... ...+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 182 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------------- 182 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------------
Confidence 2111 23567788889999999999999999763 344556789999998432
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.++.||++||+. ++++||||+|
T Consensus 183 ------------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a 206 (261)
T cd07493 183 ------------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMA 206 (261)
T ss_pred ------------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEe
Confidence 13678899999987 8899999999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
||.+|++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 207 ~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 207 LGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999855432 7899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=379.90 Aligned_cols=247 Identities=35% Similarity=0.417 Sum_probs=194.6
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|||||+|||++||+|.+. |.+... .++...+.+.+. .. ....+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d~----------~~-~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFDP----------VG-NTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCcccccccccC----------CC-CCCCCCCC
Confidence 89999999999999999999864 111000 000000001000 00 23356688
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh------------C
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH------------D 292 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~------------~ 292 (782)
.+|||||||||+|... .+...||||+|+|+.+|++... .+...+++++++++++ .
T Consensus 52 ~~HGT~vagii~g~~~---------~~~~~GvAp~a~i~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (264)
T cd07481 52 NGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRN----GGNDADYLRCAQWMLAPTDSAGNPADPDL 118 (264)
T ss_pred CCchhhhhhheeecCC---------CCCceEECCCCeEEEEEeecCC----CCcHHHHHHHHHHHHhccccccccccccc
Confidence 8999999999998742 2223899999999999999876 4778899999999975 7
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---ccCCCCcEEEEccccCCccceeeEEecCC
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VTNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 119 ~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------- 183 (264)
T cd07481 119 APDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------- 183 (264)
T ss_pred CCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------
Confidence 89999999998732 24456666677889999999999999865433 3456789999998542
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
.+.++.||++||.. .+++||||+
T Consensus 184 -------------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ 206 (264)
T cd07481 184 -------------------------------------------------------NDVLADFSSRGPST--YGRIKPDIS 206 (264)
T ss_pred -------------------------------------------------------CCCCccccCCCCCC--CCCcCceEE
Confidence 24678999999987 789999999
Q ss_pred eCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 048642 530 APGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD--WSPSAIRSAIMTTAR 598 (782)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--~sp~~ik~~L~~TA~ 598 (782)
|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 207 ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 207 APGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999998764 8899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=376.83 Aligned_cols=332 Identities=25% Similarity=0.350 Sum_probs=258.2
Q ss_pred CCCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCccccc--c----------------cEeEEec---cceee
Q 048642 28 AIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKAR--D----------------AIFYSYQ---NHING 86 (782)
Q Consensus 28 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----------------~i~~~y~---~~~ng 86 (782)
..+.+|||.|++... .+....|.++++...+...... . .+.+.|. .+|+|
T Consensus 78 ~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~ 148 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG 148 (501)
T ss_pred ccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence 345789999996655 3667778888877654221100 0 1334443 37889
Q ss_pred EEEEcCHHHHHHHhCCCCeEEEEecccccccc-----cccccccccccCCccc-------CCCccccCCCCCceEEEEec
Q 048642 87 FAATLEEEEAAEIAKHPDVVSIFPNKGKKLHT-----TRSWDFMLLENNGVIH-------SSSAWGKGRFGEDIIIANLD 154 (782)
Q Consensus 87 ~s~~~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~w~~~~~G~gV~VaVID 154 (782)
+....+.+-+..++++|-++.++++..++... .+....|||..+.+.. ...+++ -..|+||...|+|
T Consensus 149 y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~D 227 (501)
T KOG1153|consen 149 YTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLD 227 (501)
T ss_pred cccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEec
Confidence 99999999999999999999999988776543 2233334555444332 111222 2389999999999
Q ss_pred CCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhh
Q 048642 155 TGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLST 234 (782)
Q Consensus 155 tGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 234 (782)
|||+.+||+|.++ +.| |.| +. ......|++||||||||+
T Consensus 228 TGVni~H~dFegR------a~w-Ga~-------------------i~---------------~~~~~~D~nGHGTH~AG~ 266 (501)
T KOG1153|consen 228 TGVNIEHPDFEGR------AIW-GAT-------------------IP---------------PKDGDEDCNGHGTHVAGL 266 (501)
T ss_pred ccccccccccccc------eec-ccc-------------------cC---------------CCCcccccCCCcceeeee
Confidence 9999999999876 333 111 00 122456899999999999
Q ss_pred hhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC---------CCeEEEEccCCCC
Q 048642 235 AGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD---------GVDVISVSLGGDP 305 (782)
Q Consensus 235 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~ 305 (782)
|++.. .|||.+++|+++||++++ |.+..+++++++|++++. +..|.|||+|+..
T Consensus 267 I~sKt--------------~GvAK~s~lvaVKVl~~d---GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~ 329 (501)
T KOG1153|consen 267 IGSKT--------------FGVAKNSNLVAVKVLRSD---GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR 329 (501)
T ss_pred eeccc--------------cccccccceEEEEEeccC---CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc
Confidence 99986 688999999999999999 789999999999999986 5799999999973
Q ss_pred CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccC-CCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCC
Q 048642 306 ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN-VSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPND 384 (782)
Q Consensus 306 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 384 (782)
.-++..|+++|.+.|+++++||||+..+.+..++ .+..+|||||++..
T Consensus 330 ----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------------- 378 (501)
T KOG1153|consen 330 ----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------------- 378 (501)
T ss_pred ----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------------
Confidence 4467788889999999999999999977665554 68899999997532
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCC
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPH 464 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 464 (782)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCC
Q 048642 465 FLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544 (782)
Q Consensus 465 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 544 (782)
+.+|.||+||+|+ ||.|||++|+|+|.+...
T Consensus 379 -----------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~ 409 (501)
T KOG1153|consen 379 -----------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN 409 (501)
T ss_pred -----------------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc
Confidence 5899999999999 999999999999998633
Q ss_pred CCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 048642 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD---------WSPSAIRSAIMTTAR 598 (782)
Q Consensus 545 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------~sp~~ik~~L~~TA~ 598 (782)
....+||||||+|||||++|..++++|. .+|.++|..++.-..
T Consensus 410 -----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 410 -----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 6678999999999999999999999883 378888887776544
|
|
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=378.23 Aligned_cols=264 Identities=28% Similarity=0.357 Sum_probs=201.9
Q ss_pred CccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccccc
Q 048642 137 SAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVN 216 (782)
Q Consensus 137 ~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (782)
++|..+.+|+||+|||||||||++||+|.+.... .+...+...+.......+
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~---- 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFVPNVGD---- 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccccccCC----
Confidence 4799999999999999999999999999865100 000011111100000000
Q ss_pred CCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeE
Q 048642 217 FNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDV 296 (782)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dV 296 (782)
......|..||||||||||+|...+.....|. ....|+||+|+|+.+|++... +.+....++++|+++++.|++|
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~---~~~~~~~~~~ai~~a~~~g~~V 127 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGR---YYVGDDAVAAAIVYAADNGAVI 127 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCC---CCccHHHHHHHHHHHHHcCCcE
Confidence 12345578899999999999975332211111 134679999999999999876 3678889999999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhc-------CcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCC
Q 048642 297 ISVSLGGDPADYFNDGTAIGAFHAVKH-------GIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 297 In~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
||||||......+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 128 in~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------ 195 (273)
T cd07485 128 LQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------ 195 (273)
T ss_pred EEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------
Confidence 999999874334555677777788877 9999999999998766666678999999985421
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
+.++.||++|+.. ||.
T Consensus 196 --------------------------------------------------------~~~~~~S~~g~~~--------~i~ 211 (273)
T cd07485 196 --------------------------------------------------------DNKASFSNYGRWV--------DIA 211 (273)
T ss_pred --------------------------------------------------------CCcCccccCCCce--------EEE
Confidence 3667899999987 999
Q ss_pred eCCc-eEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 048642 530 APGV-NIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD-WSPSAIRSAIMTT 596 (782)
Q Consensus 530 APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~sp~~ik~~L~~T 596 (782)
|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 212 apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 212 APGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999 89888765321 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=384.49 Aligned_cols=223 Identities=27% Similarity=0.340 Sum_probs=167.5
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|+.+|||||||||||+.. +...+.||||+|+|+.+|+++.... ..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~--------~~~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC--------CCCceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 4788999999999999842 2345689999999999999865421 012345799999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhcCcEEEEecCCCCCCCCcccC---CCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 302 GGDPADYFNDGTAIGAFH-AVKHGIVVVCSAANSGPELGTVTN---VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
|..........+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||..........
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987331122233334443 457999999999999987776553 35799999985432110000
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
.....+.++.||||||+. ++.+||||+|||+.|.+
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 001135689999999998 99999999999999987
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~ 600 (782)
.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 357 ~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 357 VPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 53221 12789999999999999999999985 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=371.78 Aligned_cols=257 Identities=34% Similarity=0.469 Sum_probs=204.9
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|+|||+|||++||+|.+... ....+.... . ......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--~---------~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--N---------GRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--c---------CCCCCCCC
Confidence 8999999999999999999986411 111111000 0 23456678
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC----CCeEEEEc
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD----GVDVISVS 300 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~----g~dVIn~S 300 (782)
.+|||||||+|+|...+. ...+.||||+|+|+.+|+++.. +.+...++++||+|+++. +++|||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~---~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S 113 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS---GSGSESDIIAGIDWVVENNEKYNIRVVNLS 113 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCC---CCccHHHHHHHHHHHHhhccccCceEEEec
Confidence 899999999999985321 3446999999999999999876 467888999999999998 99999999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC--cccCCCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 301 LGGDPA-DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG--TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 301 lG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 114 LGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 998832 456678888899999999999999999997765 34446789999998654320
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
....++.||++||+. ++++||||+|||.+|++
T Consensus 176 ----------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~ 207 (264)
T cd07487 176 ----------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVS 207 (264)
T ss_pred ----------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEe
Confidence 002478899999988 89999999999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
+.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 208 ~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 208 CRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 8664311 11122347899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=365.53 Aligned_cols=233 Identities=33% Similarity=0.471 Sum_probs=195.0
Q ss_pred ccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccC
Q 048642 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNF 217 (782)
Q Consensus 138 ~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (782)
+|..+.+|+||+|||||+||+++||+|.++ +...+.+..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~--------------- 55 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVG--------------- 55 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCC---------------
Confidence 777889999999999999999999999754 111222211
Q ss_pred CCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC-----
Q 048642 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD----- 292 (782)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~----- 292 (782)
.....|..+|||||||||++.. .||||+|+|+.+|+++.. +....+.++++|+++++.
T Consensus 56 ~~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~---~~~~~~~~~~ai~~~~~~~~~~~ 118 (255)
T cd04077 56 GDPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN---GSGTLSGIIAGLEWVANDATKRG 118 (255)
T ss_pred CCCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC---CCcCHHHHHHHHHHHHhcccccC
Confidence 1125678899999999999874 689999999999999876 457788999999999987
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+||+++.+
T Consensus 119 ~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~-------------- 180 (255)
T cd04077 119 KPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD-------------- 180 (255)
T ss_pred CCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------
Confidence 4899999999873 45677778889999999999999999765 3444567899999985432
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
+.++.||++||.. ||+||
T Consensus 181 ------------------------------------------------------~~~~~~S~~g~~~--------~i~ap 198 (255)
T cd04077 181 ------------------------------------------------------DARASFSNYGSCV--------DIFAP 198 (255)
T ss_pred ------------------------------------------------------CCccCcccCCCCC--------cEEeC
Confidence 3578899999987 99999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 599 (782)
|.+|+++.... ...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 199 G~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 199 GVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999988742 1288999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=363.49 Aligned_cols=242 Identities=34% Similarity=0.426 Sum_probs=203.2
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+ +|+||+|||||+|||++||+|... ++...+++.+
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~------------ 59 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVD------------ 59 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccC------------
Confidence 56889988 999999999999999999998432 2222223321
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. +.+...+++++|+++++.++
T Consensus 60 --~~~~~~d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 60 --NDSDAMDDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDAN---GSGSLADIANGIRYAADKGA 126 (260)
T ss_pred --CCCCCCCCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCC---CCcCHHHHHHHHHHHHHCCC
Confidence 1224567889999999999987422 2345899999999999999876 46788899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 127 ~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------- 186 (260)
T cd07484 127 KVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------- 186 (260)
T ss_pred eEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------
Confidence 99999999873 4556777777888999999999999998877788888999999985421
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+..+.||++|+.. |++|||.+
T Consensus 187 ---------------------------------------------------~~~~~~s~~g~~~--------~~~apG~~ 207 (260)
T cd07484 187 ---------------------------------------------------DKRASFSNYGKWV--------DVSAPGGG 207 (260)
T ss_pred ---------------------------------------------------CCcCCcCCCCCCc--------eEEeCCCC
Confidence 3567899999876 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 600 (782)
|+++.+.. .|..++|||||||+|||++|||++++| +++++||++|++||+++
T Consensus 208 i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 208 ILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99987663 889999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=371.61 Aligned_cols=266 Identities=23% Similarity=0.228 Sum_probs=188.1
Q ss_pred EEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCcc
Q 048642 149 IIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHG 228 (782)
Q Consensus 149 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 228 (782)
+|||||||||.+||+|.+. +.....+.. ......|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~--------------~~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSD--------------EPGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hcccccccc--------------CCCCcCCCCCCh
Confidence 7999999999999999753 111111110 011156899999
Q ss_pred chhhhhhhccCCCCccccccCCCcceecCccccccccccccCCC-CCCCCChhHHHHHHHHhhhCC---CeEEEEccCCC
Q 048642 229 THTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV-SDGQCFDADILKGFDMAIHDG---VDVISVSLGGD 304 (782)
Q Consensus 229 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~-~~g~~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 304 (782)
|||||||++.... .....|+||+|+|+.+|++...+ ..+.....++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 9999999976421 23458999999999999998762 112356778999999999853 59999999998
Q ss_pred CCCCC--CCHHHHHHHH-HHhcCcEEEEecCCCCCCCCcc------------cCCCCcEEEEccccCCccceeeEEecCC
Q 048642 305 PADYF--NDGTAIGAFH-AVKHGIVVVCSAANSGPELGTV------------TNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 305 ~~~~~--~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
..... ...+..++.+ +.++|++||+||||++...... +..++++|+|||++...........
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--- 190 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--- 190 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---
Confidence 32211 1245555543 5689999999999999765432 2346799999997654321000000
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
+.......+.||+|||.. ++.+||||+
T Consensus 191 ---------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ 217 (291)
T cd04847 191 ---------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVV 217 (291)
T ss_pred ---------------------------------------------------cccccccCCCccccCCCC--CCCcCCcEE
Confidence 000011233499999988 899999999
Q ss_pred eCCceEEEeecCCCCC-----CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 530 APGVNIIAAFTGAIGA-----TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 530 APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
|||++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 218 apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 218 AFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999998865431100 00001122348999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=360.83 Aligned_cols=253 Identities=33% Similarity=0.409 Sum_probs=188.0
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||+|||++||+|.+. +.....|..+.. . ......|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~~------~----~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENRR------I----SATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCCC------C----CCCCCCCCCC
Confidence 799999999999999999754 222222221100 0 2234567889
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||+|+.. ++...||||+|+|+.+|++... .+..++++++|+|+++.+++|||||||....
T Consensus 45 HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~----~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~ 111 (254)
T cd07490 45 HGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDG----GGSLSQIIAGMEWAVEKDADVVSMSLGGTYY 111 (254)
T ss_pred cHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCC----CCcHHHHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 99999999999852 3345799999999999999876 3788999999999999999999999998743
Q ss_pred CCCCCHHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCc
Q 048642 307 DYFNDGTAIGAFHAVK-HGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDT 385 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 385 (782)
. .+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 112 ~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------- 170 (254)
T cd07490 112 S--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------- 170 (254)
T ss_pred C--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC-------------------
Confidence 2 5566655555554 69999999999998766666678999999997643210000000
Q ss_pred ccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCc
Q 048642 386 FYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHF 465 (782)
Q Consensus 386 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 465 (782)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCC
Q 048642 466 LPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGA 545 (782)
Q Consensus 466 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 545 (782)
.......++.+|.. .....||||+|||.+|+++....
T Consensus 171 ---------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~--- 207 (254)
T cd07490 171 ---------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA--- 207 (254)
T ss_pred ---------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---
Confidence 00112222333432 25568999999999999865321
Q ss_pred CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 546 TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 546 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
.....|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 208 ------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 ------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11237999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=365.40 Aligned_cols=252 Identities=29% Similarity=0.382 Sum_probs=183.4
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|+++.+|+||+||||||||+..|| |...++ .+ +. .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~--------------~~----~~~~~----------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV--------------RV----VLAPG----------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc--------------ee----ecCCC-----------
Confidence 5689999999999999999999999998 754311 00 00 00000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
......|+.||||||||++ .||||+|+|+.+|+++. ..+.+++||+||+++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~g~ 105 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISLSP 105 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhcCC
Confidence 1224567889999999865 47899999999999753 45678999999999999
Q ss_pred eEEEEccCCCCCCC----------CCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeE
Q 048642 295 DVISVSLGGDPADY----------FNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFV 364 (782)
Q Consensus 295 dVIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~ 364 (782)
+|||||||...... ....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 106 dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---- 178 (298)
T cd07494 106 DIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---- 178 (298)
T ss_pred CEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC----
Confidence 99999999862111 1235777888899999999999999974 457788999999996543200
Q ss_pred EecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCc
Q 048642 365 ELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGA 444 (782)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 444 (782)
..
T Consensus 179 -----~~------------------------------------------------------------------------- 180 (298)
T cd07494 179 -----AR------------------------------------------------------------------------- 180 (298)
T ss_pred -----cc-------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCc
Q 048642 445 VGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEIL 524 (782)
Q Consensus 445 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 524 (782)
......+.|++ . ..+++.
T Consensus 181 ----------------------------------------------------------~~~~~~~~~~s---~-~~~g~~ 198 (298)
T cd07494 181 ----------------------------------------------------------RASSYASGFRS---K-IYPGRQ 198 (298)
T ss_pred ----------------------------------------------------------cccccccCccc---c-cCCCCc
Confidence 00000111221 1 125667
Q ss_pred CCeE----------------EeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 048642 525 KPDI----------------TAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSA 588 (782)
Q Consensus 525 KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ 588 (782)
|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|++++
T Consensus 199 ~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~ 273 (298)
T cd07494 199 VPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPER 273 (298)
T ss_pred cCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 7877 4799998766542100 011124799999999999999999999999999999999
Q ss_pred HHHHHHhccccccC
Q 048642 589 IRSAIMTTARTRDN 602 (782)
Q Consensus 589 ik~~L~~TA~~~~~ 602 (782)
||.+|++||+++..
T Consensus 274 v~~~l~~ta~~~~~ 287 (298)
T cd07494 274 ARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHhCcccCC
Confidence 99999999998743
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.53 Aligned_cols=207 Identities=29% Similarity=0.360 Sum_probs=167.4
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh---------
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI--------- 290 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~--------- 290 (782)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. +...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~----~~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC----GGTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC----CCcHHHHHHHHHHHhccCcCCCcc
Confidence 4557889999999999998532 2345899999999999999876 347889999999998
Q ss_pred -hCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecC
Q 048642 291 -HDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRN 368 (782)
Q Consensus 291 -~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~ 368 (782)
.++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 46799999999987321 45677788889999999999999999765 4455677899999985432
Q ss_pred CeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEE
Q 048642 369 GQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448 (782)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 448 (782)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeE
Q 048642 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDI 528 (782)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (782)
+.++.||++|+.. ||
T Consensus 201 ---------------------------------------------------------~~~~~~S~~g~~v--------di 215 (285)
T cd07496 201 ---------------------------------------------------------GQRASYSNYGPAV--------DV 215 (285)
T ss_pred ---------------------------------------------------------CCcccccCCCCCC--------CE
Confidence 3678899999987 99
Q ss_pred EeCCceEEEeecCCCCCC--CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 529 TAPGVNIIAAFTGAIGAT--ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 529 ~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 216 ~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 216 SAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999998876532110 00111223478999999999999999999999999999999999999986
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=353.53 Aligned_cols=240 Identities=29% Similarity=0.389 Sum_probs=190.1
Q ss_pred eEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 148 IIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 148 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
|+|||||+|||++||+|++. .++...+.+.. ......|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~--------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVS--------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccC--------------CCCCCCCCCCC
Confidence 68999999999999999863 01111111111 11245678999
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC-
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA- 306 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~- 306 (782)
||||||||+|+..+ ...+.||||+|+|+.+|++... +.+...++.++++++++.+++|||||||....
T Consensus 43 GT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~~~---~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 111 (242)
T cd07498 43 GTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIADSL---GYAYWSDIAQAITWAADNGADVISNSWGGSDST 111 (242)
T ss_pred HHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEECCC---CCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC
Confidence 99999999998522 2345899999999999999866 35688899999999999999999999998732
Q ss_pred CCCCCHHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCc
Q 048642 307 DYFNDGTAIGAFHAVK-HGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDT 385 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 385 (782)
......+..++.++.+ +|++||+||||+|......+...+++|+||+++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------- 163 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------- 163 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------
Confidence 2335567777777888 99999999999997766666778999999985431
Q ss_pred ccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCc
Q 048642 386 FYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHF 465 (782)
Q Consensus 386 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 465 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCC
Q 048642 466 LPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGA 545 (782)
Q Consensus 466 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 545 (782)
+.++.||++||.. |++|||.++.+.......
T Consensus 164 ----------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~- 194 (242)
T cd07498 164 ----------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS- 194 (242)
T ss_pred ----------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc-
Confidence 3578999999987 999999999887544211
Q ss_pred CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 546 TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 546 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
..+.....|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 195 ---~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 ---AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ---cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=361.99 Aligned_cols=279 Identities=28% Similarity=0.303 Sum_probs=199.9
Q ss_pred cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC
Q 048642 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 141 ~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (782)
++++|+||+|||||||||++||+|.+.... ......+++.....+ ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~---------------~~~~~~~~~~~~~~~-----------------~~~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN---------------KTNLFHRKIVRYDSL-----------------SDT 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC---------------cCccCcccEEEeecc-----------------CCC
Confidence 578999999999999999999999764210 001112333222211 112
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEc
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVS 300 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~S 300 (782)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|++..... ......+..+++++.+.+++|||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEEecc
Confidence 237899999999999998633211 114699999999999999886621 3567779999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-h-cCcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeEEeee
Q 048642 301 LGGDPADYFNDGTAIGAFHAV-K-HGIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGT 375 (782)
Q Consensus 301 lG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~ 375 (782)
||..... .......++.++. + +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 123 ~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------- 188 (293)
T cd04842 123 WGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------- 188 (293)
T ss_pred CCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------
Confidence 9998432 1233333444333 3 89999999999997654 45556899999999765431000
Q ss_pred eccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC
Q 048642 376 SLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS 455 (782)
Q Consensus 376 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 455 (782)
..|..
T Consensus 189 ------------------------------~~~~~--------------------------------------------- 193 (293)
T cd04842 189 ------------------------------EGGLG--------------------------------------------- 193 (293)
T ss_pred ------------------------------ccccc---------------------------------------------
Confidence 00000
Q ss_pred CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceE
Q 048642 456 GNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNI 535 (782)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 535 (782)
.......++.||++||+. ++++||||+|||++|
T Consensus 194 ---------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i 226 (293)
T cd04842 194 ---------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGI 226 (293)
T ss_pred ---------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCe
Confidence 001135789999999987 899999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 048642 536 IAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH-----P---DWSPSAIRSAIMTTAR 598 (782)
Q Consensus 536 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~~sp~~ik~~L~~TA~ 598 (782)
+++.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 227 ~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 227 LSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred EeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99975530 0111223478999999999999999999999985 4 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=356.10 Aligned_cols=245 Identities=20% Similarity=0.230 Sum_probs=178.3
Q ss_pred CCCccccCC-CCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 135 SSSAWGKGR-FGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 135 ~~~~w~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
+..+|+... .|+||+|+|||+|||.+||+|.++.. .. .
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~~---~------------ 42 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------TL---I------------ 42 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------cc---c------------
Confidence 567898754 59999999999999999999986411 00 0
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh--
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-- 291 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-- 291 (782)
....+.|+.+|||||||||+|.. +...+.||||+|+|+.+|++. .++++++|++|++
T Consensus 43 ---~~~~~~d~~gHGT~VAGiIaa~~---------n~~G~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~~~ 101 (277)
T cd04843 43 ---SGLTDQADSDHGTAVLGIIVAKD---------NGIGVTGIAHGAQAAVVSSTR---------VSNTADAILDAADYL 101 (277)
T ss_pred ---CCCCCCCCCCCcchhheeeeeec---------CCCceeeeccCCEEEEEEecC---------CCCHHHHHHHHHhcc
Confidence 01124578899999999999973 122358999999999999974 2335556666655
Q ss_pred --CCCeEEEEccCCCCCCC------CCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc-------------CCCCcEEE
Q 048642 292 --DGVDVISVSLGGDPADY------FNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT-------------NVSPWIIT 350 (782)
Q Consensus 292 --~g~dVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~vit 350 (782)
.++.+||||||...... ....+..++.++.++|+++|+||||++....... ...+++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 46778999999873211 2234556777888999999999999986421111 12357888
Q ss_pred EccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc
Q 048642 351 VGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT 430 (782)
Q Consensus 351 Vgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 430 (782)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754321
Q ss_pred chhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc
Q 048642 431 ARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510 (782)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (782)
...++.
T Consensus 190 --------------------------------------------------------------------------~~~~~~ 195 (277)
T cd04843 190 --------------------------------------------------------------------------GHTRLA 195 (277)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 013789
Q ss_pred ccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----h-CCCCC
Q 048642 511 FSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----A-HPDWS 585 (782)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s 585 (782)
||++|+.. ||.|||++|+++.+..... ..+.....|..++|||||||||||++|||++ + +|+|+
T Consensus 196 fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt 264 (277)
T cd04843 196 FSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLT 264 (277)
T ss_pred ccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999987 9999999999998764211 0111122457899999999999999999975 3 49999
Q ss_pred HHHHHHHHHhccc
Q 048642 586 PSAIRSAIMTTAR 598 (782)
Q Consensus 586 p~~ik~~L~~TA~ 598 (782)
|+|||++|++|+.
T Consensus 265 ~~~v~~~L~~t~~ 277 (277)
T cd04843 265 PIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999973
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=360.69 Aligned_cols=264 Identities=30% Similarity=0.350 Sum_probs=184.5
Q ss_pred cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC
Q 048642 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 141 ~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (782)
.+++|+||+|||||+|||++||+|.+. .+...+|.+ ...
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~---------------~~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVG---------------GED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCC---------------CCC
Confidence 567999999999999999999999754 111122221 123
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEc
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVS 300 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~S 300 (782)
..|..||||||||||+|+..+ +...||||+|+|+.+|++... +.+....+++||+||++.|++|||||
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~---~~~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGD---GGGGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCC---CCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 567899999999999998532 334799999999999998766 35677789999999999999999999
Q ss_pred cCCCCCCC----------CCCHHHHHHHHH---------------HhcCcEEEEecCCCCCCCCcccC-----CCCcEEE
Q 048642 301 LGGDPADY----------FNDGTAIGAFHA---------------VKHGIVVVCSAANSGPELGTVTN-----VSPWIIT 350 (782)
Q Consensus 301 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~~-----~~p~vit 350 (782)
||...... ....++.....+ .++|++||+||||++........ ..+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99863111 111222222233 67999999999999854332211 1123333
Q ss_pred EccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc
Q 048642 351 VGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT 430 (782)
Q Consensus 351 Vgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 430 (782)
|++....
T Consensus 190 V~~V~~~------------------------------------------------------------------------- 196 (297)
T cd07480 190 VAAVGAL------------------------------------------------------------------------- 196 (297)
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 3332111
Q ss_pred chhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc
Q 048642 431 ARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510 (782)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (782)
+....
T Consensus 197 ---------------------------------------------------------------------------~~~~~ 201 (297)
T cd07480 197 ---------------------------------------------------------------------------GRTGN 201 (297)
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11122
Q ss_pred ccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHH
Q 048642 511 FSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590 (782)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik 590 (782)
|+++.+ ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++
T Consensus 202 ~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~ 264 (297)
T cd07480 202 FSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALA 264 (297)
T ss_pred ccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHH
Confidence 333322 2235789999999999988764 89999999999999999999999999999998888
Q ss_pred HHHHhccccccCCCCCCCCCCCCCCCCCcccccccCcc
Q 048642 591 SAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628 (782)
Q Consensus 591 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~ 628 (782)
.+|++......... .........+|+|++++.
T Consensus 265 ~~l~~~l~~~~~~~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 265 ALLQARLTAARTTQ------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHhhcccCC------CCCCCChhhcCCceeecC
Confidence 88884432210000 011234668999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.69 Aligned_cols=250 Identities=29% Similarity=0.408 Sum_probs=191.5
Q ss_pred CceEEEEecCCcCcCCCCccCCCCCCCCCCcccc---ccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCC
Q 048642 146 EDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGT---CQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTAR 222 (782)
Q Consensus 146 ~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (782)
+||+|||||||||++||+|.+. .|... +..+.+ .+....+.. ..+|+... ...++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~--------~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID---DDGNGYVDD---IYGWNFVN--------NDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc---cCCCCcccC---CCcccccC--------CCCCCC
Confidence 6899999999999999999874 23211 111111 000000000 00111110 234567
Q ss_pred CCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccC
Q 048642 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLG 302 (782)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG 302 (782)
|..+|||||||||+|...+ ...+.||||+|+|+.+|++... +.+...+++++|+++++.+++|||+|||
T Consensus 61 d~~~HGT~va~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGAD---GSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCcHHHHHHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCC---CCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 8899999999999998532 2335899999999999999876 3578899999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC---CcccC--CCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 303 GDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL---GTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 130 ~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 130 GGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred CCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 883 256777888889999999999999998652 22333 35789999975421
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
+.++.||++||. +||+.|||.++++
T Consensus 187 ------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~ 211 (259)
T cd07473 187 ------------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILS 211 (259)
T ss_pred ------------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEe
Confidence 356679999985 3699999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
..+.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 212 ~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 212 TSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 76553 8899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=345.41 Aligned_cols=227 Identities=33% Similarity=0.490 Sum_probs=188.2
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||+||+++||+|.+. +.....|... ......|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~-------------~~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD-------------DNNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC-------------CCCCCCCCCC
Confidence 799999999999999999754 2222223211 1124567889
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||++... ...+.|+||+|+|+.+|+++.. +.+...+++++++++++.+++|||||||..
T Consensus 42 HGT~vA~ii~~~~~---------~~~~~giap~a~i~~~~~~~~~---~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~-- 107 (229)
T cd07477 42 HGTHVAGIIAALDN---------GVGVVGVAPEADLYAVKVLNDD---GSGTYSDIIAGIEWAIENGMDIINMSLGGP-- 107 (229)
T ss_pred CHHHHHHHHhcccC---------CCccEeeCCCCEEEEEEEECCC---CCcCHHHHHHHHHHHHHCCCCEEEECCccC--
Confidence 99999999999852 2255899999999999999876 456778999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCC
Q 048642 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPND 384 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 384 (782)
.....+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 108 -~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 159 (229)
T cd07477 108 -SDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN--------------------------- 159 (229)
T ss_pred -CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------------
Confidence 2344566777788999999999999999776554 6678999999985432
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCC
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPH 464 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 464 (782)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCC
Q 048642 465 FLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544 (782)
Q Consensus 465 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 544 (782)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -----------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-- 188 (229)
T cd07477 160 -----------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-- 188 (229)
T ss_pred -----------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC--
Confidence 3567899999976 9999999999998764
Q ss_pred CCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 545 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -----------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=343.19 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=119.7
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
+++|+|||||||||++||+|+++ +...+.|......... ......|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~~~-------~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDGNK-------VSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCccc-------CCCCCCCC
Confidence 78999999999999999999753 2222233221000000 11123578
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCC---CCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD---GQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~---g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.||||||||||+ |+||+|+|+.+|+++..... ..+....+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999996 45999999999999866311 135677899999999999999999999
Q ss_pred CCCCCC---CCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC-ccc--CCCCcEEEEccccC
Q 048642 302 GGDPAD---YFNDGTAIGAFHAVKHGIVVVCSAANSGPELG-TVT--NVSPWIITVGASTL 356 (782)
Q Consensus 302 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~--~~~p~vitVgas~~ 356 (782)
|..... .....+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 987321 12566788888999999999999999997654 333 35689999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.19 Aligned_cols=222 Identities=23% Similarity=0.282 Sum_probs=174.7
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||||||++||+|.+.- ...+.+..+ ... . +.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~-~~~----~----~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDL-EII----V----VSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------ccccccccc-ccc----c----CCCCCCCCCC
Confidence 7999999999999999998641 111111100 000 0 2335568899
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||++. +|+++|+.+|+++.. +.+..+.+++||+|++++|++|||||||....
T Consensus 46 HGT~vAgiia~~------------------~p~~~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~ 104 (222)
T cd07492 46 HGTACAGIIKKY------------------APEAEIGSIKILGED---GRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104 (222)
T ss_pred cHHHHHHHHHcc------------------CCCCeEEEEEEeCCC---CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 999999999875 699999999999876 46788899999999999999999999998732
Q ss_pred CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcc
Q 048642 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTF 386 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (782)
.....+..++.++.++|+++|+||||++.... .+...+++|+||+....+
T Consensus 105 -~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------- 154 (222)
T cd07492 105 -RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------- 154 (222)
T ss_pred -CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------
Confidence 22345677778888999999999999986433 355678899999743211
Q ss_pred cceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcc
Q 048642 387 YPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFL 466 (782)
Q Consensus 387 ~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 466 (782)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCC
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGAT 546 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 546 (782)
.. +.+++ ++|+.|||.+|+++.+..
T Consensus 155 ----------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~---- 179 (222)
T cd07492 155 ----------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG---- 179 (222)
T ss_pred ----------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC----
Confidence 11 11233 349999999999988764
Q ss_pred CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 547 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 ---------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=353.88 Aligned_cols=274 Identities=32% Similarity=0.472 Sum_probs=206.8
Q ss_pred EEEEecCCcCcCCCCcc-CCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 149 IIANLDTGVWPESKSFS-DEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 149 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
+|||||||||++||+|. .+ + ...++.+.+.|.++. . ......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~------~-----~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN------P-----NPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB------S-----TTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC------C-----CcCccccCCCc
Confidence 69999999999999998 33 0 011122223332221 0 23456688899
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh-hCCCeEEEEccCCCC-
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI-HDGVDVISVSLGGDP- 305 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~- 305 (782)
||||||||+|.. . . ......|+||+|+|+.+|++... ......++++|++++ +++++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~----~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNS----GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp HHHHHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTT----SEEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred cchhhhhccccc-c-c-----ccccccccccccccccccccccc----ccccccccchhhhhhhccCCcccccccccccc
Confidence 999999999985 2 1 23345899999999999998766 367888999999999 899999999999831
Q ss_pred --CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---ccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCC
Q 048642 306 --ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKS 380 (782)
Q Consensus 306 --~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~ 380 (782)
.....+.+..+...+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------ 173 (282)
T PF00082_consen 118 PPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------ 173 (282)
T ss_dssp SSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------------
T ss_pred ccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------------
Confidence 11223345566668889999999999999876553 3334588899997432
Q ss_pred CCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc
Q 048642 381 LPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT 460 (782)
Q Consensus 381 ~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 460 (782)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeec
Q 048642 461 ADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFT 540 (782)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (782)
.+.++.||++|+.. .++++||||+|||.+|+++++
T Consensus 174 --------------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~ 208 (282)
T PF00082_consen 174 --------------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVP 208 (282)
T ss_dssp --------------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEET
T ss_pred --------------------------------------------cccccccccccccc-ccccccccccccccccccccc
Confidence 13568899997543 278999999999999999887
Q ss_pred CCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcc
Q 048642 541 GAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSY 620 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 620 (782)
.... ..|..++|||||||+|||++|||+|++|++++.+||.+|++||.++...+ ....+..|
T Consensus 209 ~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~ 270 (282)
T PF00082_consen 209 GSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSY 270 (282)
T ss_dssp TTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHH
T ss_pred cccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCc
Confidence 6410 26888999999999999999999999999999999999999999886211 23456789
Q ss_pred cccccCccccCC
Q 048642 621 GSGHIRPNRAMD 632 (782)
Q Consensus 621 G~G~vd~~~A~~ 632 (782)
|||+||+.+|++
T Consensus 271 G~G~in~~~a~~ 282 (282)
T PF00082_consen 271 GWGLINAEKALN 282 (282)
T ss_dssp TTSBE-HHHHHH
T ss_pred cCChhCHHHHhC
Confidence 999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=348.57 Aligned_cols=254 Identities=25% Similarity=0.282 Sum_probs=175.7
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
.|+|||||||||++||+|++.-. ...+.+............... +.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-------------------------SYSKNLVPKGGYDGKEAGETG-DINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-------------------------ccccccccCCCcCCccccccC-CCCcCCCCCC
Confidence 38999999999999999985310 000111000000000000000 1234567899
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||+|+|... ..||||+|+|+.+|+++.. +.....+++++|++|++++++|||||||....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~ 119 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSC---GSAESSWIIKAIIDAADDGVDVINLSLGGYLI 119 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCC---CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCC
Confidence 99999999998731 2499999999999999876 34578899999999999999999999998632
Q ss_pred CCC--------CCHHHHHHHHHHhcCcEEEEecCCCCCCCCc----------------------ccCCCCcEEEEccccC
Q 048642 307 DYF--------NDGTAIGAFHAVKHGIVVVCSAANSGPELGT----------------------VTNVSPWIITVGASTL 356 (782)
Q Consensus 307 ~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVgas~~ 356 (782)
... .+.+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~ 199 (294)
T cd07482 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN 199 (294)
T ss_pred CCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC
Confidence 111 1345666677889999999999999864311 1123345555555322
Q ss_pred CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhh
Q 048642 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 436 (782)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCC
Q 048642 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGP 516 (782)
Q Consensus 437 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 516 (782)
.+.++.||++|+
T Consensus 200 --------------------------------------------------------------------~~~~~~~S~~g~ 211 (294)
T cd07482 200 --------------------------------------------------------------------NGNLSSFSNYGN 211 (294)
T ss_pred --------------------------------------------------------------------CCCcCccccCCC
Confidence 246778999987
Q ss_pred CCCCCCCcCCeEEeCCceEEEeecCCCCC---CC------CCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCH-
Q 048642 517 NKITPEILKPDITAPGVNIIAAFTGAIGA---TE------LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSP- 586 (782)
Q Consensus 517 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp- 586 (782)
.. +|++|||+++....+..... .. .......+.|..++|||||||+|||++|||+|++|.+++
T Consensus 212 ~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~ 284 (294)
T cd07482 212 SR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284 (294)
T ss_pred Cc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcH
Confidence 54 49999999985332211100 00 001123457899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 048642 587 SAIRSAIMTT 596 (782)
Q Consensus 587 ~~ik~~L~~T 596 (782)
.|||++|++|
T Consensus 285 ~~v~~~L~~T 294 (294)
T cd07482 285 DEAIRILYNT 294 (294)
T ss_pred HHHHHHHhhC
Confidence 9999999987
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=350.88 Aligned_cols=248 Identities=23% Similarity=0.252 Sum_probs=182.3
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+.+|+||+|+|||||||++||+|.+.... ...+.|..+.
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~---------- 73 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND---------- 73 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC----------
Confidence 678999999999999999999999999999764110 0111222110
Q ss_pred ccCCCCC--CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 215 VNFNNTA--RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 215 ~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
....+ .|..||||||||||+|+..+. ....||||+|+|+.+|++... .....+..++.++.+
T Consensus 74 --~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~- 137 (297)
T cd04059 74 --PDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD- 137 (297)
T ss_pred --CCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-
Confidence 01122 278899999999999985221 134899999999999998754 344455666666554
Q ss_pred CCeEEEEccCCCCCC----CCCCHHHHHHHHHHh-----cCcEEEEecCCCCCCCCc--c--cCCCCcEEEEccccCCcc
Q 048642 293 GVDVISVSLGGDPAD----YFNDGTAIGAFHAVK-----HGIVVVCSAANSGPELGT--V--TNVSPWIITVGASTLDRE 359 (782)
Q Consensus 293 g~dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~p~vitVgas~~~~~ 359 (782)
.++|||||||..... ........++.++.+ +|++||+||||+|..... . ....+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 569999999987321 122334444555543 699999999999973221 1 2346889999985432
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
+.++.||++|+..
T Consensus 216 ------------------------------------------------------------------g~~~~~s~~g~~~- 228 (297)
T cd04059 216 ------------------------------------------------------------------GVRASYSEVGSSV- 228 (297)
T ss_pred ------------------------------------------------------------------CCCcCCCCCCCcE-
Confidence 4678899999987
Q ss_pred CCCCcCCeEEeCCce-------EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 520 TPEILKPDITAPGVN-------IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 520 ~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++
T Consensus 229 -------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~ 291 (297)
T cd04059 229 -------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHI 291 (297)
T ss_pred -------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHH
Confidence 99999987 66665441 0126788999999999999999999999999999999999
Q ss_pred HHhccc
Q 048642 593 IMTTAR 598 (782)
Q Consensus 593 L~~TA~ 598 (782)
|++||+
T Consensus 292 L~~TA~ 297 (297)
T cd04059 292 LALTAR 297 (297)
T ss_pred HHHhcC
Confidence 999984
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=334.50 Aligned_cols=360 Identities=23% Similarity=0.354 Sum_probs=273.1
Q ss_pred CCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCccc------ccccEeEEeccceeeEEEEcCH-----HHHHH
Q 048642 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEK------ARDAIFYSYQNHINGFAATLEE-----EEAAE 98 (782)
Q Consensus 30 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~i~~~y~~~~ng~s~~~~~-----~~~~~ 98 (782)
+..|||+|+..-. ...++..+++.+..... .+...-..|...|.-+.++-.. -++++
T Consensus 49 e~EyIv~F~~y~~------------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP------------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEeccccc------------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 4679999998554 35566777776653321 2334455676777777666543 34799
Q ss_pred HhCCCCeEEEEecccccccc------------ccccccc-cc-------------ccCC-----------cccCCCcccc
Q 048642 99 IAKHPDVVSIFPNKGKKLHT------------TRSWDFM-LL-------------ENNG-----------VIHSSSAWGK 141 (782)
Q Consensus 99 L~~~p~V~~V~~~~~~~~~~------------~~s~~~~-g~-------------~~~~-----------~~~~~~~w~~ 141 (782)
|..+|.|+.|.|.+.+..-. +....++ |. .... ...++.+|.+
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 99999999999987753210 0000000 00 0000 1146889999
Q ss_pred CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCC
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTA 221 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (782)
|+||++|+|||.|||+.-+||.|+.- ..-.+++ +...-
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWT---------------NE~tL 234 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWT---------------NEDTL 234 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCc---------------Ccccc
Confidence 99999999999999999999999742 1111111 12345
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|..||||.|||+|||.. ...|.||+++|+++|||.+. .-..++.+++|+.||+...+||+|+|+
T Consensus 235 dD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~---qVSYTSWFLDAFNYAI~~kidvLNLSI 299 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDA---QVSYTSWFLDAFNYAIATKIDVLNLSI 299 (1033)
T ss_pred ccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccc---eeehhhHHHHHHHHHHhhhcceEeecc
Confidence 678899999999999873 34788999999999999877 246789999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCC--cEEEEccccCCccceeeEEecCCeEEeeeeccC
Q 048642 302 GGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP--WIITVGASTLDREFQNFVELRNGQRFKGTSLSK 379 (782)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p--~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (782)
|++ ++.+.|+-.-+.......|++|.|+||+||-.++..+++. .||.||..+.
