Citrus Sinensis ID: 048649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEEHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccHEEEEEEc
Coil and Loop (DISEMBL)
MIGWEDVYKVVEAMVPLYFALMLGYgsvkwwkiiapeecaavNRFVCyftlplftiefttqvdpfnlnyrligADAISKLIIVFVLAFWAMCsknescyswcITNFslctltnslvvgvpllkpmygqMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARidleeghgrpsfWHLMKIVwpkmaknpnsYACILGLAWAFVAHRwhlkmpsiiEGSILIMSRAGTGTAMFSMGIFMALQEKLIacgpkltvfgmvl
Flexible Loop (DISEMBL)
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIdleeghgrpsFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Low Complexity Region (SEG)
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDlvvqssvlqsILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Disordered region (IsUnstruct)
**GWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGM**
Disordered Region (DISOPRED)
**GWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA**************HLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Disordered Region (DISEMBL)
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Disordered Region (DISPRO)
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9FFD0	351	Putative auxin efflux car	yes	no	0.996	0.726	0.653	1e-100
Q5JLM1	363	Probable auxin efflux car	yes	no	1.0	0.705	0.533	3e-80
Q6ZIB5	370	Probable auxin efflux car	no	no	1.0	0.691	0.467	3e-68
Q9LFP6	367	Putative auxin efflux car	no	no	1.0	0.697	0.353	6e-44
Q8RWZ6	616	Auxin efflux carrier comp	no	no	0.640	0.266	0.484	3e-42
Q67UL3	592	Probable auxin efflux car	no	no	0.636	0.275	0.490	2e-40
Q9C6B8	622	Auxin efflux carrier comp	no	no	0.605	0.249	0.5	9e-40
Q651V6	630	Probable auxin efflux car	no	no	0.644	0.261	0.441	2e-39
Q940Y5	619	Auxin efflux carrier comp	no	no	0.640	0.264	0.460	3e-39
Q5SMQ9	595	Auxin efflux carrier comp	no	no	0.636	0.273	0.478	3e-39

>sp|Q9FFD0|PIN8_ARATH Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/274 (65%), Positives = 210/274 (76%), Gaps = 19/274 (6%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   DVYKV+EAMVPLY AL+LGYGSVKWW I   ++C A+NR VCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPFN+NYR I AD +SK+IIV VLA WA  S N+  Y W IT+FSLCTLTNSLVVGVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYS-NKGSYCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA------------RIDLEEGH- 167
           L K MYGQ AVDLVVQSSV Q+I+WLT+ LFVLE+R++              I++E G  
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 168 -----GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSR 222
                G  SF  +M +VW K+A NPN Y+CILG+AWAF+++RWHL++P I+EGSILIMS+
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 223 AGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           AGTGTAMF+MGIFMALQEKLI CG  LTV GMVL
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVL 273

May act as a transmembrane component of the auxin efflux carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLM1|PIN6_ORYSJ Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1

 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 152/285 (53%), Positives = 188/285 (65%), Gaps = 29/285 (10%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGW DVYKVV A VPLYFAL LGYGSV+WW+I   E+C AVNR V +F LP FT EFT 
Sbjct: 1   MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTL 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWA-MCSKNESCYSWCITNFSLCTLTNSLVVGV 119
             DPF +NYR + AD ISK +IV V+  WA   SK     SW IT+FSL TLTNSLVVGV
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGV 120

Query: 120 PLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA--------------RIDLEE 165
           P+ + MYG+ A  LVVQ SV Q+I+WLT+ LFVLE R++A                D+E 
Sbjct: 121 PMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAAIGMYVDGAEAAAAAGKDVEA 180

Query: 166 GHG--------------RPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPS 211
                            +PS W L+K+V  K+A+NPN+YA  +G+ WA +A+R H+ +PS
Sbjct: 181 AGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHIALPS 240

Query: 212 IIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
             EGS+LIMS++GTG AMFSMG+FMA QEK+IACG      G+VL
Sbjct: 241 AFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVL 285

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIB5|PIN4_ORYSJ Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1

 Score =  258 bits (659), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 137/293 (46%), Positives = 177/293 (60%), Gaps = 37/293 (12%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGW DVYKVV AM PLYFAL LGYGSV+WW+    E+CAA+N  V YF++P FT +F  
Sbjct: 1   MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVV 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCY-----SWCITNFSLCTLTNSL 115
           + DPF +NYR+I ADA+SK I +  +A WA      +       SW IT FSL  L N+L
Sbjct: 61  RTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTL 120

Query: 116 VVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRS----------------- 158
           VVGVPLL  MYG+ A DLVVQ +V+QS++W  + L   E R++                 
Sbjct: 121 VVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSS 180

Query: 159 ----ARIDLEEG-----------HGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAH 203
                + D+E               R  FW   + V  K+A+NPN YA +LG+ WA +A+
Sbjct: 181 SPPEKQSDVEMNGAVVAAPGGGGGVRLPFWATARTVGLKLARNPNVYASVLGVVWACIAY 240

Query: 204 RWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           RWHL +P I+ GS+ +MSR GTG +MFSMG+FM  QE++IACG  LT  GM L
Sbjct: 241 RWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMAL 293

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LFP6|PIN5_ARATH Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/291 (35%), Positives = 160/291 (54%), Gaps = 35/291 (12%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI W D+Y VV A VPLY ++ LG+ S +  K+ +PE+CA +N+FV  F++PL + +  +
Sbjct: 1   MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLA----FWAMCSKNESCYSWCITNFSLCTLTNSLV 116
           + +PF ++ +LI +D + K ++V VLA    FW           W IT  S+  L N+L+
Sbjct: 61  ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query: 117 VGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARI------------DLE 164
           +G+P+L  +YG  A  ++ Q  VLQS++W TI LF+ E   +  +            D E
Sbjct: 121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQE 180

Query: 165 EGH----------------GRPSFWHLMKIV---WPKMAKNPNSYACILGLAWAFVAHRW 205
           E +                 R      MKI+   W K+  NPN+YA ++G+ WA +  R 
Sbjct: 181 EANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRL 240

Query: 206 HLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
              +P +I+ SI ++S  G G AMFS+G+FMA Q  +IACG K+ +  M+L
Sbjct: 241 GWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLL 291

May act as a component of the auxin efflux carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 115/165 (69%), Gaps = 1/165 (0%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A+VPLY A++L YGSV+WWKI +P++C+ +NRFV  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             DP+ +N+R + AD + K+I++ +LA WA  +KN S   W IT FSL TL N+LV+G+P
Sbjct: 61  TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSL-EWMITIFSLSTLPNTLVMGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165
           LL  MYG  A  L+VQ  VLQ I+W T+ LF+ EYR +  + +E+
Sbjct: 120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQ 164

Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 111/165 (67%), Gaps = 2/165 (1%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ +NRFV  F +PL +  F +
Sbjct: 1   MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             +P+ +N R I AD + KLI++ +L  W+  S+  S   W IT FSL TL N+LV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSL-EWTITLFSLSTLPNTLVMGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165
           LLK MYG+ +  L+VQ  VLQ I+W T+ LF+ EY R ARI + E
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEY-RGARILITE 163

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1

 Score =  163 bits (413), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A++L YGSVKWWKI  P++C+ +NRFV  F +PL +  F  
Sbjct: 1   MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             +P+ +N R + AD++ K+I++ +L  W   S+N S   W IT FSL TL N+LV+G+P
Sbjct: 61  ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGSL-DWTITLFSLSTLPNTLVMGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYR 156
           LLK MYG  + DL+VQ  VLQ I+W T+ LF+ EYR
Sbjct: 120 LLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYR 155

Acts as a component of the auxin efflux carrier. Seems to be involved in the basipetal auxin transport. Mediates the formation of auxin gradient which is required to ensure correct organogenesis. Coordinated polar localization of PIN1 is directly regulated by the vesicle trafficking process and apical-basal PIN1 polarity also depends on the phosphorylation of conserved serine residues by PID kinase. The ARF-GEF protein GNOM is required for the correct recycling of PIN1 between the plasma membrane and endosomal compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q651V6|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 7/172 (4%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   D+Y V+ A+VPLY A+ L YGSV+WW I  P++C+ +NRFV  F +PL +  F +
Sbjct: 1   MITGRDIYDVLAAIVPLYVAMFLAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFW----AMCSKN---ESCYSWCITNFSLCTLTN 113
             DP+++NYR + AD++ KL+I+  LA W    +   +N    +   W IT FSL TL N
Sbjct: 61  TNDPYSMNYRFLAADSLQKLVILAALAVWHNLLSRYRRNGGAAASLDWTITLFSLSTLPN 120

Query: 114 SLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165
           +LV+G+PLL+ MYG  +  L+VQ  VLQS++W T+ LF+ EYR +  +  E+
Sbjct: 121 TLVMGIPLLRAMYGDFSGSLMVQIVVLQSVIWYTLMLFLFEYRGAKALISEQ 172

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 114/165 (69%), Gaps = 1/165 (0%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ +NRFV  F +PL +  F +
Sbjct: 1   MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             +P+ +N R I AD + KLI++ +L  WA  +++ S   W IT FSL TL N+LV+G+P
Sbjct: 61  SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGSL-EWSITIFSLSTLPNTLVMGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165
           LL  MYG+ +  L+VQ  VLQ I+W T+ LF+ EYR +  + +E+
Sbjct: 120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQ 164

Acts as a component of the auxin efflux carrier. Mediates the initial auxin gradient which contributes to the establishment of the apical-basal axis in early embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 111/165 (67%), Gaps = 2/165 (1%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ +NRFV  F +PL +  F +
Sbjct: 1   MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             +P+ +N R I AD + KL+++ +L  W+  S+  S   W IT FSL TL N+LV+G+P
Sbjct: 61  TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSL-EWTITLFSLSTLPNTLVMGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165
           LLK MYG+ +  L+VQ  VLQ I+W T+ LF+ EY R AR+ + E
Sbjct: 120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEY-RGARMLITE 163

Acts as a component of the auxin efflux carrier. Seems to be involved in the polar auxin transport which may promote adventitious root emergence and control tillering.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
225431003	356	PREDICTED: putative auxin efflux carrier	0.996	0.716	0.670	1e-102
255543120	357	conserved hypothetical protein [Ricinus	0.992	0.711	0.676	1e-101
224128940	346	auxin efflux carrier component [Populus	0.996	0.736	0.687	1e-101
224144932	346	auxin efflux carrier component [Populus	0.996	0.736	0.695	1e-100
240256298	351	putative auxin efflux carrier component	0.996	0.726	0.653	5e-98
449470249	371	PREDICTED: putative auxin efflux carrier	0.992	0.684	0.636	7e-98
449477700	371	PREDICTED: putative auxin efflux carrier	0.992	0.684	0.632	2e-97
357507711	363	Auxin Efflux Carrier [Medicago truncatul	0.996	0.702	0.604	1e-96
297807677	352	hypothetical protein ARALYDRAFT_326097 [	0.996	0.724	0.650	4e-92
356568479	369	PREDICTED: putative auxin efflux carrier	0.996	0.691	0.558	9e-85

>gi|225431003|ref|XP_002279191.1| PREDICTED: putative auxin efflux carrier component 8 [Vitis vinifera] gi|297735290|emb|CBI17652.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/279 (67%), Positives = 217/279 (77%), Gaps = 24/279 (8%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGWEDVYKVV AM+PLY AL+LGYGSVKWW+I  P++C A+NR VCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMLPLYVALVLGYGSVKWWRIFTPDQCDAINRLVCYFTLPLFTFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPF +NY  IGADA+SKLIIV VLA WA CS   S Y W IT+FSL TLTNSLVVGVP
Sbjct: 61  HVDPFKMNYLFIGADAVSKLIIVLVLALWAKCSSKGS-YCWSITSFSLATLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRR-------------SARIDLEEGH 167
           L+K MYG + VDLVVQSSV+Q+I+WLT+ LFVLE+RR             S  I++E G 
Sbjct: 120 LIKAMYGPLGVDLVVQSSVVQAIIWLTLLLFVLEFRRTGTGISSNTTMGDSGVIEVEPGK 179

Query: 168 G----------RPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSI 217
                      R SFW LM+ VW K+A+NPNSYACI+G+ WAF+A+RWH +MPSI+EGSI
Sbjct: 180 DLETNEMVVSTRLSFWSLMRKVWLKLAQNPNSYACIIGIVWAFIANRWHFEMPSIMEGSI 239