T Consensus 300 GGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf----------------------- 354 (1033)
T KOG4266|consen 300 GGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF----------------------- 354 (1033)
T ss_pred CCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc-----------------------
Confidence 998 4667777767778889999999999999999999888764 5677764221
Q ss_pred CCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc
Q 048642 380 SLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459 (782)
Q Consensus 380 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 459 (782)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCC----CCCCCcCCeEEeCCceE
Q 048642 460 TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNK----ITPEILKPDITAPGVNI 535 (782)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I 535 (782)
.+.+|.|||||-+. ...||+||||++-|.+|
T Consensus 355 ---------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v 389 (1033)
T KOG4266|consen 355 ---------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDV 389 (1033)
T ss_pred ---------------------------------------------cchhhhhccCCcceeecCCcccccCCceEeecccc
Confidence 36899999999654 24789999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCCCC
Q 048642 536 IAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTRDNTANPMRDGS 611 (782)
Q Consensus 536 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 611 (782)
....... +...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...+
T Consensus 390 ~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N------- 449 (1033)
T KOG4266|consen 390 MGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN------- 449 (1033)
T ss_pred ccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc-------
Confidence 8765543 778999999999999999999976 3345689999999999999986432
Q ss_pred CCCCCCCcccccccCccccCCC
Q 048642 612 FKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 612 ~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
-+.||+|++|+.++++-
T Consensus 450 -----MfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 450 -----MFEQGAGKLDLLESYQI 466 (1033)
T ss_pred -----hhhccCcchhHHHHHHH
Confidence 47899999999998873
|
|
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=334.28 Aligned_cols=244 Identities=25% Similarity=0.319 Sum_probs=187.0
Q ss_pred CCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCC
Q 048642 144 FGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARD 223 (782)
Q Consensus 144 ~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (782)
+|+||+|+|||+||+++||+|.+.... ...+...... ......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~~~----------~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVNDA----------GYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccccc----------cCCCCCC
Confidence 699999999999999999999864110 0000000000 0124557
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..+|||||||+|+|...+ ....|+||+|+|+.+|+++... ..+....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAG--STFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCC--cccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 889999999999998522 4568999999999999998752 14667889999999999999999999998
Q ss_pred CCCC------------CCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc---------CCCCcEEEEccccCCcccee
Q 048642 304 DPAD------------YFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT---------NVSPWIITVGASTLDREFQN 362 (782)
Q Consensus 304 ~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~p~vitVgas~~~~~~~~ 362 (782)
.... .....+......+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---- 189 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---- 189 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----
Confidence 8421 14455667777888999999999999986543322 2357899999865432
Q ss_pred eEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHc
Q 048642 363 FVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVA 442 (782)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 442 (782)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc--ccCCCCCCCC
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS--FSSAGPNKIT 520 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~ 520 (782)
.... ||++|+..
T Consensus 190 ----------------------------------------------------------------~~~~~~~s~~~~~~-- 203 (267)
T cd04848 190 ----------------------------------------------------------------TIASYSYSNRCGVA-- 203 (267)
T ss_pred ----------------------------------------------------------------Ccccccccccchhh--
Confidence 2223 48888643
Q ss_pred CCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 521 PEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 521 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
..+++.|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 204 ---~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 ---ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ---hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 2347999999999998731 127889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=290.04 Aligned_cols=193 Identities=23% Similarity=0.220 Sum_probs=142.0
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHh--hhCCCeEE
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMA--IHDGVDVI 297 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a--~~~g~dVI 297 (782)
...|..+|||||||||||. .|++|+|+|+..++.. .....+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999997 3567999999766632 2333466778888 66899999
Q ss_pred EEccCCCCCCC------CCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCc-----ccCCCCcEEEEccccCCccceeeEE
Q 048642 298 SVSLGGDPADY------FNDGTAIGAFHAVKH-GIVVVCSAANSGPELGT-----VTNVSPWIITVGASTLDREFQNFVE 365 (782)
Q Consensus 298 n~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~-----~~~~~p~vitVgas~~~~~~~~~~~ 365 (782)
|||||...... ..+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 90 NmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------ 163 (247)
T cd07488 90 NHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------ 163 (247)
T ss_pred EeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC------
Confidence 99999873221 223466666776666 99999999999975322 2335688999998654321
Q ss_pred ecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCce
Q 048642 366 LRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAV 445 (782)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 445 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCC--CCCCCCCCC
Q 048642 446 GMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSA--GPNKITPEI 523 (782)
Q Consensus 446 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~ 523 (782)
....+.||++ +|+. ++.
T Consensus 164 -----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~ 182 (247)
T cd07488 164 -----------------------------------------------------------RFFASDVSNAGSEINS--YGR 182 (247)
T ss_pred -----------------------------------------------------------cceecccccccCCCCC--CCC
Confidence 0123455665 4443 778
Q ss_pred cCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 048642 524 LKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSP------SAIRSAIMTT 596 (782)
Q Consensus 524 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp------~~ik~~L~~T 596 (782)
.||||+|||++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 183 ~~~di~APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 183 RKVLIVAPGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ceeEEEEeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999999999998 322 7889999999999999999999999887764 4567776665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=307.74 Aligned_cols=359 Identities=22% Similarity=0.291 Sum_probs=231.8
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..-|||||||||+|+.-. .....||||+|+|+.+++.+..-.. --+...+.+|+..++++++||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgs-METgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGS-METGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccc-cccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 346999999999999733 2345789999999999997654211 2345678999999999999999999998
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCC---CCcEEEEccccCCccceeeEEecCCeEEeeeeccC
Q 048642 304 DP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNV---SPWIITVGASTLDREFQNFVELRNGQRFKGTSLSK 379 (782)
Q Consensus 304 ~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~---~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (782)
.. -+.....++..-..+.+.|+++|.||||+||...+++.+ ...+|.|||--......
T Consensus 380 ~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~------------------ 441 (1304)
T KOG1114|consen 380 DAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ------------------ 441 (1304)
T ss_pred cCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH------------------
Confidence 73 223334455444445599999999999999998888764 35789999832211000
Q ss_pred CCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc
Q 048642 380 SLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459 (782)
Q Consensus 380 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 459 (782)
..|.+.
T Consensus 442 -----a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 442 -----AEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhhhh---------------------------------------------------------------------
Confidence 000000
Q ss_pred ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEee
Q 048642 460 TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAF 539 (782)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~ 539 (782)
.+-....-.+|||||+. ||.+--.|+|||+.|.+--
T Consensus 448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP 483 (1304)
T KOG1114|consen 448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVP 483 (1304)
T ss_pred ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCc
Confidence 00023577899999998 9999999999999996543
Q ss_pred cCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCC
Q 048642 540 TGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKA 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 615 (782)
.... ..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++++.
T Consensus 484 ~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------ 540 (1304)
T KOG1114|consen 484 QYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------ 540 (1304)
T ss_pred hhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------
Confidence 2221 1567899999999999999999965 467899999999999999998643
Q ss_pred CCCcccccccCccccCCCCccccCCcchhhhhcccCCCCccceeeeccceecccCCC---CCCCCCCCcEEeeccCceEE
Q 048642 616 TPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSA---NLEDFNYPSISVPMISGSVT 692 (782)
Q Consensus 616 ~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~ps~~~~~~~~~~t 692 (782)
.++.||.|+|++.+|.+--. +.-..|.-.++| |..-.|+ +|...- .+-..+- ...
T Consensus 541 d~faqG~GmlqVdkAyEyL~------q~~~~f~~~l~f----~~v~VgN--~~srGIyLRep~~~~~----------p~e 598 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYEYLA------QSDFSFPNALGF----INVNVGN--SCSRGIYLREPTQVCS----------PSE 598 (1304)
T ss_pred chhccCcceeehhHHHHHHH------HhhhcCCcccee----EEEeecc--ccccceEecCCcccCC----------ccc
Confidence 37899999999999986100 000111122222 0001110 121110 0000000 011
Q ss_pred EEEE----EEecCC----CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEc----
Q 048642 693 LSRK----LKNVGS----PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTD---- 760 (782)
Q Consensus 693 ~~~t----v~n~~~----~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~---- 760 (782)
+++- +.|--. ...|.+.+.-...-.+--.|+.+-+ .++.+.|.|+|++.. ...+.++++|.--|
T Consensus 599 ~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~--l~~G~hy~eV~gyD~~~p 674 (1304)
T KOG1114|consen 599 HTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG--LAPGVHYTEVLGYDTANP 674 (1304)
T ss_pred cceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC--CCCCcceEEEEEeecCCc
Confidence 1111 111110 1122222221111123334777776 466789999999875 66677778888654
Q ss_pred -CCcEEEEEEEEEEccc
Q 048642 761 -GKHYVRSPIVVNQAQA 776 (782)
Q Consensus 761 -~~~~v~~P~~~~~~~~ 776 (782)
-++..|||+.|..+.-
T Consensus 675 ~~gplFrIPVTVi~P~~ 691 (1304)
T KOG1114|consen 675 SRGPLFRIPVTVIKPKV 691 (1304)
T ss_pred ccCceEEeeeEEEcccc
Confidence 2689999999876543
|
|
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=272.90 Aligned_cols=197 Identities=36% Similarity=0.504 Sum_probs=158.5
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh-hCCCeEEE
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI-HDGVDVIS 298 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~-~~g~dVIn 298 (782)
...+..+||||||++|++...+ ....|+||+++|+.+|+.... +......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~---------~~~~g~a~~a~i~~~~~~~~~---~~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDGD---GSGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CCCEEeCCCCEEEEEEEecCC---CCcCHHHHHHHHHHHHhccCCCEEE
Confidence 4557889999999999998522 222899999999999998766 2467888999999999 89999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhc-CcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 299 VSLGGDPADYFNDGTAIGAFHAVKH-GIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
||||..... ....+...+.++.++ |+++|+||||.+.... ..+...+++|+||+++...
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999998332 345567777778777 9999999999997765 4566789999999865432
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccc-cccCCCCCCCCCCCcCCeEEeCCc
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMA-SFSSAGPNKITPEILKPDITAPGV 533 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~ 533 (782)
... .++++|+ |||+.|||.
T Consensus 170 ----------------------------------------------------~~~~~~~~~~~--------~~~~~apg~ 189 (241)
T cd00306 170 ----------------------------------------------------TPASPSSNGGA--------GVDIAAPGG 189 (241)
T ss_pred ----------------------------------------------------CccCCcCCCCC--------CceEEeCcC
Confidence 111 4455554 569999999
Q ss_pred eEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 534 NIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 190 ~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 190 DILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99875111 12388999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=245.00 Aligned_cols=274 Identities=31% Similarity=0.424 Sum_probs=199.2
Q ss_pred CCCcccc--CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccc
Q 048642 135 SSSAWGK--GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHN 212 (782)
Q Consensus 135 ~~~~w~~--~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~ 212 (782)
....|.. +.+|+||+|+|||+||+..||+|.+.. ...++|.++
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~--------------------------~~~~~~~~~--------- 173 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA--------------------------VAGGDFVDG--------- 173 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccc--------------------------ccccccccC---------
Confidence 4567887 889999999999999999999998641 001122211
Q ss_pred ccccCCC-CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh
Q 048642 213 ISVNFNN-TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH 291 (782)
Q Consensus 213 ~~~~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~ 291 (782)
... ...|..+|||||+|++++.... +.....|+||+++++.+|++.... |.....+++++|+++++
T Consensus 174 ----~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~--g~~~~~~~~~~i~~~~~ 240 (508)
T COG1404 174 ----DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG--GSGELSDVAEGIEGAAN 240 (508)
T ss_pred ----CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC--CcccHHHHHHHHHHHHh
Confidence 111 2568999999999999984211 123458999999999999998653 36778888999999999
Q ss_pred CC--CeEEEEccCCCCCCCCCCHHHHHHHHHHhcC-cEEEEecCCCCCCCCc----ccCCC--CcEEEEccccCCcccee
Q 048642 292 DG--VDVISVSLGGDPADYFNDGTAIGAFHAVKHG-IVVVCSAANSGPELGT----VTNVS--PWIITVGASTLDREFQN 362 (782)
Q Consensus 292 ~g--~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgas~~~~~~~~ 362 (782)
.+ +++||||+|..........+..++..++..| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 241 ~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------ 314 (508)
T COG1404 241 LGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------ 314 (508)
T ss_pred cCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------
Confidence 99 9999999998512223445666666777777 9999999999866421 11111 35666665321
Q ss_pred eEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHc
Q 048642 363 FVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVA 442 (782)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 442 (782)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCC
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPE 522 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 522 (782)
.+.++.||++|+..
T Consensus 315 --------------------------------------------------------------~~~~~~~s~~g~~~---- 328 (508)
T COG1404 315 --------------------------------------------------------------SDTVASFSNDGSPT---- 328 (508)
T ss_pred --------------------------------------------------------------CCccccccccCCCC----
Confidence 14678899999741
Q ss_pred CcCCeEEeCCceEEE-----eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhc
Q 048642 523 ILKPDITAPGVNIIA-----AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP-DWSPSAIRSAIMTT 596 (782)
Q Consensus 523 ~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~sp~~ik~~L~~T 596 (782)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..+
T Consensus 329 --~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~ 395 (508)
T COG1404 329 --GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTT 395 (508)
T ss_pred --CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhc
Confidence 2299999999988 554431 2499999999999999999999999999 89999999998888
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 597 ARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 597 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
+.. .. .......++.|..+...+..
T Consensus 396 ~~~-~~----------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 396 AGL-TP----------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccc-cc----------CCccccccccCccccccccc
Confidence 763 00 01124456666665555444
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=214.92 Aligned_cols=300 Identities=19% Similarity=0.258 Sum_probs=184.9
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+++|++|++||+|.||||-|||++.+ +|. -..++|... +|.+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n----------------------yna--easydfssn-----dpfp-- 198 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNA--EASYDFSSN-----DPFP-- 198 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCc--eeecccccC-----CCCC--
Confidence 567999999999999999999999999999743 111 112233211 1111
Q ss_pred ccCCCCCCC--CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-
Q 048642 215 VNFNNTARD--HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH- 291 (782)
Q Consensus 215 ~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~- 291 (782)
++...| .+.|||.|||-+++...++ .+| .|||.+.++..+|+++. ....++++|-....+
T Consensus 199 ---yprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmghep 261 (629)
T KOG3526|consen 199 ---YPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHEP 261 (629)
T ss_pred ---CCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCCCC
Confidence 111112 5789999999988876443 344 59999999999999974 466777776444332
Q ss_pred CCCeEEEEccCCCCC-CCCC---CHHHHHHHHHHh-----cCcEEEEecCCCCCC-CCcc--cCCCCcEEEEccccCCcc
Q 048642 292 DGVDVISVSLGGDPA-DYFN---DGTAIGAFHAVK-----HGIVVVCSAANSGPE-LGTV--TNVSPWIITVGASTLDRE 359 (782)
Q Consensus 292 ~g~dVIn~SlG~~~~-~~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~-~~~~--~~~~p~vitVgas~~~~~ 359 (782)
..++|.+-|||.... ...+ ++..+++-+-++ .|-+.|.|+|..|.. .+.. ...+-|.|++-+.-.+.+
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~ 341 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE 341 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc
Confidence 467999999998732 2222 223333333332 456899999988743 1222 223456666654211110
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
.....+.|.
T Consensus 342 -----------------------------------------nahydescs------------------------------ 350 (629)
T KOG3526|consen 342 -----------------------------------------NAHYDESCS------------------------------ 350 (629)
T ss_pred -----------------------------------------cccccchhh------------------------------
Confidence 001112222
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
.-..+.||+-|..+
T Consensus 351 -----------------------------------------------------------------stlastfsng~rnp- 364 (629)
T KOG3526|consen 351 -----------------------------------------------------------------STLASTFSNGGRNP- 364 (629)
T ss_pred -----------------------------------------------------------------HHHHHHhhcCCcCC-
Confidence 11345677766443
Q ss_pred CCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 048642 520 TPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599 (782)
Q Consensus 520 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 599 (782)
+- |+. .+ |-+.......||||.|||-.||+.||.++++|.|+..+++.+-.-|+++
T Consensus 365 -------et---gva--tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskr 420 (629)
T KOG3526|consen 365 -------ET---GVA--TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKR 420 (629)
T ss_pred -------Cc---cee--ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeeccc
Confidence 11 111 11 1112255678999999999999999999999999999999988888766
Q ss_pred ccCCC--CC--CCCCCCCCCCCCcccccccCccccCCCCccccCCcch
Q 048642 600 RDNTA--NP--MRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDD 643 (782)
Q Consensus 600 ~~~~g--~~--~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~ 643 (782)
..-.. .. +.-..-....+..+|+|.+|+.+-+....-+...+.-
T Consensus 421 nslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppr 468 (629)
T KOG3526|consen 421 NSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR 468 (629)
T ss_pred chhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCc
Confidence 32110 00 0011123445678999999998877655545444433
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-17 Score=179.33 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=79.5
Q ss_pred CcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC---CCeEEEEccCCCCCCC---CCCHHHHHHHHHHhcC
Q 048642 251 GTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD---GVDVISVSLGGDPADY---FNDGTAIGAFHAVKHG 324 (782)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~G 324 (782)
..+.||||+|+|+.|++++. ....++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~-------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGT-------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCc-------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 45689999999999999753 245577888888877 9999999999983221 2355777778889999
Q ss_pred cEEEEecCCCCCCCC-----------cccCCCCcEEEEccccCCc
Q 048642 325 IVVVCSAANSGPELG-----------TVTNVSPWIITVGASTLDR 358 (782)
Q Consensus 325 i~vV~AAGN~g~~~~-----------~~~~~~p~vitVgas~~~~ 358 (782)
|+||+|+||+|.... ..+...|+|++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997653 2345689999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-11 Score=116.43 Aligned_cols=117 Identities=30% Similarity=0.359 Sum_probs=90.5
Q ss_pred CcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccC-
Q 048642 384 DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITAD- 462 (782)
Q Consensus 384 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~- 462 (782)
....++++.+ .|...++...+++|||+||+|+.|.+.+|..+++++||.++|++|+..........
T Consensus 25 ~~~~~lv~~g-------------~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAG-------------LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEcc-------------CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 3466777733 35556676778999999999999999999999999999999999987542222111
Q ss_pred CCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCC
Q 048642 463 PHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNK 518 (782)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (782)
...+|+++|+.++|+.|.+++++ .+++.+..+.. ..+.+.++.||||||..
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 44555444444 45667899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=111.39 Aligned_cols=123 Identities=45% Similarity=0.740 Sum_probs=98.7
Q ss_pred EEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc-chhhhhHHHHHc
Q 048642 364 VELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT-ARVDKGRQAAVA 442 (782)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~ 442 (782)
++++|+..+.|++++.... ..+++++.... ........|.+..+...+++||||||+|+.| .+.+|..+++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAA 75 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHc
Confidence 6789999999999996554 45677763221 1234457899888888999999999999999 999999999999
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEE
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGY 492 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (782)
||.|+|++++.............+|.+.|+.++|+.|++|++++.+++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999987643333333567999999999999999999988766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.2e-09 Score=90.47 Aligned_cols=78 Identities=35% Similarity=0.560 Sum_probs=58.1
Q ss_pred eEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCc----ccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEE
Q 048642 32 SYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGST----EKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVS 107 (782)
Q Consensus 32 ~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~ 107 (782)
+|||+|++.... ......+.+++.+++.+. .....++.+.|...||||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998664 234667777777554321 23567899999999999999999999999999999999
Q ss_pred EEeccccccc
Q 048642 108 IFPNKGKKLH 117 (782)
Q Consensus 108 V~~~~~~~~~ 117 (782)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=92.08 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=69.6
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc--cc--cCCCcccEEEEehhhHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE--IT--ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~ 478 (782)
+....|...++...+++|||+|++||.|+|.+|..+++++||.++|++|+...... .. .....||+++|+.++|+.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 44578999998888999999999999999999999999999999999998753111 11 133568999999999999
Q ss_pred HHHHHhc
Q 048642 479 VLDYIKS 485 (782)
Q Consensus 479 l~~~~~~ 485 (782)
|.+.+.+
T Consensus 108 i~~~l~~ 114 (120)
T cd02129 108 IQQTFGD 114 (120)
T ss_pred HHHHhcc
Confidence 9988864
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=94.98 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=74.8
Q ss_pred ccccccCCCCC--CCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc----cCCCcccEEEEehhhH
Q 048642 403 TAASLCKNGAL--DHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT----ADPHFLPASQITYKDG 476 (782)
Q Consensus 403 ~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g 476 (782)
.....|.+... .+.++.|+|+|++||.|+|.+|..+++++||.++|+||+...+.... .....+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34578998776 56789999999999999999999999999999999999986322221 1124689999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 048642 477 VKVLDYIKSSDNPMGYI 493 (782)
Q Consensus 477 ~~l~~~~~~~~~~~~~i 493 (782)
+.|++++..+.+.+++|
T Consensus 122 ~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 122 MEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHcCCcEEEeC
Confidence 99999999987766543
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=93.65 Aligned_cols=88 Identities=26% Similarity=0.328 Sum_probs=72.9
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc---ccc--CCCcccEEEEehhhHHHH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE---ITA--DPHFLPASQITYKDGVKV 479 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 479 (782)
...|.+..+...+++|||+||+||.|.|.+|..+++++||.++|++|+...... ... ....+|+++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 467998888888999999999999999999999999999999999998663211 111 234699999999999999
Q ss_pred HHHHhcCCCceEE
Q 048642 480 LDYIKSSDNPMGY 492 (782)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (782)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999888665443
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=91.60 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC-CCcc---cc----CCCcccEEEEehhhH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS-GNEI---TA----DPHFLPASQITYKDG 476 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~---~~----~~~~~p~~~i~~~~g 476 (782)
...|.+... ..+++|||+|++||.|+|.+|..+++++||.++|+||+... .... .. ....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 56899999999999999999999999999999999998653 1111 12 234799999999999
Q ss_pred HHHHHHHhcCCCceEEEe
Q 048642 477 VKVLDYIKSSDNPMGYIT 494 (782)
Q Consensus 477 ~~l~~~~~~~~~~~~~i~ 494 (782)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877653
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=89.52 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=71.8
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc----cCCCcccEEEEehhhHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT----ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 478 (782)
.....|.+.... .+++|||+||+|+.|.|.+|..+++++||.++|++|+........ .....+|+++|+.++|..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345689888763 469999999999999999999999999999999999876421111 123469999999999999
Q ss_pred HHHHHhcCCCceEE
Q 048642 479 VLDYIKSSDNPMGY 492 (782)
Q Consensus 479 l~~~~~~~~~~~~~ 492 (782)
|++|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987765543
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=87.51 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=69.9
Q ss_pred cccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc--c--ccCCCcccEEEEehhhHHHHHH
Q 048642 406 SLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE--I--TADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 406 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 481 (782)
..|.+..+ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. . ......+|+++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46887655 35799999999999999999999999999999999998732211 1 1123569999999999999999
Q ss_pred HHhcCCCceEE
Q 048642 482 YIKSSDNPMGY 492 (782)
Q Consensus 482 ~~~~~~~~~~~ 492 (782)
.++++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.4e-08 Score=89.88 Aligned_cols=86 Identities=31% Similarity=0.431 Sum_probs=69.3
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC----Cc---ccc-----CCCcccEEEEe
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG----NE---ITA-----DPHFLPASQIT 472 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~----~~---~~~-----~~~~~p~~~i~ 472 (782)
...|.+..+ +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... .. +.. +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999999999999999999999999876531 01 111 23578999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 048642 473 YKDGVKVLDYIKSSDNPMG 491 (782)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~ 491 (782)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=89.65 Aligned_cols=80 Identities=35% Similarity=0.493 Sum_probs=64.6
Q ss_pred cccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC----CCCccccCCCcccEEEEehhhHHHH
Q 048642 404 AASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS----SGNEITADPHFLPASQITYKDGVKV 479 (782)
Q Consensus 404 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 479 (782)
....|........+++||||||+||.|.|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345677778889999999999999999999999999999999999999221 1122334457899999999999999
Q ss_pred HHHH
Q 048642 480 LDYI 483 (782)
Q Consensus 480 ~~~~ 483 (782)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=88.22 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=72.1
Q ss_pred cccccCCCC--CCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc-c-----cCCCcccEEEEehhh
Q 048642 404 AASLCKNGA--LDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI-T-----ADPHFLPASQITYKD 475 (782)
Q Consensus 404 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 475 (782)
....|.... +...+++||||||+|+.|.+.+|..+++++||.|+|++++....... . .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345698877 77889999999999999999999999999999999999987632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 048642 476 GVKVLDYIKSSDNPMG 491 (782)
Q Consensus 476 g~~l~~~~~~~~~~~~ 491 (782)
|..|.+++.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=88.89 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=68.6
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc------cCCCcccEEEEehhhHHH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT------ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 478 (782)
...|.+.. .+++|||+|++||.|+|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 379999999999999999999999999999999999765321111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 048642 479 VLDYIKSSDNPMG 491 (782)
Q Consensus 479 l~~~~~~~~~~~~ 491 (782)
|++++..+...+.
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776544
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=88.04 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=62.0
Q ss_pred CCCCCCccceEEEEeeCCcc-----hhhhhHHHHHcCceEEEEeccCCC-CC--ccccC---CCcccEEEEehhhHHHHH
Q 048642 412 ALDHEKVKGKILVCLRGDTA-----RVDKGRQAAVAGAVGMILCNDKSS-GN--EITAD---PHFLPASQITYKDGVKVL 480 (782)
Q Consensus 412 ~~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~~~~~---~~~~p~~~i~~~~g~~l~ 480 (782)
++.+.+++|||+|++||.|. |.+|.++++++||.++|+||+... +. ....+ ...+|+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45567899999999999999 999999999999999999999731 21 12222 358999999999999999
Q ss_pred HHHhcC
Q 048642 481 DYIKSS 486 (782)
Q Consensus 481 ~~~~~~ 486 (782)
+.+..+
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988654
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-07 Score=83.13 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=61.1
Q ss_pred EEeeccCceEEEEEEEEecCC-CCeEEEEEeC--------CCC----------c-eEEEEecEEEEccCCcEEEEEEEEE
Q 048642 682 ISVPMISGSVTLSRKLKNVGS-PSNYAASVRE--------PLG----------I-SVSVEPKILAFKKIGEEKSFKVTLK 741 (782)
Q Consensus 682 ~~~~~~~~~~t~~~tv~n~~~-~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~vt~~ 741 (782)
|+|++.....+++++|+|.|+ ..+|+++... ..| . .+...|.++++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345666667999999999999 9999998661 111 1 57778899999 8899999999999
Q ss_pred ecCCC--CCCceEEEEEEEEcC-C-cEEEEEEE
Q 048642 742 PKWSG--APDNYRFGELTWTDG-K-HYVRSPIV 770 (782)
Q Consensus 742 ~~~~~--~~~~~~~G~i~~~~~-~-~~v~~P~~ 770 (782)
+++.. ..+.+++|+|.+++. . +.++|||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 85422 447899999999874 4 48999997
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=85.67 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=69.1
Q ss_pred cccccCCCCCC--CC----CccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc-c----------ccCCCcc
Q 048642 404 AASLCKNGALD--HE----KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE-I----------TADPHFL 466 (782)
Q Consensus 404 ~~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~ 466 (782)
+...|.+.... +. ...++|+|++||.|+|.+|..+|+++||.++|++|+.+.... . ......+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 45678876442 22 378899999999999999999999999999999998653111 1 0112368
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEE
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGY 492 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (782)
|+++|+.++|+.|+..+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988766543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=85.49 Aligned_cols=89 Identities=22% Similarity=0.261 Sum_probs=69.2
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc-ccCCCcccEEEEehhhHHHHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI-TADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~ 481 (782)
.....|.+...+..+++|||+|++||.|.|.+|..+++++||.++|+||+....... ......+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 345689977666568999999999999999999999999999999999987543222 222334566666 999999999
Q ss_pred HHhcCCCceEE
Q 048642 482 YIKSSDNPMGY 492 (782)
Q Consensus 482 ~~~~~~~~~~~ 492 (782)
.++.+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99887665443
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.5e-07 Score=83.88 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC-C-ccc----cCCCcccEEEEehhhH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG-N-EIT----ADPHFLPASQITYKDG 476 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-~~~----~~~~~~p~~~i~~~~g 476 (782)
.....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|++|+.... . .+. .....+|+++|+.++|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789766 5588999999999999999999999999999999999876532 1 111 2234799999999999
Q ss_pred HHHHHHHhcC
Q 048642 477 VKVLDYIKSS 486 (782)
Q Consensus 477 ~~l~~~~~~~ 486 (782)
+.|+.++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999877643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=101.09 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=97.8
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
....|..+++|+++.++|.|.|+...||+.... +. ..+..++... ...+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~-----------------------~~~s~d~~~~------~~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YD-----------------------PLGSYDVNRH------DNDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-cC-----------------------cceeEeeecC------CCCcc
Confidence 468999999999999999999999999998753 11 1111121111 00000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-CC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-DG 293 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~g 293 (782)
.-.+......|||-||+-.+....+ ..-..|+++++++..++++... ..+...+...... .-
T Consensus 72 --~~~~~~~~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~-------v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 72 --PRCDGTNENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC-------VSDAVEAPSLGFGPCH 134 (431)
T ss_pred --cccCCCCccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee-------cccceecccccCCCCC
Confidence 1112224588999999999988522 2234789999999999997633 1133333333332 35
Q ss_pred CeEEEEccCCCCC-CC---CCCHHHHHHHH-----HHhcCcEEEEecCCCCCC
Q 048642 294 VDVISVSLGGDPA-DY---FNDGTAIGAFH-----AVKHGIVVVCSAANSGPE 337 (782)
Q Consensus 294 ~dVIn~SlG~~~~-~~---~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~ 337 (782)
++|-+.|||.... .. .......+... ...+|-+.|++.||.|..
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~ 187 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTC 187 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccc
Confidence 7999999998731 11 11222223333 236778999999998744
|
|
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-07 Score=86.05 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=69.6
Q ss_pred ccccCCCCCCC---CCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC-ccccC-----CCcccEEEEehhh
Q 048642 405 ASLCKNGALDH---EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN-EITAD-----PHFLPASQITYKD 475 (782)
Q Consensus 405 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~~~-----~~~~p~~~i~~~~ 475 (782)
...|.+....+ .++.|+|+|++||.|+|.+|..+|+++||.++|++|+..... ....+ ...+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56798777644 889999999999999999999999999999999999865321 22221 3479999999999
Q ss_pred HHHHHHHHhcCCC
Q 048642 476 GVKVLDYIKSSDN 488 (782)
Q Consensus 476 g~~l~~~~~~~~~ 488 (782)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=100.73 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=57.8
Q ss_pred cceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC-eEEEEccCCCC---CCC--CCCHHHHHHHHHHhcCc
Q 048642 252 TAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV-DVISVSLGGDP---ADY--FNDGTAIGAFHAVKHGI 325 (782)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~---~~~--~~~~~~~a~~~a~~~Gi 325 (782)
...-+||+|+|..+-.-. .....+..|+.+-..+=+ -+|-.||+... ... .-+.+......|..+||
T Consensus 287 ~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 345679999999987722 233333333333222111 34445666541 111 23344555567889999
Q ss_pred EEEEecCCCCCCCCc--------ccCCCCcEEEEcc
Q 048642 326 VVVCSAANSGPELGT--------VTNVSPWIITVGA 353 (782)
Q Consensus 326 ~vV~AAGN~g~~~~~--------~~~~~p~vitVga 353 (782)
.+++|+|.+|....+ .+..+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865533 3346899999997
|
|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.8e-06 Score=76.14 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=63.1
Q ss_pred CCCCCCCccceEEEEeeCCc--chhhhhHHHHHcCceEEEEeccCCCCCcc-----c--cCCCcccEEEEehhhHHHHHH
Q 048642 411 GALDHEKVKGKILVCLRGDT--ARVDKGRQAAVAGAVGMILCNDKSSGNEI-----T--ADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 411 ~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~ 481 (782)
.++...+++|||+|++++.+ .+..|..++.++||.++|++|+....... . .....+|++.|+.++|+.|.+
T Consensus 36 ~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~ 115 (127)
T cd04819 36 KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLAR 115 (127)
T ss_pred HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHH
Confidence 34556789999999999999 88999999999999999999876542211 1 223579999999999999999
Q ss_pred HHhcCCC
Q 048642 482 YIKSSDN 488 (782)
Q Consensus 482 ~~~~~~~ 488 (782)
.++.+..
T Consensus 116 ~l~~g~~ 122 (127)
T cd04819 116 VAERNDT 122 (127)
T ss_pred HHhcCCc
Confidence 9987543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=67.29 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=62.1
Q ss_pred CCCCCccceEEEEeeCCc------chhhh-------hHHHHHcCceEEEEeccCCC-------CCccc-cCCCcccEEEE
Q 048642 413 LDHEKVKGKILVCLRGDT------ARVDK-------GRQAAVAGAVGMILCNDKSS-------GNEIT-ADPHFLPASQI 471 (782)
Q Consensus 413 ~~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~i 471 (782)
+...+++|||||+.++.| .|..| ...+.++||.++|++|.... |.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 345689999999999999 88888 69999999999999986422 21111 22346999999
Q ss_pred ehhhHHHHHHHHhcCCCceE
Q 048642 472 TYKDGVKVLDYIKSSDNPMG 491 (782)
Q Consensus 472 ~~~~g~~l~~~~~~~~~~~~ 491 (782)
+.+++..|...++.+..+..
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765544
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0023 Score=59.87 Aligned_cols=63 Identities=27% Similarity=0.256 Sum_probs=50.6
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc------------------chhhhhHHHHHcCceE
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT------------------ARVDKGRQAAVAGAVG 446 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g 446 (782)
...|+++.+... ....|...++...|++|||||+.++.| .+..|..++.++||.|
T Consensus 20 ~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 356777654321 234688889999999999999999877 4678999999999999
Q ss_pred EEEeccCC
Q 048642 447 MILCNDKS 454 (782)
Q Consensus 447 ~i~~n~~~ 454 (782)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0022 Score=62.54 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=56.5
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC------------------CCcccc---------------
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS------------------GNEITA--------------- 461 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------------------~~~~~~--------------- 461 (782)
..+++|||+|+++|.|.+.+|..+|+++||.|+|+|++... |+.+..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 56899999999999999999999999999999999998421 110000
Q ss_pred -CCCcccEEEEehhhHHHHHHHHhc
Q 048642 462 -DPHFLPASQITYKDGVKVLDYIKS 485 (782)
Q Consensus 462 -~~~~~p~~~i~~~~g~~l~~~~~~ 485 (782)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013589999999999999998753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0045 Score=67.26 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=67.6
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC------CCccccCCCcccEEEEehhhHHHHHHHHhcCCC
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS------GNEITADPHFLPASQITYKDGVKVLDYIKSSDN 488 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 488 (782)
...+++|+++..||.|.|.+|.+.++++||.++++.|+... ++........||+++|..++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45789999999999999999999999999999999998542 233344456899999999999999987777777
Q ss_pred ceEEEecC
Q 048642 489 PMGYITSP 496 (782)
Q Consensus 489 ~~~~i~~~ 496 (782)
.++.+..+
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66666544
|
|
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.004 Score=57.89 Aligned_cols=50 Identities=40% Similarity=0.464 Sum_probs=43.7
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcc------------hhhhhHHHHHcCceEEEEeccCC
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTA------------RVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
...|...++...+++|||||+.++.|. +..|..++.++||.++|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356888888889999999999998873 66899999999999999999855
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0066 Score=57.50 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=43.0
Q ss_pred ccccCCCCCCCCCccceEEEEeeCC------------------cchhhhhHHHHHcCceEEEEeccCC
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGD------------------TARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
...|...++...+++|||||+.|+. |.+..|..++.+.||.++|++++..
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3557777888899999999998874 5678899999999999999999865
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=45.94 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=60.9
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEcCCcEEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRS 767 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~~~~~v~~ 767 (782)
...+.+++|+|.+. ...|++.........++++|..-.+ ++|++.++.|++.+.. .. +.+.+.|...-.+..+.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CC-ceEEEEEEEEECCeEEEE
Confidence 56778889999999 9999998755345567788877666 7899999999999643 33 345788888665568888
Q ss_pred EEEEE
Q 048642 768 PIVVN 772 (782)
Q Consensus 768 P~~~~ 772 (782)
|+-..
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88654
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.043 Score=45.99 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=39.9
Q ss_pred ceEEEEEEEEecCC-C-CeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCce
Q 048642 689 GSVTLSRKLKNVGS-P-SNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNY 751 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 751 (782)
...+++++|+|.|. . ...++++..|.|-.+...|..+.-.++|++.+++++|+++.....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 57889999999997 4 568889999999888888888765589999999999998764444544
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.015 Score=58.64 Aligned_cols=48 Identities=33% Similarity=0.438 Sum_probs=41.0
Q ss_pred ccCCCCCC-----CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 407 LCKNGALD-----HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 407 ~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.|...+++ ..+++|||||+++|.+.+..|..+|+++||.|+|+|++..
T Consensus 54 yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 54 YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 45554443 6789999999999999889999999999999999999864
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.015 Score=54.33 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 416 EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 416 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.+++|||+|++.|...+..|.++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999998854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.021 Score=52.70 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=67.5
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc------c----cCCCcccEEEEe
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI------T----ADPHFLPASQIT 472 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~------~----~~~~~~p~~~i~ 472 (782)
.....|.... +..+..|.+.|++||+|+|..|..++.++||.++|+.++....... + .+...+|+..+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3456776542 2346788999999999999999999999999999998876543221 2 234689999999
Q ss_pred hhhHHHHHHHHhcCCCceEEEec
Q 048642 473 YKDGVKVLDYIKSSDNPMGYITS 495 (782)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~i~~ 495 (782)
..+|..+..-++.-...-+.|.-
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ccceEEEehhHHHhCCccEEEec
Confidence 88888777666655554444443
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=55.80 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred cccCCCCC---CCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcccc----CCCcccEEEEehhhHHH
Q 048642 406 SLCKNGAL---DHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITA----DPHFLPASQITYKDGVK 478 (782)
Q Consensus 406 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 478 (782)
.+|++... ....-...++|+.||+|+|.+|..+|+++|..++|+||+....+.... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 134556689999999999999999999999999999998776543322 23468999999999999
Q ss_pred HHHHHhc
Q 048642 479 VLDYIKS 485 (782)
Q Consensus 479 l~~~~~~ 485 (782)
|..|...
T Consensus 143 l~~~~~~ 149 (348)
T KOG4628|consen 143 LSSYAGR 149 (348)
T ss_pred HHHhhcc
Confidence 9887544
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=90.57 E-value=4.6 Score=36.60 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred eEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 690 SVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 690 ~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
.-.++++|.|.+. +.+|++++..++|+.+......+++ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 5678899999999 9999999999889998655588888 7899999999998876
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.49 Score=45.26 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCCCCCccceEEEEeeCCcch-------------------hhhhHHHHHcCceEEEEeccCC
Q 048642 411 GALDHEKVKGKILVCLRGDTAR-------------------VDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 411 ~~~~~~~~~gkivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.++...|++||||++.+++..+ ..|...+.+.||.|+|++++..
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4677889999999999765432 2499999999999999997643
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=87.69 E-value=7.4 Score=35.56 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=48.8
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeC----CCC----------c----------eEEEEecEEEEccCCcEEEEEEEEEec
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVRE----PLG----------I----------SVSVEPKILAFKKIGEEKSFKVTLKPK 743 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~----~~g----------~----------~v~v~p~~~~~~~~~~~~~~~vt~~~~ 743 (782)
...+++++|+|.++ ..+|.+++.. ..| . -+++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 68899999999998 8999987642 111 0 0223 445888 789999999999987
Q ss_pred CCCCCCceEEEEEEEE
Q 048642 744 WSGAPDNYRFGELTWT 759 (782)
Q Consensus 744 ~~~~~~~~~~G~i~~~ 759 (782)
. ..-.+.+-|.|.++
T Consensus 105 ~-~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 K-KAFDGIILGGIYFS 119 (121)
T ss_pred C-CCcCCEEEeeEEEE
Confidence 6 44455566777775
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=3.3 Score=45.73 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=57.9
Q ss_pred ceEEEEEEEEecCC-C-CeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEc
Q 048642 689 GSVTLSRKLKNVGS-P-SNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTD 760 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~ 760 (782)
.+.++...+.|.|+ + ..-++++..|+|-++.|+|.++-..++|++.++++|++++....++.| +-+|.-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEee
Confidence 57889999999998 4 567899999999999999998766689999999999999875666666 44555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 782 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-129 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-105 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 1e-13 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 1e-10 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-09 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 9e-08 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 5e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 6e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-06 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 7e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 7e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 8e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 8e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 8e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 9e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 9e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 1e-05 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 1e-05 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 1e-05 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-05 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-05 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 1e-05 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 2e-05 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 2e-05 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 2e-05 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 2e-05 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 2e-05 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-05 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-05 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-05 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 3e-05 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 4e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 4e-05 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 5e-05 | ||
| 3a3p_A | 329 | Crystal Structure Of Complex Between E201aSA-Subtil | 5e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 7e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 7e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 7e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 9e-05 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 1e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 1e-04 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 1e-04 | ||
| 2z2y_A | 318 | Crystal Structure Of Autoprocessed Form Of Tk-Subti | 1e-04 | ||
| 2z2x_A | 318 | Crystal Structure Of Mature Form Of Tk-Subtilisin L | 1e-04 | ||
| 2z56_A | 318 | Crystal Structure Of G56s-Propeptide:s324a-Subtilis | 2e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 2e-04 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 2e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 2e-04 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 2e-04 | ||
| 2zrq_A | 329 | Crystal Structure Of S324a-Subtilisin Length = 329 | 2e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 5e-04 | ||
| 3lxu_X | 1354 | Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I | 6e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 7e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 7e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 8e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 8e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 8e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin And Tk-Propeptide Length = 329 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin Length = 318 | Back alignment and structure |
|
| >pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin Complex Length = 318 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin Length = 329 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 242/667 (36%), Positives = 353/667 (52%), Gaps = 36/667 (5%)
Query: 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177
TT + DF+ + SS W G+D+I+A LD+G+WPES SF D+G +P RWK
Sbjct: 1 TTHTSDFL-----KLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 178 GTCQNSTK-EGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAG 236
G C+ T+ CNRKLIGA YFN+ A NI++N +ARD +GHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMN---SARDTDGHGTHCASITA 112
Query: 237 GNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDV 296
GN GV+ FG GTA+G +P+AR+A YK + F +D++ D A+ DGVD+
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN----EGTFTSDLIAAMDQAVADGVDM 168
Query: 297 ISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356
IS+S G + D +I +F A+ G++V SA N GP +G++ N SPWI+ V +
Sbjct: 169 ISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228
Query: 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHE 416
DR F + L NG + +G SL + P+I ++++ E
Sbjct: 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEE--------LLSQVE 280
Query: 417 KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDG 476
+ I++C D+ R A I ++ + P + K+G
Sbjct: 281 NPENTIVICDDNGDFS-DQMRIITRARLKAAIFISE--DPGVFRSATFPNPGVVVNKKEG 337
Query: 477 VKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNII 536
+V++Y+K+S P IT TYL+ KP+P +A+ S+ GP++ I KPDI APGV I+
Sbjct: 338 KQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLIL 397
Query: 537 AAFTGAIGATELPYDTRR-IPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMT 595
AA+ + AT + + Y + SGTSM+ PH AG+ +LK AHP+WSPSAIRSA+MT
Sbjct: 398 AAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMT 457
Query: 596 TARTRDNTANPMRDGSFKK-ATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYN 654
TA DNT P++D K ATP G+GH+ PNRA+DPGLVYD + DY++ LCS+ +
Sbjct: 458 TADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFT 517
Query: 655 QTTIKRFFGTQYECSKSANLEDFNYPSISV------PMISGSVTLSRKLKNVGSP-SNYA 707
+ K + + S D NYPS R + NVG + Y
Sbjct: 518 EEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYK 577
Query: 708 ASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT--DGKHYV 765
A ++ P ++SV P+IL FK E++S+ +T++ + G +TW +G H V
Sbjct: 578 AKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGD-EGQSRNVGSITWVEQNGNHSV 636
Query: 766 RSPIVVN 772
RSPIV +
Sbjct: 637 RSPIVTS 643
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 695 bits (1794), Expect = 0.0
Identities = 263/662 (39%), Positives = 374/662 (56%), Gaps = 51/662 (7%)
Query: 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177
TTRSWDF+ + + + +I++ LDTG+WPES SF DEG+ P P +WK
Sbjct: 1 TTRSWDFLGF-------PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 178 GTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG 237
GTC+ S RCNRK+IGAR ++ N RD GHGTHT STA G
Sbjct: 54 GTCETS--NNFRCNRKIIGARSYHIGRPISPGDVN-------GPRDTNGHGTHTASTAAG 104
Query: 238 NLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVI 297
LV N++G+G GTA+GG P AR+AAYKVCW C D DIL +D AI DGVD+I
Sbjct: 105 GLVSQANLYGLGLGTARGGVPLARIAAYKVCWN----DGCSDTDILAAYDDAIADGVDII 160
Query: 298 SVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356
S+S+GG P YF D AIG+FHAV+ GI+ SA N GP T ++SPW+++V AST+
Sbjct: 161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220
Query: 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHE 416
DR+F V++ NGQ F+G S+ + ++ +YPL++G D + + C + +++
Sbjct: 221 DRKFVTQVQIGNGQSFQGVSI--NTFDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPN 278
Query: 417 KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDG 476
+KGKI+VC ++ GA G+++ + AD + LP+S + D
Sbjct: 279 LLKGKIVVCEASFG---PHEFFKSLDGAAGVLMTS----NTRDYADSYPLPSSVLDPNDL 331
Query: 477 VKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNII 536
+ L YI S +P I ST + +P + SFSS GPN+ T +++KPDI+ PGV I+
Sbjct: 332 LATLRYIYSIRSPGATI-FKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEIL 390
Query: 537 AAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
AA+ R +NI+SGTSMSCPH+ G+ +KT +P WSP+AI+SA+MTT
Sbjct: 391 AAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447
Query: 597 ARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQT 656
A + NP F+YGSGH+ P +A+ PGLVYD +E DY+ FLC GYN
Sbjct: 448 ASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQ 499
Query: 657 TIKRFFGTQYECS--KSANLEDFNYPSISV---PMISGSVTLSRKLKNVGSP-SNYAASV 710
++R G C+ + + D NYPS + P + + +R L +V S Y A +
Sbjct: 500 AVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMI 559
Query: 711 REPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIV 770
P G+++SV P +L+F +G+ KSF +T++ G L W+DG HYVRSPI
Sbjct: 560 SAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKG---FVVSASLVWSDGVHYVRSPIT 616
Query: 771 VN 772
+
Sbjct: 617 IT 618
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 513 bits (1321), Expect = e-170
Identities = 119/646 (18%), Positives = 219/646 (33%), Gaps = 77/646 (11%)
Query: 130 NGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKE--- 186
N + K G ++A +D G +++ + K + + KE
Sbjct: 1 NDPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGI 60
Query: 187 --GVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
G N K+ +++ + + HGTH GN
Sbjct: 61 TYGEWVNDKVAYYHDYSK---------------DGKTAVDQEHGTHVSGILSGN----AP 101
Query: 245 VFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD 304
+G P+A++ +V + + + + AI+ G VI++S G
Sbjct: 102 SETKEPYRLEGAMPEAQLLLMRVEIV--NGLADYARNYAQAIRDAINLGAKVINMSFGNA 159
Query: 305 --PADYFNDGTAIGAFHAVKHGIVVVCSAANSGPE---LGTVTNVSPWIITVGA-STLDR 358
D T +A G+ +V SA N P VG + D
Sbjct: 160 ALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADS 219
Query: 359 EFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKV 418
+ Q + + + D P+++ + + A D A + D + V
Sbjct: 220 TLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDV 279
Query: 419 KGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT-ADPHFLPASQITYKDGV 477
KGKI + RGD DK +A AGAVG+++ +++ G I + +PA+ I+ KDG+
Sbjct: 280 KGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGL 339
Query: 478 KVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537
+ D + + + L ++ FSS G +KPDI APG +I++
Sbjct: 340 LLKDNPQKTIT----FNATPKVLPTASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILS 393
Query: 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
+ Y +SGTSMS P VAG++GLL+ + P S + A
Sbjct: 394 SVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLA 440
Query: 598 RTR-DNTANPMRDGSFKK-ATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQ 655
+ ++A + D K +P G+G + +A + +++ D +
Sbjct: 441 KKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVS 498
Query: 656 TTIKRFFGTQYECSKSANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLG 715
+ + K L + + + L+ K+ S
Sbjct: 499 DKFEVTVNVHNKSDKPQEL-YYQATVQTDKVDGKHFALAPKVLYETSWQ----------- 546
Query: 716 ISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDG 761
+++ K V + + + +G
Sbjct: 547 -KITIPA--------NSSKQVTVPIDASRFSKDLLAQMKNGYFLEG 583
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-30
Identities = 70/438 (15%), Positives = 133/438 (30%), Gaps = 80/438 (18%)
Query: 213 ISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV 272
++ HGTH T N G+ G + A + KV
Sbjct: 51 SGTGNWYQPGNNNAHGTHVAGTIAAI----ANNEGVV-GVM--PNQNANIHIVKVF---N 100
Query: 273 SDGQCFDADILKGFDMAI-HDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSA 331
G + + ++ D + G +V+++SLGG + A+ +G++++ +A
Sbjct: 101 EAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTER-NALNT--HYNNGVLLIAAA 157
Query: 332 ANSGPELGTVTNVSP----WIITVGASTLDREFQNF------VELRNGQRFKGTSLSKSL 381
N+G + P +++V A + + F VE+ G ++ ++
Sbjct: 158 GNAGDS----SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG----PGEAILSTV 209
Query: 382 PNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAV 441
+ + + + I G A +
Sbjct: 210 TVGEGRLADITIGG-QSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFS 268
Query: 442 AGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDY-IKSSDNPMGYITSPSTYL 500
G + +C + GN+ ++ P ++ Y + +
Sbjct: 269 CGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSD 328
Query: 501 NAKPS------PFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRR 554
PS +A + G + ++ G
Sbjct: 329 ITVPSVSVDRATGLALKAKLGQS--------TTVSNQGNQ-------------------- 360
Query: 555 IPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614
Y +GTSM+ PHV+GV L+ + HP+ S S +R+A+ TA RD
Sbjct: 361 -DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG---RD----- 411
Query: 615 ATPFSYGSGHIRPNRAMD 632
G G I A
Sbjct: 412 ---NQTGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 71/291 (24%), Positives = 105/291 (36%), Gaps = 70/291 (24%)
Query: 82 NHINGFAATLEEEEAAEIA-----------KHPDVVSIFPNKGKKLHTTRSWDFMLLENN 130
+ I A ++ ++ IA + V I + K+ + L E+
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVE-TEG--LDESA 123
Query: 131 GVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRC 190
+ +++ W G G I I +DTG+
Sbjct: 124 AQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------------ 159
Query: 191 NRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGN 250
K+IG F VN T D GHGTH S A G N
Sbjct: 160 --KVIGWVDF--------------VNGKTTPYDDNGHGTHVASIAAGT-------GAASN 196
Query: 251 GTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI----HDGVDVISVSLGGDPA 306
G KG +P A++ KV G +DI+ G D A+ G+ VI++SLG +
Sbjct: 197 GKYKGMAPGAKLVGIKVL---NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQS 253
Query: 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGAST 355
D + +A G+VVV +A NSGP TV + + +ITVGA
Sbjct: 254 SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVD 304
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ FSS GP LKP++ APG IIAA + D Y GT+M+
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG+ LL AHP W+P +++A++ TA + +YG+G +
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA----------DIVKPDEIADIAYGAGRVNA 412
Query: 628 NRAMDPGLVYDLSEDDYL 645
+A L+ Y+
Sbjct: 413 YKAAYYDNYAKLTFTGYV 430
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 497 STYLNAKPSPFMASFSSAGP----NKITPEILKPDITAPGVNIIAAFTGAIGATELPYDT 552
+ + +A +SS G + +I+APG ++ + +
Sbjct: 192 LENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG---------- 241
Query: 553 RRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANP 606
YN +SGTSM+ PHV+G+ + +P S + +RS + A++ D
Sbjct: 242 ---GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY 292
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 52/235 (22%), Positives = 78/235 (33%), Gaps = 58/235 (24%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
I+++ G I IA LDTGV +
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN-------------------------- 46
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
+ + F + NN+ D GHGTH TA + G +
Sbjct: 47 NVEQCKDFT----------GATTPINNSCTDRNGHGTHVAGTALAD--------GGSDQA 88
Query: 253 A-KGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV-----DVISVSLGGDPA 306
G +P A + AYKV + G + DI A +IS+SLG
Sbjct: 89 GIYGVAPDADLWAYKVL---LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN 145
Query: 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTLDRE 359
+ +A+ A G+++V +A NSG GT+ P I V A ++
Sbjct: 146 NSLIS-SAVNY--AYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ 197
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 31/167 (18%)
Query: 485 SSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544
+ +P + + + +++S P + APG I + +
Sbjct: 398 AYVSPQMMEAEYAMREKLPGN--VYTWTSRDPCIDG--GQGVTVCAPGGAIASVPQFTMS 453
Query: 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGL----LKTAHPDWSPSAIRSAIMTTARTR 600
+M+GTSM+ PHVAG V L LK + ++SP +I+ AI TA
Sbjct: 454 K-----------SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKL 502
Query: 601 DNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDF 647
PF+ G G + +A + + S+D+ L F
Sbjct: 503 GY------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRF 537
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 1e-20
Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT-AKGGSPKARVAAYKVC---WP 270
N HGTH S A GN + G +P A++ + +
Sbjct: 260 GNVLEVVGMSSPHGTHVSSIASGN----------HSSRDVDGVAPNAKIVSMTIGDGRLG 309
Query: 271 QVSDGQCFDADILKGFDMAI-HDGVDVISVSLGGDPADYFNDGTAIGAFHAV-KHGIVVV 328
+ G + K ++ +DVI++S G + V K+G+V V
Sbjct: 310 SMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWV 369
Query: 329 CSAANSGPELGTVTN----VSPWIITVGAST 355
SA N GP L TV P +I VGA
Sbjct: 370 ASAGNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFSS GP + D+ APGV+I + G Y +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG L+ + HP+W+ + +RS++ T K F YG G I
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTT--------------KLGDSFYYGKGLINV 270
Query: 628 NRAMD 632
A
Sbjct: 271 QAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 54/237 (22%), Positives = 82/237 (34%), Gaps = 64/237 (27%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSD-EGYGPVPSRWKGTCQNSTKEGVRCN 191
I + + +G G ++ +A +D+G+ G VPS
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSE---------------- 54
Query: 192 RKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNG 251
N +D+ HGTH T N
Sbjct: 55 --------------------------TNPFQDNNSHGTHVAGTVAAL----------NNS 78
Query: 252 TA-KGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFN 310
G +P A + A KV +DG + I+ G + AI + +DVI++SLGG
Sbjct: 79 IGVLGVAPSASLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAAL 135
Query: 311 DGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP----WIITVGASTLDREFQNF 363
A+ AV G+VVV +A N G + T P +I VGA + +F
Sbjct: 136 K-AAVDK--AVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASF 189
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 3e-22
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 35/123 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFSS G + ++ APG + + + Y ++GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMAS 223
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG L+ + HP+ S S +R+ + +TA + F YG G I
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTAT--------------YLGSSFYYGKGLINV 269
Query: 628 NRA 630
A
Sbjct: 270 EAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-20
Identities = 55/236 (23%), Positives = 79/236 (33%), Gaps = 63/236 (26%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
I + +G G ++ +A LDTG+
Sbjct: 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDL---------------------------- 42
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
++G F V D GHGTH T G
Sbjct: 43 NVVGGASF--------------VAGEAYNTDGNGHGTHVAGTVAAL--------DNTTGV 80
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFND 311
G +P + A KV S G + I+ G + A +G+DVI++SLGG +
Sbjct: 81 L-GVAPSVSLYAVKVL---NSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQ 136
Query: 312 GTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP----WIITVGASTLDREFQNF 363
A+ A G+VVV +A NSG T T P +I VGA + +F
Sbjct: 137 --AVDN--AYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASF 188
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 35/123 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFS G DI APGVN+ + + G+ Y ++GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGS-------------TYASLNGTSMAT 218
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG L+K +P WS IR+ + TA + + YGSG +
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL--------------GSTNLYGSGLVNA 264
Query: 628 NRA 630
A
Sbjct: 265 EAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 17/150 (11%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
V + +D GHGTH T G G +P A + A KV +
Sbjct: 50 VPGEPSTQDGNGHGTHVAGTIAAL--------NNSIGVL-GVAPSAELYAVKVL---GAS 97
Query: 275 GQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAAN 333
G + I +G + A ++G+ V ++SLG P+ A+ + A G++VV ++ N
Sbjct: 98 GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQ--AVNS--ATSRGVLVVAASGN 153
Query: 334 SGPELGTVTNVSPWIITVGASTLDREFQNF 363
SG + + VGA+ + +F
Sbjct: 154 SGAGSISYPARYANAMAVGATDQNNNRASF 183
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 4e-20
Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 42/201 (20%)
Query: 438 QAAVAGAV--GMILC----NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMG 491
+ ++ ND + +++A PA+ K D + +
Sbjct: 164 ELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIR----VA 219
Query: 492 YITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYD 551
+ + S G N + DI APG NI A
Sbjct: 220 ALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNITFLRPDA--------- 263
Query: 552 TRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGS 611
SGTS + V+GV+ + + +P + + ++ ++ +A + +
Sbjct: 264 ----KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK----- 314
Query: 612 FKKATPFSYGSGHIRPNRAMD 632
+ +A+
Sbjct: 315 -------VTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 29/176 (16%)
Query: 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS 273
S + HGT S G+ G P A +++ +V V
Sbjct: 76 SPFPVKKSEALYIHGTAMASLIASRY--GI----------YGVYPHALISSRRVIPDGVQ 123
Query: 274 DGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAAN 333
D + + +I++S G + T + + + ++V + N
Sbjct: 124 DSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGN 183
Query: 334 SGPELGTVTNVSP-----------------WIITVGASTLDREFQNFVELRNGQRF 372
G ++ ++ +I V A R+ + V G
Sbjct: 184 DGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGETPVLHGGGITG 239
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 5e-20
Identities = 57/370 (15%), Positives = 99/370 (26%), Gaps = 112/370 (30%)
Query: 20 LFQAPPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYS 79
A + + +YVV L H + + L + + I +
Sbjct: 65 HRCAKDPWRLPGTYVVVLKEETHLSQS---------ERTARRLQA-QAARRGYLTKILHV 114
Query: 80 YQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSA- 138
+ + GF + + K P V I E + + + S
Sbjct: 115 FHGLLPGFLVKMSGDLLELALKLPHVDYI-------------------EEDSSVFAQSIP 155
Query: 139 WGKGRF---------------GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNS 183
W R G + + LDT + + +
Sbjct: 156 WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREI------------------- 196
Query: 184 TKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGV 243
EG R ++ F+ A + HGTH G
Sbjct: 197 --EG----RVMVTDFENVPEEDG--------TRFHRQASKCDSHGTHLAGVVSGRDA--- 239
Query: 244 NVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVD------VI 297
G AK A + + +V G+ + L G + + V+
Sbjct: 240 -------GVAK----GASMRSLRVL---NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVV 285
Query: 298 SVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP----WIITVGA 353
+ L G + N A + G+V+V +A N + SP +ITVGA
Sbjct: 286 LLPLAGGYSRVLNA--ACQR--LARAGVVLVTAAGNFRDD---ACLYSPASAPEVITVGA 338
Query: 354 STLDREFQNF 363
+ +
Sbjct: 339 TNAQDQPVTL 348
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 20/125 (16%)
Query: 493 ITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDT 552
IT +T +P ++ G D+ APG +II A +
Sbjct: 334 ITVGATNAQDQPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCSTC------- 378
Query: 553 RRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSF 612
+ SGTS + HVAG+ ++ +A P+ + + +R ++ + +D
Sbjct: 379 ----FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS-AKDVINEAWFPEDQ 433
Query: 613 KKATP 617
+ TP
Sbjct: 434 RVLTP 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 93.6 bits (232), Expect = 6e-20
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 24/130 (18%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP-----YNIMSG 562
+A FSS + APGV I++ G ++ Y+ G
Sbjct: 328 VAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 563 TSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGS 622
TSM+ PHV GVV +L P+ P IR + TA + G
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGY 428
Query: 623 GHIRPNRAMD 632
G ++ + A+
Sbjct: 429 GLVKLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 44/235 (18%), Positives = 72/235 (30%), Gaps = 67/235 (28%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVW---PESKSFSDEGYGPVPSRWKGTCQNSTKEGVR 189
I + + G +II+A +DTGV P+ + GY P
Sbjct: 141 IGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAF---------------- 184
Query: 190 CNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMG 249
+ + + GTH T
Sbjct: 185 ----------------------DEELPAGTDSSYGGSAGTHVAGTIAAK----------K 212
Query: 250 NGT-AKGGSPKARVAAYKV---CWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDP 305
+G G +P A++ + +G D + G A G V++ S GG
Sbjct: 213 DGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG 272
Query: 306 ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVS-----PWIITVGAST 355
Y A A++HG+V+V SA N+ + ++ P +I V A
Sbjct: 273 YSYTMK-EAFDY--AMEHGVVMVVSAGNNTSD----SHHQYPAGYPGVIQVAALD 320
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 3e-19
Identities = 48/249 (19%), Positives = 82/249 (32%), Gaps = 50/249 (20%)
Query: 131 GVIHSSSAW-GKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVR 189
G++ + A G +G+ I+A DTG+ S
Sbjct: 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM----------------------- 42
Query: 190 CNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMG 249
+ + A Y ++ N A D GHGTH + GN G GM
Sbjct: 43 ------HEAFRGKITALY------ALGRTNNANDTNGHGTHVAGSVLGN---GSTNKGM- 86
Query: 250 NGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A P+A + + G +++ F A G + + S G +
Sbjct: 87 ---A----PQANLVFQSIMDSGGGLGG-LPSNLQTLFSQAYSAGARIHTNSWGAAVNGAY 138
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTLDREFQNFVELR 367
+ + K+ + ++ +A N GP GT++ + ITVGA+ R
Sbjct: 139 TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADN 198
Query: 368 NGQRFKGTS 376
+ +S
Sbjct: 199 INHVAQFSS 207
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 3e-19
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+A FSS GP +KPD+ APG I++A + + + Y M GTSM+
Sbjct: 202 VAQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSS-FWANHDSKYAYMGGTSMAT 258
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
P VAG V L+ + +++ A A + G + G G +
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALI--AGAADIGLGY----PNGNQGWGRVTL 312
Query: 628 NRAMDPGLVYD 638
+++++ V +
Sbjct: 313 DKSLNVAYVNE 323
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 3e-19
Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 20/233 (8%)
Query: 136 SSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLI 195
+ + I I +D F V W + T E + +
Sbjct: 39 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIR 98
Query: 196 --GARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTA 253
G + + A + H H ST G +
Sbjct: 99 DQGLKGKEKEEALE-----AVIPDTKDRIVLNDHACHVTSTIVGQ---------EHSPVF 144
Query: 254 KGGSPKARVAAYKVCWPQV--SDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFND 311
G +P RV D ++ + D+A+ G ++I + +
Sbjct: 145 -GIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGE 203
Query: 312 GTAIGAF-HAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNF 363
+ A + +++V N+ E + V P + VGA+ +D +F
Sbjct: 204 EILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHF 256
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 6e-18
Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 30/129 (23%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
FS+ G N K I APG I+ A ++GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE------------PVRLTGTSMAA 295
Query: 568 PHVAGVVGLLKTAH----PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623
P + G+ LL + A+R+A++ TA D P G
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVV---------EEPERCLRG 346
Query: 624 HIRPNRAMD 632
+ AM
Sbjct: 347 FVNIPGAMK 355
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 55/311 (17%), Positives = 84/311 (27%), Gaps = 79/311 (25%)
Query: 82 NHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGV--------I 133
I + ++ K P V + + L SW +
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 134 HSSSAWGKGRF-GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
+ S W I +A LDTGV + +
Sbjct: 91 KAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAA-------------------------- 124
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
D GHGTH + T G
Sbjct: 125 ---------NIAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGV 167
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD-------------------- 292
G +P ++ + +V + G +DI G + AI
Sbjct: 168 V-GVAPGVQIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDD 223
Query: 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVG 352
+VIS+SLGG D + I A GIV+V ++ N G + P +I VG
Sbjct: 224 AAEVISMSLGGPADDSYLY-DMIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVG 280
Query: 353 ASTLDREFQNF 363
A + +F
Sbjct: 281 AIDSNDNIASF 291
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 47/138 (34%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ASFS+ P +++APGV+I++ + Y + GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 568 PHVAGVVGLLKTAH-------------PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614
PHV+GVV L++ A+ D S + +R + TA D+ D
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA---DDLGPTGWDA---- 377
Query: 615 ATPFSYGSGHIRPNRAMD 632
YG G +R A+
Sbjct: 378 ----DYGYGVVRAALAVQ 391
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 51/280 (18%), Positives = 82/280 (29%), Gaps = 77/280 (27%)
Query: 99 IAKHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVW 158
+ K + +K L ++ + + W G II +DTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEV-PM------GVEIVEAPAVWRASAKGAGQIIGVIDTGCQ 53
Query: 159 PESKSFSD---EGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISV 215
+ ++ G
Sbjct: 54 VDHPDLAERIIGGVNLTTD---------------------------------------YG 74
Query: 216 NFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDG 275
D+ GHGTH T G+G G +PKA + K DG
Sbjct: 75 GDETNFSDNNGHGTHVAGTVAAA--------ETGSGVV-GVAPKADLFIIKAL---SGDG 122
Query: 276 QCFDADILKGFDMAI------HDGVDVISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVV 328
I K A+ + + +I++SLGG ++ +D A+ AV + + VV
Sbjct: 123 SGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHD--AVKY--AVSNNVSVV 178
Query: 329 CSAANSGPELGTVTNVS-----PWIITVGASTLDREFQNF 363
C+A N G + +I VGA D +F
Sbjct: 179 CAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSDF 218
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 39/128 (30%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
++ F++ + DI APGV I + + + Y +SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAA 253
Query: 568 PHVAGVVGLLKTAHPD-----WSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGS 622
PHVAG + L+ D S + I + ++ A T + G+
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATP-------------IGFTAQAEGN 300
Query: 623 GHIRPNRA 630
G + +
Sbjct: 301 GFLTLDLV 308
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 6e-18
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 29/135 (21%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP---------YN 558
++ FS+ G N DI APG + + + Y
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 559 IMSGTSMSCPHVAGVVGLLKTA-HPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATP 617
+GT+++ P V+G + L+ H + P + +++N
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFS----------- 450
Query: 618 FSYGSGHIRPNRAMD 632
YG G + +A++
Sbjct: 451 -RYGHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 4e-16
Identities = 50/332 (15%), Positives = 88/332 (26%), Gaps = 114/332 (34%)
Query: 84 INGFAATLEEEEAAEIAKHP-DVVSIFPNKGKKLHTTRS-------------WDFMLLEN 129
++ + + A +A + D+ I + + ++ WD + N
Sbjct: 75 LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITN 134
Query: 130 NGVIHSSSAWGKGRFGEDIIIANLDTGV-----------WPESKSFSDEGYGPVPSRWKG 178
NG ++ + IA +DTGV +SK+
Sbjct: 135 NGA-----SYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLN---------- 179
Query: 179 TCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGN 238
G R + D +GHGT N
Sbjct: 180 -----------------GFRGTE----------PEETGDVHDVNDRKGHGTMVSGQTSAN 212
Query: 239 LVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVIS 298
G G +P + Y+V + + K A +DG VI+
Sbjct: 213 ----------GKLI--GVAPNNKFTMYRV----FGSKKTELLWVSKAIVQAANDGNQVIN 256
Query: 299 VSLGGDPADYFNDGTAIGAFH-------------AVKHGIVVVCSAANSGPELGTVTNVS 345
+S+G ND A K +VV +A N G ++ +
Sbjct: 257 ISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLK 316
Query: 346 ------------------PWIITVGASTLDRE 359
++TVG++
Sbjct: 317 LQREYQGNGEVKDVPASMDNVVTVGSTDQKSN 348
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 36/125 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+SFS+ G D+ APG +I + + + Y +SGTSM+
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTSMAT 228
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAGV GLL + S S IR+AI TA T + G +
Sbjct: 229 PHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT-------------YWAKGRVNA 273
Query: 628 NRAMD 632
+A+
Sbjct: 274 YKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 9e-16
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
V+ ++T ++ GHGTH A + G +PKA + A +V +
Sbjct: 59 VDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGT--------APKASILAVRVL---DNS 107
Query: 275 GQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAAN 333
G + G A G VIS+SLGG A+ A G VVV +A N
Sbjct: 108 GSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ--AVNY--AWNKGSVVVAAAGN 163
Query: 334 SGPELGTVTNVSPWIITVGASTLDREFQNF 363
+G I V ++ + +F
Sbjct: 164 AGNTAPNYPAYYSNAIAVASTDQNDNKSSF 193
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 36/125 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ASFS+ G D+ APGV+I++ TG Y MSGTSM+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTITGN-------------RYAYMSGTSMAS 229
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG+ LL + + IR AI TA T + G I
Sbjct: 230 PHVAGLAALLASQGR--NNIEIRQAIEQTADKIS-------------GTGTYFKYGRINS 274
Query: 628 NRAMD 632
A+
Sbjct: 275 YNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 51/236 (21%), Positives = 73/236 (30%), Gaps = 64/236 (27%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
++ AW + IA +DTGV
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-------------------------- 51
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
K+I F V+ + D HGTH A N G+
Sbjct: 52 KVIKGYDF--------------VDNDYDPMDLNNHGTHVAGIAAAE---TNNATGI---- 90
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD-PADYFND 311
G +P R+ A + +G +DI A G +VI++SLG D +
Sbjct: 91 -AGMAPNTRILAVRALD---RNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN 146
Query: 312 GTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP----WIITVGASTLDREFQNF 363
A+ A G VVV +A N+G T P +I VGA +F
Sbjct: 147 --AVNY--AWNKGSVVVAAAGNNGSS----TTFEPASYENVIAVGAVDQYDRLASF 194
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 25/104 (24%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+SFS+ G DI APG +I +++ + AT N +SGTSM+
Sbjct: 187 RSSFSNYGT--------CLDIYAPGSSITSSWYTSNSAT-----------NTISGTSMAS 227
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA------RTRDNTAN 605
PHVAGV L +P+ SP+ + + + T A + + N
Sbjct: 228 PHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVTDAKTGSPN 271
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 30/149 (20%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
++ + A D GHGTH T GG + +G+ AK V +V
Sbjct: 60 IDNDYDATDCNGHGTHVAGTIGG------STYGV----AK----NVNVVGVRVL---NCS 102
Query: 275 GQCFDADILKGFDMAI--HDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAA 332
G ++ ++ G + G V ++SLGG + +D A+ A AV GI V +A
Sbjct: 103 GSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDD--AVNA--AVAAGITFVVAAG 158
Query: 333 NSGPELGTVTNVSP----WIITVGASTLD 357
N N SP ITVG++T +
Sbjct: 159 NDN---SNACNYSPARAADAITVGSTTSN 184
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-16
Identities = 48/247 (19%), Positives = 86/247 (34%), Gaps = 44/247 (17%)
Query: 127 LENNGVIHSSSAWGKGRFGEDIIIANLDTGVW--PESKSFSDEGYGPVPSRWKGTCQNST 184
+ + + W G G+++++A +DTG+ + + GY + + +
Sbjct: 13 YFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGD-- 70
Query: 185 KEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
G + G + N A + D HG+H T +
Sbjct: 71 --GRDADPFDEGDWFDNWACGGRP-------DPRKERSDSSWHGSHVAGTIAAVTNNRIG 121
Query: 245 VFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI----------HDGV 294
V G+ + A+V + +D+DI G A +
Sbjct: 122 VAGV--------AYGAKVVPVRAL----GRCGGYDSDISDGLYWAAGGRIAGIPENRNPA 169
Query: 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP----WIIT 350
VI++SLG D +N T I A + G +VV +A N +N P +++
Sbjct: 170 KVINMSLGSDGQCSYNAQTMIDR--ATRLGALVVVAAGNENQN---ASNTWPTSCNNVLS 224
Query: 351 VGASTLD 357
VGA+T
Sbjct: 225 VGATTSR 231
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 30/129 (23%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFS+ G + D+ APG +I++ Y+ M+GTSM+
Sbjct: 234 RASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSDA------YSFMAGTSMAT 279
Query: 568 PHVAGVVGLLK----TAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623
PHV+GV L+ + + + +P+ ++ +++T + + + GSG
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR------------ALGSG 327
Query: 624 HIRPNRAMD 632
+ A++
Sbjct: 328 IVDAEAAVN 336
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 47/138 (34%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ASFS+ P +++APGV+I++ + Y + GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 568 PHVAGVVGLLKTAH-------------PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614
PHV+GVV L++ A+ D S + +R + TA T
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT----------- 298
Query: 615 ATPFSYGSGHIRPNRAMD 632
YG G +R A+
Sbjct: 299 GWDADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 49/256 (19%), Positives = 74/256 (28%), Gaps = 79/256 (30%)
Query: 133 IHSSSAWGKGRF-GEDIIIANLDTGVW---PESKSFSDEGYGPVPSRWKGTCQNSTKEGV 188
+ + S W I +A LDTGV P+ + +
Sbjct: 15 VKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLR--------------- 59
Query: 189 RCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGM 248
D GHGTH + T
Sbjct: 60 -----------------------GKVSTKLRDCADQNGHGTHVIGTIAAL---------- 86
Query: 249 GNGT-AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD--------------- 292
N G +P ++ + +V + G +DI G + AI
Sbjct: 87 NNDIGVVGVAPGVQIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAG 143
Query: 293 -----GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPW 347
+VIS+SLGG D + I A GIV+V ++ N G + P
Sbjct: 144 DPDDDAAEVISMSLGGPADDSYLY-DMIIQ--AYNAGIVIVAASGNEGAPSPSYPAAYPE 200
Query: 348 IITVGASTLDREFQNF 363
+I VGA + +F
Sbjct: 201 VIAVGAIDSNDNIASF 216
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 5e-16
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 20/125 (16%)
Query: 493 ITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDT 552
IT +T +P ++ G D+ APG +II A +
Sbjct: 182 ITVGATNAQDQPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCSTCF------ 227
Query: 553 RRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSF 612
SGTS + HVAG+ ++ +A P+ + + +R ++ + +D
Sbjct: 228 -----VSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS-AKDVINEAWFPEDQ 281
Query: 613 KKATP 617
+ TP
Sbjct: 282 RVLTP 286
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 33/159 (20%), Positives = 52/159 (32%), Gaps = 34/159 (21%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
F+ A + HGTH G G AK A + + +V
Sbjct: 62 TRFHRQASKCDSHGTHLAGVVSGRDA----------GVAK----GASMRSLRVL---NCQ 104
Query: 275 GQCFDADILKGFDMAIHD------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
G+ + L G + G V+ + L G + N A + G+V+V
Sbjct: 105 GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA--ACQR--LARAGVVLV 160
Query: 329 CSAANSGPELGTVTNVSP----WIITVGASTLDREFQNF 363
+A N + SP +ITVGA+ +
Sbjct: 161 TAAGNFRDD---ACLYSPASAPEVITVGATNAQDQPVTL 196
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 7e-16
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFS+ G D+ APG +I +A+ + AT ++GTSM+
Sbjct: 185 RASFSNYGSCV--------DLFAPGASIPSAWYTSDTAT-----------QTLNGTSMAT 225
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA------RTRDNTAN 605
PHVAGV L +P +P+++ SAI+ A + N
Sbjct: 226 PHVAGVAALYLEQNPSATPASVASAILNGATTGRLSGIGSGSPN 269
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 5e-13
Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 30/147 (20%)
Query: 217 FNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQ 276
+D GHGTH T GG G AK + A +V +G
Sbjct: 60 LGGNGQDCNGHGTHVAGTIGGVTY----------GVAK----AVNLYAVRVL---DCNGS 102
Query: 277 CFDADILKGFDMAIHDGVD--VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANS 334
+ ++ G D + V ++SLGG + ++ A+ ++ G+V +A N
Sbjct: 103 GSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN--AVKN--SIAAGVVYAVAAGND 158
Query: 335 GPELGTVTNVSP----WIITVGASTLD 357
N SP +TVGA+T
Sbjct: 159 N---ANACNYSPARVAEALTVGATTSS 182
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+SFS+ G D+ APG I +A+ Y +SGTSM+
Sbjct: 185 RSSFSNWGSCV--------DLFAPGSQIKSAWYDG-------------GYKTISGTSMAT 223
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
PHVAGV L + +P + + + A
Sbjct: 224 PHVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 30/155 (19%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
V+ + + D GHGTH T GG + +G+ AK + +V
Sbjct: 58 VDNDADSSDCNGHGTHVAGTIGG------SQYGV----AK----NVNIVGVRVL---SCS 100
Query: 275 GQCFDADILKGFDMAI--HDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAA 332
G + ++ G D G V ++SLGG + + A+ A++ G+ + +A
Sbjct: 101 GSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDS--AVQG--AIQSGVSFMLAAG 156
Query: 333 NSGPELGTVTNVSP----WIITVGASTLDREFQNF 363
NS + N SP +TVG++T +F
Sbjct: 157 NSNAD---ACNTSPARVPSGVTVGSTTSSDSRSSF 188
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 41/153 (26%), Positives = 55/153 (35%), Gaps = 35/153 (22%)
Query: 216 NFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDG 275
++ +TARD GHGTH T G G AK K + KV G
Sbjct: 59 SYASTARDGHGHGTHCAGTIGSKTW----------GVAK----KVSIFGVKVL---DDSG 101
Query: 276 QCFDADILKGFDMAIHDGVD-------VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
++I+ G D D V S+SLGG + N A G+ V
Sbjct: 102 SGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ--AAAR--LQSSGVFVA 157
Query: 329 CSAANSGPELGTVTNVSP----WIITVGASTLD 357
+A N N SP + TVGA+ +
Sbjct: 158 VAAGNDN---RDAANTSPASEPTVCTVGATDSN 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 28/104 (26%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
++FS+ G DI APG +I + + G N +SGTSM+
Sbjct: 190 RSTFSNYGRVV--------DIFAPGTSITSTWIGG-------------RTNTISGTSMAT 228
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA------RTRDNTAN 605
PH+AG+ L S A+ I T + T N
Sbjct: 229 PHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLTSIPSGTVN 271
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 40/153 (26%), Positives = 57/153 (37%), Gaps = 35/153 (22%)
Query: 216 NFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDG 275
+ ++RD GHGTH T G G AK K ++ KV +G
Sbjct: 58 TYYYSSRDGNGHGTHCAGTVGSRTY----------GVAK----KTQLFGVKVL---DDNG 100
Query: 276 QCFDADILKGFDMAIHDGVD-------VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
+ I+ G D D + V S+SLGG + N A G++V
Sbjct: 101 SGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS--AAAR--LQSSGVMVA 156
Query: 329 CSAANSGPELGTVTNVSP----WIITVGASTLD 357
+A N+ + N SP + TVGAS
Sbjct: 157 VAAGNNNAD---ARNYSPASEPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 28/104 (26%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+SFS+ G DI PG +I++ + G G+T +SGTSM+
Sbjct: 189 RSSFSNYGSVL--------DIFGPGTDILSTWIG--GST-----------RSISGTSMAT 227
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA------RTRDNTAN 605
PHVAG+ L T + ++ I TA T N
Sbjct: 228 PHVAGLAAYLMTLGKT-TAASACRYIADTANKGDLSNIPFGTVN 270
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 2e-11
Identities = 99/711 (13%), Positives = 181/711 (25%), Gaps = 241/711 (33%)
Query: 58 HHEFLGSFLGSTE-KARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKL 116
HH + G + + +D + ++ F ++ I ++ I +K
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 117 HTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRW 176
T R + +L + ++ +F E+++ N Y + S
Sbjct: 63 GTLRLFWTLLSKQEEMVQ--------KFVEEVLRIN----------------YKFLMSPI 98
Query: 177 KGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFN------NTARDHEGHGTH 230
K + + Y++Q + N N N +R
Sbjct: 99 KTEQRQPSMM-----------------TRMYIEQRDRLYNDNQVFAKYNVSRLQP---YL 138
Query: 231 TLSTAGGNLVP--GVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDM 288
L A L P V + G+ GS K VA V C + D
Sbjct: 139 KLRQALLELRPAKNVLIDGV------LGSGKTWVAL------DV----CLSYKVQCKMDF 182
Query: 289 AIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWI 348
I ++L + + T + + + I P
Sbjct: 183 KIF------WLNLK----NCNSPETVLEMLQKLLYQID---------PNW---------- 213
Query: 349 ITVGASTLDREFQNFVELRNGQR--FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAAS 406
T + ++ R K L L+ L +
Sbjct: 214 -TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------LV--L-------LN---- 252
Query: 407 LCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN-------EI 459
+ A + + KIL+ T R K ++ A + D S +
Sbjct: 253 VQNAKAWNAFNLSCKILL-----TTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 460 TA-----DPHFLP--ASQI----------TYKDGVKVLDYIKSSDNPMGYITSPSTYLNA 502
P LP + +DG+ D K ++N
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK--------------HVNC 352
Query: 503 KPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTG-AIGATELPYDTRRIPYNIMS 561
+ + + N + P + F ++ P IP ++S
Sbjct: 353 DK---LTTIIESSLNVLEPAEYR-----------KMFDRLSV----FPPSA-HIPTILLS 393
Query: 562 -----GTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTTARTRDNTA---NPMRD 609
V V L K + P S +I S + +N + D
Sbjct: 394 LIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 610 GSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGY-----NQTTIKRFFGT 664
Y + D + D Y F IG+ F
Sbjct: 452 ---------HY-----NIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTLFRM 495
Query: 665 QYECSKSANLEDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLG 715
+ L DF + L +K+++ + N + S+ L
Sbjct: 496 VF-------L-DFRF-------------LEQKIRHDSTAWNASGSILNTLQ 525
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-08
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+S + ++ G D N GTS +
Sbjct: 232 HPPYSEGCSA----------------VMAVTYSSGSGEYIHSSDINGRCSNSHGGTSAAA 275
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPM-RDGSFKKATPFSYGSGHI 625
P AGV LL A+P+ + ++ + +A + A+ RD + K YG G I
Sbjct: 276 PLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKI 334
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 4e-07
Identities = 38/262 (14%), Positives = 65/262 (24%), Gaps = 78/262 (29%)
Query: 127 LENNGV----IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQN 182
L N I+ W G ++ A +D G+ E++ D
Sbjct: 31 LVNPSFPGSDINVLDLWYNNITGAGVVAAIVDDGLDYENEDLKD---------------- 74
Query: 183 STKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNN------TARDHEGHGTHTLSTAG 236
+ S +FN+ + HGT
Sbjct: 75 ---------------NFCA----------EGSWDFNDNTNLPKPRLSDDYHGTRCAGEIA 109
Query: 237 GNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDV 296
G+G A+++ ++ G D + D D+
Sbjct: 110 AKKGNNFCGVGVG--------YNAKISGIRI-----LSGDITTEDEAASLIYGL-DVNDI 155
Query: 297 ISVSLGGDPADYFNDGTAIGAFHAVKH---------GIVVVCSAANSGPELGTVT----N 343
S S G G + A+ G + V ++ N G
Sbjct: 156 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYT 215
Query: 344 VSPWIITVGASTLDREFQNFVE 365
S + IT+GA + E
Sbjct: 216 NSIYSITIGAIDHKDLHPPYSE 237
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 6/149 (4%)
Query: 486 SDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGA 545
+ G S + S SSA P A + ++
Sbjct: 185 ASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVP----WYSEACSSTLATTYSSGNQN 240
Query: 546 TELPYDT--RRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
+ T R+ +GTS S P AG++ L A+ + + ++ ++ T++
Sbjct: 241 EKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLN 300
Query: 604 ANPMRDGSFKKATPFSYGSGHIRPNRAMD 632
A+ + SYG G + +
Sbjct: 301 ADDWATNGVGRKVSHSYGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 63/255 (24%)
Query: 127 LENNGV--IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNST 184
L ++ AW +G G I+++ LD G+ +
Sbjct: 17 LSGVTQRDLNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAG------------------ 58
Query: 185 KEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVN 244
Y S + N+ D + T G G
Sbjct: 59 -------------NYDP----------GASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEV 95
Query: 245 VFGMGNGT-AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303
NG G + AR+ ++ +V+D G + + + + S S G
Sbjct: 96 AAVANNGVCGVGVAYNARIGGVRMLDGEVTDA---VEARSLGLNP---NHIHIYSASWGP 149
Query: 304 DPADYFNDGTAIGAFHAVKH---------GIVVVCSAANSGPELGTV----TNVSPWIIT 350
+ DG A A A G + V ++ N G E + S + ++
Sbjct: 150 EDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLS 209
Query: 351 VGASTLDREFQNFVE 365
+ ++T + E
Sbjct: 210 ISSATQFGNVPWYSE 224
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 4e-05
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 5/112 (4%)
Query: 388 PLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT-ARVDKGRQAAVAGAVG 446
L+ A NA + + + + RG DK A GA G
Sbjct: 73 VLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASG 132
Query: 447 MILCNDKSSGNEITADPH----FLPASQITYKDGVKVLDYIKSSDNPMGYIT 494
++ N + NE+ H + A I G K+L I+ I
Sbjct: 133 AVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIE 184
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 7e-05
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 23 APPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQN 82
A + + +YVV L E + +R T+ I + +
Sbjct: 30 AKDPWRLPGTYVVVLK-----EETHLSQSERTARRLQAQAARRGYLTK-----ILHVFHG 79
Query: 83 HINGFAATLEEEEAAEIAKHPDVVSI 108
+ GF + + K P V I
Sbjct: 80 LLPGFLVKMSGDLLELALKLPHVDYI 105
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 23 APPSFAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQN 82
A + + +YVV L E + +R T+ I + +
Sbjct: 40 AKDPWRLPGTYVVVLK-----EETHLSQSERTARRLQAQAARRGYLTK-----ILHVFHG 89
Query: 83 HINGFAATLEEEEAAEIAKHPDVVSI 108
+ GF + + K P V I
Sbjct: 90 LLPGFLVKMSGDLLELALKLPHVDYI 115
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.0 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.97 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.85 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.79 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.69 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.58 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.28 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.73 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 96.13 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.66 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.58 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.16 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 90.69 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.45 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 87.52 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.83 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 82.37 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-119 Score=1046.35 Aligned_cols=629 Identities=39% Similarity=0.675 Sum_probs=569.3
Q ss_pred ccccccccccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCC-Ccccccccccc
Q 048642 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNRKLIG 196 (782)
Q Consensus 118 ~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ki~g 196 (782)
|+++|+|+|+.. ...+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.+.+ +...||+|+++
T Consensus 1 Tt~s~~flgl~~-----~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig 75 (649)
T 3i6s_A 1 TTHTSDFLKLNP-----SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG 75 (649)
T ss_dssp CCSHHHHTTCCS-----SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred CCCChHHcCCCC-----chhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence 578999999974 357999999999999999999999999999999999999999999999988 77899999999
Q ss_pred cccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCC
Q 048642 197 ARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQ 276 (782)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~ 276 (782)
.++|.+++.... .+... +..+++|..||||||||||||+.+++.+.+|++.+.+.||||+|+|++||+|+.. +
T Consensus 76 ~~~f~~~~~~~~--~~~~~-~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~----g 148 (649)
T 3i6s_A 76 ANYFNKGILAND--PTVNI-TMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE----G 148 (649)
T ss_dssp EEECCHHHHHHC--TTCCC-TTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT----E
T ss_pred eEeccCcccccc--ccccc-CCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC----C
Confidence 999998876543 22222 4567889999999999999999988888999988999999999999999999977 4
Q ss_pred CChhHHHHHHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccC
Q 048642 277 CFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356 (782)
Q Consensus 277 ~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~ 356 (782)
|..+++++||+||+++|+||||||||.....+..+++.+++++|+++|++||+||||+|+...++.+.+||+|+|||++.