Query: 218 LIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           LIMSRAGTGTAMFSMG+FMA+QEK+IACG  LTVFGMVL
Sbjct: 240 LIMSRAGTGTAMFSMGLFMAMQEKIIACGTTLTVFGMVL 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543120|ref|XP_002512623.1| conserved hypothetical protein [Ricinus communis] gi|223548584|gb|EEF50075.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 216/281 (76%), Gaps = 27/281 (9%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+ AMVPLY AL+LGYGS++WWKI  PE+  AVNR VCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVIVAMVPLYVALLLGYGSIRWWKIFTPEQGGAVNRLVCYFTLPLFTFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPF +NY  IGADAISK IIV VLA WA  S   S Y+W IT+FSL TLTNSLVVGVP
Sbjct: 61  HVDPFKMNYLFIGADAISKFIIVVVLACWAKFSSKGS-YTWSITSFSLSTLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLE---------------E 165
           L+K MYG MAVDLVVQSSV+Q+I+WLTI LFVLE+RR+ R+D+                E
Sbjct: 120 LMKAMYGPMAVDLVVQSSVVQAIIWLTILLFVLEFRRT-RLDISSSNYNKNSDNLEKDLE 178

Query: 166 GHGR----------PSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEG 215
           G G           PSFW LMK+V  K+A NPNSYACILGL WAF+A+RWH +MPSI+EG
Sbjct: 179 GSGSAGNMAISSSGPSFWVLMKVVGVKLAMNPNSYACILGLVWAFIANRWHFEMPSIMEG 238

Query: 216 SILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           SILIMS+AGTGTAMFSMGIFMA+QEK+IACG  LTV GM+L
Sbjct: 239 SILIMSKAGTGTAMFSMGIFMAVQEKVIACGAGLTVVGMIL 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128940|ref|XP_002329004.1| auxin efflux carrier component [Populus trichocarpa] gi|222839238|gb|EEE77589.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/269 (68%), Positives = 218/269 (81%), Gaps = 14/269 (5%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGWEDVYKVV AMVPLY AL+LGYGSV+WWK+  PE+C A+NRFVCYFTLPLFT EFT 
Sbjct: 1   MIGWEDVYKVVVAMVPLYVALVLGYGSVRWWKVFTPEQCGAINRFVCYFTLPLFTFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPF +NYR IGADA+SK+IIV VLAFWA CS   S YSW IT+FSLCTLTNSLVVGVP
Sbjct: 61  HVDPFKMNYRFIGADAVSKVIIVVVLAFWAKCSSKGS-YSWSITSFSLCTLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRS--------ARIDLEEG-----H 167
           ++K MYG  AVDLVVQSSV+Q+I+WLT+ L VLE+RR+        +  DLE        
Sbjct: 120 IIKAMYGPAAVDLVVQSSVIQAIIWLTLLLLVLEFRRTGLGFSSNNSDKDLEGSVDNTES 179

Query: 168 GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGT 227
            RP+FW LM+ VW K+A NPNSYACI+GL WAF+++RWH +MP+++EGSILIMS+AGTGT
Sbjct: 180 SRPAFWCLMRTVWVKLAMNPNSYACIIGLVWAFISNRWHFEMPAMMEGSILIMSKAGTGT 239

Query: 228 AMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           AMFSMGIFMALQEK+I+CG  L V GM+L
Sbjct: 240 AMFSMGIFMALQEKVISCGASLAVIGMIL 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144932|ref|XP_002325466.1| auxin efflux carrier component [Populus trichocarpa] gi|222862341|gb|EEE99847.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/269 (69%), Positives = 208/269 (77%), Gaps = 14/269 (5%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGW D+YKVV AMVPLY ALMLGYGSV+WWK+  PE+C A+NRFVCYFTLP FT EFT 
Sbjct: 1   MIGWADIYKVVVAMVPLYVALMLGYGSVRWWKVFTPEQCGAINRFVCYFTLPFFTFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPF +NY  IGADAISKLIIV VLA WA  S   S Y W IT+FSLCTLTNSLV+GVP
Sbjct: 61  HVDPFKMNYLFIGADAISKLIIVVVLAVWAKWSGKGS-YGWSITSFSLCTLTNSLVLGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA--------RIDLEEG-----H 167
           L+K MYG  AVDLVVQSSV+QSI+WLT+ L VLE+RRS           DLE        
Sbjct: 120 LIKAMYGPTAVDLVVQSSVIQSIIWLTMLLLVLEFRRSGLGVSSSNPDKDLEGNADSTVS 179

Query: 168 GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGT 227
            RP+FW LMK V  K+A NPNSYACI+GL WAF+A RW  +MPSI+EGSILIMS+ GTGT
Sbjct: 180 SRPAFWCLMKTVGVKLAMNPNSYACIIGLVWAFIAKRWRFEMPSIMEGSILIMSKTGTGT 239

Query: 228 AMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           AMFSMGIFMALQEK+IACG  LTV GMVL
Sbjct: 240 AMFSMGIFMALQEKVIACGASLTVIGMVL 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256298|ref|NP_197157.4| putative auxin efflux carrier component 8 [Arabidopsis thaliana] gi|42558880|sp|Q9FFD0.2|PIN8_ARATH RecName: Full=Putative auxin efflux carrier component 8; Short=AtPIN8 gi|332004922|gb|AED92305.1| putative auxin efflux carrier component 8 [Arabidopsis thaliana]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 179/274 (65%), Positives = 210/274 (76%), Gaps = 19/274 (6%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   DVYKV+EAMVPLY AL+LGYGSVKWW I   ++C A+NR VCYFTLPLFTIEFT 
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPFN+NYR I AD +SK+IIV VLA WA  S N+  Y W IT+FSLCTLTNSLVVGVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYS-NKGSYCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA------------RIDLEEGH- 167
           L K MYGQ AVDLVVQSSV Q+I+WLT+ LFVLE+R++              I++E G  
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSSNNISDVQVDNINIESGKR 179

Query: 168 -----GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSR 222
                G  SF  +M +VW K+A NPN Y+CILG+AWAF+++RWHL++P I+EGSILIMS+
Sbjct: 180 ETVVVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSK 239

Query: 223 AGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           AGTGTAMF+MGIFMALQEKLI CG  LTV GMVL
Sbjct: 240 AGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVL 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470249|ref|XP_004152830.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  362 bits (929), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 215/294 (73%), Gaps = 40/294 (13%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGW+DVYKVV AM PLYFAL+LGYGSVKWWKI + ++C A+N+ VCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            +DPF+LN+  I ADAI KLIIV VLAFWA C+   S Y W IT+FSL TLTN+LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLAFWAKCTTKGS-YCWSITSFSLSTLTNALVIGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDL-----------EE---- 165
           L K MYGQMAVDLVVQ SV+Q+I+WLTI LFVLE RR+  +DL           EE    
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTG-LDLVAAEASSGVVSEEKTVE 178

Query: 166 --GHG---------------------RPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVA 202
             G G                     RPS   LMK VW KMA NPNSYAC +G AWAFVA
Sbjct: 179 VGGEGEKDLEGEGMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVA 238