T Consensus 149 ~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~ 228 (649)
T 3i6s_A 149 TFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228 (649)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeec
Confidence 89999999999999999999999999886677889999999999999999999999999999999999999999999999
Q ss_pred CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCc--cceEEEEeeCCcchhh
Q 048642 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKV--KGKILVCLRGDTARVD 434 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~~~~~~ 434 (782)
+|.|...+.++++..+.|.+++........+|+++.. ....|.+..++...+ +||||+|+|+.|.+.+
T Consensus 229 dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~ 298 (649)
T 3i6s_A 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQ 298 (649)
T ss_dssp SCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHH
T ss_pred ccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc----------cccccccccccccccccCCcEEEEeCCCccHHH
Confidence 9999999999999999999998776556779999854 356899988888777 9999999999999999
Q ss_pred hhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCC
Q 048642 435 KGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSA 514 (782)
Q Consensus 435 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~ 514 (782)
|..+++++|+.|+|++|+. .....+.+.+|+++|+.++|..|++|++++.+++++|.+..+..+..+.+.++.||||
T Consensus 299 k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSr 375 (649)
T 3i6s_A 299 MRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSAR 375 (649)
T ss_dssp HHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCC
T ss_pred HHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCC
Confidence 9999999999999999987 4556677899999999999999999999999999999999999988889999999999
Q ss_pred CCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCC-CCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHH
Q 048642 515 GPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDT-RRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAI 593 (782)
Q Consensus 515 Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L 593 (782)
||+...+++|||||+|||++|+++++..........+. ....|..+||||||||||||+||||||+||+|+|++||++|
T Consensus 376 GP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaL 455 (649)
T 3i6s_A 376 GPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAM 455 (649)
T ss_dssp SSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred CCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99987789999999999999999999865443333332 34589999999999999999999999999999999999999
Q ss_pred HhccccccCCCCCCCCC-CCCCCCCCcccccccCccccCCCCccccCCcchhhhhcccCCCCccceeeeccceec--ccC
Q 048642 594 MTTARTRDNTANPMRDG-SFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYE--CSK 670 (782)
Q Consensus 594 ~~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 670 (782)
|+||.++++.+.++.+. .+.+++++.||+|+||+.+|++||||||.+.+||+.|||+++|+.++|+.+++.++. |+.
T Consensus 456 mtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~ 535 (649)
T 3i6s_A 456 MTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN 535 (649)
T ss_dssp HHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC
T ss_pred hcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC
Confidence 99999999999998875 466888999999999999999999999999999999999999999999999998888 986
Q ss_pred CCCCCCCCCCcEEeec-cCce-----EEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEec
Q 048642 671 SANLEDFNYPSISVPM-ISGS-----VTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPK 743 (782)
Q Consensus 671 ~~~~~~~n~ps~~~~~-~~~~-----~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 743 (782)
...+||||||++.. +.+. ++|+|||||||+ ..+|+++++.|.|++|+|+|++|+|++.+|+++|+|||+..
T Consensus 536 --~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~ 613 (649)
T 3i6s_A 536 --PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYI 613 (649)
T ss_dssp --CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEEC
T ss_pred --chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEec
Confidence 46799999999987 4555 899999999999 89999999999999999999999998899999999999986
Q ss_pred CCCCCCceEEEEEEEEc--CCcEEEEEEEEEEc
Q 048642 744 WSGAPDNYRFGELTWTD--GKHYVRSPIVVNQA 774 (782)
Q Consensus 744 ~~~~~~~~~~G~i~~~~--~~~~v~~P~~~~~~ 774 (782)
. ...+.|.||+|+|++ +.|.||+|++++..
T Consensus 614 ~-~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 614 G-DEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp C-C---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred c-cCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 5 456678999999999 89999999999864
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-109 Score=967.49 Aligned_cols=612 Identities=42% Similarity=0.772 Sum_probs=518.8
Q ss_pred ccccccccccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCccccccccccc
Q 048642 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGA 197 (782)
Q Consensus 118 ~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~ 197 (782)
|+++|+|+||+ ..+|....+|+||+|||||||||++||+|++++++|++.+|+|.|+.+.+ +.||+|++++
T Consensus 1 tt~s~~flGl~-------~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~--~~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNN--FRCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCC-------TTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSS--CCCCSSEEEE
T ss_pred CCCChhHcCCC-------ccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCC--cccCcceeee
Confidence 58999999997 36888889999999999999999999999999999999999999988764 7799999999
Q ss_pred ccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCC
Q 048642 198 RYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQC 277 (782)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~ 277 (782)
++|..++..... +..+++|++||||||||||||+..++.+.+|.+.+.++||||+|+|++||+|++. +|
T Consensus 72 ~~~~~~~~~~~~-------~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~----g~ 140 (621)
T 3vta_A 72 RSYHIGRPISPG-------DVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND----GC 140 (621)
T ss_dssp EECCCSSSCCTT-------CCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT----EE
T ss_pred eecccCCccCCC-------CCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC----CC
Confidence 999766433322 3557899999999999999999988888888888889999999999999999987 58
Q ss_pred ChhHHHHHHHHhhhCCCeEEEEccCCC-CCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccC
Q 048642 278 FDADILKGFDMAIHDGVDVISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356 (782)
Q Consensus 278 ~~~~i~~ai~~a~~~g~dVIn~SlG~~-~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~ 356 (782)
..+++++||++|+++|+||||||||+. ...+..+++++++++|+++||++|+||||+|+...++.+.+||+++|++++.
T Consensus 141 ~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~ 220 (621)
T 3vta_A 141 SDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220 (621)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeec
Confidence 899999999999999999999999987 3456778999999999999999999999999999999999999999999999
Q ss_pred CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhh
Q 048642 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 436 (782)
++.+...+.++++..+.+.++.... ...+++++..+.............|....+++.+++|||++|+++ +..+.
T Consensus 221 d~~~~~~~~~~~~~~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~---~~~~~ 295 (621)
T 3vta_A 221 DRKFVTQVQIGNGQSFQGVSINTFD--NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS---FGPHE 295 (621)
T ss_dssp SEEEEEEEEETTSCEEEEBCCCCSC--CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSC---CCHHH
T ss_pred cccceeeEEeccCceeeeeecccCC--CcccccccccccccccccccccccccccccccccccceEEEEecC---CChhH
Confidence 9999999999999999988876433 467788887777666666777889999999999999999999875 34566
Q ss_pred HHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCC
Q 048642 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGP 516 (782)
Q Consensus 437 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 516 (782)
.+....|+.+++++++... ..+.+.+|...++..++..+..|+.....+.+.+....+. .....+.++.||||||
T Consensus 296 ~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~~~va~FSSrGP 370 (621)
T 3vta_A 296 FFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGP 370 (621)
T ss_dssp HHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTCCCBCTTSCCCS
T ss_pred HhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCCCceeeecCCCC
Confidence 7788899999999987543 2356789999999999999999999999888888665544 3456789999999999
Q ss_pred CCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 517 NKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 517 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
+...++++||||+|||++|+|+++....... +.....|..+||||||||||||+||||||+||+|+|++||++||+|
T Consensus 371 ~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtT 447 (621)
T 3vta_A 371 NRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447 (621)
T ss_dssp CTTCTTSCSCCEEEECSSEEEECCSSSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHT
T ss_pred CCCCCCeeccccccCCcceEeecCccccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhc
Confidence 9877899999999999999999987543322 2345589999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccccCccccCCCCccccCCcchhhhhcccCCCCccceeeeccceecccCCC--CC
Q 048642 597 ARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSA--NL 674 (782)
Q Consensus 597 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 674 (782)
|++++..+. ++.+++||+|+||+.+|++||||||.+.+||+.|||+++|++++++.+++....|+... ..
T Consensus 448 A~~~~~~~~--------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (621)
T 3vta_A 448 ASPMNARFN--------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRV 519 (621)
T ss_dssp CBCCCTTTC--------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC-----------------------------CG
T ss_pred CCcccccCC--------CCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcc
Confidence 998876543 56789999999999999999999999999999999999999999999999988898754 57
Q ss_pred CCCCCCcEEee---ccCceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCc
Q 048642 675 EDFNYPSISVP---MISGSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDN 750 (782)
Q Consensus 675 ~~~n~ps~~~~---~~~~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~ 750 (782)
.+||||||++. +...+++|+|||||+|. ..||+++++.|.|++|+|+|++|+|++.+|+++|+|||+. ...+.
T Consensus 520 ~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~---~~~~~ 596 (621)
T 3vta_A 520 WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG---SIKGF 596 (621)
T ss_dssp GGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE---CCCSS
T ss_pred cccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe---cCCCc
Confidence 79999999985 44478999999999999 9999999999999999999999999888999999999986 36788
Q ss_pred eEEEEEEEEcCCcEEEEEEEEEE
Q 048642 751 YRFGELTWTDGKHYVRSPIVVNQ 773 (782)
Q Consensus 751 ~~~G~i~~~~~~~~v~~P~~~~~ 773 (782)
|.||+|+|+|+.|.||+|++|+.
T Consensus 597 ~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 597 VVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEEEEEEEECSSCCCEEEEEEEC
T ss_pred eEEEEEEEEcCCEEEEeCEEEEE
Confidence 99999999999999999999874
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-82 Score=771.47 Aligned_cols=544 Identities=22% Similarity=0.298 Sum_probs=428.6
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCC----------CC-Ccccccccccccccchhh
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNS----------TK-EGVRCNRKLIGARYFNRA 203 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~----------~~-~~~~~~~ki~g~~~~~~~ 203 (782)
+..+|..+.+|+||+|||||||||++||+|.+. ..|++.|..+ .. .+.+||+|++++++|.++
T Consensus 6 ~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~ 79 (926)
T 1xf1_A 6 VKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKD 79 (926)
T ss_dssp CHHHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCC
T ss_pred cHHHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccC
Confidence 457999999999999999999999999999853 4677666432 11 345899999999888642
Q ss_pred HhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHH
Q 048642 204 YAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADIL 283 (782)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~ 283 (782)
. ...|..||||||||||||+...+.+ +++.+.||||+|+|++||+|+..+ .++..++++
T Consensus 80 --------------~-~~~D~~gHGThVAgiiAg~~~~~~~----~~~~~~GvAP~A~l~~~kv~~~~g--~~~~~~~i~ 138 (926)
T 1xf1_A 80 --------------G-KTAVDQEHGTHVSGILSGNAPSETK----EPYRLEGAMPEAQLLLMRVEIVNG--LADYARNYA 138 (926)
T ss_dssp --------------S-CCCCSSTTTTHHHHSSCCCCCCCCS----CSCCTTTTCTTSEEEEEECCCCSC--HHHHHHHHH
T ss_pred --------------C-CCCCCCCcHHHHHHHHhCCCccCcc----cCCceEEECCCCEEEEEEeecCCC--CCCcHHHHH
Confidence 1 2228899999999999998654332 135679999999999999998761 124567899
Q ss_pred HHHHHhhhCCCeEEEEccCCCC--CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCC-------------CCcccCC--CC
Q 048642 284 KGFDMAIHDGVDVISVSLGGDP--ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPE-------------LGTVTNV--SP 346 (782)
Q Consensus 284 ~ai~~a~~~g~dVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------------~~~~~~~--~p 346 (782)
+||++|+++|+||||||||... .....+++..++++|+++||+||+||||+|+. ..++.++ +|
T Consensus 139 ~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~ 218 (926)
T 1xf1_A 139 QAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAAD 218 (926)
T ss_dssp HHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTC
T ss_pred HHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCC
Confidence 9999999999999999999873 33456778889999999999999999999963 2334444 79
Q ss_pred cEEEEccccCCccceeeEEe-cCCeEEeeeeccC-CCC-CCcccceEecccccccCCCcccccccCCCCCCCCCccceEE
Q 048642 347 WIITVGASTLDREFQNFVEL-RNGQRFKGTSLSK-SLP-NDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423 (782)
Q Consensus 347 ~vitVgas~~~~~~~~~~~~-~~~~~~~g~~~~~-~~~-~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 423 (782)
|+|+|||++.++.+...+.+ +++....+.++.. ..+ ....+|+++... .|.+..+ .+++||||
T Consensus 219 ~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkiv 284 (926)
T 1xf1_A 219 STLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIA 284 (926)
T ss_dssp CSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEE
T ss_pred ceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEE
Confidence 99999999999998888887 5554443433321 112 256789988532 3776666 68999999
Q ss_pred EEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc-ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccC
Q 048642 424 VCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI-TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNA 502 (782)
Q Consensus 424 l~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 502 (782)
||+|+.|.+.+|..+++++|+.++|++|+....... ......+|+.+|+.++|..|.+ .+..+.++.........
T Consensus 285 l~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~ 360 (926)
T 1xf1_A 285 LIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPT 360 (926)
T ss_dssp EEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEEC
T ss_pred EEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceeccc
Confidence 999999999999999999999999999987543322 2345789999999999998874 44445555444434555
Q ss_pred CCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh---
Q 048642 503 KPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT--- 579 (782)
Q Consensus 503 ~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q--- 579 (782)
...+.++.||||||+. ++++||||+|||++|+++++++ .|..+||||||||||||+||||+|
T Consensus 361 ~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k 425 (926)
T 1xf1_A 361 ASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYE 425 (926)
T ss_dssp SSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcceeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHh
Confidence 6678999999999996 8999999999999999999764 899999999999999999999964
Q ss_pred -hCCCCCHHH----HHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCCCccccCCcchhhhhcccCCCC
Q 048642 580 -AHPDWSPSA----IRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYN 654 (782)
Q Consensus 580 -~~p~~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~ 654 (782)
.||+|+|+| ||++||+||++++..+. ..++++++||+|+||+.+|+++.+ |||..+++
T Consensus 426 ~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~------~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~ 488 (926)
T 1xf1_A 426 TQYPDMTPSERLDLAKKVLMSSATALYDEDE------KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNT 488 (926)
T ss_dssp HSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG------TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSS
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCcccCCC------CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCC
Confidence 599999997 99999999998754321 235678999999999999999854 56766654
Q ss_pred ccceeeeccceecccCCCCCCCCCCCcEEeeccCceEEEEEEEEecCC-C--CeEEEEEeC--CCCceEEEEecEEEEcc
Q 048642 655 QTTIKRFFGTQYECSKSANLEDFNYPSISVPMISGSVTLSRKLKNVGS-P--SNYAASVRE--PLGISVSVEPKILAFKK 729 (782)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~n~ps~~~~~~~~~~t~~~tv~n~~~-~--~ty~~~~~~--~~g~~v~v~p~~~~~~~ 729 (782)
.. +|.++++....+++|||+|+|+ . .+|++++.. +.+..++|+|..|.+..
T Consensus 489 ~~------------------------~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~ 544 (926)
T 1xf1_A 489 SS------------------------KVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETS 544 (926)
T ss_dssp CS------------------------CEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred cc------------------------eeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEecc
Confidence 32 3445554567899999999997 4 567777764 66888888887665544
Q ss_pred -------CCcEEEEEEEEEecC-------CCCCCceEEEEEEEE--cCCc-EEEEEEEEEEccchhh
Q 048642 730 -------IGEEKSFKVTLKPKW-------SGAPDNYRFGELTWT--DGKH-YVRSPIVVNQAQAEAE 779 (782)
Q Consensus 730 -------~~~~~~~~vt~~~~~-------~~~~~~~~~G~i~~~--~~~~-~v~~P~~~~~~~~~~~ 779 (782)
+||+++|+|||++.. .++.+.|+||+|+|+ ++.| .||+||+++.++|..+
T Consensus 545 ~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~~~~~ 611 (926)
T 1xf1_A 545 WQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFGNL 611 (926)
T ss_dssp CEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESCGGGS
T ss_pred CCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecCcccC
Confidence 499999999999751 134667899999999 4555 4999999999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-61 Score=550.24 Aligned_cols=366 Identities=31% Similarity=0.451 Sum_probs=289.2
Q ss_pred CCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHH----------
Q 048642 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEI---------- 99 (782)
Q Consensus 30 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L---------- 99 (782)
.-+|||+|++.... +...++++.+ ..++.++|. .|+||+++++.+++++|
T Consensus 35 ~~~~iV~~~~~~~~------------~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~ 94 (539)
T 3afg_A 35 EVSTIIMFDNQADK------------EKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFG 94 (539)
T ss_dssp EEEEEEEESSHHHH------------HHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---
T ss_pred ceEEEEEECCCCCH------------HHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccc
Confidence 35699999974331 2222333332 256889997 79999999999999999
Q ss_pred -hCCCCeEEEEeccccccccccccccccccc-CCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCcc
Q 048642 100 -AKHPDVVSIFPNKGKKLHTTRSWDFMLLEN-NGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177 (782)
Q Consensus 100 -~~~p~V~~V~~~~~~~~~~~~s~~~~g~~~-~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~ 177 (782)
+++|+|++|++++.+++.... .++.. ..+..+..+|..+.+|+||+|||||||||++||+|.++
T Consensus 95 ~~~~~~V~~v~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~~---------- 160 (539)
T 3afg_A 95 NAQLSGVQFIQEDYVVKVAVET----EGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQGK---------- 160 (539)
T ss_dssp CCCCTTEEEEEECCEEECC---------------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTTT----------
T ss_pred cccCCCeeEEEecccccccCcc----ccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhCC----------
Confidence 899999999999988764321 11111 11223568999999999999999999999999999743
Q ss_pred ccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecC
Q 048642 178 GTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGS 257 (782)
Q Consensus 178 g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvA 257 (782)
+++.++|.++ ...+.|++||||||||||+|+..+ ..+.+.|||
T Consensus 161 ----------------i~~~~d~~~~--------------~~~~~D~~gHGThVAgiiag~~~~-------~~g~~~GvA 203 (539)
T 3afg_A 161 ----------------VIGWVDFVNG--------------KTTPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMA 203 (539)
T ss_dssp ----------------EEEEEETTTC--------------CSSCCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSC
T ss_pred ----------------EeeeEECCCC--------------CCCCCCCCCCHHHHHHHHhCcCcc-------CCCCEEEEC
Confidence 5555555432 235678999999999999997421 134468999
Q ss_pred ccccccccccccCCCCCCCCChhHHHHHHHHhhhC----CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCC
Q 048642 258 PKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD----GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAAN 333 (782)
Q Consensus 258 P~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 333 (782)
|+|+|+.+|++++. |.+..+++++||+||+++ |++|||||||........+++..++.++.++|++||+||||
T Consensus 204 p~A~l~~~kv~~~~---g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN 280 (539)
T 3afg_A 204 PGAKLVGIKVLNGQ---GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGN 280 (539)
T ss_dssp TTCEEEEEECSCTT---SEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCS
T ss_pred CCCEEEEEEeecCC---CCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCC
Confidence 99999999999876 467889999999999976 99999999998854456788999999999999999999999
Q ss_pred CCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCC
Q 048642 334 SGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNG 411 (782)
Q Consensus 334 ~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~ 411 (782)
+|+...++ +...+++|+|||++.
T Consensus 281 ~g~~~~~~~~Pa~~~~vitVgA~~~------------------------------------------------------- 305 (539)
T 3afg_A 281 SGPNKYTVGSPAAASKVITVGAVDK------------------------------------------------------- 305 (539)
T ss_dssp CCSSSSCCCTTTTCSSSEEEEEECT-------------------------------------------------------
T ss_pred CCCCCCcccCCccCCceEEEeeecC-------------------------------------------------------
Confidence 99765443 446789999998542
Q ss_pred CCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceE
Q 048642 412 ALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMG 491 (782)
Q Consensus 412 ~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 491 (782)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHH
Q 048642 492 YITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVA 571 (782)
Q Consensus 492 ~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 571 (782)
.+.++.||||||+. ++++||||+|||++|+++++..... .+.....|..++||||||||||
T Consensus 306 -------------~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VA 366 (539)
T 3afg_A 306 -------------YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVA 366 (539)
T ss_dssp -------------TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHH
T ss_pred -------------CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHH
Confidence 13688999999987 8999999999999999999753210 1111236999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 572 GVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 572 G~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
|++|||+|++|+|+|++||++|++||+++...+ .+++.||+|+||+.+|++.
T Consensus 367 G~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 367 GIAALLLQAHPSWTPDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhh
Confidence 999999999999999999999999999875322 2467899999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=519.36 Aligned_cols=345 Identities=26% Similarity=0.330 Sum_probs=277.5
Q ss_pred CCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEEEE
Q 048642 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIF 109 (782)
Q Consensus 30 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~ 109 (782)
+.+|||.||+.... .++++. ...++.++|. .+++|+++++++++++|+++|+|++|+
T Consensus 2 ~~~~iV~~~~~~~~---------------~~~~~~-------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~ 58 (395)
T 2z2z_A 2 TIRVIVSVDKAKFN---------------PHEVLG-------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVE 58 (395)
T ss_dssp EEEEEEEECTTTCC---------------HHHHHH-------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEE
T ss_pred cEEEEEEECCCccH---------------HHHHHH-------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEE
Confidence 46899999986432 122332 2356889998 699999999999999999999999999
Q ss_pred eccccccccccc-----------ccccccccCCcccCCCccccCCCCCc--eEEEEecCCcCcCCCCccCCCCCCCCCCc
Q 048642 110 PNKGKKLHTTRS-----------WDFMLLENNGVIHSSSAWGKGRFGED--IIIANLDTGVWPESKSFSDEGYGPVPSRW 176 (782)
Q Consensus 110 ~~~~~~~~~~~s-----------~~~~g~~~~~~~~~~~~w~~~~~G~g--V~VaVIDtGid~~Hp~f~~~~~~~~~~~~ 176 (782)
+++.+++..... ...|++..++ ...+|..+ +|+| |+|||||||||++||+|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~---~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~--------- 125 (395)
T 2z2z_A 59 FDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVK---APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------- 125 (395)
T ss_dssp ECCEEEECCEECC------CCSCCCCHHHHHTT---CGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG---------
T ss_pred EeeeecccCCCCcccccccCccccCCcchhhcC---HHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc---------
Confidence 999887653221 1234444332 56789988 9999 99999999999999999753
Q ss_pred cccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceec
Q 048642 177 KGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGG 256 (782)
Q Consensus 177 ~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~Gv 256 (782)
+...++|..+.... +..+..|..||||||||||+|.. ++..+.||
T Consensus 126 -----------------~~~~~~~~~~~~~~---------~~~~~~d~~gHGT~vAgiia~~~---------n~~g~~Gv 170 (395)
T 2z2z_A 126 -----------------IAWCVSTLRGKVST---------KLRDCADQNGHGTHVIGTIAALN---------NDIGVVGV 170 (395)
T ss_dssp -----------------EEEEEECGGGCCBC---------CHHHHBCSSSHHHHHHHHHHCCC---------SSSSCCCS
T ss_pred -----------------cccCccccCCcccC---------CCCCCCCCCCCHHHHHHHHHeec---------CCCceEEE
Confidence 33333343221000 01124678999999999999973 12235899
Q ss_pred CccccccccccccCCCCCCCCChhHHHHHHHHhhhC--------------------CCeEEEEccCCCCCCCCCCHHHHH
Q 048642 257 SPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD--------------------GVDVISVSLGGDPADYFNDGTAIG 316 (782)
Q Consensus 257 AP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a 316 (782)
||+|+|+.+|+++.. |.+..+++++||+||+++ +++|||||||... ....+..+
T Consensus 171 Ap~a~l~~~kv~~~~---g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~a 244 (395)
T 2z2z_A 171 APGVQIYSVRVLDAR---GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDM 244 (395)
T ss_dssp STTCEEEEEECSCTT---SEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHH
T ss_pred CCCCEEEEEEEecCC---CCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHH
Confidence 999999999999876 467889999999999988 9999999999872 24567778
Q ss_pred HHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEeccccc
Q 048642 317 AFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAK 396 (782)
Q Consensus 317 ~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~ 396 (782)
+.++.++|++||+||||+|.....++...+++|+|||++.
T Consensus 245 i~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------------------- 284 (395)
T 2z2z_A 245 IIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS---------------------------------------- 284 (395)
T ss_dssp HHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT----------------------------------------
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC----------------------------------------
Confidence 8889999999999999999877777778899999998542
Q ss_pred ccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhH
Q 048642 397 AANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDG 476 (782)
Q Consensus 397 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g 476 (782)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcc
Q 048642 477 VKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIP 556 (782)
Q Consensus 477 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 556 (782)
.+.++.||+||| +|+|||++|+++++.+ .
T Consensus 285 ----------------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~ 313 (395)
T 2z2z_A 285 ----------------------------NDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------S 313 (395)
T ss_dssp ----------------------------TSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------E
T ss_pred ----------------------------CCCCCcccCCCC----------CEEeCCCCeeeecCCC-------------c
Confidence 247889999997 6799999999999864 8
Q ss_pred eeeeccccchhhHHHHHHHHHHhhCC-------------CCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 557 YNIMSGTSMSCPHVAGVVGLLKTAHP-------------DWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 557 y~~~sGTSmAaP~VAG~aALl~q~~p-------------~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
|..++|||||||||||++|||+|++| .|++.+||++|++||+++... ..++.||||
T Consensus 314 y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~-----------g~~~~~G~G 382 (395)
T 2z2z_A 314 YETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYG 382 (395)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS-----------SSBTTTBTC
T ss_pred eEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC-----------CCCCCccCc
Confidence 99999999999999999999999999 999999999999999987532 236789999
Q ss_pred ccCccccCCC
Q 048642 624 HIRPNRAMDP 633 (782)
Q Consensus 624 ~vd~~~A~~~ 633 (782)
+||+.+|++.
T Consensus 383 ~vd~~~A~~~ 392 (395)
T 2z2z_A 383 VVRAALAVQA 392 (395)
T ss_dssp BCCHHHHHHH
T ss_pred eeCHHHHHHH
Confidence 9999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-56 Score=504.82 Aligned_cols=336 Identities=20% Similarity=0.262 Sum_probs=263.6
Q ss_pred ccEeEEeccceeeEEEEcCHHHHHHHhC-CCCeEEEEecccccccccccc----------cccccccCCcccCCCccccC
Q 048642 74 DAIFYSYQNHINGFAATLEEEEAAEIAK-HPDVVSIFPNKGKKLHTTRSW----------DFMLLENNGVIHSSSAWGKG 142 (782)
Q Consensus 74 ~~i~~~y~~~~ng~s~~~~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s~----------~~~g~~~~~~~~~~~~w~~~ 142 (782)
.++.+.|. .|++|+++++++++++|++ +|+|++|++++.+++...... ..|++..+.. ...+|..+
T Consensus 66 ~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~--~~~~~~~~ 142 (471)
T 3t41_A 66 LNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITN--NGASYDDL 142 (471)
T ss_dssp CEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTT--TTGGGGGC
T ss_pred CEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccC--cHHHHhcc
Confidence 45778886 6999999999999999999 999999999988877543221 1234443321 23689999
Q ss_pred CCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCC
Q 048642 143 RFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTAR 222 (782)
Q Consensus 143 ~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (782)
.+|+||+|||||||||++||+|.++ .|.+. ..++....|.... .+... +...+.
T Consensus 143 ~~G~gv~VaViDtGid~~Hp~~~~~-------~~~~~------------~~~~~~~~~~~~~------~~~~~-~~~~~~ 196 (471)
T 3t41_A 143 PKHANTKIAIIDTGVMKNHDDLKNN-------FSTDS------------KNLVPLNGFRGTE------PEETG-DVHDVN 196 (471)
T ss_dssp CSSCCCCEEEEESCCCTTCTTTTTT-------BCTTC------------EECCCTTCGGGCC------TTCCC-CTTCCC
T ss_pred CCCCCcEEEEEeCCCCCCChhHhcC-------cccCC------------cccccCCCccCCC------cccCC-CCCCCc
Confidence 9999999999999999999999864 11110 1111111121110 00000 234567
Q ss_pred CCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccC
Q 048642 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLG 302 (782)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG 302 (782)
|..||||||||||+|+. .+.||||+|+|+.+|++++. .+..+++++||++|++++++|||||||
T Consensus 197 d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~----~~~~~~i~~ai~~a~~~g~~Vin~S~G 260 (471)
T 3t41_A 197 DRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSK----KTELLWVSKAIVQAANDGNQVINISVG 260 (471)
T ss_dssp CSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSS----CCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCC----CCcHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 89999999999999863 25899999999999999864 688999999999999999999999999
Q ss_pred CCC-CC------------CCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc------------------ccCCCCcEEEE
Q 048642 303 GDP-AD------------YFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT------------------VTNVSPWIITV 351 (782)
Q Consensus 303 ~~~-~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~vitV 351 (782)
... .. ...+.+..++..+.++|++||+||||+|..... .+...+++|+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitV 340 (471)
T 3t41_A 261 SYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTV 340 (471)
T ss_dssp EEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEE
T ss_pred CCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEE
Confidence 741 00 123457778888999999999999999976432 44567899999
Q ss_pred ccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcc
Q 048642 352 GASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTA 431 (782)
Q Consensus 352 gas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 431 (782)
||++.+
T Consensus 341 gA~~~~-------------------------------------------------------------------------- 346 (471)
T 3t41_A 341 GSTDQK-------------------------------------------------------------------------- 346 (471)
T ss_dssp EEECTT--------------------------------------------------------------------------
T ss_pred EeeCCC--------------------------------------------------------------------------
Confidence 985431
Q ss_pred hhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccc
Q 048642 432 RVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASF 511 (782)
Q Consensus 432 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 511 (782)
+.++.|
T Consensus 347 --------------------------------------------------------------------------~~~a~f 352 (471)
T 3t41_A 347 --------------------------------------------------------------------------SNLSEF 352 (471)
T ss_dssp --------------------------------------------------------------------------SSBCTT
T ss_pred --------------------------------------------------------------------------CCCCCc
Confidence 478899
Q ss_pred cCCCCCCCCCCCcCCeEEeCCce----------------------EEEeecCCCCCCCCCCCCCCcceeeeccccchhhH
Q 048642 512 SSAGPNKITPEILKPDITAPGVN----------------------IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPH 569 (782)
Q Consensus 512 Ss~Gp~~~~~~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 569 (782)
|++||+. |||+|||++ |+++++.+ .|..++||||||||
T Consensus 353 S~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~~-------------~~~~~sGTS~AaP~ 412 (471)
T 3t41_A 353 SNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNG-------------RYIYQAGTALATPK 412 (471)
T ss_dssp CCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTTS-------------SEEEECSHHHHHHH
T ss_pred cCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCCC-------------CEEeecchHHHHHH
Confidence 9999963 599999987 89988764 89999999999999
Q ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCCC
Q 048642 570 VAGVVGLLKTAHP-DWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPG 634 (782)
Q Consensus 570 VAG~aALl~q~~p-~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 634 (782)
|||++|||+|++| .++|++||++|++||.+... .++..||||+||+.+|++..
T Consensus 413 VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 413 VSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CCHHHHTTCBBCHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CCcCccccChhCHHHHHHHH
Confidence 9999999999999 89999999999999987632 35679999999999999853
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-56 Score=499.36 Aligned_cols=389 Identities=19% Similarity=0.243 Sum_probs=280.0
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
|++..++ +..+|..+ |+||+|||||||||++||+|.++ ++..+++...
T Consensus 6 W~l~~i~---~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~~~~~~~- 53 (441)
T 1y9z_A 6 WGQTFVG---ATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT- 53 (441)
T ss_dssp HHHHHTT---CSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-
T ss_pred CChhhcC---hhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccCcccCCC-
Confidence 4554443 57889865 77999999999999999999753 1111111100
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccc--cccccccccCCCCCCCCChhHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKA--RVAAYKVCWPQVSDGQCFDADI 282 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~l~~~kv~~~~~~~g~~~~~~i 282 (782)
+ +...+.|..||||||||||+|... +..+.||||+| +|+.+|+++.. |.+..+++
T Consensus 54 ----~-------~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAP~a~~~l~~~kv~~~~---g~~~~~~~ 110 (441)
T 1y9z_A 54 ----G-------NWYQPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEA---GWGYSSSL 110 (441)
T ss_dssp ----C-------CTTCCCSSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETT---EECCSSCH
T ss_pred ----C-------CCCCCCCCCCcHHHHHHHHhcccC---------CCCceEecCCCCCEEEEEEEeCCC---CCcCHHHH
Confidence 0 123567889999999999999752 22358999995 89999999876 45788899
Q ss_pred HHHHHHhhhC-CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccce
Q 048642 283 LKGFDMAIHD-GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQ 361 (782)
Q Consensus 283 ~~ai~~a~~~-g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~ 361 (782)
++||+||+++ |++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+....
T Consensus 111 ~~ai~~a~~~~g~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~ 187 (441)
T 1y9z_A 111 VAAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187 (441)
T ss_dssp HHHHHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBC
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCC
Confidence 9999999999 9999999999873 23456778888999999999999999987777777889999999998775433
Q ss_pred eeEEecCCe-----------------------EEeeeeccCCCC-CC-cccc--eEecccccccCCCcccccccCCC--C
Q 048642 362 NFVELRNGQ-----------------------RFKGTSLSKSLP-ND-TFYP--LITGLQAKAANADDTAASLCKNG--A 412 (782)
Q Consensus 362 ~~~~~~~~~-----------------------~~~g~~~~~~~~-~~-~~~p--l~~~~~~~~~~~~~~~~~~c~~~--~ 412 (782)
.+...+... .+.|.+++.... +. ..++ +.+..... ..........|... .
T Consensus 188 ~~S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~ 266 (441)
T 1y9z_A 188 AFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTS 266 (441)
T ss_dssp TTSCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTE
T ss_pred ccccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhcccccccc
Confidence 222222111 122222221110 00 0000 01100000 00011223457643 5
Q ss_pred CCCCCccceEEEEeeCCc-----chhhhhHHHHHcCceEEEEeccCCCCCc------cccCCCcccEEEEehhhHHHHHH
Q 048642 413 LDHEKVKGKILVCLRGDT-----ARVDKGRQAAVAGAVGMILCNDKSSGNE------ITADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 413 ~~~~~~~gkivl~~~g~~-----~~~~~~~~~~~~Ga~g~i~~n~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~ 481 (782)
++..+++|||++|+|+.+ .+.+|..+++++|+.++|++|+...... .......+|.++++.++|+.|++
T Consensus 267 ~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~ 346 (441)
T 1y9z_A 267 FSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKA 346 (441)
T ss_dssp EECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHT
T ss_pred ccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHH
Confidence 678899999999999876 6789999999999999999998652111 11234679999999999999987
Q ss_pred HHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeec
Q 048642 482 YIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMS 561 (782)
Q Consensus 482 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 561 (782)
++.+. . .+ ++... ..|..++
T Consensus 347 ~~~~~----~-----------------------------------t~--------~~~~~-------------~~y~~~s 366 (441)
T 1y9z_A 347 KLGQS----T-----------------------------------TV--------SNQGN-------------QDYEYYN 366 (441)
T ss_dssp TTTSE----E-----------------------------------EE--------EEEEE-------------ESEEEEC
T ss_pred HhcCC----c-----------------------------------cc--------ccccC-------------CCceeec
Confidence 66321 0 11 11111 2899999
Q ss_pred cccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCCCccccCCc
Q 048642 562 GTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSE 641 (782)
Q Consensus 562 GTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~ 641 (782)
|||||||||||++|||+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+
T Consensus 367 GTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~---------- 425 (441)
T 1y9z_A 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK---------- 425 (441)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH----------
T ss_pred ccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH----------
Confidence 9999999999999999999999999999999999999886543 3568999999999996
Q ss_pred chhhhhcccCCCC
Q 048642 642 DDYLDFLCSIGYN 654 (782)
Q Consensus 642 ~~~~~~~~~~~~~ 654 (782)
||+.|||.+++.
T Consensus 426 -~~~~~lc~~~~~ 437 (441)
T 1y9z_A 426 -AYLDESCTGPTD 437 (441)
T ss_dssp -HHHHHCTTCC--
T ss_pred -HHHHhhhcCCCC
Confidence 599999998864
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-58 Score=524.97 Aligned_cols=339 Identities=20% Similarity=0.229 Sum_probs=58.2
Q ss_pred CeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEEEEe
Q 048642 31 QSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFP 110 (782)
Q Consensus 31 ~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~~ 110 (782)
++|||+||+.... ...+.+.+++.....+. ....++.+.|++.|+||+++++++++++|+++|+|++|++
T Consensus 76 g~YIV~lk~~~~~---------~~~~~~~~~l~a~~~~~-g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vep 145 (692)
T 2p4e_P 76 GTYVVVLKEETHL---------SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEE 145 (692)
T ss_dssp EEEEEEECTTCCH---------HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEE
T ss_pred CcEEEEECCCCCH---------HHHHHHHHHHHHHHhhc-ccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEe
Confidence 4899999987763 33344444444432211 1235789999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCccc-CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCccc
Q 048642 111 NKGKKLHTTRSWDFMLLENNGVIH-SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVR 189 (782)
Q Consensus 111 ~~~~~~~~~~s~~~~g~~~~~~~~-~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~ 189 (782)
++.+... ..+| ++..+.+.. ....|..+.+|+||+|||||||||++||+|.++. .|
T Consensus 146 d~~v~~~-~~pW---gL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~------~~------------- 202 (692)
T 2p4e_P 146 DSSVFAQ-SIPW---NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------MV------------- 202 (692)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred ccccccC-CCCc---chhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCce------Ee-------------
Confidence 9987542 2334 444332211 2347888889999999999999999999998641 00
Q ss_pred ccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCcccccccccccc
Q 048642 190 CNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCW 269 (782)
Q Consensus 190 ~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~ 269 (782)
....+..+ .++ .+ ....+.|.+||||||||||+|+. .||||+|+|+++|+++
T Consensus 203 ------~~~~~~~d---~dg-~~----~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~ 254 (692)
T 2p4e_P 203 ------TDFENVPE---EDG-TR----FHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLN 254 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccccccC---CCC-Cc----ccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeec
Confidence 00000000 000 00 01346789999999999999873 6999999999999998
Q ss_pred CCCCCCCCChhHHHHHHHHhhhC------CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc-c
Q 048642 270 PQVSDGQCFDADILKGFDMAIHD------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV-T 342 (782)
Q Consensus 270 ~~~~~g~~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~ 342 (782)
+. |.++.+++++||+|++++ +++|||||||+.. ...+..++.++.++|++||+||||+|.+.... +
T Consensus 255 ~~---G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sP 327 (692)
T 2p4e_P 255 CQ---GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSP 327 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC---CCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC----cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCc
Confidence 76 467889999999999986 8999999999763 34455666788899999999999999765433 5
Q ss_pred CCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceE
Q 048642 343 NVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKI 422 (782)
Q Consensus 343 ~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki 422 (782)
...|++|+|||++.+...
T Consensus 328 A~~~~vItVGA~d~~~~~-------------------------------------------------------------- 345 (692)
T 2p4e_P 328 ASAPEVITVGATNAQDQP-------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCEEEEEEEcCCCCc--------------------------------------------------------------
Confidence 567999999986543200
Q ss_pred EEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccC
Q 048642 423 LVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNA 502 (782)
Q Consensus 423 vl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 502 (782)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC
Q 048642 503 KPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP 582 (782)
Q Consensus 503 ~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 582 (782)
...-+.||+|||. |||+|||++|+++++... ..|..++|||||||||||++|||+|++|
T Consensus 346 --a~~ss~fSn~G~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P 404 (692)
T 2p4e_P 346 --VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEP 404 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cccccccCCCCCc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCC
Confidence 0011238999984 599999999999998632 2789999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccc
Q 048642 583 DWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 583 ~~sp~~ik~~L~~TA~~~ 600 (782)
+|+|++||++|++||.+.
T Consensus 405 ~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 405 ELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp ------------------
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999999764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=501.02 Aligned_cols=380 Identities=21% Similarity=0.242 Sum_probs=276.3
Q ss_pred CCCCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCH----HHHHHHh--
Q 048642 27 FAIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEE----EEAAEIA-- 100 (782)
Q Consensus 27 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~----~~~~~L~-- 100 (782)
...+++|||+||+... ..++++.. ..++.+++. .+++++++++. +.+++|+
T Consensus 28 ~~~~~~~IV~~k~~~~---------------~~~~~~~~-------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~ 84 (671)
T 1r6v_A 28 EYTEGKILVGYNDRSE---------------VDKIVKAV-------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKAL 84 (671)
T ss_dssp SBCTTEEEEEESSHHH---------------HHHHHHHH-------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTS
T ss_pred ccCCccEEEEECCCcC---------------HHHHHHhc-------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhc
Confidence 3467899999997321 12223222 235677776 78999999865 3356676
Q ss_pred CCCCeEEEEecccccccccc---------------------------cccccccccCCcccCCCc-cccCCCCCceEEEE
Q 048642 101 KHPDVVSIFPNKGKKLHTTR---------------------------SWDFMLLENNGVIHSSSA-WGKGRFGEDIIIAN 152 (782)
Q Consensus 101 ~~p~V~~V~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~-w~~~~~G~gV~VaV 152 (782)
++|+|++|||+..+++.... ....|++..++ +..+ |+. .+|+||+|||
T Consensus 85 ~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~---~~~a~w~~-~tG~gV~VAV 160 (671)
T 1r6v_A 85 ALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEE-ASGTNIIVAV 160 (671)
T ss_dssp CCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHH-CSCTTCEEEE
T ss_pred cCCCceEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccC---Cchhhhhc-cCCCCCEEEE
Confidence 48999999999776543100 01223444332 5566 888 8999999999
Q ss_pred ecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhh
Q 048642 153 LDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTL 232 (782)
Q Consensus 153 IDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVA 232 (782)
||||||++||+|.++ ++..+.+..+. ..+ ...+..|.+|||||||
T Consensus 161 IDTGVd~~HpdL~~~--------------------------~~~g~~~~~~~-----~~p----~~~d~~d~~gHGThVA 205 (671)
T 1r6v_A 161 VDTGVDGTHPDLEGQ--------------------------VIAGYRPAFDE-----ELP----AGTDSSYGGSAGTHVA 205 (671)
T ss_dssp EESCCBTTSGGGTTT--------------------------BCCEEEGGGTE-----EEC----TTCBCCTTCSHHHHHH
T ss_pred EeCCCCCCCcccccc--------------------------EEecccccCCC-----cCC----CCCCCccCCCcchhhh
Confidence 999999999999864 11111111000 000 1123446789999999
Q ss_pred hhhhccCCCCccccccCCCcceecCccccccccccccCC---CCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCCCC
Q 048642 233 STAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQ---VSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309 (782)
Q Consensus 233 Giiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 309 (782)
|||||.. ++..+.||||+|+|+.+|+++.. ...+....+.+++||+||+++|++|||||||... .
T Consensus 206 GiIAa~~---------ng~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~ 273 (671)
T 1r6v_A 206 GTIAAKK---------DGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---Y 273 (671)
T ss_dssp HHHHCCC---------SSSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---C
T ss_pred hhhhccC---------CCCceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---C
Confidence 9999974 12345899999999999999761 1112345667999999999999999999999862 3
Q ss_pred CCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccc
Q 048642 310 NDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYP 388 (782)
Q Consensus 310 ~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p 388 (782)
...+..++.+|.++|+++|+||||+|... ..++...|++|+|||++.+..
T Consensus 274 s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~----------------------------- 324 (671)
T 1r6v_A 274 SYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG----------------------------- 324 (671)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-----------------------------
T ss_pred CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-----------------------------
Confidence 45678888899999999999999999764 455567899999998643210
Q ss_pred eEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccE
Q 048642 389 LITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPA 468 (782)
Q Consensus 389 l~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~ 468 (782)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCC-
Q 048642 469 SQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATE- 547 (782)
Q Consensus 469 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~- 547 (782)
...++.||++||.. ||+|||++|+++++.......
T Consensus 325 ------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~ 360 (671)
T 1r6v_A 325 ------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYE 360 (671)
T ss_dssp ------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCC
T ss_pred ------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccc
Confidence 01478999999976 999999999999886421110
Q ss_pred ----CCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 548 ----LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 548 ----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
.......+.|..++|||||||||||++|||+|++|+++|.+||++|++||+++...+ .+..||+|
T Consensus 361 ~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g-----------~d~~~G~G 429 (671)
T 1r6v_A 361 GHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYG 429 (671)
T ss_dssp CCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTC
T ss_pred cccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC-----------CCCCcccc
Confidence 001112347999999999999999999999999999999999999999999875432 35689999
Q ss_pred ccCccccCCCCccccCCcchh
Q 048642 624 HIRPNRAMDPGLVYDLSEDDY 644 (782)
Q Consensus 624 ~vd~~~A~~~~lv~~~~~~~~ 644 (782)
+||+.+|++..+..+....+|
T Consensus 430 ~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 430 LVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BCCHHHHHHCCCCSSSEEEEE
T ss_pred eeCHHHHhhhhcCCCCCccce
Confidence 999999999877665544444
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=440.08 Aligned_cols=257 Identities=31% Similarity=0.447 Sum_probs=219.2
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|..+++|+||+|+|||||| .+||+|+. ...++|..+
T Consensus 13 ~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~~----------------------------~~~~~~~~~----------- 52 (269)
T 1gci_A 13 APAAHNRGLTGSGVKVAVLDTGI-STHPDLNI----------------------------RGGASFVPG----------- 52 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCC-CCCTTCCE----------------------------EEEEECSTT-----------
T ss_pred cHHHHhcCCCCCCCEEEEECCCC-CCCHhhcc----------------------------cCCcccCCC-----------
Confidence 56899999999999999999999 89999941 122233221
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
...+.|..||||||||||+|.. +...+.||||+|+|+.+|+++.. +.+..+++++||+|++++++
T Consensus 53 ---~~~~~d~~gHGT~vAgiia~~~---------~~~~~~GvAp~a~l~~~~v~~~~---g~~~~~~~~~ai~~a~~~~~ 117 (269)
T 1gci_A 53 ---EPSTQDGNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGAS---GSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp ---CCSCSCSSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTT---SCBCHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCChHHHHHHHhcCc---------CCCCcEEeCCCCEEEEEEeECCC---CCcCHHHHHHHHHHHHHCCC
Confidence 2235688999999999999973 12335899999999999999876 46788899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.
T Consensus 118 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------ 176 (269)
T 1gci_A 118 HVANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------ 176 (269)
T ss_dssp SEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT------------------
T ss_pred eEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC------------------
Confidence 99999999873 245677888889999999999999999877677777899999998542
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
.+.++.||++||.. ||+|||++
T Consensus 177 --------------------------------------------------~~~~~~~S~~G~~~--------di~APG~~ 198 (269)
T 1gci_A 177 --------------------------------------------------NNNRASFSQYGAGL--------DIVAPGVN 198 (269)
T ss_dssp --------------------------------------------------TSCBCTTCCCSTTE--------EEEEECSS
T ss_pred --------------------------------------------------CCCCCCCCCCCCCc--------ceEecCCC
Confidence 14678999999975 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (782)
|+++++.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||+++.
T Consensus 199 i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g------------- 252 (269)
T 1gci_A 199 VQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------------- 252 (269)
T ss_dssp EEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-------------
T ss_pred eEeecCCC-------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-------------
Confidence 99998764 8999999999999999999999999999999999999999999863
Q ss_pred CCCCcccccccCccccCC
Q 048642 615 ATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 615 ~~~~~~G~G~vd~~~A~~ 632 (782)
+++.||+|+||+.+|++
T Consensus 253 -~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 -STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -CHHHHTTCBCCHHHHTC
T ss_pred -CCCCcccCccCHHHHcC
Confidence 35689999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-53 Score=442.78 Aligned_cols=258 Identities=31% Similarity=0.443 Sum_probs=217.2
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 13 ~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~----------- 53 (274)
T 1r0r_E 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVAG----------- 53 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECSTT-----------
T ss_pred CHHHHhcCCCCCCCEEEEEcCCCCCCCHhHcC----------------------------CCCccccCC-----------
Confidence 56899999999999999999999999999941 122233221
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
.....|..||||||||||+|.. +...+.||||+|+|+.+|+++.. +.+..+++++||+|++++++
T Consensus 54 ---~~~~~d~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~~v~~~~---g~~~~~~i~~ai~~a~~~~~ 118 (274)
T 1r0r_E 54 ---EAYNTDGNGHGTHVAGTVAALD---------NTTGVLGVAPSVSLYAVKVLNSS---GSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp ---CCTTCCSSSHHHHHHHHHHCCS---------SSSBCCCSSTTSEEEEEECSCTT---SEECHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCCHHHHHHHHHccC---------CCCceEEECCCCEEEEEEEECCC---CCccHHHHHHHHHHHHHcCC
Confidence 2235688999999999999973 12345899999999999999876 45778899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC----CcccCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL----GTVTNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
+|||||||... ....+..++.++.++|+++|+||||+|... ..++...+++|+|||++.
T Consensus 119 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 181 (274)
T 1r0r_E 119 DVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS-------------- 181 (274)
T ss_dssp SEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT--------------
T ss_pred CEEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC--------------
Confidence 99999999873 245678888899999999999999999752 334456789999998542
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.++.||++||.+ ||+|
T Consensus 182 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 199 (274)
T 1r0r_E 182 ------------------------------------------------------NSNRASFSSVGAEL--------EVMA 199 (274)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcCccCCCCCCc--------eEEe
Confidence 14678999999854 9999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
||++|+++++.+ .|..++|||||||||||++|||+|++|++++++||++|++||+++.
T Consensus 200 PG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g--------- 257 (274)
T 1r0r_E 200 PGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------- 257 (274)
T ss_dssp ECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------
T ss_pred CCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC---------
Confidence 999999998764 8999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCcccccccCccccCC
Q 048642 611 SFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
++..||+|+||+.+|++
T Consensus 258 -----~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 -----SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCccCHHHHhC
Confidence 36789999999999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-52 Score=439.94 Aligned_cols=260 Identities=31% Similarity=0.365 Sum_probs=213.5
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|+.+..|+||+|||||||||++||+|.++ ++..++|.+
T Consensus 20 ~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~--------------------------~~~~~~~~~------------ 61 (280)
T 1dbi_A 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVD------------ 61 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTT------------
T ss_pred cHHHHhhcCCCCCCEEEEEeCCcCCCChhhccC--------------------------cccceeccC------------
Confidence 578999988888999999999999999999753 333344432
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..||||||||||+|...+ ...+.||||+|+|+.+|+++.. |.+..+++++||+||+++|+
T Consensus 62 --~~~~~~d~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~kv~~~~---g~~~~~~i~~ai~~a~~~g~ 128 (280)
T 1dbi_A 62 --NDYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRN---GSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp --TBSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTT---SCCCHHHHHHHHHHHHHTTC
T ss_pred --CCCCCCCCCCcHHHHHHHHhCcCCC--------CCcceEeCCCCEEEEEEEECCC---CCcCHHHHHHHHHHHHHCCC
Confidence 1234678899999999999997532 2235899999999999999876 46788999999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 129 ~Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------- 188 (280)
T 1dbi_A 129 EVINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------- 188 (280)
T ss_dssp SEEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------------
T ss_pred CEEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC-----------------
Confidence 99999999872 3456788888999999999999999997766667778999999985421
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+.++.||++||.. ||+|||++
T Consensus 189 ---------------------------------------------------~~~~~~S~~G~~~--------dv~ApG~~ 209 (280)
T 1dbi_A 189 ---------------------------------------------------DRLASFSNYGTWV--------DVVAPGVD 209 (280)
T ss_dssp ---------------------------------------------------SCBCTTBCCSTTC--------CEEEECSS
T ss_pred ---------------------------------------------------CCcCCCCCCCCCc--------eEEEecCC
Confidence 4678999999865 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (782)
|+++++.+ .|..++|||||||||||++|||++ |.+++.+||++|++||+++...
T Consensus 210 i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~----------- 263 (280)
T 1dbi_A 210 IVSTITGN-------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT----------- 263 (280)
T ss_dssp EEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB-----------
T ss_pred eEeecCCC-------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC-----------
Confidence 99998764 899999999999999999999987 8999999999999999987522
Q ss_pred CCCCcccccccCccccCC
Q 048642 615 ATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 615 ~~~~~~G~G~vd~~~A~~ 632 (782)
...||+|+||+.+|++
T Consensus 264 --~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 264 --GTYFKYGRINSYNAVT 279 (280)
T ss_dssp --TTTBSSEECCHHHHHT
T ss_pred --CCcccCCEECHHHHhc
Confidence 3579999999999986
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=442.28 Aligned_cols=267 Identities=31% Similarity=0.446 Sum_probs=221.2
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
|++..++ +..+|..+++|+||+|||||||||++||+|+. ...+.|..+
T Consensus 6 w~l~~i~---~~~~~~~g~~G~gv~VaViDtGid~~h~~l~~----------------------------~~g~~~~~~- 53 (281)
T 1to2_E 6 YGVSQIK---APALHSQGYTGSNVKVAVIDSGIDSSHPDLKV----------------------------AGGASMVPS- 53 (281)
T ss_dssp HHHHHTT---HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECCTT-
T ss_pred cchhhcC---hHHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC----------------------------cCCccccCC-
Confidence 4554443 56899999999999999999999999999952 112222211
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK 284 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ 284 (782)
+.....|..||||||||||+|.. +...+.||||+|+|+.+|+++.. +.+..+++++
T Consensus 54 ------------~~~~~~d~~gHGT~vAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~---g~~~~~~i~~ 109 (281)
T 1to2_E 54 ------------ETNPFQDNNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGAD---GSGQYSWIIN 109 (281)
T ss_dssp ------------CCCTTCCSSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTT---SEECHHHHHH
T ss_pred ------------CCCCCCCCCCcHHHHHHHHhccC---------CCCcceeeCCCCEEEEEEEeCCC---CCccHHHHHH
Confidence 11223688999999999999973 12345899999999999999876 4577889999
Q ss_pred HHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC----CcccCCCCcEEEEccccCCccc
Q 048642 285 GFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL----GTVTNVSPWIITVGASTLDREF 360 (782)
Q Consensus 285 ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgas~~~~~~ 360 (782)
+|+|+++++++|||||||... ....+..++.++.++|++||+||||+|... ..++...|++|+|||++.
T Consensus 110 ai~~a~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~---- 182 (281)
T 1to2_E 110 GIEWAIANNMDVINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS---- 182 (281)
T ss_dssp HHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT----
T ss_pred HHHHHHHCCCcEEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC----
Confidence 999999999999999999873 346778888899999999999999999752 334456789999998542
Q ss_pred eeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHH
Q 048642 361 QNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAA 440 (782)
Q Consensus 361 ~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 440 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCC
Q 048642 441 VAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKIT 520 (782)
Q Consensus 441 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 520 (782)
.+.++.||++||..
T Consensus 183 ----------------------------------------------------------------~~~~~~fS~~G~~~-- 196 (281)
T 1to2_E 183 ----------------------------------------------------------------SNQRASFSSVGPEL-- 196 (281)
T ss_dssp ----------------------------------------------------------------TSCBCTTCCCSTTC--
T ss_pred ----------------------------------------------------------------CCCcCCcCCCCCCc--
Confidence 14678999999965
Q ss_pred CCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 048642 521 PEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 521 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 600 (782)
||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++
T Consensus 197 ------di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 257 (281)
T 1to2_E 197 ------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 257 (281)
T ss_dssp ------CEEEECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCC
T ss_pred ------eEEecCCCeEeecCCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCccc
Confidence 9999999999998764 899999999999999999999999999999999999999999986
Q ss_pred cCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 601 DNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 601 ~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
. +++.||||+||+.+|++.
T Consensus 258 g--------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 258 G--------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp S--------------CHHHHTTCBCCHHHHTSS
T ss_pred C--------------CCCCcccceecHHHHhhh
Confidence 3 367899999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=465.64 Aligned_cols=305 Identities=20% Similarity=0.190 Sum_probs=200.7
Q ss_pred CCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccc-----cccccchhhHhhhccc
Q 048642 136 SSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKL-----IGARYFNRAYAAYVKQ 210 (782)
Q Consensus 136 ~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki-----~g~~~~~~~~~~~~~~ 210 (782)
.++|+.+..|++|+|||||||||++||+|++..+.+....|+..++.........+..+ .+.......+...
T Consensus 21 ~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (357)
T 4h6x_A 21 ADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVI--- 97 (357)
T ss_dssp HHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHHC---
T ss_pred HHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCcccccccccccccccc---
Confidence 37899999999999999999999999999987666667777765543321000000000 0000000000000
Q ss_pred ccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCC--CCCCChhHHHHHHHH
Q 048642 211 HNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS--DGQCFDADILKGFDM 288 (782)
Q Consensus 211 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~--~g~~~~~~i~~ai~~ 288 (782)
+ +..++.|.+||||||||||+|+. ++.+.||||+|+|+.+|++..... .+.+...++++||+|
T Consensus 98 -~----~~~~~~D~~gHGThVAGiiag~~----------~~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~ 162 (357)
T 4h6x_A 98 -P----DTKDRIVLNDHACHVTSTIVGQE----------HSPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDL 162 (357)
T ss_dssp -T----TTHHHHHHHHHHHHHHHHHHCCT----------TSSCCCSCTTSEEEEEECTTC----------CHHHHHHHHH
T ss_pred -C----CCCCCcCCCCcHHHHHHHHhccC----------CCCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHH
Confidence 0 22345578899999999999974 234589999999999999754311 023456678999999
Q ss_pred hhhCCCeEEEEccCCCC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEec
Q 048642 289 AIHDGVDVISVSLGGDP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELR 367 (782)
Q Consensus 289 a~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~ 367 (782)
|+++|++|||||||... .....+.+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 163 a~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----------- 231 (357)
T 4h6x_A 163 ALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV----------- 231 (357)
T ss_dssp HHHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-----------
T ss_pred HHHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-----------
Confidence 99999999999999873 344567788888899999999999999999877777778899999998543
Q ss_pred CCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEE
Q 048642 368 NGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGM 447 (782)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~ 447 (782)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCe
Q 048642 448 ILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPD 527 (782)
Q Consensus 448 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPD 527 (782)
.+.++.|||||+. ..|||
T Consensus 232 ---------------------------------------------------------~~~~~~fSn~G~~-----~~~~d 249 (357)
T 4h6x_A 232 ---------------------------------------------------------DGTPCHFSNWGGN-----NTKEG 249 (357)
T ss_dssp ---------------------------------------------------------TSSBCTTCC---C-----TTTTE
T ss_pred ---------------------------------------------------------CCcccccccCCCC-----CCccc
Confidence 2478899999975 35899
Q ss_pred EEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccccCC
Q 048642 528 ITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTTARTRDNT 603 (782)
Q Consensus 528 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~ik~~L~~TA~~~~~~ 603 (782)
|+|||++|+++++.+ ..|..++|||||||||||++|||+++ +|.|+++|||++|++||++++..
T Consensus 250 i~APG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~ 317 (357)
T 4h6x_A 250 ILAPGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE 317 (357)
T ss_dssp EEEECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-------
T ss_pred eeecCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC
Confidence 999999999998764 26778999999999999999999954 56899999999999999987533
Q ss_pred CCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 604 ANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 604 g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
. ...+.+||+|+||+.+|++
T Consensus 318 ~---------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 318 V---------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----------------CTTCBCCHHHHHH
T ss_pred C---------CCCcccceeEEecHHHHHH
Confidence 2 2346789999999999997
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=450.27 Aligned_cols=273 Identities=26% Similarity=0.366 Sum_probs=220.3
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
|++..++ +..+|..+.+|+||+|||||||||++||+|.++ +...++|..++
T Consensus 23 w~l~~i~---~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~~~ 73 (327)
T 2x8j_A 23 MGVEIVE---APAVWRASAKGAGQIIGVIDTGCQVDHPDLAER--------------------------IIGGVNLTTDY 73 (327)
T ss_dssp HHHHHTT---HHHHHHHHGGGTTCEEEEEESCCCTTCTTTGGG--------------------------EEEEEECSSGG
T ss_pred cchhhcC---hHHHHhcCCCCCCCEEEEEcCCCCCCChhHhhc--------------------------ccCCccccCCC
Confidence 4555443 568999999999999999999999999999743 44444554432
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK 284 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ 284 (782)
.. +.....|..||||||||||+|.. ++..+.||||+|+|+.+|+++.. |.+..+++++
T Consensus 74 ~~----------~~~~~~d~~gHGT~VAgiia~~~---------~~~g~~GvAp~a~l~~~kv~~~~---g~~~~~~i~~ 131 (327)
T 2x8j_A 74 GG----------DETNFSDNNGHGTHVAGTVAAAE---------TGSGVVGVAPKADLFIIKALSGD---GSGEMGWIAK 131 (327)
T ss_dssp GG----------CTTCCCCSSSHHHHHHHHHHCCC---------CSSBCCCSSTTCEEEEEECSCTT---SEECHHHHHH
T ss_pred CC----------CCCCCCCCCCchHHHHHHHhccC---------CCCCcEeeCCCCEEEEEEeECCC---CCcCHHHHHH
Confidence 11 12245688999999999999984 12345899999999999999876 4577889999
Q ss_pred HHHHhhh------CCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-----CcccCCCCcEEEEcc
Q 048642 285 GFDMAIH------DGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-----GTVTNVSPWIITVGA 353 (782)
Q Consensus 285 ai~~a~~------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVga 353 (782)
||+||++ .+++|||||||... ....+..++.++.++|++||+||||+|... ..++...+++|+|||
T Consensus 132 ai~~a~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga 208 (327)
T 2x8j_A 132 AIRYAVDWRGPKGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208 (327)
T ss_dssp HHHHHHHCCCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEE
T ss_pred HHHHHHhhcccccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEE
Confidence 9999999 89999999999873 245677888889999999999999999652 334556789999998
Q ss_pred ccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchh
Q 048642 354 STLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARV 433 (782)
Q Consensus 354 s~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~ 433 (782)
++.+
T Consensus 209 ~~~~---------------------------------------------------------------------------- 212 (327)
T 2x8j_A 209 VDFD---------------------------------------------------------------------------- 212 (327)
T ss_dssp ECTT----------------------------------------------------------------------------
T ss_pred ECCC----------------------------------------------------------------------------
Confidence 5431
Q ss_pred hhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccC
Q 048642 434 DKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSS 513 (782)
Q Consensus 434 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs 513 (782)
+.++.||+
T Consensus 213 ------------------------------------------------------------------------~~~~~fS~ 220 (327)
T 2x8j_A 213 ------------------------------------------------------------------------LRLSDFTN 220 (327)
T ss_dssp ------------------------------------------------------------------------CCBSCC--
T ss_pred ------------------------------------------------------------------------CCCCCccC
Confidence 46789999
Q ss_pred CCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh-----CCCCCHHH
Q 048642 514 AGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA-----HPDWSPSA 588 (782)
Q Consensus 514 ~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~p~~sp~~ 588 (782)
+||.+ ||+|||++|+++++.+ .|..++|||||||||||++|||+|+ +|.+++.+
T Consensus 221 ~G~~~--------di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~ 279 (327)
T 2x8j_A 221 TNEEI--------DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETE 279 (327)
T ss_dssp -CCCC--------SEEEECSSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHH
T ss_pred CCCCc--------eEecCcCceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHH
Confidence 99854 9999999999998764 8999999999999999999999999 99999999
Q ss_pred HHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 589 IRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 589 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
||++|++||+++. .++..||+|+||+.+|++.
T Consensus 280 v~~~L~~tA~~~g-------------~~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 280 IYAQLVRRATPIG-------------FTAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHTTEECCS-------------SCHHHHTTCEECTTHHHHH
T ss_pred HHHHHHHhCccCC-------------CCCCceeeeEECHHHHHHh
Confidence 9999999999763 2467899999999999973
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=434.89 Aligned_cols=259 Identities=32% Similarity=0.438 Sum_probs=219.3
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|+.. +|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 20 ~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~~----------- 61 (279)
T 1thm_A 20 APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVDN----------- 61 (279)
T ss_dssp HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTTT-----------
T ss_pred hHHHHhcC-CCCCCEEEEEccCCCCCCcchhcC--------------------------ccccccccCC-----------
Confidence 56889887 799999999999999999999753 3333444321
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
...+.|..||||||||||+|...+ ...+.||||+|+|+.+|+++.. |.+..+++++||+||+++|+
T Consensus 62 ---~~~~~d~~gHGT~vAgiia~~~~n--------~~g~~GvAp~a~l~~~~v~~~~---g~~~~~~~~~ai~~a~~~g~ 127 (279)
T 1thm_A 62 ---DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLDNS---GSGTWTAVANGITYAADQGA 127 (279)
T ss_dssp ---BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCcHHHHHHHHhCccCC--------CCccEEeCCCCEEEEEEeeCCC---CCccHHHHHHHHHHHHHCCC
Confidence 234578899999999999998532 2235899999999999999876 46788899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||... ....+..++.++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 128 ~Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------- 187 (279)
T 1thm_A 128 KVISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN----------------- 187 (279)
T ss_dssp SEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-----------------
T ss_pred CEEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC-----------------
Confidence 99999999872 3456788888999999999999999998777777778999999985421
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+.++.||++||.. ||+|||++
T Consensus 188 ---------------------------------------------------~~~~~fS~~G~~~--------dv~APG~~ 208 (279)
T 1thm_A 188 ---------------------------------------------------DNKSSFSTYGSWV--------DVAAPGSS 208 (279)
T ss_dssp ---------------------------------------------------SCBCTTCCCCTTC--------CEEEECSS
T ss_pred ---------------------------------------------------CCcCCcCCCCCce--------EEEEcCCC
Confidence 4678999999865 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (782)
|+++++.. .|..++|||||||||||++||| ++|.+++++||++|++||+++...+
T Consensus 209 i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~---------- 263 (279)
T 1thm_A 209 IYSTYPTS-------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG---------- 263 (279)
T ss_dssp EEEEETTT-------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT----------
T ss_pred eEEEeCCC-------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC----------
Confidence 99999764 8999999999999999999999 5899999999999999999875332
Q ss_pred CCCCcccccccCccccCC
Q 048642 615 ATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 615 ~~~~~~G~G~vd~~~A~~ 632 (782)
..||+|+||+.+|++
T Consensus 264 ---~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 264 ---TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ---TTBSSEECCHHHHHH
T ss_pred ---ccccCCeeCHHHHhc
Confidence 478999999999985
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=443.40 Aligned_cols=273 Identities=29% Similarity=0.397 Sum_probs=222.8
Q ss_pred cccccCCcccCCCccccCCCCC--ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchh
Q 048642 125 MLLENNGVIHSSSAWGKGRFGE--DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNR 202 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~--gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~ 202 (782)
|++..++ +..+|+.+ +|+ ||+|||||||||++||+|.++ +....+|..
T Consensus 10 W~l~~i~---~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~--------------------------~~~~~~~~~ 59 (320)
T 2z30_A 10 WGIERVK---APSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN--------------------------IAWCVSTLR 59 (320)
T ss_dssp HHHHHTT---CGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG--------------------------EEEEEECGG
T ss_pred CChhhcC---hHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc--------------------------cccCccccC
Confidence 4554443 67899988 999 999999999999999999753 323333332
Q ss_pred hHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHH
Q 048642 203 AYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADI 282 (782)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i 282 (782)
+.... +.....|..||||||||||+|.. ++..+.||||+|+|+.+|+++.. |.+..+++
T Consensus 60 ~~~~~---------~~~~~~d~~gHGT~vAgiia~~~---------n~~g~~GvAp~a~l~~~~v~~~~---g~~~~~~i 118 (320)
T 2z30_A 60 GKVST---------KLRDCADQNGHGTHVIGTIAALN---------NDIGVVGVAPGVQIYSVRVLDAR---GSGSYSDI 118 (320)
T ss_dssp GCCBC---------CHHHHBCSSSHHHHHHHHHHCCS---------SSBSCCCSSTTCEEEEEECSCTT---SEEEHHHH
T ss_pred CccCC---------CCCCCCCCCCCHHHHHHHHHccc---------CCCceEeeCCCCEEEEEEeeCCC---CCccHHHH
Confidence 21000 01123578999999999999973 12335899999999999999876 46788899
Q ss_pred HHHHHHhhhC--------------------CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc
Q 048642 283 LKGFDMAIHD--------------------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT 342 (782)
Q Consensus 283 ~~ai~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~ 342 (782)
++||+||+++ +++|||||||... ....+..++.++.++|++||+||||+|.....++
T Consensus 119 ~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~P 195 (320)
T 2z30_A 119 AIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 195 (320)
T ss_dssp HHHHHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred HHHHHHHHhCcccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCc
Confidence 9999999987 9999999999873 2456777888899999999999999998777777
Q ss_pred CCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceE
Q 048642 343 NVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKI 422 (782)
Q Consensus 343 ~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki 422 (782)
...|++|+|||++.
T Consensus 196 a~~~~vi~Vga~~~------------------------------------------------------------------ 209 (320)
T 2z30_A 196 AAYPEVIAVGAIDS------------------------------------------------------------------ 209 (320)
T ss_dssp TTSTTEEEEEEECT------------------------------------------------------------------
T ss_pred ccCCCeEEEEeeCC------------------------------------------------------------------
Confidence 78899999998542
Q ss_pred EEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccC
Q 048642 423 LVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNA 502 (782)
Q Consensus 423 vl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 502 (782)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-
Q 048642 503 KPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH- 581 (782)
Q Consensus 503 ~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~- 581 (782)
.+.++.||++|| +|+|||++|+++++.+ .|..++|||||||||||++|||+|++
T Consensus 210 --~~~~~~~S~~g~----------~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~ 264 (320)
T 2z30_A 210 --NDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYY 264 (320)
T ss_dssp --TSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcCcccCCCC----------CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhch
Confidence 146789999997 7899999999999764 89999999999999999999999999
Q ss_pred ------------CCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 582 ------------PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 582 ------------p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
|.+++.+||++|++||+++... ..+..||+|+||+.+|++.
T Consensus 265 ~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 265 QKYGKILPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred hhcccccccccCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999987432 2466899999999999864
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=435.24 Aligned_cols=266 Identities=22% Similarity=0.246 Sum_probs=211.5
Q ss_pred CCCC-CceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC
Q 048642 142 GRFG-EDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 142 ~~~G-~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (782)
..+| +||+|||||||||++||+|+++ .+....+... . ....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~---~---------~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA--------------------------DLTVLPTLAP---T---------AARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC--------------------------EEEECCCSSC---C---------CCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC--------------------------eeecCcCCCC---C---------CCCC
Confidence 3478 6999999999999999999754 1111111100 0 1122
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEc
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVS 300 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~S 300 (782)
..|.+||||||||||+|+. +..+.||||+|+|+.+|++.+.. +......+++||+||++++++|||||
T Consensus 45 d~~~~gHGT~VAGiiag~~----------~~~~~GvAp~a~l~~~kv~~~~~--~~~~~~~i~~ai~~a~~~~~~Vin~S 112 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQP----------ETSVPGIAPQCRGLIVPIFSDDR--RRITQLDLARGIERAVNAGAHIINIS 112 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEEEECSCSSS--SCCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCcccceeehhhccC----------CceeeeeccccceEeeEeecccc--ccchHHHHHHHHHHhhccCCeEEecc
Confidence 3356799999999999974 22458999999999999986553 24677889999999999999999999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccC
Q 048642 301 LGGDP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSK 379 (782)
Q Consensus 301 lG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (782)
||... .......+..++..+.++|+++|+||||+|......+...+++|+|||++.
T Consensus 113 ~G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------------- 169 (282)
T 3zxy_A 113 GGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD----------------------- 169 (282)
T ss_dssp CCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-----------------------
T ss_pred CccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-----------------------
Confidence 99762 333455677788889999999999999999877777778899999998542
Q ss_pred CCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc
Q 048642 380 SLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459 (782)
Q Consensus 380 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 459 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEee
Q 048642 460 TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAF 539 (782)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~ 539 (782)
.+.++.||+||+. ..||||+|||++|++++
T Consensus 170 ---------------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~ 199 (282)
T 3zxy_A 170 ---------------------------------------------HGHPLDFSNWGST-----YEQQGILAPGEDILGAK 199 (282)
T ss_dssp ---------------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSSEEEEC
T ss_pred ---------------------------------------------CCccccccCCCCC-----ccccceeccCcceeeec
Confidence 2467889999974 46889999999999999
Q ss_pred cCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHhccccccCCCCCCCCCCCCCC
Q 048642 540 TGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH----PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKA 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 615 (782)
+.+ .|..++|||||||||||++|||+|++ |.++|++||++|++||++++... +.
T Consensus 200 ~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~---------~~ 257 (282)
T 3zxy_A 200 PGG-------------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDA---------PE 257 (282)
T ss_dssp TTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC---------------
T ss_pred CCC-------------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCC---------CC
Confidence 875 89999999999999999999999875 78999999999999998875321 33
Q ss_pred CCCcccccccCccccCC
Q 048642 616 TPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 616 ~~~~~G~G~vd~~~A~~ 632 (782)
....+|+|+||+.+|++
T Consensus 258 ~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 258 QARRCLAGRLNVSGAFT 274 (282)
T ss_dssp -CGGGTTCBCCHHHHHH
T ss_pred ccCceeeeEeCHHHHHH
Confidence 46789999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=432.28 Aligned_cols=282 Identities=27% Similarity=0.348 Sum_probs=223.8
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|..+.+|+||+|||||||||++||+|.++ +...++|......
T Consensus 15 ~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~--------------------------~~~~~~~~~~~~~-------- 60 (310)
T 2ixt_A 15 NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGATTP-------- 60 (310)
T ss_dssp TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSSSC--------
T ss_pred chhhhhccCCCCCcEEEEEecCCCCCCHHHhhc--------------------------ccccccccCCCCC--------
Confidence 678999999999999999999999999999753 3233334321000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
......|..||||||||||+|...+ +...+.||||+|+|+.+|++... |.+..+++++||+|++++++
T Consensus 61 --~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~---g~~~~~~~~~ai~~a~~~~~ 128 (310)
T 2ixt_A 61 --INNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS---GSGYSDDIAAAIRHAADQAT 128 (310)
T ss_dssp --EETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT---SCCCHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCC---CCCcHHHHHHHHHHHHHhhh
Confidence 1224568899999999999998421 23346899999999999999876 45788999999999999988
Q ss_pred -----eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC--CcccCCCCcEEEEccccCCccceeeEEec
Q 048642 295 -----DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL--GTVTNVSPWIITVGASTLDREFQNFVELR 367 (782)
Q Consensus 295 -----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgas~~~~~~~~~~~~~ 367 (782)
+|||||||... ....+..++.++.++|++||+||||+|... ..++...+++|+|||++....
T Consensus 129 ~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~-------- 197 (310)
T 2ixt_A 129 ATGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ-------- 197 (310)
T ss_dssp HHTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE--------
T ss_pred ccCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc--------
Confidence 99999999873 245677888889999999999999999763 344556799999998542100
Q ss_pred CCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEE
Q 048642 368 NGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGM 447 (782)
Q Consensus 368 ~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~ 447 (782)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCC--ccccccCCCCCCCC----C
Q 048642 448 ILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSP--FMASFSSAGPNKIT----P 521 (782)
Q Consensus 448 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----~ 521 (782)
.+ .++.||++||.... .
T Consensus 198 ---------------------------------------------------------~g~~~~~~~S~~G~~~~~g~~~~ 220 (310)
T 2ixt_A 198 ---------------------------------------------------------NGTYRVADYSSRGYISTAGDYVI 220 (310)
T ss_dssp ---------------------------------------------------------TTEEEECTTSCCCCTTTTTSSSC
T ss_pred ---------------------------------------------------------CCCeeeccccCCCCccCCccccc
Confidence 12 67889999985321 1
Q ss_pred CCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 048642 522 EILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601 (782)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~ 601 (782)
.+.||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||++++
T Consensus 221 ~~~~~di~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 287 (310)
T 2ixt_A 221 QEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287 (310)
T ss_dssp CTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSC
T ss_pred cCCCeeEECCCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC
Confidence 235999999999999998764 8999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCc
Q 048642 602 NTANPMRDGSFKKATPFSYGSGHIRP 627 (782)
Q Consensus 602 ~~g~~~~~~~~~~~~~~~~G~G~vd~ 627 (782)
..+. ....+..+..+|||++|+
T Consensus 288 ~~~~----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 288 IKGG----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp CCBS----TTCCSSSBTTTBTCBCCC
T ss_pred CCCC----cccccCCccccccceeec
Confidence 4321 112355788999999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-51 Score=438.10 Aligned_cols=273 Identities=22% Similarity=0.254 Sum_probs=220.0
Q ss_pred CCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccc
Q 048642 136 SSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISV 215 (782)
Q Consensus 136 ~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 215 (782)
.++|+.+..++||+|||||||||++||+|.++ .+.+..++..+
T Consensus 11 ~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~-------------------------~~~~~~~~~~~------------ 53 (306)
T 4h6w_A 11 KKLWSETRGDPKICVAVLDGIVDQNHPCFIGA-------------------------DLTRLPSLVSG------------ 53 (306)
T ss_dssp HHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC-------------------------EEEECC-----------------
T ss_pred HHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC-------------------------cccCCCcccCC------------
Confidence 47999987779999999999999999999754 12222222221
Q ss_pred cCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCe
Q 048642 216 NFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVD 295 (782)
Q Consensus 216 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~d 295 (782)
+.....|..||||||||||+|+. ++.+.||||+|+|+.+|++.+.. +.+....+++||+||++++++
T Consensus 54 -~~~~~~d~~gHGThVAGiiag~~----------~~~~~GVAp~a~l~~~kv~~~~~--~~~~~~~i~~ai~~a~~~g~~ 120 (306)
T 4h6w_A 54 -EANANGSMSTHGTHVASIIFGQH----------DSPVTGIAPQCRGLIVPVFADES--LKLSQLDLSRAIEQAVNNGAN 120 (306)
T ss_dssp ------CCCCHHHHHHHHHHHCCT----------TSSSCCSSTTSEEEECCCCCSSS--CCCCHHHHHHHHHHHHHTTCS
T ss_pred -CCCCCCCCCCchHHHHHHHHccc----------cCCcceeccccccceeecccccc--ccchHHHHHHHHHHhhcccce
Confidence 12234577899999999999974 23458999999999999986552 356788899999999999999
Q ss_pred EEEEccCCC-CCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 296 VISVSLGGD-PADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 296 VIn~SlG~~-~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
|||+|||.. ........+..++..+.++|+++|+||||+|.....++...+++|+|||++..
T Consensus 121 vi~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~----------------- 183 (306)
T 4h6w_A 121 IINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ----------------- 183 (306)
T ss_dssp EEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-----------------
T ss_pred eeeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-----------------
Confidence 999999976 23344566788888999999999999999998776777778999999985432
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+.++.||++|+. ..||||+|||++
T Consensus 184 ---------------------------------------------------~~~~~~s~~g~~-----~~~~di~APG~~ 207 (306)
T 4h6w_A 184 ---------------------------------------------------GKPVDFSNWGDA-----YQKQGILAPGKD 207 (306)
T ss_dssp ---------------------------------------------------SCBCSSSCBCHH-----HHHHEEEEECSS
T ss_pred ---------------------------------------------------CCccccccccCC-----cCcceeecCCcC
Confidence 367789999964 468999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh----CCCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
|+++.+.+ .|..++|||||||||||++|||+++ +|.++|+|||++|++||+++...+
T Consensus 208 i~s~~~~~-------------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~------ 268 (306)
T 4h6w_A 208 ILGAKPNG-------------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD------ 268 (306)
T ss_dssp EEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT------
T ss_pred cccccCCC-------------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC------
Confidence 99998865 8999999999999999999999864 699999999999999999886443
Q ss_pred CCCCCCCCcccccccCccccCCC
Q 048642 611 SFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
......||+|+||+.+|++.
T Consensus 269 ---~~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 269 ---TDDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp ---CSCGGGGTTCBCCHHHHHHH
T ss_pred ---CCCCCCcceeecCHHHHHHH
Confidence 22346799999999999973
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=439.77 Aligned_cols=271 Identities=17% Similarity=0.143 Sum_probs=216.8
Q ss_pred CCCccccCCCCC--ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccc
Q 048642 135 SSSAWGKGRFGE--DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHN 212 (782)
Q Consensus 135 ~~~~w~~~~~G~--gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~ 212 (782)
...+|+. .+|+ ||+||||||||| +||+|.++ +...++|..+ ..+.