Query: 203 HRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
            RWH++MPSI+EGSILIMS+AG GTAMF+MGIFMALQEKLIACGP LT+ GMVL
Sbjct: 239 KRWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVL 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477700|ref|XP_004155098.1| PREDICTED: putative auxin efflux carrier component 8-like [Cucumis sativus]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 186/294 (63%), Positives = 214/294 (72%), Gaps = 40/294 (13%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGW+DVYKVV AM PLYFAL+LGYGSVKWWKI + ++C A+N+ VCYFTLPLFT +FT+
Sbjct: 1   MIGWQDVYKVVAAMAPLYFALILGYGSVKWWKIFSTQQCDAINKLVCYFTLPLFTFDFTS 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            +DPF+LN+  I ADAI KLIIV VL FWA C+   S Y W IT+FSL TLTN+LV+GVP
Sbjct: 61  HIDPFHLNFPFIAADAIGKLIIVLVLTFWAKCTTKGS-YCWSITSFSLSTLTNALVIGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDL-----------EE---- 165
           L K MYGQMAVDLVVQ SV+Q+I+WLTI LFVLE RR+  +DL           EE    
Sbjct: 120 LAKVMYGQMAVDLVVQGSVVQAIVWLTILLFVLELRRTG-LDLVAAEASSGVVSEEKTVE 178

Query: 166 --GHG---------------------RPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVA 202
             G G                     RPS   LMK VW KMA NPNSYAC +G AWAFVA
Sbjct: 179 VGGEGEKDLEGEDMEVEEMRRSSKSHRPSLKPLMKKVWVKMAGNPNSYACTIGFAWAFVA 238

Query: 203 HRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
            RWH++MPSI+EGSILIMS+AG GTAMF+MGIFMALQEKLIACGP LT+ GMVL
Sbjct: 239 KRWHVEMPSIMEGSILIMSKAGIGTAMFNMGIFMALQEKLIACGPTLTIVGMVL 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507711|ref|XP_003624144.1| Auxin Efflux Carrier [Medicago truncatula] gi|49035698|gb|AAT48629.1| putative auxin efflux carrier protein 9 [Medicago truncatula] gi|87162565|gb|ABD28360.1| Auxin Efflux Carrier [Medicago truncatula] gi|355499159|gb|AES80362.1| Auxin Efflux Carrier [Medicago truncatula]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/286 (60%), Positives = 215/286 (75%), Gaps = 31/286 (10%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGWEDVYKV+ A+VPLYFAL+LGYGSV+WWKI   E+C A+N+ VCYFTLPLF  EFT 
Sbjct: 1   MIGWEDVYKVIVAVVPLYFALILGYGSVRWWKIFTREQCDAINKLVCYFTLPLFAFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            +DPF +N+  IGAD +SKLIIV V+A WA CS   S YSW IT+FSLCTLTNSLVVG+P
Sbjct: 61  HIDPFKMNFLFIGADTLSKLIIVAVIALWAKCSSKVS-YSWSITSFSLCTLTNSLVVGIP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA--------------------- 159
           ++KPMYG M VDLVVQ+SV+Q+I+WLT+ LFVLE+RR+                      
Sbjct: 120 MVKPMYGPMGVDLVVQASVVQAIIWLTLLLFVLEFRRTGIEGTITTLKPKASSISNVTCE 179

Query: 160 ---RIDLEEGH------GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMP 210
                D+E  +       R  F  LMK VW K+  NPNSY C++G++WAF+++RW+L++P
Sbjct: 180 GEESKDVEANNIVEYTSSRLPFLQLMKRVWLKLIANPNSYGCVIGISWAFISNRWNLELP 239

Query: 211 SIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           S++EGSILIMS+AGTGTAMFSMGIFMALQEK+I+CGP LTVFG+VL
Sbjct: 240 SMVEGSILIMSKAGTGTAMFSMGIFMALQEKVISCGPSLTVFGLVL 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807677|ref|XP_002871722.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata] gi|297317559|gb|EFH47981.1| hypothetical protein ARALYDRAFT_326097 [Arabidopsis lyrata subsp. lyrata]

 Score =  343 bits (880), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/275 (65%), Positives = 208/275 (75%), Gaps = 20/275 (7%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI   DVYKV+EAMVPLY AL+LGYGSVKWW I   ++C A+NR VCYFTLPLFTIEFT 
Sbjct: 1   MISCGDVYKVIEAMVPLYVALILGYGSVKWWNIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            VDPFN+NYR I AD +SK+IIV VLAFWA  S N+  Y W IT+FSLCTLTNSLVVGVP
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLAFWAKYS-NKGSYCWSITSFSLCTLTNSLVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSA------------RIDLEEGH- 167
           L K MYGQ AVDLVVQSSV Q+I+WLT+ LFVLE R++              I++E G  
Sbjct: 120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLELRKAGSSSNYSSDVKVDSINIENGKR 179

Query: 168 ------GRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMS 221
                    SF  +M +VW K+A NPN Y+CILG+AWA +++RWHL+MP I+EGSILIMS
Sbjct: 180 EIVVVGEEKSFLEVMSLVWLKLATNPNCYSCILGIAWALISNRWHLEMPGILEGSILIMS 239

Query: 222 RAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           +AGTGTAMF+MGIFMALQEKLI CG  LTV GMVL
Sbjct: 240 KAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVL 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568479|ref|XP_003552438.1| PREDICTED: putative auxin efflux carrier component 8-like [Glycine max]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 163/292 (55%), Positives = 206/292 (70%), Gaps = 37/292 (12%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MIGWEDVYKVV A+VPLYFAL+LGYGS+KWW I   E+C A+N+ VCYFTLPLF  EFT 
Sbjct: 1   MIGWEDVYKVVVAVVPLYFALLLGYGSLKWWNIFTKEQCEAINKLVCYFTLPLFIFEFTA 60

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
            +DPF +N+  I AD ISK II+ VLA WA C+  +  + W I +FSLC LTN++VVGVP
Sbjct: 61  HIDPFKMNFSFIAADTISKFIIMVVLALWAKCTP-KCTFCWSIISFSLCNLTNAVVVGVP 119

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEY---------------RRSARIDLEE 165
           ++KPMYG + VDLVVQSSVLQ+ +WL + LFV+E+               R    I+  E
Sbjct: 120 MVKPMYGALGVDLVVQSSVLQATIWLPLLLFVMEFWRTGIEGTTTTTVKPRSKTMINKNE 179