T Consensus 32 ~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~--------------------------~~~~~~~~~~----~~~~- 78 (347)
T 2iy9_A 32 LTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS--------------------------EFAKFSFTQD----GSPF- 78 (347)
T ss_dssp CCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC--------------------------EEEEEECBTT----CCSS-
T ss_pred hHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC--------------------------cccCCcccCC----CCCC-
Confidence 5689988 8999 999999999999 99999753 3333334321 0000
Q ss_pred ccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 213 ISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
....+.|..||||||||||+|. .| +.||||+|+|+.+|+++.. + . .++++||+||+++
T Consensus 79 ----~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~~~---~-~--~~~~~ai~~a~~~ 136 (347)
T 2iy9_A 79 ----PVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIPDG---V-Q--DSWIRAIESIMSN 136 (347)
T ss_dssp ----CCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCSSB---C-T--THHHHHHHHHHTC
T ss_pred ----CCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEecCC---C-H--HHHHHHHHHHHhh
Confidence 1224567889999999999997 12 3899999999999999765 1 2 2999999999999
Q ss_pred ------CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCC-------CCcccCCCC----------cEE
Q 048642 293 ------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPE-------LGTVTNVSP----------WII 349 (782)
Q Consensus 293 ------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p----------~vi 349 (782)
|++|||||||..........+..++..+.++|++||+||||+|.. ...++...+ ++|
T Consensus 137 ~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi 216 (347)
T 2iy9_A 137 VFLAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVI 216 (347)
T ss_dssp TTSCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEE
T ss_pred hhcccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEE
Confidence 999999999987433456678888889999999999999999975 334455567 999
Q ss_pred EEccccC--CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEee
Q 048642 350 TVGASTL--DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLR 427 (782)
Q Consensus 350 tVgas~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 427 (782)
+|||++. +...
T Consensus 217 ~Vga~~~~~~g~~------------------------------------------------------------------- 229 (347)
T 2iy9_A 217 RVAALAQYRKGET------------------------------------------------------------------- 229 (347)
T ss_dssp EEEEECCCCTTSC-------------------------------------------------------------------
T ss_pred EEEEcccCCCCce-------------------------------------------------------------------
Confidence 9998654 1100
Q ss_pred CCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCc
Q 048642 428 GDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPF 507 (782)
Q Consensus 428 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 507 (782)
....+.
T Consensus 230 --------------------------------------------------------------------------~~~~~~ 235 (347)
T 2iy9_A 230 --------------------------------------------------------------------------PVLHGG 235 (347)
T ss_dssp --------------------------------------------------------------------------CCBCCC
T ss_pred --------------------------------------------------------------------------ecccCC
Confidence 000135
Q ss_pred cccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHH
Q 048642 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPS 587 (782)
Q Consensus 508 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~ 587 (782)
++.||++||+ ||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|++++.
T Consensus 236 ~~~fS~~G~~-------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~ 295 (347)
T 2iy9_A 236 GITGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATAT 295 (347)
T ss_dssp SSSCBCBCTT-------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred CCCCCCCCCC-------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 6799999994 679999999999999864 89999999999999999999999999999999
Q ss_pred HHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 588 AIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 588 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
+||++|++||+++...+ +..+|+|+||+.+|++.
T Consensus 296 ~v~~~L~~tA~~~~~~~------------~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 296 ELKRTLLESADKYPSLV------------DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp HHHHHHHHHSEECGGGT------------TTSGGGEECCHHHHHHH
T ss_pred HHHHHHHHhCccCCCCC------------CccccCCEecHHHHHHH
Confidence 99999999999875432 35899999999999984
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=472.73 Aligned_cols=361 Identities=24% Similarity=0.263 Sum_probs=251.2
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-----CCCeE
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-----DGVDV 296 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-----~g~dV 296 (782)
.|++||||||||||||.. ++..+.||||+|+|+.+|+++.... .......++++|.+|++ +|++|
T Consensus 267 ~D~~GHGThVAGIIAa~~---------N~~g~~GVAP~AkI~~vKVld~~~g-~~~t~s~l~~AI~~Aid~a~~~~gadV 336 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRLG-SMETGTALVRAMTKVMELCRDGRRIDV 336 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC---------SSSSSCCSCTTCEEEEEECBCTTTS-SCBCHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCcHHHHHHHHhcCC---------CCCCceeecCCCEEEEEEeccCCCC-cccChHHHHHHHHHHHHHHhhcCCceE
Confidence 478999999999999985 2344589999999999999876521 12355678888888877 79999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHH-hcCcEEEEecCCCCCCCCcc--cC--CCCcEEEEccccCCccceeeEEecCCeE
Q 048642 297 ISVSLGGDPADYFNDGTAIGAFHAV-KHGIVVVCSAANSGPELGTV--TN--VSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 297 In~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
||||||........+.+..++.++. ++|++||+||||+|+...++ +. .++++|+|||++...........
T Consensus 337 INmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~----- 411 (1354)
T 3lxu_X 337 INMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM----- 411 (1354)
T ss_dssp EEECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC---------
T ss_pred EEcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-----
Confidence 9999999854344567777888876 89999999999999765444 33 26999999997654311000000
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
.....+.++.|||+||+. ++++||||+||
T Consensus 412 -------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~KpDIaAP 440 (1354)
T 3lxu_X 412 -------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQGVTVCAP 440 (1354)
T ss_dssp -------------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEE
T ss_pred -------------------------------------------------ccCCCCccccccCCCCCc--cCCCcceEEec
Confidence 000125789999999997 89999999999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCC
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTRDNTANPM 607 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~ 607 (782)
|++|+++..... +.|..++|||||||||||++|||++ .+|.+++.+||++|++||+++..
T Consensus 441 G~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~----- 504 (1354)
T 3lxu_X 441 GGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY----- 504 (1354)
T ss_dssp C--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT-----
T ss_pred CceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC-----
Confidence 999999865421 2789999999999999999999986 79999999999999999998743
Q ss_pred CCCCCCCCCCCcccccccCccccCCCCccccCCcchhhhhcccCCCCcc-ceeeeccceecccCCCCCCCCCCCcEEeec
Q 048642 608 RDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQT-TIKRFFGTQYECSKSANLEDFNYPSISVPM 686 (782)
Q Consensus 608 ~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~ps~~~~~ 686 (782)
.+++.||+|+||+.+|++..+.++..+.+++.|.|..+.+.. .|.+-. + ...-|+
T Consensus 505 -------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~------~------~~~~~~----- 560 (1354)
T 3lxu_X 505 -------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQ------G------VQRNSI----- 560 (1354)
T ss_dssp -------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECS------S------CCCSCE-----
T ss_pred -------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEec------c------ccCCce-----
Confidence 235689999999999999999999999999999999885422 221111 0 000000
Q ss_pred cCceEEEEEEEEecC---C--CCeE--EEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEE
Q 048642 687 ISGSVTLSRKLKNVG---S--PSNY--AASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT 759 (782)
Q Consensus 687 ~~~~~t~~~tv~n~~---~--~~ty--~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~ 759 (782)
....+++-++.|.. . ...| .+.+.... -.|.+ |..+.+ .++.++|.|.+++.. ...+.++++|...
T Consensus 561 -~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~~-p~~l~l--~~~~r~~~v~vDp~~--L~~G~h~~~v~~~ 633 (1354)
T 3lxu_X 561 -DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQC-GAFLDL--SYGTRSIAVRVDPTG--LQPGVHSAVIRAY 633 (1354)
T ss_dssp -EEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEEE-CSCEEC--TTSCEEEEEEECGGG--CCSEEEEEEEEEE
T ss_pred -EEEEEEeeeecCcccCChhhccceEEEEEEecCC-Cceec-ccceee--cCCCceEEEEECCCC--CCCcceeEEEEEE
Confidence 01223333342211 1 2222 23333221 23443 888877 467789999999876 4567789999986
Q ss_pred c-----CCcEEEEEEEEEEcc
Q 048642 760 D-----GKHYVRSPIVVNQAQ 775 (782)
Q Consensus 760 ~-----~~~~v~~P~~~~~~~ 775 (782)
| -++..|||+.+..+-
T Consensus 634 D~~~~~~gp~f~ipvTv~~P~ 654 (1354)
T 3lxu_X 634 DTDCVQKGSLFEIPVTVVQPH 654 (1354)
T ss_dssp ESSCTTSCCSEEEEEEEEECB
T ss_pred EcCCcccCceEEeeEEEEeee
Confidence 5 268999999998765
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=428.32 Aligned_cols=298 Identities=23% Similarity=0.332 Sum_probs=220.3
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCC-Ccccccccc---cccccchhhHhhhccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNRKL---IGARYFNRAYAAYVKQ 210 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ki---~g~~~~~~~~~~~~~~ 210 (782)
+..+|+.+++|+||+||||||||+ +||+|.++- +.+....... .....+.+. .....+.+.+.....+
T Consensus 21 ~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (340)
T 3lpc_A 21 ADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-------LPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRP 92 (340)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-------CCCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTT
T ss_pred HHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-------ccCccccCCccccccCCCccCCccccccccccccccCCC
Confidence 678999999999999999999998 999997541 1111100000 000000000 0000000000000000
Q ss_pred ccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh
Q 048642 211 HNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI 290 (782)
Q Consensus 211 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~ 290 (782)
+ +.....|..||||||||||+|...+ ...+.||||+|+|+.+|++... ++..++++++|+|++
T Consensus 93 -~----~~~~~~d~~gHGT~vAgiia~~~~~--------~~g~~GvAp~a~l~~~~v~~~~----~~~~~~~~~ai~~a~ 155 (340)
T 3lpc_A 93 -D----PRKERSDSSWHGSHVAGTIAAVTNN--------RIGVAGVAYGAKVVPVRALGRC----GGYDSDISDGLYWAA 155 (340)
T ss_dssp -C----GGGSCBCCCCHHHHHHHHHHCCCSS--------SSSCCCTTTTSEEEEEECCBTT----BCCHHHHHHHHHHHH
T ss_pred -C----cccCCCCCCCCHHHHHHHHHccCCC--------CCcceeecCCCEEEEEEEecCC----CCcHHHHHHHHHHHh
Confidence 0 1234578899999999999998532 2235899999999999999876 378889999999999
Q ss_pred h----------CCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC-cccCCCCcEEEEccccCCcc
Q 048642 291 H----------DGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG-TVTNVSPWIITVGASTLDRE 359 (782)
Q Consensus 291 ~----------~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgas~~~~~ 359 (782)
+ .+++|||||||... .....+..++.++.++|++||+||||+|.... .++...+++|+|||++.
T Consensus 156 ~~~~~~~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--- 230 (340)
T 3lpc_A 156 GGRIAGIPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS--- 230 (340)
T ss_dssp TCCCTTSCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT---
T ss_pred cccccccccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC---
Confidence 8 89999999999862 23455777788899999999999999996643 34556789999998542
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
.+.++.||++||.
T Consensus 231 -----------------------------------------------------------------~~~~~~~S~~g~~-- 243 (340)
T 3lpc_A 231 -----------------------------------------------------------------RGIRASFSNYGVD-- 243 (340)
T ss_dssp -----------------------------------------------------------------TSSBCTTCCBSTT--
T ss_pred -----------------------------------------------------------------CCCcCCCCCCCCC--
Confidence 2467899999984
Q ss_pred CCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHh
Q 048642 520 TPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA-H---PDWSPSAIRSAIMT 595 (782)
Q Consensus 520 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---p~~sp~~ik~~L~~ 595 (782)
|||+|||++|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++|++
T Consensus 244 ------~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~ 311 (340)
T 3lpc_A 244 ------VDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVS 311 (340)
T ss_dssp ------CCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ------ceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHh
Confidence 59999999999999875321 12236999999999999999999999998 5 99999999999999
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 596 TARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 596 TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
||+++.. .++..||+|+||+.+||+.
T Consensus 312 tA~~~~~------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 312 TTSPFNG------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp TCBCCSS------------CCSSCCCSSBCCHHHHHHH
T ss_pred cCCcCCC------------CCCCCcccceecHHHHHHH
Confidence 9998742 2356899999999999974
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=410.00 Aligned_cols=237 Identities=27% Similarity=0.382 Sum_probs=201.9
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+.+|+||+|||||||||++||+|.++ +...++|.+
T Consensus 18 ~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~------------ 59 (284)
T 1sh7_A 18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR--------------------------SVSGYDFVD------------ 59 (284)
T ss_dssp CCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC--------------------------EEEEEETTT------------
T ss_pred chhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC--------------------------ccccccccC------------
Confidence 467899999999999999999999999999753 222333432
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC--
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD-- 292 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~-- 292 (782)
....+.|..||||||||||+|.. .||||+|+|+.+|+++.. |.+..+++++||+|++++
T Consensus 60 --~~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~---g~~~~~~~~~ai~~a~~~~~ 120 (284)
T 1sh7_A 60 --NDADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCS---GSGTTSGVISGVDWVAQNAS 120 (284)
T ss_dssp --TBSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTT---SCBCHHHHHHHHHHHHHHCC
T ss_pred --CCCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCC---CCcCHHHHHHHHHHHHhCCC
Confidence 12346788999999999999873 699999999999999876 467889999999999974
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC-cccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG-TVTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+++|||||||.. ....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 121 ~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 181 (284)
T 1sh7_A 121 GPSVANMSLGGG----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS--------------- 181 (284)
T ss_dssp SSEEEEECCCBS----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT---------------
T ss_pred CCcEEEeCCCCC----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC---------------
Confidence 799999999987 3456778888899999999999999996543 34556799999998542
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
.+.++.||++||.. ||+||
T Consensus 182 -----------------------------------------------------~~~~~~~S~~G~~~--------di~Ap 200 (284)
T 1sh7_A 182 -----------------------------------------------------SDSRSSFSNWGSCV--------DLFAP 200 (284)
T ss_dssp -----------------------------------------------------TSBBCTTCCBSTTC--------CEEEE
T ss_pred -----------------------------------------------------CCCcCcccCCCCcc--------EEEec
Confidence 14678999999976 99999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~ 601 (782)
|++|+++++.+ .|..++|||||||||||++|||+|++|+++++|||++|++||++..
T Consensus 201 G~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 201 GSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred cCCeEEecCCC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 99999998764 8999999999999999999999999999999999999999998764
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-49 Score=440.12 Aligned_cols=295 Identities=26% Similarity=0.346 Sum_probs=224.5
Q ss_pred CCCccc-cCCCCCceEEEEecCCcCc------CCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhh
Q 048642 135 SSSAWG-KGRFGEDIIIANLDTGVWP------ESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAY 207 (782)
Q Consensus 135 ~~~~w~-~~~~G~gV~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~ 207 (782)
+..+|. .+.+|+||+|||||||||+ .||+|.++ +...++|.+
T Consensus 10 ~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~--------------------------i~~~~~~~~----- 58 (434)
T 1wmd_A 10 ADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK--------------------------ITALYALGR----- 58 (434)
T ss_dssp HHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC--------------------------EEEEEETTT-----
T ss_pred chhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCCC--------------------------EeeeccccC-----
Confidence 347897 7999999999999999999 79999753 333333321
Q ss_pred cccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHH
Q 048642 208 VKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFD 287 (782)
Q Consensus 208 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~ 287 (782)
...+.|..||||||||||+|+. ..+.||||+|+|+.+|+++..+.. .+..+++.++|+
T Consensus 59 ----------~~~~~d~~gHGT~VAgiiag~g-----------~~~~GvAp~a~l~~~~v~~~~g~~-~~~~~~~~~ai~ 116 (434)
T 1wmd_A 59 ----------TNNANDTNGHGTHVAGSVLGNG-----------STNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFS 116 (434)
T ss_dssp ----------TTCCCCSSSHHHHHHHHHHCCS-----------SSSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHH
T ss_pred ----------CCCCCCCCCcHHHHHHHHHcCC-----------CCceeeCCCCEEEEEEeecCCCcc-ccccHHHHHHHH
Confidence 2256688999999999999863 125899999999999999765211 124678999999
Q ss_pred HhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHH-HhcCcEEEEecCCCCCCCCc--ccCCCCcEEEEccccCCccceeeE
Q 048642 288 MAIHDGVDVISVSLGGDPADYFNDGTAIGAFHA-VKHGIVVVCSAANSGPELGT--VTNVSPWIITVGASTLDREFQNFV 364 (782)
Q Consensus 288 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgas~~~~~~~~~~ 364 (782)
+++++|++|||||||...... .+....++.++ .++|++||+||||+|....+ .+..++++|+|||++..+...
T Consensus 117 ~a~~~g~~Vin~S~G~~~~~~-~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~--- 192 (434)
T 1wmd_A 117 QAYSAGARIHTNSWGAAVNGA-YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF--- 192 (434)
T ss_dssp HHHHTTCSEEEECCCBCCTTC-CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG---
T ss_pred HHHhcCCeEEEecCCCCcCCc-CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc---
Confidence 999999999999999874212 23455566555 58999999999999976443 344679999999976432100
Q ss_pred EecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCc
Q 048642 365 ELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGA 444 (782)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 444 (782)
|.
T Consensus 193 ------------------------------------------------------------------------------~~ 194 (434)
T 1wmd_A 193 ------------------------------------------------------------------------------GS 194 (434)
T ss_dssp ------------------------------------------------------------------------------CG
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 00
Q ss_pred eEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCc
Q 048642 445 VGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEIL 524 (782)
Q Consensus 445 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 524 (782)
.....+.++.||++||+. ++++
T Consensus 195 --------------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~ 216 (434)
T 1wmd_A 195 --------------------------------------------------------YADNINHVAQFSSRGPTK--DGRI 216 (434)
T ss_dssp --------------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCC
T ss_pred --------------------------------------------------------ccCCCCccccccCCCCCC--CCCC
Confidence 001135889999999997 8999
Q ss_pred CCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccc
Q 048642 525 KPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDW-----SPSAIRSAIMTTART 599 (782)
Q Consensus 525 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~-----sp~~ik~~L~~TA~~ 599 (782)
||||+|||++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||++
T Consensus 217 kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~ 295 (434)
T 1wmd_A 217 KPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAAD 295 (434)
T ss_dssp CCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBC
T ss_pred CceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcc
Confidence 999999999999998653210000 00013489999999999999999999999999875 899999999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccccCccccCCCC
Q 048642 600 RDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPG 634 (782)
Q Consensus 600 ~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~ 634 (782)
+.. ..+++.||||+||+.+|++..
T Consensus 296 ~~~-----------~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 296 IGL-----------GYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp CSS-----------CSSCTTTTTCBCCHHHHHTCE
T ss_pred cCC-----------CCCCccCCcCeEeHHHhcccc
Confidence 531 235789999999999999754
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=405.20 Aligned_cols=238 Identities=29% Similarity=0.390 Sum_probs=200.9
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+.+|+||+|||||||||++||+|.++ +...++|.+
T Consensus 20 ~~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~--------------------------~~~~~d~~~------------ 61 (278)
T 2b6n_A 20 LDNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR--------------------------ASSGYDFID------------ 61 (278)
T ss_dssp CCSEEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETTT------------
T ss_pred cchhcccCCCCCCCEEEEEeCCCCCCChhHhcc--------------------------cccCeecCC------------
Confidence 457899999999999999999999999999753 222333332
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh--C
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH--D 292 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~--~ 292 (782)
+..++.|..||||||||||+|.. .||||+|+|+.+|++++. +.+..+++++||+|+++ .
T Consensus 62 --~~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~---g~~~~~~~~~ai~~a~~~~~ 122 (278)
T 2b6n_A 62 --NDYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCS---GSGSNSGVIAGINWVKNNAS 122 (278)
T ss_dssp --TBSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHHCC
T ss_pred --CCCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCC---CCccHHHHHHHHHHHHhCCC
Confidence 12345788999999999999873 699999999999999876 46788999999999997 5
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc-ccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT-VTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 123 g~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 183 (278)
T 2b6n_A 123 GPAVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS--------------- 183 (278)
T ss_dssp SSEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred CCeEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC---------------
Confidence 9999999999873 4567778888999999999999999975433 3556789999998542
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
.+.++.||++||.. ||+||
T Consensus 184 -----------------------------------------------------~~~~~~~S~~G~~~--------di~Ap 202 (278)
T 2b6n_A 184 -----------------------------------------------------NDSRSSFSNYGTCL--------DIYAP 202 (278)
T ss_dssp -----------------------------------------------------TSBBCTTCCBSTTC--------CEEEE
T ss_pred -----------------------------------------------------CCCcCCcCCCCCCC--------eEEeC
Confidence 14678999999865 99999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 600 (782)
|++|+++++... ..|..++|||||||||||++|||+|++|++++.+||++|++||++.
T Consensus 203 G~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~ 260 (278)
T 2b6n_A 203 GSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATAD 260 (278)
T ss_dssp CSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEES
T ss_pred CCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC
Confidence 999999987531 2899999999999999999999999999999999999999999875
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=404.80 Aligned_cols=240 Identities=27% Similarity=0.352 Sum_probs=203.9
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
+...+|..+.+|+||+|||||||||++||+|.++ +...++|.
T Consensus 19 ~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~------------ 60 (276)
T 4dzt_A 19 PLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR--------------------------ARVGYDAL------------ 60 (276)
T ss_dssp SCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC--------------------------EEEEEETT------------
T ss_pred CcccceecCCCCCCcEEEEEccCCCCCChhHccC--------------------------eeccccCC------------
Confidence 3567899999999999999999999999999753 22222222
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC-
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD- 292 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~- 292 (782)
.....|..||||||||||+|.. .||||+|+|+.+|+++.. +.+..+.++++|+|+++.
T Consensus 61 ----~~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~---~~~~~~~~~~ai~~~~~~~ 119 (276)
T 4dzt_A 61 ----GGNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCN---GSGSTSGVIAGVDWVTRNH 119 (276)
T ss_dssp ----SSCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHHC
T ss_pred ----CCCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCC---CCcCHHHHHHHHHHHHhcC
Confidence 1245688999999999999873 699999999999999877 467899999999999987
Q ss_pred -CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc-cCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 293 -GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV-TNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 293 -g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
+++|||||||... ...+..++.++.++|+++|+||||+|...... +...+++|+|||++.
T Consensus 120 ~~~~vin~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~-------------- 181 (276)
T 4dzt_A 120 RRPAVANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS-------------- 181 (276)
T ss_dssp CSSEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT--------------
T ss_pred CCCeEEEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC--------------
Confidence 9999999999862 46678888899999999999999999764443 556789999998542
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.++.||++||.. ||+|
T Consensus 182 ------------------------------------------------------~~~~~~~S~~g~~~--------dv~A 199 (276)
T 4dzt_A 182 ------------------------------------------------------SDARASFSNYGSCV--------DLFA 199 (276)
T ss_dssp ------------------------------------------------------TSBBCTTCCBSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 24778999999986 9999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~ 603 (782)
||++|+++++... ..|..++|||||||+|||++|||+|++|++++++||++|++||++....
T Consensus 200 pG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 200 PGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp ECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred CCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 9999999987642 2789999999999999999999999999999999999999999986433
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=405.17 Aligned_cols=240 Identities=28% Similarity=0.374 Sum_probs=201.5
Q ss_pred ccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccC
Q 048642 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNF 217 (782)
Q Consensus 138 ~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (782)
.|.. .+|+||+|+|||||||++||+|.++ +...++|.
T Consensus 24 ~~~~-~~G~gv~VaViDsGvd~~H~~l~~~--------------------------~~~~~~~~---------------- 60 (279)
T 2pwa_A 24 YYDE-SAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKTYY---------------- 60 (279)
T ss_dssp ECCT-TTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEESS----------------
T ss_pred cccC-CCCCCCEEEEEeCCCCCCChhHhCc--------------------------cccccCCC----------------
Confidence 4543 7899999999999999999999753 22223332
Q ss_pred CCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC---
Q 048642 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV--- 294 (782)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~--- 294 (782)
..+.|..||||||||||+|.. .||||+|+|+.+|+++.. |.+..+++++||+|++++++
T Consensus 61 -~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~---g~~~~~~~~~ai~~a~~~~~~~~ 122 (279)
T 2pwa_A 61 -YSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDN---GSGQYSTIIAGMDFVASDKNNRN 122 (279)
T ss_dssp -SCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHHGGGSC
T ss_pred -CCCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEcCC---CCcCHHHHHHHHHHHHhcCcccc
Confidence 135578999999999999873 799999999999999876 45788999999999999887
Q ss_pred ----eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC-cccCCCCcEEEEccccCCccceeeEEecCC
Q 048642 295 ----DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG-TVTNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 295 ----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
+|||||||.. ....+..++.++.++|++||+||||+|.... .++...+++|+|||++.+
T Consensus 123 ~~~~~Vin~S~G~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 186 (279)
T 2pwa_A 123 CPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY------------ 186 (279)
T ss_dssp CTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------
T ss_pred CCCccEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC------------
Confidence 9999999976 3466788888899999999999999997543 345567999999985431
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
+.++.||++||.+ ||+
T Consensus 187 --------------------------------------------------------~~~~~~S~~G~~~--------di~ 202 (279)
T 2pwa_A 187 --------------------------------------------------------DRRSSFSNYGSVL--------DIF 202 (279)
T ss_dssp --------------------------------------------------------SBBCTTCCBSTTC--------CEE
T ss_pred --------------------------------------------------------CCcCCcCCCCCcc--------eEE
Confidence 4678999999975 999
Q ss_pred eCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCC
Q 048642 530 APGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRD 609 (782)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~ 609 (782)
|||++|+++++.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++...
T Consensus 203 APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~------- 261 (279)
T 2pwa_A 203 GPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL------- 261 (279)
T ss_dssp EECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-------
T ss_pred EecCCeEEeecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-------
Confidence 9999999999864 8899999999999999999999999 999999999999999987531
Q ss_pred CCCCCCCCCcccccccCc
Q 048642 610 GSFKKATPFSYGSGHIRP 627 (782)
Q Consensus 610 ~~~~~~~~~~~G~G~vd~ 627 (782)
..+|+|..|+
T Consensus 262 --------~~~~~g~~n~ 271 (279)
T 2pwa_A 262 --------SNIPFGTVNL 271 (279)
T ss_dssp --------BSCCTTSCCE
T ss_pred --------CCCCCCCccE
Confidence 2467777776
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=426.39 Aligned_cols=295 Identities=16% Similarity=0.177 Sum_probs=218.6
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
.+..+|..+.+|+||+|||||||||++||+|.++- .....++|.++ ..++
T Consensus 26 ~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~------------------------~~~~~~d~~~~------~~~p 75 (471)
T 1p8j_A 26 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY------------------------DPGASFDVNDQ------DPDP 75 (471)
T ss_dssp CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB------------------------CGGGCEETTTT------BSCC
T ss_pred ChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc------------------------CccCcccccCC------CCCC
Confidence 36789999999999999999999999999998530 00012223221 0000
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-C
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-D 292 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~ 292 (782)
. +...+.|..||||||||||+|...+ +..+.||||+|+|+.+|+++ +..+++++||+++++ +
T Consensus 76 ~--~~~~~~d~~gHGT~vAGiiaa~~~n--------~~g~~GvAp~a~i~~~rv~~-------g~~~~~~~ai~~a~~~~ 138 (471)
T 1p8j_A 76 Q--PRYTQMNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLD-------GEVTDAVEARSLGLNPN 138 (471)
T ss_dssp C--CCCCTTCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSS-------SCCCHHHHHHHHTSCTT
T ss_pred C--CccCCCCCCCcHHHHHHHHHeeccC--------CCCCEEECCCCeEEEEEccC-------CchhHHHHHHHhhhccC
Confidence 0 1124568899999999999997532 22358999999999999985 346789999999999 9
Q ss_pred CCeEEEEccCCCCCC----CCCCHHHHHHHHHHh-----cCcEEEEecCCCCCCCCc----ccCCCCcEEEEccccCCcc
Q 048642 293 GVDVISVSLGGDPAD----YFNDGTAIGAFHAVK-----HGIVVVCSAANSGPELGT----VTNVSPWIITVGASTLDRE 359 (782)
Q Consensus 293 g~dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgas~~~~~ 359 (782)
+++|||||||..... .....+..++.++.+ +|++||+||||+|..... ....++++|+|||++.+
T Consensus 139 ~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~-- 216 (471)
T 1p8j_A 139 HIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF-- 216 (471)
T ss_dssp TCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT--
T ss_pred CCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC--
Confidence 999999999986321 122334455555543 699999999999865322 12245899999985431
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
+.++.||++||..
T Consensus 217 ------------------------------------------------------------------g~~a~~S~~g~~~- 229 (471)
T 1p8j_A 217 ------------------------------------------------------------------GNVPWYSEACSST- 229 (471)
T ss_dssp ------------------------------------------------------------------SCCCTTCCBCTTC-
T ss_pred ------------------------------------------------------------------CCcccccCCCCcc-
Confidence 4678999999987
Q ss_pred CCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 048642 520 TPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599 (782)
Q Consensus 520 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 599 (782)
....+|...+||.+|+++.+.+ ..|..++|||||||||||++|||+|++|+|++++||++|++||++
T Consensus 230 -~~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~ 296 (471)
T 1p8j_A 230 -LATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKP 296 (471)
T ss_dssp -CEEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBC
T ss_pred -eEEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCcc
Confidence 4445566666678999998642 268999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccccCccccCCCCccc
Q 048642 600 RDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVY 637 (782)
Q Consensus 600 ~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~ 637 (782)
++.....+.........+..||+|+||+.+|++....+
T Consensus 297 ~~~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a~~~ 334 (471)
T 1p8j_A 297 AHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNW 334 (471)
T ss_dssp TTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHHHTC
T ss_pred CCCCCCCceecCCCcccCCCCCCEEEcHhHHHHHhhcc
Confidence 86543222221112234678999999999999865443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=426.33 Aligned_cols=286 Identities=19% Similarity=0.209 Sum_probs=216.6
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
.+..+|..+.+|+||+|||||||||++||+|.++- + ..+.++|.++ ..
T Consensus 42 ~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~-----------------~~~~~d~~~~------~~-- 89 (503)
T 2id4_A 42 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C-----------------AEGSWDFNDN------TN-- 89 (503)
T ss_dssp CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C-----------------GGGCEETTTT------BS--
T ss_pred ChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c-----------------ccCcccCCCC------CC--
Confidence 46789999999999999999999999999998640 0 0112333321 00
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCC
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDG 293 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g 293 (782)
+.....|..||||||||||+|...++ ..+.||||+|+|+.+|+++. .+...++++||+|+++++
T Consensus 90 ---~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~-----~~~~~~~~~ai~~a~~~~ 153 (503)
T 2id4_A 90 ---LPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG-----DITTEDEAASLIYGLDVN 153 (503)
T ss_dssp ---CCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS-----CCCHHHHHHHTTTTTTTC
T ss_pred ---CCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC-----CCChHHHHHHHHhHhhcC
Confidence 11223578899999999999975322 23489999999999999973 367889999999999998
Q ss_pred CeEEEEccCCCCCC----CCCCHHHHHHHHHH-----hcCcEEEEecCCCCCCCC--cccC--CCCcEEEEccccCCccc
Q 048642 294 VDVISVSLGGDPAD----YFNDGTAIGAFHAV-----KHGIVVVCSAANSGPELG--TVTN--VSPWIITVGASTLDREF 360 (782)
Q Consensus 294 ~dVIn~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~~--~~p~vitVgas~~~~~~ 360 (782)
+|||||||..... .....+..++.++. .+|++||+||||+|.... .++. .++++|+|||++.+
T Consensus 154 -~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~--- 229 (503)
T 2id4_A 154 -DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK--- 229 (503)
T ss_dssp -SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT---
T ss_pred -CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC---
Confidence 9999999986311 12234566666665 479999999999996432 2222 46789999985432
Q ss_pred eeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHH
Q 048642 361 QNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAA 440 (782)
Q Consensus 361 ~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 440 (782)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCC
Q 048642 441 VAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKIT 520 (782)
Q Consensus 441 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 520 (782)
+.++.||++||..
T Consensus 230 -----------------------------------------------------------------~~~a~~S~~g~~~-- 242 (503)
T 2id4_A 230 -----------------------------------------------------------------DLHPPYSEGCSAV-- 242 (503)
T ss_dssp -----------------------------------------------------------------SCCCTTCCCCTTE--
T ss_pred -----------------------------------------------------------------CCcCCcCCCCCcc--
Confidence 4678999999987
Q ss_pred CCCcCCeEEe----CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 521 PEILKPDITA----PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 521 ~~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
|++| ||..|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++|
T Consensus 243 ------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~t 304 (503)
T 2id4_A 243 ------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILS 304 (503)
T ss_dssp ------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 8887 899999995431 279999999999999999999999999999999999999999
Q ss_pred cccccCC-CCCCCCCCCCCCCCCcccccccCccccCCCCcc
Q 048642 597 ARTRDNT-ANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLV 636 (782)
Q Consensus 597 A~~~~~~-g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv 636 (782)
|+++... ...+.........+..||+|+||+.+|++....
T Consensus 305 A~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 305 AVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp CBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred cccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHhc
Confidence 9987643 111111111223456899999999999985443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=417.22 Aligned_cols=291 Identities=19% Similarity=0.200 Sum_probs=204.8
Q ss_pred cccccCCccc-CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhh
Q 048642 125 MLLENNGVIH-SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRA 203 (782)
Q Consensus 125 ~g~~~~~~~~-~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~ 203 (782)
|+|..+.+.. ....|..+.+|+||+|+|||||||++||+|.++- ......+...
T Consensus 4 WgL~rI~~~~~~~~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~-------------------------~~~~~~~v~~ 58 (546)
T 2qtw_B 4 WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV-------------------------MVTDFENVPE 58 (546)
T ss_dssp HHHHHTSCSSCC--------CCTTSEEEEEESCCCTTSTTTTTTE-------------------------EEEEEECCCC
T ss_pred CChhhcCCCcccchhcccCCCCCCcEEEEECCCCCCCChHHcccc-------------------------cccCcccccC
Confidence 4555444322 2347888999999999999999999999998640 0000000000
Q ss_pred HhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHH
Q 048642 204 YAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADIL 283 (782)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~ 283 (782)
.++ .+ ....+.|..||||||||||+|+. .||||+|+|+.+|+++.. |.+..++++
T Consensus 59 ---~dg-~~----f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~---G~g~~s~ii 113 (546)
T 2qtw_B 59 ---EDG-TR----FHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQ---GKGTVSGTL 113 (546)
T ss_dssp ---CC------------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SEEEHHHHH
T ss_pred ---CCC-cc----ccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCC---CCcCHHHHH
Confidence 000 00 01245688999999999999873 699999999999999876 467888999
Q ss_pred HHHHHhhhC------CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc-ccCCCCcEEEEccccC
Q 048642 284 KGFDMAIHD------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT-VTNVSPWIITVGASTL 356 (782)
Q Consensus 284 ~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgas~~ 356 (782)
+||+|+++. +++|||||||.. ....+..++.++.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 114 ~ai~~a~~~~~~~~~g~~VINmSlGg~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~ 189 (546)
T 2qtw_B 114 IGLEFIRKSQLVQPVGPLVVLLPLAGG----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNA 189 (546)
T ss_dssp HHHHHHHHHHHHSCCSCEEEEECEEEE----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECT
T ss_pred HHHHHHHHhhhhccCCCeEEEecCCCC----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecC
Confidence 999999974 999999999976 34567888889999999999999999975432 3556799999998654
Q ss_pred CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhh
Q 048642 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 436 (782)
+...
T Consensus 190 ~g~~---------------------------------------------------------------------------- 193 (546)
T 2qtw_B 190 QDQP---------------------------------------------------------------------------- 193 (546)
T ss_dssp TSCB----------------------------------------------------------------------------
T ss_pred CCCc----------------------------------------------------------------------------
Confidence 3200
Q ss_pred HHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCC
Q 048642 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGP 516 (782)
Q Consensus 437 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 516 (782)
...-..||++|+
T Consensus 194 --------------------------------------------------------------------a~~s~~fSn~G~ 205 (546)
T 2qtw_B 194 --------------------------------------------------------------------VTLGTLGTNFGR 205 (546)
T ss_dssp --------------------------------------------------------------------CEETTEECCBST
T ss_pred --------------------------------------------------------------------ccccCCcCCCCC
Confidence 000123899998
Q ss_pred CCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 517 NKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 517 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
. |||+|||++|+++++... ..|..++|||||||||||++|||+|++|+++|+|||++|++|
T Consensus 206 ~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~t 266 (546)
T 2qtw_B 206 C--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHF 266 (546)
T ss_dssp T--------CCEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred c--------ceEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 5 499999999999987642 279999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCC-----CCC----CCCCCCCcccccc--cCccccCC
Q 048642 597 ARTRDNTANPMR-----DGS----FKKATPFSYGSGH--IRPNRAMD 632 (782)
Q Consensus 597 A~~~~~~g~~~~-----~~~----~~~~~~~~~G~G~--vd~~~A~~ 632 (782)
|.+.......+. ... ..+.....+|+|+ .++..+..
T Consensus 267 At~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 267 SAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp SEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred ccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 976432111000 000 1111355678888 77766664
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=392.91 Aligned_cols=230 Identities=30% Similarity=0.404 Sum_probs=195.8
Q ss_pred CccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccccc
Q 048642 137 SAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVN 216 (782)
Q Consensus 137 ~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (782)
.+|+.. +|+||+|||||||||++||+|.++ +...+.|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~--------------------------~~~~~~~~~-------------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR--------------------------AKQIKSYAS-------------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEECSS--------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc--------------------------cccccCCCC--------------
Confidence 466666 999999999999999999999753 222233321
Q ss_pred CCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCC---
Q 048642 217 FNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDG--- 293 (782)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g--- 293 (782)
...|..||||||||||+|+. .||||+|+|+.+|+++.. +.+..+++++||+|+++++
T Consensus 63 ---~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~---~~~~~~~~~~ai~~~~~~~~~~ 122 (279)
T 3f7m_A 63 ---TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDS---GSGSLSNIIAGMDFVASDRQSR 122 (279)
T ss_dssp ---SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHHGGGS
T ss_pred ---CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCC---CCcCHHHHHHHHHHHHhccccc
Confidence 22388999999999999873 699999999999999876 4678999999999999876
Q ss_pred ----CeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc-cCCCCcEEEEccccCCccceeeEEecC
Q 048642 294 ----VDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV-TNVSPWIITVGASTLDREFQNFVELRN 368 (782)
Q Consensus 294 ----~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~-~~~~p~vitVgas~~~~~~~~~~~~~~ 368 (782)
++|||||||.. ....+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 123 ~~~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------ 186 (279)
T 3f7m_A 123 NCPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------ 186 (279)
T ss_dssp CCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------
T ss_pred cCCCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC------------
Confidence 99999999976 456788888899999999999999999764433 556789999998542
Q ss_pred CeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEE
Q 048642 369 GQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448 (782)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 448 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeE
Q 048642 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDI 528 (782)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (782)
.+.++.||++||.. ||
T Consensus 187 --------------------------------------------------------~~~~~~~S~~g~~~--------di 202 (279)
T 3f7m_A 187 --------------------------------------------------------NDVRSTFSNYGRVV--------DI 202 (279)
T ss_dssp --------------------------------------------------------TSBBCTTCCBSTTC--------CE
T ss_pred --------------------------------------------------------CCCCCCCCCCCCCC--------eE
Confidence 24778999999976 99
Q ss_pred EeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccc
Q 048642 529 TAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601 (782)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~ 601 (782)
+|||++|+++++.+ .|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 203 ~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 203 FAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEECSSEEEECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EECCCCeEeecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 99999999999864 7899999999999999999999999999 99999999999998753
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-45 Score=425.03 Aligned_cols=301 Identities=20% Similarity=0.212 Sum_probs=206.0
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
++..+|..+++|+||+|||||||||++||||.++ ...+.++|..+..
T Consensus 58 nv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------------------------~~~~~~~~~~~~~-------- 104 (600)
T 3hjr_A 58 NLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------------------------VRPGSKNVVTGSD-------- 104 (600)
T ss_dssp CCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------------------------BCSCCBCTTTSSS--------
T ss_pred CHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------------------------cccCcceeecCCC--------
Confidence 4678999999999999999999999999999854 0112233322210
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHH-HHhhhC
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGF-DMAIHD 292 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai-~~a~~~ 292 (782)
+.....|.+||||||||||||.. ++..+.||||+|+|+.+|++++. +.+..++++.|+ +++..+
T Consensus 105 ---dp~p~~~~~gHGThVAGiIAa~~---------n~~g~~GVAp~A~l~~~rvl~~~---~~~~~~~~~~a~~~~~~~~ 169 (600)
T 3hjr_A 105 ---DPTPTDPDTAHGTSVSGIIAAVD---------NAIGTKGIAPRAQLQGFNLLDDN---SQQLQKDWLYALGDSNASR 169 (600)
T ss_dssp ---CCCCCSTTCCHHHHHHHHHHCCS---------SSSSCCCSSTTCEEEEECTTSTT---CCCCHHHHHHHTTSSHHHH
T ss_pred ---CCCCCCCCCChHHHHHHHHhEeC---------CCCCcEEeCCCCEEEEEEeecCC---CCccHHHHHHHhhhhhhhc
Confidence 12234467899999999999863 12234899999999999999876 456777777776 567788
Q ss_pred CCeEEEEccCCCC-CCCCCCHH-----HHHHHH--HHhcCcEEEEecCCCCCCCCc----------------------cc
Q 048642 293 GVDVISVSLGGDP-ADYFNDGT-----AIGAFH--AVKHGIVVVCSAANSGPELGT----------------------VT 342 (782)
Q Consensus 293 g~dVIn~SlG~~~-~~~~~~~~-----~~a~~~--a~~~Gi~vV~AAGN~g~~~~~----------------------~~ 342 (782)
+++|||+|||... .....+.. ..++.. ...+|+++|+||||.+..... ..