Query: 166 GHG---------------------RPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHR 204
           G G                     R  F  +MK+VW K+A NPNSY C++G++WAF+++R
Sbjct: 180 GGGGKDVEAVDVKEELMLEESVTSRLPFCKVMKLVWRKLATNPNSYGCVIGISWAFISNR 239

Query: 205 WHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           W+L+MPS++EGSI IMS+AGTGTAMFSMGIFMALQEKLIACGP +T+ G+VL
Sbjct: 240 WNLEMPSMLEGSIQIMSKAGTGTAMFSMGIFMALQEKLIACGPSMTLIGLVL 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2171392	351	PIN5 "AT5G16530" [Arabidopsis	0.613	0.447	0.664	1.3e-88
TAIR|locus:2038781	616	PIN4 "AT2G01420" [Arabidopsis	0.640	0.266	0.448	4.1e-62
TAIR|locus:2013975	640	PIN3 "AT1G70940" [Arabidopsis	0.640	0.256	0.412	2.9e-59
TAIR|locus:2201225	619	PIN7 "AT1G23080" [Arabidopsis	0.640	0.264	0.424	1.6e-58
TAIR|locus:2175559	647	EIR1 "AT5G57090" [Arabidopsis	0.636	0.251	0.418	1.5e-57
UNIPROTKB|Q5SMQ9	595	PIN1 "Auxin efflux carrier com	0.636	0.273	0.442	1.1e-56
TAIR|locus:2035037	622	PIN1 "AT1G73590" [Arabidopsis	0.636	0.262	0.448	2.7e-56
TAIR|locus:2025312	570	PIN6 "AT1G77110" [Arabidopsis	0.621	0.278	0.403	4.9e-51
TAIR|locus:2147835	367	PIN8 "AT5G15100" [Arabidopsis	0.601	0.419	0.360	4.1e-45

TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 105/158 (66%), Positives = 120/158 (75%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI   DVYKV+EAMVPLY AL+LGYGSVKWW I   ++C A+NR VCYFTLPLFTIEFT 
Sbjct:     1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
              VDPFN+NYR I AD +SK+IIV VLA WA  S N+  Y W IT+FSLCTLTNSLVVGVP
Sbjct:    61 HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYS-NKGSYCWSITSFSLCTLTNSLVVGVP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRS 158
             L K MYGQ AVD          I+WLT+ LFVLE+R++
Sbjct:   120 LAKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKA 157

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0080161 "auxin transmembrane transporter activity" evidence=IDA

GO:0080162 "intracellular auxin transport" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 4.1e-62, Sum P(2) = 4.1e-62
 Identities = 74/165 (44%), Positives = 108/165 (65%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A+VPLY A++L YGSV+WWKI +P++C+ +NRFV  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               DP+ +N+R + AD + K+I++ +LA WA  +KN S   W IT FSL TL N+LV+G+P
Sbjct:    61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSL-EWMITIFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LL  MYG  A            I+W T+ LF+ EYR +  + +E+
Sbjct:   120 LLIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQ 164

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 2.9e-59, Sum P(2) = 2.9e-59
 Identities = 68/165 (41%), Positives = 107/165 (64%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ +NRFV  F +PL +  F +
Sbjct:     1 MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               +P+ +N R I AD + K+I++ +L  WA  +++ S   W IT FSL TL N+LV+G+P
Sbjct:    61 TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSL-EWSITIFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LL  MYG+ +            I+W T+ LF+ E+R +  + +E+
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQ 164

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009606 "tropism" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0010082 "regulation of root meristem growth" evidence=IGI

GO:0048364 "root development" evidence=IGI;IMP

GO:0009630 "gravitropism" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009416 "response to light stimulus" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 1.6e-58, Sum P(2) = 1.6e-58
 Identities = 70/165 (42%), Positives = 107/165 (64%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI W D+Y V+ A++PLY A++L YGSV+WWKI +P++C+ +NRFV  F +PL +  F +
Sbjct:     1 MITWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               +P+ +N R I AD + KLI++ +L  WA  +++ S   W IT FSL TL N+LV+G+P
Sbjct:    61 SNNPYAMNLRFIAADTLQKLIMLTLLIIWANFTRSGSL-EWSITIFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LL  MYG+ +            I+W T+ LF+ EYR +  + +E+
Sbjct:   120 LLIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKILIMEQ 164

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0048364 "root development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
 Identities = 69/165 (41%), Positives = 104/165 (63%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI  +D+Y V+ AMVPLY A++L YGSV+WW I  P++C+ +NRFV  F +PL +  F +
Sbjct:     1 MITGKDMYDVLAAMVPLYVAMILAYGSVRWWGIFTPDQCSGINRFVAVFAVPLLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               DP+ +NY  + AD++ K++I+  L  W   S+  S   W IT FSL TL N+LV+G+P
Sbjct:    61 SNDPYAMNYHFLAADSLQKVVILAALFLWQAFSRRGSL-EWMITLFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LL+ MYG  + +          I+W T+ LF+ E+R  A++ + E
Sbjct:   120 LLRAMYGDFSGNLMVQIVVLQSIIWYTLMLFLFEFR-GAKLLISE 163

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000323 "lytic vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IMP;RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 380 (138.8 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 73/165 (44%), Positives = 104/165 (63%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A++L YGSVKWW+I  P++C+ +NRFV  F +PL +  F +
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               +P+ +N R I AD + KL+++ +L  W+  S+  S   W IT FSL TL N+LV+G+P
Sbjct:    61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSL-EWTITLFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LLK MYG+ +            I+W T+ LF+ EYR  AR+ + E
Sbjct:   120 LLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYR-GARMLITE 163

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 2.7e-56, Sum P(2) = 2.7e-56
 Identities = 74/165 (44%), Positives = 104/165 (63%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI   D Y V+ AMVPLY A++L YGSVKWWKI  P++C+ +NRFV  F +PL +  F  
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIA 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
               +P+ +N R + AD++ K+I++ +L  W   S+N S   W IT FSL TL N+LV+G+P
Sbjct:    61 ANNPYAMNLRFLAADSLQKVIVLSLLFLWCKLSRNGSL-DWTITLFSLSTLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARIDLEE 165
             LLK MYG  + D          I+W T+ LF+ EYR  A++ + E
Sbjct:   120 LLKGMYGNFSGDLMVQIVVLQCIIWYTLMLFLFEYR-GAKLLISE 163

GO:0005215 "transporter activity" evidence=ISS;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0048825 "cotyledon development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0010338 "leaf formation" evidence=IGI

GO:0010358 "leaf shaping" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048364 "root development" evidence=IMP;RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 4.9e-51, Sum P(2) = 4.9e-51
 Identities = 65/161 (40%), Positives = 96/161 (59%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI   + Y V+ AM PLYFA+ + YGSVKW KI  P +C+ +NRFV  F +P+ +  F +
Sbjct:     1 MITGNEFYTVMCAMAPLYFAMFVAYGSVKWCKIFTPAQCSGINRFVSVFAVPVLSFHFIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
             Q +P+ ++   I AD +SK+ +  +L+ WA+  K      W IT FS+ TL N+LV+G+P
Sbjct:    61 QNNPYKMDTMFILADTLSKIFVFVLLSLWAVFFKAGGL-DWLITLFSIATLPNTLVMGIP 119

Query:   121 LLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLEYRRSARI 161
             LL+ MYG               I+W T+ LF+ E R +AR+
Sbjct:   120 LLQAMYGDYTQTLMVQLVVLQCIIWYTLLLFLFELR-AARL 159

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 57/158 (36%), Positives = 91/158 (57%)

Query:     1 MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
             MI W D+Y VV A VPLY ++ LG+ S +  K+ +PE+CA +N+FV  F++PL + +  +
Sbjct:     1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query:    61 QVDPFNLNYRLIGADAISKLIIVFVLA----FWAMCSKNESCYSWCITNFSLCTLTNSLV 116
             + +PF ++ +LI +D + K ++V VLA    FW           W IT  S+  L N+L+
Sbjct:    61 ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query:   117 VGVPLLKPMYGQMAVDXXXXXXXXXXILWLTIFLFVLE 154
             +G+P+L  +YG  A            ++W TI LF+ E
Sbjct:   121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFE 158

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5JLM1	PIN6_ORYSJ	No assigned EC number	0.5333	1.0	0.7052	yes	no
Q9FFD0	PIN8_ARATH	No assigned EC number	0.6532	0.9960	0.7264	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025108001 SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	7e-46
TIGR00946	321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	9e-28
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	3e-07

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  155 bits (394), Expect = 7e-46
 Identities = 67/250 (26%), Positives = 113/250 (45%), Gaps = 4/250 (1%)

Query: 10  VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNLNY 69
           VVEA++P++  ++LGY + K   I+ P++ + +N+ V YF LPL      +      +  
Sbjct: 2   VVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMIV 60

Query: 70  RLIGADAISKLIIVFVLAFWAMCSKNES-CYSWCITNFSLCTLTNSLVVGVPLLKPMYGQ 128
                  +  LI+   L    + SK       W           N+  +G+PLL  +YG+
Sbjct: 61  DFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYGE 120

Query: 129 MAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEG--HGRPSFWHLMKIVWPKMAKN 186
             +   + S VL  I+  T+  F++E R + R   EE           ++ +V  K+  N
Sbjct: 121 EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESGDTSGSMTLLILIVVLLKLILN 180

Query: 187 PNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACG 246
           P +YA +LGL    V     L  P  I+ SI I+  A    A+FS+G+ +AL +   + G
Sbjct: 181 PPTYASLLGLILGLVGFLLPLIFPEFIQDSISILGDAAIPMALFSLGLTLALGKLKSSLG 240

Query: 247 PKLTVFGMVL 256
                  ++L
Sbjct: 241 AATATIHLIL 250

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family

 Score =  107 bits (270), Expect = 9e-28
 Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 60/281 (21%)

Query: 1   MIGWEDVYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTT 60
           MI +  +  V+  +V +    +LG    K + I+  E  + +NRFV  F LPL      +
Sbjct: 1   MITYVILETVLPILVVILLGYILG----KRFGILDEEHASGINRFVINFALPLTIFHSIS 56

Query: 61  QVDPFNLNYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVP 120
                        AD + K     VL  W                FS  +     ++  P
Sbjct: 57  T----------TLADILQKSQSPVVLFLWG--------------AFSG-SYALIWLITKP 91

Query: 121 LLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSAR-------------------I 161
           L K  YG+++  L+V +    + +   + L +     +                     +
Sbjct: 92  LFKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGL 151

Query: 162 DLEEGHGRP------SFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEG 215
            L    G        S   ++  VW K+ K P  +A +L +  + V      KMP +I  
Sbjct: 152 FLVSEDGAGGEGSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVG----FKMPGLILK 207

Query: 216 SILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFGMVL 256
           SI I+S A T  A+FS+G  +AL  + I  G +  +  +++
Sbjct: 208 SISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIV 246

[Transport and binding proteins, Other]. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 46/234 (19%), Positives = 95/234 (40%), Gaps = 27/234 (11%)

Query: 10  VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDP-FNLN 68
           V E ++P++  ++LGY   ++  I+  E    ++R V Y  LP          D     +
Sbjct: 5   VFEVVLPIFLIILLGYLLKRFG-ILDEEAARGLSRLVVYVALPALLFNSIATADLSGLAD 63

Query: 69  YRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLT----NSLVVGVPLLKP 124
             LI A  ++ L+  F+LA           +        +  L     N   +G+P+   
Sbjct: 64  LGLIVASLVATLLAFFLLALIGR-----FLFKLDKRETVIFALASAFPNIGFLGLPVALS 118

Query: 125 MYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMA 184
           ++G+  +   V   ++   L  T+ + +L            G    S   ++K    K+ 
Sbjct: 119 LFGEKGLAYAVIFLIIGLFLMFTLGVILLARSG--------GGTNKSLLSVLK----KLL 166

Query: 185 KNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMAL 238
            NP   A ILGL          + +P+ ++ ++ +++ A +  A+ ++G+ +A 
Sbjct: 167 TNPLIIALILGLLLNL----LGISLPAPLDTAVDLLASAASPLALIALGLSLAF 216

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PRK09903	314	putative transporter YfdV; Provisional	100.0
COG0679	311	Predicted permeases [General function prediction o	100.0
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	99.97
KOG2722	408	consensus Predicted membrane protein [Function unk	99.75
TIGR00841	286	bass bile acid transporter. Functionally character	96.47
COG3329	372	Predicted permease [General function prediction on	96.02
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.94
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	95.03
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	94.0
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	92.35
COG0385	319	Predicted Na+-dependent transporter [General funct	91.74
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	88.24
COG2855	334	Predicted membrane protein [Function unknown]	85.49
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	81.38