T Consensus 170 ~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~ 249 (600)
T 3hjr_A 170 DNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPS 249 (600)
T ss_dssp TCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGG
T ss_pred CCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCc
Confidence 9999999999762 11222221 112221 226899999999997632100 00
Q ss_pred CCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceE
Q 048642 343 NVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKI 422 (782)
Q Consensus 343 ~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki 422 (782)
...+++|+|||++
T Consensus 250 ~~~~~~IsVgA~~------------------------------------------------------------------- 262 (600)
T 3hjr_A 250 NSNFWNLVVSALN------------------------------------------------------------------- 262 (600)
T ss_dssp GGSSSEEEEEEEC-------------------------------------------------------------------
T ss_pred cccCcceEEeeec-------------------------------------------------------------------
Confidence 0122333333321
Q ss_pred EEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccC
Q 048642 423 LVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNA 502 (782)
Q Consensus 423 vl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 502 (782)
T Consensus 263 -------------------------------------------------------------------------------- 262 (600)
T 3hjr_A 263 -------------------------------------------------------------------------------- 262 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCCCcCCeEEeCCceE--------EEeecCCCCCC-------------CCCCCCCCcceeeec
Q 048642 503 KPSPFMASFSSAGPNKITPEILKPDITAPGVNI--------IAAFTGAIGAT-------------ELPYDTRRIPYNIMS 561 (782)
Q Consensus 503 ~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~~~s 561 (782)
..+.++.||++|+.. +++|||.++ .+..++..... ....+.....|..++
T Consensus 263 -~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 333 (600)
T 3hjr_A 263 -ADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMN 333 (600)
T ss_dssp -TTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEEC
T ss_pred -CCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccc
Confidence 235789999999987 999999762 22222211000 001122345688999
Q ss_pred cccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCC--------------------CCCCCCCCCCccc
Q 048642 562 GTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMR--------------------DGSFKKATPFSYG 621 (782)
Q Consensus 562 GTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~--------------------~~~~~~~~~~~~G 621 (782)
|||||||||||++|||+|++|+|+++|||++|++||++++....|+. ...........||
T Consensus 334 GTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yG 413 (600)
T 3hjr_A 334 GTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYG 413 (600)
T ss_dssp SHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTB
T ss_pred cccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccC
Confidence 99999999999999999999999999999999999999987665522 1111222356799
Q ss_pred ccccCccccCCCCcccc
Q 048642 622 SGHIRPNRAMDPGLVYD 638 (782)
Q Consensus 622 ~G~vd~~~A~~~~lv~~ 638 (782)
+|+||+.+|++....+.
T Consensus 414 fG~vDA~~aV~~A~~w~ 430 (600)
T 3hjr_A 414 FGLIDVNKALELAANHQ 430 (600)
T ss_dssp TCBCCHHHHHHHHTTCC
T ss_pred CceecHHHHHHHhhcCc
Confidence 99999999998554443
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-25 Score=254.34 Aligned_cols=97 Identities=25% Similarity=0.394 Sum_probs=76.5
Q ss_pred cceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh---CCCeEEEEccCCCCCCC---CCCHHHHHHHHHHhcCc
Q 048642 252 TAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH---DGVDVISVSLGGDPADY---FNDGTAIGAFHAVKHGI 325 (782)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi 325 (782)
.+.||||+|+|+.|++. ...+.++++|+||++ ++++|||||||.....+ ....+..++.+|..+||
T Consensus 273 ~~~gvAp~a~i~~~~~~--------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi 344 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP--------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGV 344 (552)
T ss_dssp HHHHHCTTSEEEEEECC--------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCeEEEEEcC--------CCCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCe
Confidence 46899999999999973 245689999999998 79999999999873211 12346666777889999
Q ss_pred EEEEecCCCCCCC--------CcccCCCCcEEEEccccC
Q 048642 326 VVVCSAANSGPEL--------GTVTNVSPWIITVGASTL 356 (782)
Q Consensus 326 ~vV~AAGN~g~~~--------~~~~~~~p~vitVgas~~ 356 (782)
+||+||||+|... -.++..+|+|++||+++.
T Consensus 345 ~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 345 TVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999999643 234456799999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-22 Score=215.20 Aligned_cols=100 Identities=21% Similarity=0.174 Sum_probs=78.6
Q ss_pred eecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-CCCeEEEEccCCCCC----CCCCCHHHHHHHHHHhcCcEEE
Q 048642 254 KGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-DGVDVISVSLGGDPA----DYFNDGTAIGAFHAVKHGIVVV 328 (782)
Q Consensus 254 ~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV 328 (782)
..+||+++++.|++.+.. .+..++++++|+||++ ++++|||||||.... ..+.+.+..++.+|..+||+||
T Consensus 90 g~~aP~a~~~~~~~~~~~----~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv 165 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS----ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 165 (372)
T ss_dssp HHTTSCEEEEEEEEECTT----SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEE
T ss_pred hhcCCCCcEEEEEeCCCC----CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEE
Confidence 346899999999997654 3677889999999998 899999999998621 1123456667777889999999
Q ss_pred EecCCCCCCCC-------------cccCCCCcEEEEccccCC
Q 048642 329 CSAANSGPELG-------------TVTNVSPWIITVGASTLD 357 (782)
Q Consensus 329 ~AAGN~g~~~~-------------~~~~~~p~vitVgas~~~ 357 (782)
+||||+|...+ .++..+|+|++||+++..
T Consensus 166 ~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 166 VSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp EECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred EEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99999996532 233467999999997643
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.1e-10 Score=125.12 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=53.6
Q ss_pred hHHHHHHHHhh--hCCCeEEEEccCCCCCCC---CCCHHHHHHHHHHhcCcEEEEecCCCCCCCC----------cccCC
Q 048642 280 ADILKGFDMAI--HDGVDVISVSLGGDPADY---FNDGTAIGAFHAVKHGIVVVCSAANSGPELG----------TVTNV 344 (782)
Q Consensus 280 ~~i~~ai~~a~--~~g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----------~~~~~ 344 (782)
+.++..+++.. .+-++|||+|||...... +.+.+...+.++..+||.|++|+||+|.... ..+..
T Consensus 283 e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas 362 (544)
T 3edy_A 283 EPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPAS 362 (544)
T ss_dssp CHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTT
T ss_pred ccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCC
Confidence 34555555443 356899999999983221 2233455566788999999999999996431 34456
Q ss_pred CCcEEEEccccC
Q 048642 345 SPWIITVGASTL 356 (782)
Q Consensus 345 ~p~vitVgas~~ 356 (782)
.|||++||+++.
T Consensus 363 ~P~VtaVGgT~l 374 (544)
T 3edy_A 363 SPYVTTVGGTSF 374 (544)
T ss_dssp CTTSEEEEEEEE
T ss_pred CCcEEEEeeeec
Confidence 899999999764
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.97 E-value=4.6e-10 Score=100.35 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred CCCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEE
Q 048642 28 AIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVS 107 (782)
Q Consensus 28 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~ 107 (782)
..+++|||+|++.... .....|.+|+.+++.+ .....++.|+|++.|+||+++++++++++|+++|+|.+
T Consensus 35 ~ip~~YIV~lk~~~~~---------~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~ 104 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHL---------SQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDY 104 (114)
T ss_dssp EEEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEE
T ss_pred CCCCcEEEEECCCCCH---------HHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccE
Confidence 4568999999987653 4566889999988654 22456899999999999999999999999999999999
Q ss_pred EEecccccc
Q 048642 108 IFPNKGKKL 116 (782)
Q Consensus 108 V~~~~~~~~ 116 (782)
||+++.++.
T Consensus 105 VE~D~~v~~ 113 (114)
T 2w2n_P 105 IEEDSSVFA 113 (114)
T ss_dssp EEEEEEEEE
T ss_pred EEeCceEec
Confidence 999988754
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=85.62 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=57.2
Q ss_pred CCCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEE
Q 048642 28 AIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVS 107 (782)
Q Consensus 28 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~ 107 (782)
..+++|||+||+.... .. .+..+++. ...++.++|.+ |+||+++++++++++|+++|+|.+
T Consensus 6 ~i~~~YIV~~k~~~~~---------~~--~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~ 66 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS---------CA--KKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAY 66 (80)
T ss_dssp --CCEEEEEECTTCCS---------HH--HHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEE
T ss_pred cCCCCEEEEECCCCCh---------HH--HHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccE
Confidence 4578999999987764 11 12222221 23579999998 999999999999999999999999
Q ss_pred EEecccccccccc
Q 048642 108 IFPNKGKKLHTTR 120 (782)
Q Consensus 108 V~~~~~~~~~~~~ 120 (782)
||+++.++++++.
T Consensus 67 Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 67 VEEDKLYRALSAT 79 (80)
T ss_dssp EEECCEEEECCC-
T ss_pred EEeCcEEEEeeec
Confidence 9999999887664
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=96.62 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=75.8
Q ss_pred cccccCCCCCCCCC-------ccceEEEEeeCC-cchhhhhHHHHHcCceEEEEeccCCCCCccc----cCCCcccEEEE
Q 048642 404 AASLCKNGALDHEK-------VKGKILVCLRGD-TARVDKGRQAAVAGAVGMILCNDKSSGNEIT----ADPHFLPASQI 471 (782)
Q Consensus 404 ~~~~c~~~~~~~~~-------~~gkivl~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i 471 (782)
+...|.+..+.... .+|||+|++||. |+|.+|..+|+++||.++|+||+...+.... .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 46789987654322 478999999999 9999999999999999999999853332221 12247999999
Q ss_pred ehhhHHHHHHHHhcCCCceEEEecCe
Q 048642 472 TYKDGVKVLDYIKSSDNPMGYITSPS 497 (782)
Q Consensus 472 ~~~~g~~l~~~~~~~~~~~~~i~~~~ 497 (782)
+..+|+.|++++.++...+++|....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 99999999999999988888887653
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-08 Score=91.43 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEEE
Q 048642 29 IKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSI 108 (782)
Q Consensus 29 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V 108 (782)
.+++|||+||+.... .....|.+++..+..+. ....++.|+|++.|+||++++++++++.|+++|+|.+|
T Consensus 46 Ip~~YIV~~K~~~~~---------~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~V 115 (124)
T 2qtw_A 46 LPGTYVVVLKEETHL---------SQSERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115 (124)
T ss_dssp EEEEEEEEECTTCCH---------HHHHHHHHHHHHHHHHT-TCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEE
T ss_pred CCCCEEEEECCCCCH---------HHHHHHHHHHHHHHhhc-ccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEE
Confidence 468999999987763 34455666665543211 12357999999999999999999999999999999999
Q ss_pred Eecccccc
Q 048642 109 FPNKGKKL 116 (782)
Q Consensus 109 ~~~~~~~~ 116 (782)
++++.++.
T Consensus 116 E~D~~v~a 123 (124)
T 2qtw_A 116 EEDSSVFA 123 (124)
T ss_dssp EEEEEEEE
T ss_pred EeCceEec
Confidence 99987754
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=78.17 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=58.3
Q ss_pred CeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEec-cceeeEEEEcCHHHHHHHhCC--CCeEE
Q 048642 31 QSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQ-NHINGFAATLEEEEAAEIAKH--PDVVS 107 (782)
Q Consensus 31 ~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~--p~V~~ 107 (782)
+.|||.||+.... .....|.++++..- ..+.+.|+ ..|+||+++++++.+++|+++ |.|.+
T Consensus 3 ~sYIV~lk~~~~~---------~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~ 66 (76)
T 1v5i_B 3 GKFIVIFKNDVSE---------DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDS 66 (76)
T ss_dssp EEEEEEECTTCCH---------HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEE
T ss_pred ceEEEEECCCCCH---------HHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcE
Confidence 6899999997763 55666777776652 36889994 799999999999999999999 89999
Q ss_pred EEecccccc
Q 048642 108 IFPNKGKKL 116 (782)
Q Consensus 108 V~~~~~~~~ 116 (782)
||+++.++.
T Consensus 67 VE~D~~v~~ 75 (76)
T 1v5i_B 67 IEEDHVAHA 75 (76)
T ss_dssp EEECCEEEC
T ss_pred EcCCcEEeC
Confidence 999987754
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00042 Score=54.76 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred cccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEEEEeccccc
Q 048642 71 KARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKK 115 (782)
Q Consensus 71 ~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~~~~~~~ 115 (782)
....++.++|. .+++++++++++.++.|+++|+|.+|++|...+
T Consensus 20 ~~gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 20 GIGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGTCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HCCCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 34578999998 899999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0039 Score=68.81 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=60.2
Q ss_pred CCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc--cc-cCCCcccEEEEehhhHHHHHHHHh
Q 048642 411 GALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE--IT-ADPHFLPASQITYKDGVKVLDYIK 484 (782)
Q Consensus 411 ~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 484 (782)
.++...+++|||||++||.|.|..|..+|+++||.|+|++++...... +. .....+|++.|+.++++.|.+++.
T Consensus 106 ~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 106 ADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 345556899999999999999999999999999999999998642111 11 134579999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.017 Score=63.98 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=61.3
Q ss_pred CCCccceEEEEeeCCcc---------hhhh----hHHHHHcCceEEEEeccCCCCCc--------cccCCCcccEEEEeh
Q 048642 415 HEKVKGKILVCLRGDTA---------RVDK----GRQAAVAGAVGMILCNDKSSGNE--------ITADPHFLPASQITY 473 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~---------~~~~----~~~~~~~Ga~g~i~~n~~~~~~~--------~~~~~~~~p~~~i~~ 473 (782)
..+++|||||+.|+.|. +..| ..+|.++||.|+|++|+...... .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 56899999999998884 3344 35799999999999997542211 111235799999999
Q ss_pred hhHHHHHHHHhcCCCceEEEecC
Q 048642 474 KDGVKVLDYIKSSDNPMGYITSP 496 (782)
Q Consensus 474 ~~g~~l~~~~~~~~~~~~~i~~~ 496 (782)
++++.|...+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998876666665543
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=66.59 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=55.4
Q ss_pred CCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC------------------Ccccc----------------
Q 048642 416 EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG------------------NEITA---------------- 461 (782)
Q Consensus 416 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~------------------~~~~~---------------- 461 (782)
.+++|||||+++|.|.+..|..+|.++||.|+|++++.... +....
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 58999999999999999999999999999999999975321 00000
Q ss_pred CCCcccEEEEehhhHHHHHHHHh
Q 048642 462 DPHFLPASQITYKDGVKVLDYIK 484 (782)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~ 484 (782)
....+|+..|+.++++.|...+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 02358999999999999987654
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=67.14 Aligned_cols=71 Identities=31% Similarity=0.512 Sum_probs=56.6
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC----------------------C---------CCcccc--
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS----------------------S---------GNEITA-- 461 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----------------------~---------~~~~~~-- 461 (782)
..+++|||||+++|.|.+.+|..+|+++||.|+|+|++.. . |+...+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 4589999999999999999999999999999999998621 0 111100
Q ss_pred ---------------CCCcccEEEEehhhHHHHHHHHhc
Q 048642 462 ---------------DPHFLPASQITYKDGVKVLDYIKS 485 (782)
Q Consensus 462 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 485 (782)
....||+.-|+..+++.|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 014689999999999999987754
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.047 Score=48.79 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=55.7
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEE-cCCcEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT-DGKHYVR 766 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~-~~~~~v~ 766 (782)
.+.+.++.|+|.|. +..|++.... .++++|..-++ ++|++..++|+|.+.. . ..+.+.+.+. ++...+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~-g~~~~~l~v~~~~g~~~~ 111 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS---V-GDHSGRLIVCYDTGEKVF 111 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS---S-BCCCCBCEEEESSSCEEC
T ss_pred CeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC---C-ccEEEEEEEEECCCCEEE
Confidence 67888999999999 8888877643 47789999998 7899999999999743 2 3345666654 5556666
Q ss_pred EEEEE
Q 048642 767 SPIVV 771 (782)
Q Consensus 767 ~P~~~ 771 (782)
+++.+
T Consensus 112 v~L~G 116 (122)
T 2ys4_A 112 VSLYG 116 (122)
T ss_dssp CEECC
T ss_pred EEEEE
Confidence 66544
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.69 E-value=1.9 Score=39.14 Aligned_cols=84 Identities=12% Similarity=-0.043 Sum_probs=60.0
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCC----CCceEEEEecEEEEccCCcEEEEEEEEEecCC----CCCC-ceEEEEEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREP----LGISVSVEPKILAFKKIGEEKSFKVTLKPKWS----GAPD-NYRFGELTW 758 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~----~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~----~~~~-~~~~G~i~~ 758 (782)
...+-+++|+|.|. +.+|++..... ..--++++|..-++ .+|++.++.|++..++. ...+ .-.+--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 56778889999999 99999985421 12347889999988 78999999999986541 0011 223455665
Q ss_pred -EcCCcEEEEEEEEEE
Q 048642 759 -TDGKHYVRSPIVVNQ 773 (782)
Q Consensus 759 -~~~~~~v~~P~~~~~ 773 (782)
.+++.+..||+.+.+
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 467788999988765
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.45 E-value=0.27 Score=60.45 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCCCceEEEEecCCcCcCCCCcc
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFS 165 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~ 165 (782)
.+.|+||+|||+|||||+.+|-|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 569999999999999999999995
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.52 E-value=1.9 Score=37.29 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.1
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeC-CCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEE-cC-CcE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVRE-PLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT-DG-KHY 764 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~-~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~-~~-~~~ 764 (782)
...+.+++++|.|+ +..|++.... +.+..++++|..-.+ .+|++++++|++.+.. .+.| .=.|.+. .+ ...
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~---~g~f-~~~i~v~~~g~~~~ 100 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII---LGNF-EEEFLVNVNGSPEP 100 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC---CEEE-EEEECEEESSCSSC
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC---cceE-EEEEEEEECCCCce
Confidence 46778899999999 9999883311 112357889999888 7899999999999854 2444 3345543 33 344
Q ss_pred EEEEEEEE
Q 048642 765 VRSPIVVN 772 (782)
Q Consensus 765 v~~P~~~~ 772 (782)
+++-+-+.
T Consensus 101 ~~L~i~G~ 108 (112)
T 2e6j_A 101 VKLTIRGC 108 (112)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 55555443
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=0.47 Score=52.29 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCC
Q 048642 505 SPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGA 542 (782)
Q Consensus 505 ~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 542 (782)
.+.++.||++||.. ||+|||++|+++++.+
T Consensus 183 ~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp TCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 46899999999866 9999999999998753
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=82.37 E-value=11 Score=32.83 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=42.7
Q ss_pred eEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 690 SVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 690 ~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
.-.++++|.|... +.+|.+++....++++. .+..+++ ++++..++.|.+..+.
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 5678899999999 99999999987775553 2556888 7889888888887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 782 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 6e-43 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-14 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 9e-10 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 9e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 9e-06 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 1e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 0.004 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-08 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 2e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 9e-10 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 3e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 4e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 6e-04 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-05 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 2e-08 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 6e-05 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 5e-04 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 0.004 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 159 bits (402), Expect = 6e-43
Identities = 77/524 (14%), Positives = 144/524 (27%), Gaps = 107/524 (20%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
+ ++ + I +D+G +
Sbjct: 11 VGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNA-------------------------N 43
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
+ G ++ HGTH T N
Sbjct: 44 NVTGTNNSG-------------TGNWYQPGNNNAHGTHVAGTIAAI---------ANNEG 81
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
G P + V + + + G +V+++SLGG +
Sbjct: 82 VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERN 141
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRF 372
+G++++ +A N+G + +++V A + + F
Sbjct: 142 AL---NTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAF--------- 189
Query: 373 KGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTAR 432
S+ + + + A + G T+
Sbjct: 190 -----SQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSY 244
Query: 433 VDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGY 492
A+ GA+ N S + + +++ + + +
Sbjct: 245 APAPINASATGALAECTVNGT-------------SFSCGNMANKICLVERVGNQGSSYPE 291
Query: 493 ITSPSTYLNAKPSPFMASFSSAGPNKITPEIL--KPDITAPGVNIIAAFTGAI----GAT 546
I S A + +SA P P ++ DIT P V++ A A+ G +
Sbjct: 292 INSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS 351
Query: 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANP 606
+ Y +GTSM+ PHV+GV L+ + HP+ S S +R+A+ TA
Sbjct: 352 TTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR- 410
Query: 607 MRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCS 650
G G I A YLD C+
Sbjct: 411 ----------DNQTGYGMINAVAAK-----------AYLDESCT 433
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 74.7 bits (182), Expect = 2e-14
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 526 PDITAPGVNIIAAFTG-----AIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA 580
+ APGV I++ G G E T Y+ GTSM+ PHV GVV +L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 581 HPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGL 635
P+ P IR + TA + G G ++ + A+ L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 59.7 bits (143), Expect = 9e-10
Identities = 41/317 (12%), Positives = 73/317 (23%), Gaps = 74/317 (23%)
Query: 66 LGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFPNKGKKLHTTRSWD-- 123
+ +NG + + + + + P+ ++L
Sbjct: 51 VNGKVVLELPQIKVVSIKLNGMTVK-QAYDKIKALALKGIRYVEPSYKRELIKPTVVKPN 109
Query: 124 ----------------------FMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPES 161
L I + + G +II+A +DTGV
Sbjct: 110 PDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTH 169
Query: 162 KSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTA 221
+ A Y + + +
Sbjct: 170 PDLEG-----------------------------------QVIAGYRPAFDEELPAGTDS 194
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS---DGQCF 278
GTH T G +P A++ + +G
Sbjct: 195 SYGGSAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVG 245
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL 338
D + G A G V++ S GG Y A ++VV + N+
Sbjct: 246 DDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFDYAME--HGVVMVVSAGNNTSDSH 303
Query: 339 GTVTNVSPWIITVGAST 355
P +I V A
Sbjct: 304 HQYPAGYPGVIQVAALD 320
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 66.9 bits (162), Expect = 9e-13
Identities = 51/204 (25%), Positives = 75/204 (36%), Gaps = 43/204 (21%)
Query: 436 GRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQ--ITYKDGVKVLDYIKSSDNPMGYI 493
G +++A + N N P + + VL S ++ G I
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAGSI 159
Query: 494 TSPSTYLN------AKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATE 547
+ P+ Y N + ASFS G DI APGVN+ + + G
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPG------ 205
Query: 548 LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPM 607
Y ++GTSM+ PHVAG L+K +P WS IR+ + TA + +T
Sbjct: 206 -------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGST---- 254
Query: 608 RDGSFKKATPFSYGSGHIRPNRAM 631
YGSG + A
Sbjct: 255 ----------NLYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 45.7 bits (107), Expect = 9e-06
Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 60/293 (20%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
+ + +A +G G + +A LDTG+ G VP
Sbjct: 11 VQAPAAHNRGLTGSGVKVAVLDTGISTHPDLNIRGGASFVPG------------------ 52
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
+ +D GHGTH G +
Sbjct: 53 -------------------------EPSTQDGNGHGTHV---------AGTIAALNNSIG 78
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
G +P A + A KV G + I +G + A ++G+ V ++SL + +
Sbjct: 79 VLGVAPSAELYAVKVLGA---SGSGSVSSIAQGLEWAGNNGMHVANLSL---GSPSPSAT 132
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQR- 371
A G++VV ++ NSG + + VGA+ + +F + G
Sbjct: 133 LEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDI 192
Query: 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAA-SLCKNGALDHEKVKGKIL 423
+S + Y + G + AA KN + + +++ +
Sbjct: 193 VAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLK 245
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 525 KPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDW 584
+I+APG ++ + + YN +SGTSM+ PHV+G+ + +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 585 SPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
S + +RS + A++ D ++ G G R
Sbjct: 271 SNTQLRSNLQERAKSVDIKGGY----GAAIGDDYASGFGFAR 308
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 37.9 bits (86), Expect = 0.004
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSD 166
I+++ G I IA LDTGV +
Sbjct: 13 IYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.8 bits (154), Expect = 1e-11
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 35/125 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
ASFSS GP + D+ APGV+I + G Y +GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG L+ + HP+W+ + +RS++ T + F YG G I
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD--------------SFYYGKGLINV 270
Query: 628 NRAMD 632
A
Sbjct: 271 QAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 52.6 bits (125), Expect = 7e-08
Identities = 42/224 (18%), Positives = 71/224 (31%), Gaps = 54/224 (24%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
I + + +G G ++ +A +D+G+ G
Sbjct: 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAGG----------------------- 47
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
++ + N +D+ HGTH V G +
Sbjct: 48 ------------------ASMVPSETNPFQDNNSHGTH---------VAGTVAALNNSIG 80
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
G +P A + A KV +DG + I+ G + AI + +DVI++SLGG
Sbjct: 81 VLGVAPSASLYAVKVLG---ADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKA 137
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELG-TVTNVSPWIITVGAST 355
A + + + SG P +I VGA
Sbjct: 138 AVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVD 181
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 63.0 bits (152), Expect = 2e-11
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 27/106 (25%)
Query: 525 KPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDW 584
+ ++ APG + + + P +T Y ++GTSM+ PHVAG L+ + HP+
Sbjct: 194 ELEVMAPGAGVYSTY---------PTNT----YATLNGTSMASPHVAGAAALILSKHPNL 240
Query: 585 SPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRA 630
S S +R+ + +TA + F YG G I A
Sbjct: 241 SASQVRNRLSSTATYLGS--------------SFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 58.0 bits (139), Expect = 9e-10
Identities = 66/321 (20%), Positives = 104/321 (32%), Gaps = 70/321 (21%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
I + +G G ++ +A LDTG+
Sbjct: 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDL---------------------------- 42
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
++G F V D GHGTH G
Sbjct: 43 NVVGGASF--------------VAGEAYNTDGNGHGTHV---------AGTVAALDNTTG 79
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
G +P + A KV S G + I+ G + A +G+DVI++S +
Sbjct: 80 VLGVAPSVSLYAVKVLN---SSGSGSYSGIVSGIEWATTNGMDVINMS---LGGASGSTA 133
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPW----IITVGASTLDREFQNFVELRN 368
+A G+VVV +A NSG T T P +I VGA + +F +
Sbjct: 134 MKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA 193
Query: 369 GQRFK--GTSLSKSLPNDTFYPLITGLQAKAANADDTAA-SLCKNGALDHEKVKGKIL-- 423
G + + P +T Y + G + + AA L K+ L +V+ ++
Sbjct: 194 ELEVMAPGAGVYSTYPTNT-YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
Query: 424 VCLRGDTARVDKGR---QAAV 441
G + KG +AA
Sbjct: 253 ATYLGSSFYYGKGLINVEAAA 273
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.3 bits (152), Expect = 3e-11
Identities = 17/84 (20%), Positives = 34/84 (40%)
Query: 549 PYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMR 608
D R+ +GTS S P AG++ L A+ + + ++ ++ T++ A+
Sbjct: 245 TTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWA 304
Query: 609 DGSFKKATPFSYGSGHIRPNRAMD 632
+ SYG G + +
Sbjct: 305 TNGVGRKVSHSYGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 59.5 bits (142), Expect = 4e-10
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 524 LKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD 583
+KPD+ APG I++A + + + Y M GTSM+ P VAG V L+
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVK 274
Query: 584 -----WSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632
PS +++A++ A + G G + +++++
Sbjct: 275 NRGITPKPSLLKAALIAGAADIGLGYP-----------NGNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 40.2 bits (92), Expect = 6e-04
Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 48/218 (22%)
Query: 131 GVIHSSSAWGK-GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVR 189
G++ + A G +G+ I+A DTG+ S
Sbjct: 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSM----------------------- 42
Query: 190 CNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMG 249
+ + A Y ++ N A D GHGTH +
Sbjct: 43 ------HEAFRGKITALY------ALGRTNNANDTNGHGTHVAGS-----------VLGN 79
Query: 250 NGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
T KG +P+A + + +++ F A G + + S G +
Sbjct: 80 GSTNKGMAPQANLVFQSIMDSG-GGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAY 138
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPW 347
+ + K+ + ++ +A N GP GT++
Sbjct: 139 TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTA 176
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.1 bits (136), Expect = 3e-09
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANP-MRDGSFKKA 615
N GTS + P AGV LL A+P+ + ++ + +A + A+ RD + K
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 616 TPFSYGSGHIRPNRAMD 632
YG G I ++ ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 54.6 bits (130), Expect = 1e-08
Identities = 44/231 (19%), Positives = 66/231 (28%), Gaps = 54/231 (23%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
++ AW + IA +DTGV +
Sbjct: 18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK------------------------- 52
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
V + V+ + D HGTH A + GM
Sbjct: 53 ---------------VIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAGMAPN- 96
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
R+ A + +G +DI A G +VI++SLG D +
Sbjct: 97 -------TRILAVRALD---RNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLEN 146
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNF 363
+A G VVV +A N+G +I VGA +F
Sbjct: 147 ---AVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASF 194
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 36/125 (28%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSC 567
+ASFS+ G D+ APGV+I++ TG Y MSGTSM+
Sbjct: 191 LASFSNYGTW--------VDVVAPGVDIVSTITG-------------NRYAYMSGTSMAS 229
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRP 627
PHVAG+ LL + IR AI TA T + G I
Sbjct: 230 PHVAGLAALLA--SQGRNNIEIRQAIEQTADKISGTGT-------------YFKYGRINS 274
Query: 628 NRAMD 632
A+
Sbjct: 275 YNAVT 279
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 549 PYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANP 606
+SGTSM+ PHVAG+ L T + SA R I TA D + P
Sbjct: 209 LSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANKGDLSNIP 265
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 48/291 (16%), Positives = 72/291 (24%), Gaps = 55/291 (18%)
Query: 133 IHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNR 192
I + AW G IA +DTGV +
Sbjct: 18 IQAPQAWDIAE-GSGAKIAIVDTGVQSNHPDLAG-------------------------- 50
Query: 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGT 252
+ + N S N G +
Sbjct: 51 ---------KVVGGWDFVDNDSTPQNGNGHGTHCAGIAA-------------AVTNNSTG 88
Query: 253 AKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312
G +PKA + A +V G + G A G VIS+SLGG +
Sbjct: 89 IAGTAPKASILAVRVLDNS---GSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ 145
Query: 313 TAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRF 372
+A G VVV +A N+G I V ++ + +F +
Sbjct: 146 ---AVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDV 202
Query: 373 KGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423
S T + A A L + ++ I
Sbjct: 203 AAPGSSIYSTYPTSTYASLSGTSMATPHVAGVAGLLASQGRSASNIRAAIE 253
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKAT 616
Y +SGTSM+ PHVAGV GLL + S S IR+AI TA T
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT----------- 264
Query: 617 PFSYGSGHIRPNRAMD 632
+ G + +A+
Sbjct: 265 --YWAKGRVNAYKAVQ 278
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 40.7 bits (94), Expect = 5e-04
Identities = 23/184 (12%), Positives = 51/184 (27%), Gaps = 7/184 (3%)
Query: 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510
+ G + + V +S T + L++ A+
Sbjct: 174 ECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDS-NGKLWAT 232
Query: 511 FSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHV 570
+ P PG ++ + + GTS++ P
Sbjct: 233 GGGYSVYESKPSWQSVVSGTPGRRLLPDISFDAAQGTGALIYNYGQLQQIGGTSLASPIF 292
Query: 571 AGVVGLLKTAHPD----WSPSAIRSAIMTTARTRDNTA--NPMRDGSFKKATPFSYGSGH 624
G+ L++A+ + + S + T + D + N + T + Y +G
Sbjct: 293 VGLWARLQSANSNSLGFPAASFYSAISSTPSLVHDVKSGNNGYGGYGYNAGTGWDYPTGW 352
Query: 625 IRPN 628
+
Sbjct: 353 GSLD 356
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 37.8 bits (86), Expect = 0.004
Identities = 23/144 (15%), Positives = 39/144 (27%), Gaps = 13/144 (9%)
Query: 196 GARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKG 255
G Y + A Y +S + +G G + A
Sbjct: 34 GGGYDETSLAQYFASLGVSAP-QVVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALA-- 90
Query: 256 GSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTA- 314
P A++A Y + ++S+S GG + A
Sbjct: 91 --PGAKIAVYFAPNTDAGFLNAITTAV-----HDPTHKPSIVSISWGGPEDSWAPASIAA 143
Query: 315 --IGAFHAVKHGIVVVCSAANSGP 336
A G+ V+ +A +SG
Sbjct: 144 MNRAFLDAAALGVTVLAAAGDSGS 167
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 782 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.77 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.56 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.71 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.55 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.11 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=3e-53 Score=496.48 Aligned_cols=372 Identities=21% Similarity=0.222 Sum_probs=268.6
Q ss_pred CCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHH----HH--HhCC
Q 048642 29 IKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEA----AE--IAKH 102 (782)
Q Consensus 29 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~----~~--L~~~ 102 (782)
.+++|||.||+... ..++++.+ + .++++.+. .++.+.++++...+ +. +..+
T Consensus 30 ~~~~~iV~~k~~~~---------------~~~~~~~~-~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (671)
T d1r6va_ 30 TEGKILVGYNDRSE---------------VDKIVKAV-N------GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALAL 86 (671)
T ss_dssp CTTEEEEEESSHHH---------------HHHHHHHH-T------CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCC
T ss_pred CCCeEEEEECCccC---------------HHHHHHhc-C------CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcC
Confidence 47899999997432 22233322 2 34566665 56777777764322 22 2358
Q ss_pred CCeEEEEecccccccccc---------------------------cccccccccCCcccCCCccccCCCCCceEEEEecC
Q 048642 103 PDVVSIFPNKGKKLHTTR---------------------------SWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDT 155 (782)
Q Consensus 103 p~V~~V~~~~~~~~~~~~---------------------------s~~~~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDt 155 (782)
|+|++|+|+...++.... ....|+++.++ +.++|....+|+||+||||||
T Consensus 87 ~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~---~~~a~~~~~tG~gV~VaViDt 163 (671)
T d1r6va_ 87 KGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIG---VTQQLWEEASGTNIIVAVVDT 163 (671)
T ss_dssp SSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTT---CCHHHHHHCSCTTCEEEEEES
T ss_pred CCceEECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcC---ccHHHHhcCCCCCCEEEEEcC
Confidence 999999998655432100 01123343332 344444456999999999999
Q ss_pred CcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhh
Q 048642 156 GVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTA 235 (782)
Q Consensus 156 Gid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGii 235 (782)
|||++||+|.++ ++..+++..+.+.. ...++.|..||||||||||
T Consensus 164 Gvd~~Hpdl~~~--------------------------~~~~~~~~~~~~~~---------~~~~~~d~~gHGT~VAGii 208 (671)
T d1r6va_ 164 GVDGTHPDLEGQ--------------------------VIAGYRPAFDEELP---------AGTDSSYGGSAGTHVAGTI 208 (671)
T ss_dssp CCBTTSGGGTTT--------------------------BCCEEEGGGTEEEC---------TTCBCCTTCSHHHHHHHHH
T ss_pred CcCCCChhhcCC--------------------------cccCccccccCCCC---------CCCcCcccCCCCcccccee
Confidence 999999999754 22222222110000 1234567889999999999
Q ss_pred hccCCCCccccccCCCcceecCccccccccccccCCC---CCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCCCCCCH
Q 048642 236 GGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV---SDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDG 312 (782)
Q Consensus 236 ag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~---~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~ 312 (782)
||+. ++..+.||||+|+|+++|++++.. ..|....+.+++||+||+++|++|||||||+. .....
T Consensus 209 aa~~---------~~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~---~~~~~ 276 (671)
T d1r6va_ 209 AAKK---------DGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGW---GYSYT 276 (671)
T ss_dssp HCCC---------SSSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBS---CCCHH
T ss_pred eeec---------cccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEecccccc---cCChH
Confidence 9974 223458999999999999987521 11346678899999999999999999999986 34456
Q ss_pred HHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEe
Q 048642 313 TAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLIT 391 (782)
Q Consensus 313 ~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~ 391 (782)
+..++..|.++|+++|+||||++... ...+...|++|+|||++....
T Consensus 277 ~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~-------------------------------- 324 (671)
T d1r6va_ 277 MKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG-------------------------------- 324 (671)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT--------------------------------
T ss_pred HHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC--------------------------------
Confidence 77788889999999999999998654 345567899999998643210
Q ss_pred cccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEE
Q 048642 392 GLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQI 471 (782)
Q Consensus 392 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i 471 (782)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCC---
Q 048642 472 TYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATEL--- 548 (782)
Q Consensus 472 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~--- 548 (782)
...++.||+|||.. ||+|||++|+++++........
T Consensus 325 ---------------------------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~ 363 (671)
T d1r6va_ 325 ---------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHN 363 (671)
T ss_dssp ---------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCC
T ss_pred ---------------------------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCcccccccc
Confidence 12578999999986 9999999999998754322111
Q ss_pred --CCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccC
Q 048642 549 --PYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626 (782)
Q Consensus 549 --~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd 626 (782)
......+.|..++|||||||||||++|||+|++|+|++.|||++|++||++++..+ .+..||||+||
T Consensus 364 ~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-----------~~~~~G~G~vn 432 (671)
T d1r6va_ 364 ENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-----------WDHDTGYGLVK 432 (671)
T ss_dssp TTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-----------CBTTTBTCBCC
T ss_pred ccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-----------CCCCcccChhC
Confidence 11123468999999999999999999999999999999999999999999875432 46789999999
Q ss_pred ccccCCCCccc
Q 048642 627 PNRAMDPGLVY 637 (782)
Q Consensus 627 ~~~A~~~~lv~ 637 (782)
+.+||+..+..
T Consensus 433 a~~Av~~~~~~ 443 (671)
T d1r6va_ 433 LDAALQGPLPT 443 (671)
T ss_dssp HHHHHHCCCCS
T ss_pred HHHHhhCcCCC
Confidence 99999865543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.1e-49 Score=446.28 Aligned_cols=379 Identities=20% Similarity=0.252 Sum_probs=245.4
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
||+..++ +..+|. .+|+||+|||||||||++||+|+++ ++..+++...
T Consensus 6 wg~~~i~---a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~--------------------------~~~~~~~~~~- 53 (435)
T d1v6ca_ 6 WGQTFVG---ATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN--------------------------NVTGTNNSGT- 53 (435)
T ss_dssp HHHHHTT---GGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS--------------------------EEEECCCTTS-
T ss_pred ccHhhcC---cchhhh--cCCCCcEEEEEcCCCCCCChhhccC--------------------------eeeeeccCCC-
Confidence 3555443 456665 4799999999999999999999754 2222222211
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCc--cccccccccccCCCCCCCCChhHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSP--KARVAAYKVCWPQVSDGQCFDADI 282 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~l~~~kv~~~~~~~g~~~~~~i 282 (782)
+ +...+.|++||||||||||||+.. +..+.|||| +++|+.+|++... ..+...++
T Consensus 54 ----~-------~~~~~~d~~gHGThvAgiiag~~~---------~~g~~GvAp~~~~~l~~~~~~~~~---~~~~~~~~ 110 (435)
T d1v6ca_ 54 ----G-------NWYQPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQNANIHIVKVFNEA---GWGYSSSL 110 (435)
T ss_dssp ----C-------CTTCCCSSCCHHHHHHHHHHCCCS---------SSBCCCSSCSSCSEEEEEECEETT---EECCSSCH
T ss_pred ----C-------CCCCCCCCCCcHHHHHHHHhccCC---------CCceEEEecccCceeeeeeccccc---ccchhhhh
Confidence 0 234677899999999999999852 234589999 8999999998766 35677789
Q ss_pred HHHHHHhhh-CCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccce
Q 048642 283 LKGFDMAIH-DGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQ 361 (782)
Q Consensus 283 ~~ai~~a~~-~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~ 361 (782)
++||+++++ ++++|||+|||... ....+..++..+.++|+++|+||||+|.....++...+++|+||+++.+....
T Consensus 111 ~~a~~~a~~~~~~~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~ 187 (435)
T d1v6ca_ 111 VAAIDTCVNSGGANVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187 (435)
T ss_dssp HHHHHHHHHTTCCSEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBC
T ss_pred hhHHHHHhhcccceEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcc
Confidence 999999986 69999999999872 34556677778899999999999999988888888899999999987765433
Q ss_pred eeEEecCCeEE--eeeeccCCC-----------------CCCccc---ceEecccccccCC-C---ccccccc--CCCCC
Q 048642 362 NFVELRNGQRF--KGTSLSKSL-----------------PNDTFY---PLITGLQAKAANA-D---DTAASLC--KNGAL 413 (782)
Q Consensus 362 ~~~~~~~~~~~--~g~~~~~~~-----------------~~~~~~---pl~~~~~~~~~~~-~---~~~~~~c--~~~~~ 413 (782)
.+...+....+ .|..+.... +..... .+........... . ......| ....+
T Consensus 188 ~~s~~g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (435)
T d1v6ca_ 188 AFSQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSF 267 (435)
T ss_dssp TTSCCCSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEE
T ss_pred cccCCCCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCcee
Confidence 22222211111 111100000 000000 0000000000000 0 0000001 11122
Q ss_pred CCCCccceEEEEeeCCc-----chhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCC
Q 048642 414 DHEKVKGKILVCLRGDT-----ARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDN 488 (782)
Q Consensus 414 ~~~~~~gkivl~~~g~~-----~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 488 (782)
...++.+++.++.+... ............++.+++.+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 312 (435)
T d1v6ca_ 268 SCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS----------------------------------- 312 (435)
T ss_dssp ECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCS-----------------------------------
T ss_pred eccccccccceeeccCCccccceeeeeceeecccCCcceEEeccC-----------------------------------
Confidence 34456677777776432 24455556666666666655432
Q ss_pred ceEEEecCeeeccCCCCCccccccCCCCCCC--CCCCcCCeEEeCCceEEEeecCCCCC----CCCCCCCCCcceeeecc
Q 048642 489 PMGYITSPSTYLNAKPSPFMASFSSAGPNKI--TPEILKPDITAPGVNIIAAFTGAIGA----TELPYDTRRIPYNIMSG 562 (782)
Q Consensus 489 ~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~--~~~~~KPDI~APG~~I~sa~~~~~~~----~~~~~~~~~~~y~~~sG 562 (782)
.+|... .....||||.+||..|.++....... ...........|..|||
T Consensus 313 -------------------------~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sG 367 (435)
T d1v6ca_ 313 -------------------------ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNG 367 (435)
T ss_dssp -------------------------SSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECS
T ss_pred -------------------------CCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEcc
Confidence 222211 12457889999998886553211000 00000112347999999
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 563 TSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 563 TSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
||||||||||++|||||+||+|+|+|||++||+||+++.. +++++.||+|+||+.+|++
T Consensus 368 TSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 368 TSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHHH
Confidence 9999999999999999999999999999999999998743 3467899999999999963
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.7e-49 Score=416.18 Aligned_cols=260 Identities=31% Similarity=0.371 Sum_probs=212.7
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|+++.+|+||+|||||||||++||+|.++ ++..++|..