>PRK09903 putative transporter YfdV; Provisional

Probab=100.00  E-value=2.4e-34  Score=256.52  Aligned_cols=216  Identities=19%  Similarity=0.291  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC-C-cHhHHHHHHHHHHHHHHH
Q 048649            8 YKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN-L-NYRLIGADAISKLIIVFV   85 (256)
Q Consensus         8 ~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~-l-~~~~i~~~~~~~l~~~~~   85 (256)
                      ...++.++|+|+++++||+++| +|+++||+.+.++|+++|+++||++|+++.+.+.++ . ++.......++.+..+++
T Consensus         3 ~~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (314)
T PRK09903          3 TFFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF   81 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            4678899999999999999999 799999999999999999999999999999886554 2 455554445555666666


Q ss_pred             HHHHHHHh-cCCcchhhhhhhhhccccccccchhhhhhhhhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 048649           86 LAFWAMCS-KNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQM---AVDLVVQSSVLQSILWLTIFLFVLEYRRSARI  161 (256)
Q Consensus        86 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  161 (256)
                      ++...|.. +++ .++.....+. ++++|+||+|+|+++++||++   ++.++.. ...++++.|+++++.++..+.++ 
T Consensus        82 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~~-  157 (314)
T PRK09903         82 SWFGCYKFFKRT-HAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAII-SIIVNAITIPIGLYLLNPSSGAD-  157 (314)
T ss_pred             HHHHHHHHhcCC-cchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHH-HHHHHHHHHHHHHHHHccccccc-
Confidence            66666543 433 3333334554 778999999999999999999   4544444 44578899999999887543211 


Q ss_pred             ccccCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccc
Q 048649          162 DLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEK  241 (256)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~  241 (256)
                            ++.+   ..++.+|+++|||+++|+++|++++.+    |+++|++++++++++|++++|++|+++|++|++.+.
T Consensus       158 ------~~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~  224 (314)
T PRK09903        158 ------GKKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF  224 (314)
T ss_pred             ------cccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                  0111   134667899999999999999999999    999999999999999999999999999999987643

>COG0679 Predicted permeases [General function prediction only]

Probab=100.00  E-value=9.4e-34  Score=252.22  Aligned_cols=215  Identities=21%  Similarity=0.369  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC-cHhHHHHHHHHHHHHHHH
Q 048649            7 VYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL-NYRLIGADAISKLIIVFV   85 (256)
Q Consensus         7 ~~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l-~~~~i~~~~~~~l~~~~~   85 (256)
                      |..+++.++|+++++++||+++| .+.+|++..+.++++++|+++||++|+++.+.+.++. +...+.....+++..++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL   80 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999 7999999999999999999999999999999988764 666666666777777777


Q ss_pred             HHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 048649           86 LAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE  165 (256)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  165 (256)
                      .+.+.|..+++++++.....++ +.++|++|+|+|+....|||+++.++++++..++...++.+.+.++..++++     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~-----  154 (311)
T COG0679          81 LALIGRFLFKLDKRETVIFALA-SAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT-----  154 (311)
T ss_pred             HHHHHHHHhccchhhHHHHHHH-HHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence            7777777655544444445555 8999999999999999999999999999999999999999999988776531     


Q ss_pred             CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhc
Q 048649          166 GHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQ  239 (256)
Q Consensus       166 ~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~  239 (256)
                         +    +..++..|++++||+++|.++|++++..    ++++|++++++++++|++++|++|+++|++|+..
T Consensus       155 ---~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~  217 (311)
T COG0679         155 ---N----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL  217 (311)
T ss_pred             ---h----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence               1    1257788999999999999999999999    9999999999999999999999999999999873

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=100.00  E-value=4.3e-34  Score=255.68  Aligned_cols=228  Identities=22%  Similarity=0.296  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHHHHHHhHhh-hhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCC--CC-cHhHHHHHHHHHHHHHH
Q 048649            9 KVVEAMVPLYFALMLGYGS-VKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPF--NL-NYRLIGADAISKLIIVF   84 (256)
Q Consensus         9 ~~~~~ilpi~lli~lG~~~-~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~--~l-~~~~i~~~~~~~l~~~~   84 (256)
                      .+++.++|+++++++||++ +| +|++|||+.+.++|+++|+++||++|+++.+.+.+  +. .+........+....++
T Consensus         5 ~~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (321)
T TIGR00946         5 VILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYA   83 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999 78 79999999999999999999999999999987664  22 34444333345556677


Q ss_pred             HHHHHHH-HhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 048649           85 VLAFWAM-CSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA---VDLVVQSSVLQSILWLTIFLFVLEYRRSAR  160 (256)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  160 (256)
                      +++..+| ..+++ .++.....++ +.++|++|+|+|+++.+|||++   ..++..++..+++..|++++.+.+..+.++
T Consensus        84 l~~~~~~~~~~~~-~~~~~~~~~~-~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (321)
T TIGR00946        84 LIWLITKPLFKAD-YGKLSGFLLV-SALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG  161 (321)
T ss_pred             HHHHHHHHHHhcc-cchhhHHHHH-hhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence            7777788 44444 3343445555 8999999999999999999999   667777777888889999987654332100


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhcc
Q 048649          161 IDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQE  240 (256)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~  240 (256)
                      ++     ++.+.++..++.+|++++||+++|+++|++++.+    |+++|++++++++.+|++++|++|+++|++++..+
T Consensus       162 ~~-----~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~  232 (321)
T TIGR00946       162 EG-----SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK  232 (321)
T ss_pred             cc-----cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence            00     0112223345678999999999999999999999    99999999999999999999999999999997543


Q ss_pred             ceeeechhHH
Q 048649          241 KLIACGPKLT  250 (256)
Q Consensus       241 ~~~~~~~~~~  250 (256)
                        .++.++..
T Consensus       233 --~~~~~~~~  240 (321)
T TIGR00946       233 --IKLGVRDA  240 (321)
T ss_pred             --hccChHHH
Confidence              34444433

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=99.97  E-value=6.8e-30  Score=233.47  Aligned_cols=239  Identities=22%  Similarity=0.322  Sum_probs=181.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCC-CCC-CcHhHHHH-HHHHHHHHHHHH
Q 048649           10 VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVD-PFN-LNYRLIGA-DAISKLIIVFVL   86 (256)
Q Consensus        10 ~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~-~~~-l~~~~i~~-~~~~~l~~~~~~   86 (256)
                      +++.++|+++++++||+++| +|++++++.+.++++++|+++||++|.++.+.+ .++ .+++++.. ..+..++.++++
T Consensus         2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999 699999999999999999999999999999865 333 35544433 234444555566


Q ss_pred             HHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc----
Q 048649           87 AFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARID----  162 (256)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----  162 (256)
                      +++.|+.+.++.++ .....+ ++++|++++|+|+++++||+++..|+.+++..+++..|+++..+++..+++++.    
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~-~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFRLPKEWR-GVFVLA-ASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcCCCcccc-eEEEec-ccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            66777555442322 333343 789999999999999999999999999999999999999999988765432110    