T Consensus 20 ~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~------------ 61 (280)
T d1dbia_ 20 TDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVD------------ 61 (280)
T ss_dssp HHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTT------------
T ss_pred HHHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccC------------
Confidence 678999999999999999999999999999753 333333322
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..+|||||||+|+|... +...+.||||+|+|+.+|+++.. +.+...++++||++++++|+
T Consensus 62 --~~~~~~d~~~HGT~vag~i~~~~~--------~~~~~~GvAp~a~l~~~~v~~~~---~~~~~~~~~~ai~~a~~~g~ 128 (280)
T d1dbia_ 62 --NDYDPMDLNNHGTHVAGIAAAETN--------NATGIAGMAPNTRILAVRALDRN---GSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp --TBSCCCCSSSHHHHHHHHHHCCCS--------SSSSCCCSSSSCEEEEEECCCTT---SCCCHHHHHHHHHHHHHTTC
T ss_pred --CCCccccccccccceeEeeecccc--------CCCceeEEeccCEEEEEEEeCCC---CCcCHHHHHHHHHHHHHcCC
Confidence 233567889999999999998742 23456899999999999999876 46789999999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||.. ...+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 129 ~iin~S~g~~---~~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------------------ 187 (280)
T d1dbia_ 129 EVINLSLGCD---CHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------------ 187 (280)
T ss_dssp SEEEECCSSC---CCCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT------------------
T ss_pred cEeecccccc---ccchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC------------------
Confidence 9999999987 2344455677788999999999999999776666777899999998542
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
.+.++.||++||.. |++|||.+
T Consensus 188 --------------------------------------------------~~~~a~~S~~g~~~--------d~~apg~~ 209 (280)
T d1dbia_ 188 --------------------------------------------------YDRLASFSNYGTWV--------DVVAPGVD 209 (280)
T ss_dssp --------------------------------------------------TSCBCTTBCCSTTC--------CEEEECSS
T ss_pred --------------------------------------------------CCCcCCcCCCCCcc--------cccCCccc
Confidence 24788999999976 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (782)
|++..... .|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 210 i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~------------ 262 (280)
T d1dbia_ 210 IVSTITGN-------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG------------ 262 (280)
T ss_dssp EEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT------------
T ss_pred eeccccCc-------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC------------
Confidence 99998764 8999999999999999999999995 55899999999999987642
Q ss_pred CCCCcccccccCccccCC
Q 048642 615 ATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 615 ~~~~~~G~G~vd~~~A~~ 632 (782)
++..||+|+||+++||+
T Consensus 263 -~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 -TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -BTTTBSSEECCHHHHHT
T ss_pred -CCCcCCCCeEcHHHHcC
Confidence 24579999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=4.7e-49 Score=413.71 Aligned_cols=258 Identities=31% Similarity=0.439 Sum_probs=215.0
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|..+++|+||+|||||||||++||+|+. ...++|..
T Consensus 13 ~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~----------------------------~~~~~~~~------------ 52 (274)
T d1r0re_ 13 ADKVQAQGFKGANVKVAVLDTGIQASHPDLNV----------------------------VGGASFVA------------ 52 (274)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCE----------------------------EEEEECST------------
T ss_pred hHHHHHcCCCCCCeEEEEECCCCCCCChhhcc----------------------------cCCccccC------------
Confidence 56899999999999999999999999999952 12233332
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..+|||||||||++... ...+.|+||+|+|+.+|+++.. +.+..++++++++++.++++
T Consensus 53 --~~~~~~d~~gHGT~vAgii~~~~~---------~~~~~gvap~a~i~~~~~~~~~---~~~~~~~i~~ai~~a~~~~~ 118 (274)
T d1r0re_ 53 --GEAYNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLNSS---GSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp --TCCTTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSCTT---SEECHHHHHHHHHHHHHTTC
T ss_pred --CCCCCCCccccccccccccccccc---------cccccccCCCcEEEEEEEeCCC---CCcCHHHHHHHHHHHHhcCC
Confidence 123456788999999999998752 2345899999999999999876 46678999999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC----cccCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG----TVTNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
+|||+|||... ..........++.++++++|+||||+|.... ..+...+++|+|||.+.
T Consensus 119 ~i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~-------------- 181 (274)
T d1r0re_ 119 DVINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS-------------- 181 (274)
T ss_dssp SEEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT--------------
T ss_pred ceecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC--------------
Confidence 99999999872 3344556667888999999999999986532 23345688999998542
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.+++||++||.+ ||+|
T Consensus 182 ------------------------------------------------------~~~~~~~s~~g~~~--------di~A 199 (274)
T d1r0re_ 182 ------------------------------------------------------NSNRASFSSVGAEL--------EVMA 199 (274)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcccccCCCCCE--------EEEe
Confidence 24678999999854 9999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
||++|+++.+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++.
T Consensus 200 PG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------- 257 (274)
T d1r0re_ 200 PGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG--------- 257 (274)
T ss_dssp ECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS---------
T ss_pred cCCCcccccCCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------
Confidence 999999998765 8899999999999999999999999999999999999999998752
Q ss_pred CCCCCCCCcccccccCccccCC
Q 048642 611 SFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
++..||+|+||+.+|+|
T Consensus 258 -----~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 -----SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCceEcCeecHHHhcC
Confidence 35689999999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=8.1e-49 Score=413.37 Aligned_cols=260 Identities=32% Similarity=0.469 Sum_probs=216.5
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
++.+|.++++|+||+|||||||||++||+|+.. ..+++...
T Consensus 13 a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~----------------------------~~~~~~~~----------- 53 (281)
T d1to2e_ 13 APALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA----------------------------GGASMVPS----------- 53 (281)
T ss_dssp HHHHHHHTCSCTTCEEEEEESCCCTTCTTCCEE----------------------------EEEECCTT-----------
T ss_pred cHHHHHCCCCCCCeEEEEECCCCCCCChhhhhc----------------------------CCccccCC-----------
Confidence 678999999999999999999999999999632 11222211
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
+.....+..+|||||||||+|.. .+....||||+|+|+.+|++..+ +.+...++++||+|+++.++
T Consensus 54 --~~~~~~~~~~HGT~vAgiiag~~---------~~~~~~giAp~a~l~~~kv~~~~---~~~~~~~~~~ai~~a~~~~~ 119 (281)
T d1to2e_ 54 --ETNPFQDNNSHGTHVAGTVAALN---------NSIGVLGVAPSASLYAVKVLGAD---GSGQYSWIINGIEWAIANNM 119 (281)
T ss_dssp --CCCTTCCSSSHHHHHHHHHHCCS---------SSSSBCCSSTTSEEEEEECSCTT---SEECHHHHHHHHHHHHHTTC
T ss_pred --CCCCCcCcCCCCceeecccccCC---------CCCCcceeecccEEEEEEEeCCC---CCcCHHHHHHHHHHHHhccc
Confidence 12223356799999999999974 12345899999999999999876 45678899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC----cccCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG----TVTNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
+|||+|||.. .....+..++.++.++|+++|+||||+|.... ..+...+++|+||+++.
T Consensus 120 ~v~n~S~g~~---~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~-------------- 182 (281)
T d1to2e_ 120 DVINMSLGGP---SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS-------------- 182 (281)
T ss_dssp SEEEECEEBS---CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT--------------
T ss_pred cccccccCCC---cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC--------------
Confidence 9999999987 34566777888899999999999999986532 23445688999998542
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.++.||++||.. |+.|
T Consensus 183 ------------------------------------------------------~~~~~~~S~~G~~~--------d~~a 200 (281)
T d1to2e_ 183 ------------------------------------------------------SNQRASFSSVGPEL--------DVMA 200 (281)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCCCcccCCCCCc--------cccC
Confidence 24678999999987 9999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
||.+|+++.+.+ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 201 pG~~i~s~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~--------- 258 (281)
T d1to2e_ 201 PGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG--------- 258 (281)
T ss_dssp ECSSEEEEETTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS---------
T ss_pred CCCCceeecCCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------
Confidence 999999998865 8899999999999999999999999999999999999999998763
Q ss_pred CCCCCCCCcccccccCccccCCC
Q 048642 611 SFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
++..||+|+||+.+|++-
T Consensus 259 -----~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 -----DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -----CHHHHTTCBCCHHHHTSS
T ss_pred -----CCCCcccCcccHHHHHhh
Confidence 245799999999999983
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.4e-48 Score=411.06 Aligned_cols=266 Identities=31% Similarity=0.409 Sum_probs=223.6
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
|+++.++ +.++|+.+ +|+||+|+|||||||++||+|.++ ++..++|.+
T Consensus 13 w~l~~i~---a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~--------------------------~~~~~~~~~-- 60 (279)
T d1thma_ 13 YGPQKIQ---APQAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK--------------------------VVGGWDFVD-- 60 (279)
T ss_dssp CHHHHTT---HHHHHTTC-CCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEETTT--
T ss_pred cChhhCC---HHHHHhcc-CCCCcEEEEEcCCCCCCChhhcCC--------------------------eeccccccc--
Confidence 4555443 67899887 999999999999999999999753 334444432
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK 284 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ 284 (782)
....+.|..+|||||||+|++... +...+.||||+|+|+.+|++... +.+...++++
T Consensus 61 ------------~~~~~~d~~~HGT~vag~i~~~~~--------~~~~~~GvAp~a~l~~~~v~~~~---~~~~~~~~~~ 117 (279)
T d1thma_ 61 ------------NDSTPQNGNGHGTHCAGIAAAVTN--------NSTGIAGTAPKASILAVRVLDNS---GSGTWTAVAN 117 (279)
T ss_dssp ------------TBSCCCCSSSHHHHHHHHHHCCCS--------SSSSCCCSSTTCEEEEEECSCTT---SCCCHHHHHH
T ss_pred ------------cCcccccccccccccceeeeeccC--------CCccccccCCcceEEEEEEEecC---CCCcHHHHHH
Confidence 234567889999999999999853 23456899999999999999876 4678899999
Q ss_pred HHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeE
Q 048642 285 GFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFV 364 (782)
Q Consensus 285 ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~ 364 (782)
+|+++++.+++|+|+|||.. ........+...+.++|+++|+|+||+|..........+++|+|||++.
T Consensus 118 ai~~~~~~~~~i~n~S~G~~---~~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~-------- 186 (279)
T d1thma_ 118 GITYAADQGAKVISLSLGGT---VGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ-------- 186 (279)
T ss_dssp HHHHHHHTTCSEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT--------
T ss_pred HHHHHhhcCCceeccccCcc---ccchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC--------
Confidence 99999999999999999987 3345566677788999999999999999887777778899999998543
Q ss_pred EecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCc
Q 048642 365 ELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGA 444 (782)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 444 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCc
Q 048642 445 VGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEIL 524 (782)
Q Consensus 445 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 524 (782)
.+.++.||++|++.
T Consensus 187 ------------------------------------------------------------~~~~~~~S~~G~~~------ 200 (279)
T d1thma_ 187 ------------------------------------------------------------NDNKSSFSTYGSWV------ 200 (279)
T ss_dssp ------------------------------------------------------------TSCBCTTCCCCTTC------
T ss_pred ------------------------------------------------------------CCCCccccCCCceE------
Confidence 24688999999987
Q ss_pred CCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCC
Q 048642 525 KPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTA 604 (782)
Q Consensus 525 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g 604 (782)
||.|||.+|+++.+.+ .|..++|||||||+|||++|||+|.+| ++.+||++|++||+++..
T Consensus 201 --di~Apg~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-- 261 (279)
T d1thma_ 201 --DVAAPGSSIYSTYPTS-------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-- 261 (279)
T ss_dssp --CEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--
T ss_pred --EEeeeeeccccccCcc-------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--
Confidence 9999999999999875 899999999999999999999999765 789999999999987642
Q ss_pred CCCCCCCCCCCCCCcccccccCccccCC
Q 048642 605 NPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 605 ~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
.+..||+|+||+.+||+
T Consensus 262 -----------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 262 -----------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----------BTTTBSSEECCHHHHHH
T ss_pred -----------CCCcceeeeEcHHHhhC
Confidence 35579999999999985
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=2.2e-48 Score=407.23 Aligned_cols=257 Identities=31% Similarity=0.437 Sum_probs=218.4
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|.++++|+||+||||||||| +||+|... ..++|.+
T Consensus 13 ~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~----------------------------~~~~~~~------------ 51 (269)
T d1gcia_ 13 APAAHNRGLTGSGVKVAVLDTGIS-THPDLNIR----------------------------GGASFVP------------ 51 (269)
T ss_dssp HHHHHHTTCSCTTCEEEEEESCCC-CCTTCCEE----------------------------EEEECST------------
T ss_pred cHHHHhCCCCCCCeEEEEECCCCC-CCcccCcc----------------------------ccccccC------------
Confidence 678999999999999999999998 89999632 1222322
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..+|||||||||++.. +.....|+||+|+|+.+|++... +.+....+.++|+++..+++
T Consensus 52 --~~~~~~d~~~HGT~vAgii~~~~---------~~~~~~giap~a~i~~~~v~~~~---~~~~~~~~~~ai~~~~~~~~ 117 (269)
T d1gcia_ 52 --GEPSTQDGNGHGTHVAGTIAALN---------NSIGVLGVAPSAELYAVKVLGAS---GSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp --TCCSCSCSSSHHHHHHHHHHCCC---------SSSBCCCSSTTCEEEEEECBCTT---SCBCHHHHHHHHHHHHHTTC
T ss_pred --CCCCccccchhhheecccccccC---------CCccccccCCceEEEEEEEecCC---CCccHHHHHHHHHHHHhccc
Confidence 13356688999999999999875 23445799999999999999877 46778889999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
++||+|||.. ........+...+.++|+++|+||||+|.....++...|++|+||+++.+
T Consensus 118 ~~in~s~g~~---~~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------- 177 (269)
T d1gcia_ 118 HVANLSLGSP---SPSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------------- 177 (269)
T ss_dssp SEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------
T ss_pred cccccccccc---cccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-----------------
Confidence 9999999987 23344556677889999999999999998777777788999999985432
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+.++.||++||.. ||+|||.+
T Consensus 178 ---------------------------------------------------~~~~~~S~~G~~~--------di~Apg~~ 198 (269)
T d1gcia_ 178 ---------------------------------------------------NNRASFSQYGAGL--------DIVAPGVN 198 (269)
T ss_dssp ---------------------------------------------------SCBCTTCCCSTTE--------EEEEECSS
T ss_pred ---------------------------------------------------CCcccccCCCCCc--------eEEEeeec
Confidence 4678999999976 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCC
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKK 614 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 614 (782)
+.++.+.. .|..++|||||||+|||++|||+|++|++++++||++|++||+++.
T Consensus 199 ~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g------------- 252 (269)
T d1gcia_ 199 VQSTYPGS-------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------------- 252 (269)
T ss_dssp EEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-------------
T ss_pred ceeccCCC-------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-------------
Confidence 99998765 8999999999999999999999999999999999999999998763
Q ss_pred CCCCcccccccCccccCC
Q 048642 615 ATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 615 ~~~~~~G~G~vd~~~A~~ 632 (782)
++..||+|+||+++|++
T Consensus 253 -~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 253 -STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -CHHHHTTCBCCHHHHTC
T ss_pred -CCCCcccCeEcHHHhcC
Confidence 24579999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=7.9e-44 Score=380.30 Aligned_cols=295 Identities=26% Similarity=0.324 Sum_probs=221.0
Q ss_pred cccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhH
Q 048642 125 MLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAY 204 (782)
Q Consensus 125 ~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~ 204 (782)
||+..++ +..+|..+++|+||+|||||||||++||+|.++ +...++|....
T Consensus 8 wgl~~i~---~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~--------------------------~~~~~~~~~~~ 58 (309)
T d2ixta1 8 WGIKAIY---NNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN--------------------------VEQCKDFTGAT 58 (309)
T ss_dssp HHHHHHH---TCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT--------------------------EEEEEESSSSS
T ss_pred hhHhhcC---ChhhhccCCCCCCeEEEEEccCCCCCChhHhcc--------------------------ccccccccCCC
Confidence 4555433 678999999999999999999999999999753 33333333210
Q ss_pred hhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHH
Q 048642 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK 284 (782)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ 284 (782)
. + ......|..+|||||||||+|...+ +...+.||||+|+|+.++++... +.+..++++.
T Consensus 59 ~------~----~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~ 118 (309)
T d2ixta1 59 T------P----INNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDS---GSGYSDDIAA 118 (309)
T ss_dssp S------C----EETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTT---SCCCHHHHHH
T ss_pred C------C----CCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCC---CCcccccccc
Confidence 0 0 1235567889999999999997522 23446899999999999998876 4678889999
Q ss_pred HHHHhhhC-----CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccC--CCCcEEEEccccCC
Q 048642 285 GFDMAIHD-----GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTLD 357 (782)
Q Consensus 285 ai~~a~~~-----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~--~~p~vitVgas~~~ 357 (782)
+++++++. ...|+|+||+.. ........+...+.++|+++|+||||++........ ..+++++|++.+..
T Consensus 119 ~~~~a~~~~~~~~~~~v~~~s~~~~---~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~ 195 (309)
T d2ixta1 119 AIRHAADQATATGTKTIISMSLGSS---ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENV 195 (309)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCBS---SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEE
T ss_pred ccccccccccccccccccccccccc---ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccc
Confidence 99998875 447999999987 334455666778889999999999999876554433 45788888865432
Q ss_pred ccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhH
Q 048642 358 REFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGR 437 (782)
Q Consensus 358 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~ 437 (782)
.......
T Consensus 196 ~~~~~~~------------------------------------------------------------------------- 202 (309)
T d2ixta1 196 QQNGTYR------------------------------------------------------------------------- 202 (309)
T ss_dssp EETTEEE-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 1100000
Q ss_pred HHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCC
Q 048642 438 QAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPN 517 (782)
Q Consensus 438 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 517 (782)
.........++++|+.
T Consensus 203 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 218 (309)
T d2ixta1 203 ----------------------------------------------------------------VADYSSRGYISTAGDY 218 (309)
T ss_dssp ----------------------------------------------------------------ECTTSCCCCTTTTTSS
T ss_pred ----------------------------------------------------------------cccccccccccccccc
Confidence 0001234456777776
Q ss_pred CCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcc
Q 048642 518 KITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597 (782)
Q Consensus 518 ~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA 597 (782)
. ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|+|++.+||++|++||
T Consensus 219 ~--~~~~~vdi~apG~~~~s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA 283 (309)
T d2ixta1 219 V--IQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283 (309)
T ss_dssp S--CCTTCCCEEEECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred c--cCCCcceeecCCCceeeecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhC
Confidence 5 5668999999999999998765 899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccccccCc
Q 048642 598 RTRDNTANPMRDGSFKKATPFSYGSGHIRP 627 (782)
Q Consensus 598 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~ 627 (782)
++++..+.. ......++.+|+|++|+
T Consensus 284 ~~~~~~~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 284 KSVDIKGGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HTSCCCBST----TCCSSSBTTTBTCBCCC
T ss_pred ccCCCCCCc----CCccCCCcccCCCEecC
Confidence 988654321 12345677889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=8.8e-43 Score=366.51 Aligned_cols=242 Identities=29% Similarity=0.381 Sum_probs=195.3
Q ss_pred CccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccccc
Q 048642 137 SAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVN 216 (782)
Q Consensus 137 ~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (782)
..|-...+|+||+|||||||||++||+|.++ +...+.
T Consensus 22 ~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~--------------------------~~~~~~----------------- 58 (279)
T d2pwaa1 22 TYYYDESAGQGSCVYVIDTGIEASHPEFEGR--------------------------AQMVKT----------------- 58 (279)
T ss_dssp CEECCTTTTTTEEEEEEESCCCTTCGGGTTC--------------------------EEEEEE-----------------
T ss_pred cceecCCCCCCeEEEEECcCCCCCChhhcCC--------------------------ceeccC-----------------
Confidence 3333455999999999999999999999754 111111
Q ss_pred CCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC----
Q 048642 217 FNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD---- 292 (782)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~---- 292 (782)
....+.|.+||||||||||+|.. .|+||+|+|+.+|++... .....+.+..+++++...
T Consensus 59 ~~~~~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~ 121 (279)
T d2pwaa1 59 YYYSSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDN---GSGQYSTIIAGMDFVASDKNNR 121 (279)
T ss_dssp SSSCSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTT---SCCCHHHHHHHHHHHHHHGGGS
T ss_pred CCCCcccccCccccccccccccc--------------cccCCCccccceeeecCC---cccccccccchhheeccccccc
Confidence 12245678899999999999874 689999999999998876 356788899999988764
Q ss_pred ---CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc-ccCCCCcEEEEccccCCccceeeEEecC
Q 048642 293 ---GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT-VTNVSPWIITVGASTLDREFQNFVELRN 368 (782)
Q Consensus 293 ---g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgas~~~~~~~~~~~~~~ 368 (782)
+++|+|+|||.. ..+.+..++.++.++|+++|+||||++..... .+...|++|+|||++.
T Consensus 122 ~~~~~~i~n~s~g~~----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~------------ 185 (279)
T d2pwaa1 122 NCPKGVVASLSLGGG----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------------ 185 (279)
T ss_dssp CCTTEEEEEECCCEE----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------------
T ss_pred ccccccceeccCCCc----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee------------
Confidence 456999999976 34566777788899999999999999865433 3446789999998542
Q ss_pred CeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEE
Q 048642 369 GQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448 (782)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 448 (782)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeE
Q 048642 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDI 528 (782)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (782)
.+.++.||++||.. ||
T Consensus 186 --------------------------------------------------------~g~~~~~S~~G~~~--------dv 201 (279)
T d2pwaa1 186 --------------------------------------------------------YDRRSSFSNYGSVL--------DI 201 (279)
T ss_dssp --------------------------------------------------------TSBBCTTCCBSTTC--------CE
T ss_pred --------------------------------------------------------cCCCccccCCCCcc--------cc
Confidence 24788999999976 99
Q ss_pred EeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCC
Q 048642 529 TAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMR 608 (782)
Q Consensus 529 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~ 608 (782)
+|||.+|+++++.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++..
T Consensus 202 ~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~------- 260 (279)
T d2pwaa1 202 FGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD------- 260 (279)
T ss_dssp EEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-------
T ss_pred ccccccccccccCC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-------
Confidence 99999999999875 899999999999999999999999999999887775 677887532
Q ss_pred CCCCCCCCCCcccccccCc
Q 048642 609 DGSFKKATPFSYGSGHIRP 627 (782)
Q Consensus 609 ~~~~~~~~~~~~G~G~vd~ 627 (782)
....|+|++|+
T Consensus 261 --------~~~~g~g~~n~ 271 (279)
T d2pwaa1 261 --------LSNIPFGTVNL 271 (279)
T ss_dssp --------CBSCCTTSCCE
T ss_pred --------CCCCCCCChhh
Confidence 34679999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.5e-41 Score=362.31 Aligned_cols=299 Identities=26% Similarity=0.321 Sum_probs=220.3
Q ss_pred CCcccc-CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 136 SSAWGK-GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 136 ~~~w~~-~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+.+|.. |++|+||+|||||||||++||+|.... .| ..++...+.+.
T Consensus 11 ~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~--------------~~~~~~~~~~~------------- 57 (318)
T d1wmda2 11 DVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF--------------RGKITALYALG------------- 57 (318)
T ss_dssp HHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT--------------TTCEEEEEETT-------------
T ss_pred hhHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc--------------CCcEEeecCCC-------------
Confidence 467775 999999999999999999999997530 01 11222222211
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..||||||||||+|+.. ...||||+|+|+.+|++...... ......+..+++++...++
T Consensus 58 --~~~~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~ 123 (318)
T d1wmda2 58 --RTNNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGL-GGLPSNLQTLFSQAYSAGA 123 (318)
T ss_dssp --TTTCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSC-TTSCSSHHHHHHHHHHTTC
T ss_pred --CCCCCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccc-cccchhhHHHHHHHHhcCC
Confidence 233566889999999999998731 23799999999999999866321 3456668899999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccC--CCCcEEEEccccCCccceeeEEecCCeEE
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN--VSPWIITVGASTLDREFQNFVELRNGQRF 372 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~--~~p~vitVgas~~~~~~~~~~~~~~~~~~ 372 (782)
+|+|+|||.............+...+.+.++++|+|+||.|........ ..+.++++.+.........
T Consensus 124 ~i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------- 193 (318)
T d1wmda2 124 RIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFG---------- 193 (318)
T ss_dssp SEEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGC----------
T ss_pred ceeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccccc----------
Confidence 9999999988544455556666667789999999999999977655443 3567777766432211000
Q ss_pred eeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEecc
Q 048642 373 KGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCND 452 (782)
Q Consensus 373 ~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 452 (782)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCC
Q 048642 453 KSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPG 532 (782)
Q Consensus 453 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG 532 (782)
........+..||++||.. ....|||+.|||
T Consensus 194 -----------------------------------------------~~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G 224 (318)
T d1wmda2 194 -----------------------------------------------SYADNINHVAQFSSRGPTK--DGRIKPDVMAPG 224 (318)
T ss_dssp -----------------------------------------------GGGSCTTSBCTTSCCCCCT--TSCCCCCEEEEC
T ss_pred -----------------------------------------------cccccccccccccccCCCc--CCCcccceeecC
Confidence 0001124677899999986 678999999999
Q ss_pred ceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-----CCCCHHHHHHHHHhccccccCCCCCC
Q 048642 533 VNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH-----PDWSPSAIRSAIMTTARTRDNTANPM 607 (782)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p~~sp~~ik~~L~~TA~~~~~~g~~~ 607 (782)
.+|+++.......... .......|..++|||||||+|||++|||+|++ +.++|.+||++|++||+++..
T Consensus 225 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~----- 298 (318)
T d1wmda2 225 TFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL----- 298 (318)
T ss_dssp SSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-----
T ss_pred ceEEeccccccccCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC-----
Confidence 9999988764322111 11123468889999999999999999999975 468899999999999998743
Q ss_pred CCCCCCCCCCCcccccccCccccCC
Q 048642 608 RDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 608 ~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
..++..||||+||+.+||+
T Consensus 299 ------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 ------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp ------CSSCTTTTTCBCCHHHHHT
T ss_pred ------CCCCCCeeeceecHHHHhC
Confidence 3356789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.2e-39 Score=348.14 Aligned_cols=286 Identities=16% Similarity=0.196 Sum_probs=195.0
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
++..+|..+.+|+||+|||||||||++||+|.++ +.....|... ... ...
T Consensus 25 n~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~--------------------------~~~~~~~~~~--~~~--~~~ 74 (334)
T d1p8ja2 25 NVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGN--------------------------YDPGASFDVN--DQD--PDP 74 (334)
T ss_dssp CCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG--------------------------BCGGGCEETT--TTB--SCC
T ss_pred CHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhc--------------------------cccCCCcccc--CCC--Ccc
Confidence 3668999999999999999999999999999753 1111122100 000 000
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-C
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-D 292 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~ 292 (782)
. ......|..+|||||||||+|...+ +....|+||+++++.+|++. ......+.++.++++ +
T Consensus 75 ~--~~~~~~~~~gHGT~vAgiia~~~~n--------~~~~~g~a~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 137 (334)
T d1p8ja2 75 Q--PRYTQMNDNRHGTRCAGEVAAVANN--------GVCGVGVAYNARIGGVRMLD-------GEVTDAVEARSLGLNPN 137 (334)
T ss_dssp C--CCCCTTCTTCHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECSS-------SCCCHHHHHHHHTSCTT
T ss_pred c--cccccccCccchhhhhhhhhhcccc--------ccccccccccccccchhhcc-------ccccchHHHHHHHhhhc
Confidence 0 1234557899999999999998532 22347899999999999975 344566778888775 6
Q ss_pred CCeEEEEccCCCC-CCCCCCH--------HHHHHHHHHhcCcEEEEecCCCCCCCCcccC----CCCcEEEEccccCCcc
Q 048642 293 GVDVISVSLGGDP-ADYFNDG--------TAIGAFHAVKHGIVVVCSAANSGPELGTVTN----VSPWIITVGASTLDRE 359 (782)
Q Consensus 293 g~dVIn~SlG~~~-~~~~~~~--------~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~----~~p~vitVgas~~~~~ 359 (782)
+++++|+|||... ......+ +..+...+..+|+++|+||||++........ ..+.+++|++++.
T Consensus 138 ~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~--- 214 (334)
T d1p8ja2 138 HIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ--- 214 (334)
T ss_dssp TCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---
T ss_pred CCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc---
Confidence 8999999999862 1111111 2223334567999999999998755432222 2345666665332
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
.+..+.||++|+..
T Consensus 215 -----------------------------------------------------------------~g~~~~~s~~~~~~- 228 (334)
T d1p8ja2 215 -----------------------------------------------------------------FGNVPWYSEACSST- 228 (334)
T ss_dssp -----------------------------------------------------------------TSCCCTTCCBCTTC-
T ss_pred -----------------------------------------------------------------CCceeeecccCCcc-
Confidence 13455666666554
Q ss_pred CCCCcCCeEEeCCc-----eEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 048642 520 TPEILKPDITAPGV-----NIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIM 594 (782)
Q Consensus 520 ~~~~~KPDI~APG~-----~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~ 594 (782)
..+..+||. .+.+... ...|..++|||||||+|||++|||+|++|+|++.|||++|+
T Consensus 229 -----~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~ 290 (334)
T d1p8ja2 229 -----LATTYSSGNQNEKQIVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVV 290 (334)
T ss_dssp -----CEEEECCCSTTSCCEEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred -----ccccccccccccccccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 123344442 2333322 23788999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCCCCCCCCCCcccccccCccccCCC
Q 048642 595 TTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 595 ~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
+||.+.......+.........+..||+|+||+++||+.
T Consensus 291 ~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 291 QTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp HHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHHH
Confidence 999987655433333323334566899999999999973
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.9e-39 Score=346.89 Aligned_cols=287 Identities=20% Similarity=0.197 Sum_probs=203.7
Q ss_pred cCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 134 HSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 134 ~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
++..+|..+++|+||+|||||||||++||+|+++- + ..+.++|.+.. +
T Consensus 34 n~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~-------~-----------------~~~~~~~~~~~-------~- 81 (339)
T d2id4a2 34 NVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C-----------------AEGSWDFNDNT-------N- 81 (339)
T ss_dssp CCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C-----------------GGGCEETTTTB-------S-
T ss_pred CHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCc-------c-----------------cccccccccCC-------C-
Confidence 46789999999999999999999999999998641 0 00112222110 0
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCC
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDG 293 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g 293 (782)
......+..+|||||||+|+|.... +....||||+|+|+.++++.. ......+..++.++++.
T Consensus 82 ---~~~~~~~~~~HGT~vag~iaa~~~~--------~~~~~Gvap~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 144 (339)
T d2id4a2 82 ---LPKPRLSDDYHGTRCAGEIAAKKGN--------NFCGVGVGYNAKISGIRILSG-----DITTEDEAASLIYGLDV- 144 (339)
T ss_dssp ---CCCCCSTTTTHHHHHHHHHHCCSSS--------SSSCCCTTTTSEEEEEECTTS-----CCCHHHHHHHTTTTTTT-
T ss_pred ---ccCCCcccccccceeeecccccccc--------cccccccccccccceEEEeec-----cccchHHHHHHHHHHhh-
Confidence 2234556789999999999987532 233589999999999999763 46777888888887765
Q ss_pred CeEEEEccCCCCC-CC---CCCH-----HHHHHHHHHhcCcEEEEecCCCCCCCCcccC----CCCcEEEEccccCCccc
Q 048642 294 VDVISVSLGGDPA-DY---FNDG-----TAIGAFHAVKHGIVVVCSAANSGPELGTVTN----VSPWIITVGASTLDREF 360 (782)
Q Consensus 294 ~dVIn~SlG~~~~-~~---~~~~-----~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~----~~p~vitVgas~~~~~~ 360 (782)
.+|+|+|||.... .. .... ...+...+..+|+++|+||||.+........ ..+.+++|++++.
T Consensus 145 ~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 220 (339)
T d2id4a2 145 NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH---- 220 (339)
T ss_dssp CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT----
T ss_pred CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc----
Confidence 4999999997621 11 1111 2223334557999999999998754322211 2344555554221
Q ss_pred eeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHH
Q 048642 361 QNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAA 440 (782)
Q Consensus 361 ~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~ 440 (782)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCC
Q 048642 441 VAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKIT 520 (782)
Q Consensus 441 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~ 520 (782)
.+..+.||++|+..
T Consensus 221 ----------------------------------------------------------------~g~~~~~s~~~~~~-- 234 (339)
T d2id4a2 221 ----------------------------------------------------------------KDLHPPYSEGCSAV-- 234 (339)
T ss_dssp ----------------------------------------------------------------TSCCCTTCCCCTTE--
T ss_pred ----------------------------------------------------------------cccccccccccCcc--
Confidence 23556777777643
Q ss_pred CCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 048642 521 PEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 521 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 600 (782)
...++..+||..|.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||.++
T Consensus 235 --~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~ 300 (339)
T d2id4a2 235 --MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGL 300 (339)
T ss_dssp --EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCC
T ss_pred --ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCccc
Confidence 34567888999998876543 2688999999999999999999999999999999999999999987
Q ss_pred cCCCCC-CCCCCCCCCCCCcccccccCccccCCC
Q 048642 601 DNTANP-MRDGSFKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 601 ~~~g~~-~~~~~~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
+..... +.+.......+..||||+||+.+||+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 301 EKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp TTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred CCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 543321 111222344567799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.1e-31 Score=291.15 Aligned_cols=313 Identities=15% Similarity=0.132 Sum_probs=184.1
Q ss_pred ccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCC
Q 048642 140 GKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNN 219 (782)
Q Consensus 140 ~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 219 (782)
..+++|+||+|||||||||++||+|.+. | ..+.... ...
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~-------------------------~~~~~~~--------~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------F-------------------------ASLGVSA--------PQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------H-------------------------HHTTCCC--------CCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------H-------------------------hhcCCCC--------CCC
Confidence 4688999999999999999999999631 0 0000000 011
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHh---hhCCCeE
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMA---IHDGVDV 296 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a---~~~g~dV 296 (782)
.+.+..+|+|||++++++..... ..+...+.||||+|+|+.+|++... ..++.+|+++ .+++++|
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~V 124 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNTD--------AGFLNAITTAVHDPTHKPSI 124 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSSH--------HHHHHHHHHHHHCTTTCCSE
T ss_pred ceeCCCCCCCCCCCccccccccc----cCCcccceeecccCeEEEEecccCC--------CchHHHHHHHHHhhhcCCeE
Confidence 23356788888888877653110 0112346899999999999997543 2344445554 4569999
Q ss_pred EEEccCCCCCCC---CCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc--------ccCCCCcEEEEccccCCccceeeEE
Q 048642 297 ISVSLGGDPADY---FNDGTAIGAFHAVKHGIVVVCSAANSGPELGT--------VTNVSPWIITVGASTLDREFQNFVE 365 (782)
Q Consensus 297 In~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgas~~~~~~~~~~~ 365 (782)
||+|||...... ....+......+..+|+++|+|+||+|..... .....+++++|++...........
T Consensus 125 in~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 203 (357)
T d1t1ga_ 125 VSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRIE- 203 (357)
T ss_dssp EEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCEE-
T ss_pred EecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCCccc-
Confidence 999999863211 12335556667779999999999999854322 222457888888754321100000
Q ss_pred ecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCce
Q 048642 366 LRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAV 445 (782)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 445 (782)
..+.... .... .... +
T Consensus 204 --------~~~~~~~------~~~~----------------~~~~--------------------------------~-- 219 (357)
T d1t1ga_ 204 --------RETVWND------GPDG----------------GSTG--------------------------------G-- 219 (357)
T ss_dssp --------EEEECBC------HHHH----------------CBCC--------------------------------C--
T ss_pred --------cceeccc------cccc----------------cccc--------------------------------C--
Confidence 0000000 0000 0000 0
Q ss_pred EEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcC
Q 048642 446 GMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILK 525 (782)
Q Consensus 446 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~K 525 (782)
+ +.... ............+++.+++. .++.|
T Consensus 220 g----------------------------------------------~s~~~-~~p~~~~~~~~~~~~~~~~~--~~~~~ 250 (357)
T d1t1ga_ 220 G----------------------------------------------VSRIF-PLPSWQERANVPPSANPGAG--SGRGV 250 (357)
T ss_dssp E----------------------------------------------ECSSS-CCCGGGTTSCCCCCSSTTCC--CCCEE
T ss_pred C----------------------------------------------ccccc-ccCcccccccccccccCCCC--CCcee
Confidence 0 00000 00001124566777888776 89999
Q ss_pred CeEEeCCceE--EEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC---CCHHHHHHHHHhccccc
Q 048642 526 PDITAPGVNI--IAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD---WSPSAIRSAIMTTARTR 600 (782)
Q Consensus 526 PDI~APG~~I--~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---~sp~~ik~~L~~TA~~~ 600 (782)
||+.+++... .++...+ .|..++|||||||||||++|||+|+++. +...+++++...+.+++
T Consensus 251 pd~~~~~~~~~~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~di 317 (357)
T d1t1ga_ 251 PDVAGNADPATGYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDI 317 (357)
T ss_dssp CSEEEECCTTEEEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECC
T ss_pred cceecccCCCCceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecc
Confidence 9999986654 4444433 8999999999999999999999998643 23334444333333332
Q ss_pred cCCCCCCCC----CCCCCCCCCcccccccCccccCC
Q 048642 601 DNTANPMRD----GSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 601 ~~~g~~~~~----~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
......... ....+.++..+|||++|+.++++
T Consensus 318 t~g~~~~~~~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 318 TEGNNDIANRARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp CSCBCCCSSSSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred cccCCCCCCCCCcccCccCCCCCccCchhhHHHHHH
Confidence 111000000 01234567789999999988775
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=1.8e-29 Score=275.15 Aligned_cols=123 Identities=20% Similarity=0.137 Sum_probs=94.6
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-CCCeEEEE
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-DGVDVISV 299 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~g~dVIn~ 299 (782)
..+..+||||+++++.+.. +...+.||||+|+|+.+|++.+. +.....+++++|++|++ ++++|||+
T Consensus 64 ~~~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~~Vis~ 131 (369)
T d1ga6a_ 64 GSSNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMADQ---SASGNTGLTQAFNQAVSDNVAKVINV 131 (369)
T ss_dssp SCTTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEECT---TSSTTHHHHHHHHHHHHHCCCSEEEE
T ss_pred CCCCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeCCC---CCcchHHHHHHHHHHHHcCCCceeec
Confidence 3456789999999988763 22345899999999999998876 46778899999999996 57999999
Q ss_pred ccCCCC----CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc-------------ccCCCCcEEEEcccc
Q 048642 300 SLGGDP----ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT-------------VTNVSPWIITVGAST 355 (782)
Q Consensus 300 SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-------------~~~~~p~vitVgas~ 355 (782)
|||... .....+.+..++.++.++|++||+||||+|..... .+...+++++|+++.
T Consensus 132 S~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 132 SLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp CCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 999862 22334556667778889999999999999854221 223458899999754
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=1.1e-08 Score=80.86 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=55.9
Q ss_pred CeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEEEEe
Q 048642 31 QSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVSIFP 110 (782)
Q Consensus 31 ~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~V~~ 110 (782)
++|||.||++... .....+.++++. ...++.+.|+ .||||++++++++++.|+++|+|.+||+
T Consensus 2 ~~YIV~fK~~~~~---------~~~~~~~~~v~~-------~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~ 64 (71)
T d1scjb_ 2 KKYIVGFKQTMSA---------MSSAKKKDVISQ-------KGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEE 64 (71)
T ss_dssp EEEEEEECSSSSC---------CSHHHHHHHHHT-------TTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEE
T ss_pred CcEEEEECCCCCh---------HHHHHHHHHHHH-------cCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeC
Confidence 6899999998764 333444444443 2357999998 7999999999999999999999999999
Q ss_pred cccccc
Q 048642 111 NKGKKL 116 (782)
Q Consensus 111 ~~~~~~ 116 (782)
|+.++.
T Consensus 65 D~v~~a 70 (71)
T d1scjb_ 65 DHIAHE 70 (71)
T ss_dssp CCEEEE
T ss_pred CcEEEc
Confidence 988764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.56 E-value=8e-08 Score=76.03 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=52.3
Q ss_pred CCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCcccccccEeEEec-cceeeEEEEcCHHHHHHHhCCCC--eE
Q 048642 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKARDAIFYSYQ-NHINGFAATLEEEEAAEIAKHPD--VV 106 (782)
Q Consensus 30 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~p~--V~ 106 (782)
.++|||.||+.... .....+..++... ...+.+.|. +.|+||+++++++.++.|+++|+ |.
T Consensus 2 aG~YIVvlK~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~ 65 (72)
T d1v5ib1 2 AGKFIVIFKNDVSE---------DKIRETKDEVIAE-------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLID 65 (72)
T ss_dssp CEEEEEEECTTCCH---------HHHHHHHHHHHHH-------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEE
T ss_pred CccEEEEECCCCCH---------HHHHHHHHHHHhc-------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCc
Confidence 37899999997763 4445565565543 245677777 68999999999999999998665 99
Q ss_pred EEEecc
Q 048642 107 SIFPNK 112 (782)
Q Consensus 107 ~V~~~~ 112 (782)
+||+|.
T Consensus 66 yVE~D~ 71 (72)
T d1v5ib1 66 SIEEDH 71 (72)
T ss_dssp EEEECC
T ss_pred eECCCC
Confidence 999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00087 Score=62.18 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=55.4
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc-------------cccC-------------------
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE-------------ITAD------------------- 462 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-------------~~~~------------------- 462 (782)
..+++|||+|+++|.+.+.+|..+|+..||.|+|+|.+...... ..++
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 46899999999999999999999999999999999986432100 0000
Q ss_pred --CCcccEEEEehhhHHHHHHHHh
Q 048642 463 --PHFLPASQITYKDGVKVLDYIK 484 (782)
Q Consensus 463 --~~~~p~~~i~~~~g~~l~~~~~ 484 (782)
-..||+.-|+..+++.|+..++
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 1248999999999999998664
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.55 E-value=0.017 Score=47.83 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=64.4
Q ss_pred CCCCcEEeeccCceEEEEEEEEecCC-C-CeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEE
Q 048642 677 FNYPSISVPMISGSVTLSRKLKNVGS-P-SNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFG 754 (782)
Q Consensus 677 ~n~ps~~~~~~~~~~t~~~tv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G 754 (782)
+..|++.+.- +...+++++|+|.|+ . ..-++.++.|.|=+++ +....+ ++|++++++++++++.....+.|..
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~i- 80 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYRV- 80 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEEE-
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEEE-
Confidence 4557776654 368999999999998 4 3457888899986664 555555 7899999999999876455565643
Q ss_pred EEEEEcCCcEEEEEEEEEEc
Q 048642 755 ELTWTDGKHYVRSPIVVNQA 774 (782)
Q Consensus 755 ~i~~~~~~~~v~~P~~~~~~ 774 (782)
.+..+.+.......+-+.++
T Consensus 81 ~~~a~~~~~~~s~t~tvtV~ 100 (103)
T d1w8oa1 81 GATLRTSAGNASTTFTVTVG 100 (103)
T ss_dssp EEEEEETTEEEEEEEEEEES
T ss_pred EEEEEeCCcceEEEEEEEEE
Confidence 35555555555555555443
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0076 Score=57.46 Aligned_cols=39 Identities=36% Similarity=0.514 Sum_probs=36.7
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccC
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDK 453 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 453 (782)
..+++|||+|+++|.+.+.+|..+|+..||.|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 468999999999999999999999999999999999874
|