Q ss_pred             -----------c-------ccCC-----------------------------C----C-----------ChhHHHHHHHH
Q 048649          163 -----------L-------EEGH-----------------------------G----R-----------PSFWHLMKIVW  180 (256)
Q Consensus       163 -----------~-------~~~~-----------------------------~----~-----------~~~~~~~~~~~  180 (256)
                                 .       ++++                             +    +           ...++..++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI  238 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence                       0       0000                             0    0           00112234567


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeechhHHh
Q 048649          181 PKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTV  251 (256)
Q Consensus       181 ~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~~~~~  251 (256)
                      ++.++||+++|.++|+++++.+....+.+|+++.++++.+|++++|++|+++|+++++.++...|+.+...
T Consensus       239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~  309 (385)
T PF03547_consen  239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSI  309 (385)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHH
Confidence            88899999999999999999933333334499999999999999999999999999987766677777653

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=99.75  E-value=1.4e-18  Score=152.78  Aligned_cols=224  Identities=14%  Similarity=0.176  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHhHhhhhhc--cccChhhhHHHHHHHHHHHHHHHHHHHhccC-CCCC-CcHhHHHHH-HHHHHHHHHHH
Q 048649           12 EAMVPLYFALMLGYGSVKWW--KIIAPEECAAVNRFVCYFTLPLFTIEFTTQV-DPFN-LNYRLIGAD-AISKLIIVFVL   86 (256)
Q Consensus        12 ~~ilpi~lli~lG~~~~r~~--~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~-~~~~-l~~~~i~~~-~~~~l~~~~~~   86 (256)
                      ..++.++++-.+||++.+ .  ++++++.+|.+|++++|++.||++|..+.+. +.++ ++|+++.+. .+...+..+++
T Consensus        15 ~pvlqvl~i~~~G~~lA~-~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG   93 (408)
T KOG2722|consen   15 MPVLQVLLITLVGFLLAS-DYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG   93 (408)
T ss_pred             ccHHHHHHHHHHHHHHhc-cccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            578889999999998876 5  9999999999999999999999999999885 5666 488888654 45666777888


Q ss_pred             HHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhh-------cCCc------hhHHHHHHHHHHHHHHHHHHHHHH
Q 048649           87 AFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPM-------YGQM------AVDLVVQSSVLQSILWLTIFLFVL  153 (256)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l-------~G~~------~~~~~~~~~~~~~~~~~~~~~~l~  153 (256)
                      |++.|..|.++..+..+.  +|+.++|.+++.+.++.++       ||+.      |+.|+++......+..|++++-++
T Consensus        94 ~lv~~I~rppp~~~~fii--a~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~  171 (408)
T KOG2722|consen   94 WLVVKILRPPPQLRGFII--ACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRML  171 (408)
T ss_pred             HHHhheecCChhhcCeEE--EEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeee
Confidence            888898877655443333  3589999999999999999       4532      678888888888888888887432


Q ss_pred             hhhhcc----------------------cccccc------------C------CCCCh-hH---HHHHHHHHHHhhchhH
Q 048649          154 EYRRSA----------------------RIDLEE------------G------HGRPS-FW---HLMKIVWPKMAKNPNS  189 (256)
Q Consensus       154 ~~~~~~----------------------~~~~~~------------~------~~~~~-~~---~~~~~~~~~i~~nP~i  189 (256)
                      .....+                      +++.|+            +      +++.. +|   ...+..+|+++ +|+.
T Consensus       172 ~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L~~i~-~Ppt  250 (408)
T KOG2722|consen  172 LPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVILKEIF-APPT  250 (408)
T ss_pred             cCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhHHHhc-CchH
Confidence            221100                      000000            0      00100 01   12345556654 9999


Q ss_pred             HHHHHHHHHHHhhhhcC----CCCc-HHHHHHHHHHHhhHHHHHHHHHhHHhhhc
Q 048649          190 YACILGLAWAFVAHRWH----LKMP-SIIEGSILIMSRAGTGTAMFSMGIFMALQ  239 (256)
Q Consensus       190 ~a~i~Gl~~~~~~~~~~----i~lP-~~l~~~l~~lg~~~~plaL~~iG~~L~~~  239 (256)
                      +|.++|+++...+.-+.    -.-| +.+.++++.+|+.++|+.++++|.+|.+.
T Consensus       251 ia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g  305 (408)
T KOG2722|consen  251 IAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQG  305 (408)
T ss_pred             HHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccC
Confidence            99999999987743111    1112 58899999999999999999999999753

>TIGR00841 bass bile acid transporter

Probab=96.47  E-value=0.053  Score=47.85  Aligned_cols=80  Identities=9%  Similarity=-0.007  Sum_probs=50.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 048649           69 YRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTI  148 (256)
Q Consensus        69 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~  148 (256)
                      +.......+-.++.|.+++.++|..+.+..++.+ .++. +..-|++ +|+++....|+++....+..+.+.+++....+
T Consensus       195 ~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t-~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~  271 (286)
T TIGR00841       195 PLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRT-ISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAF  271 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhhee-eeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            3333333445566678888888876554222322 3454 6778887 99999999998666555666666665555444


Q ss_pred             HHH
Q 048649          149 FLF  151 (256)
Q Consensus       149 ~~~  151 (256)
                      +.+
T Consensus       272 a~~  274 (286)
T TIGR00841       272 ALL  274 (286)
T ss_pred             HHH
Confidence            433

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG3329 Predicted permease [General function prediction only]

Probab=96.02  E-value=1  Score=39.93  Aligned_cols=220  Identities=12%  Similarity=0.038  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccC---CCCCCcHhHHHHHHHHHHHHHHHHHH
Q 048649           12 EAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQV---DPFNLNYRLIGADAISKLIIVFVLAF   88 (256)
Q Consensus        12 ~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~---~~~~l~~~~i~~~~~~~l~~~~~~~~   88 (256)
                      |..-|..+....|.+..- .| -|-+.-+.+.+-.....+=|.=|+.=.+.   ++++.-.....+..++.++.+...+.
T Consensus        14 nL~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~   91 (372)
T COG3329          14 NLLSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFL   91 (372)
T ss_pred             hhccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            455677788888887654 23 33344455555555555555555543232   23322223333444555555555555


Q ss_pred             HHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccc---
Q 048649           89 WAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAV---DLVVQSSVLQSILWLTIFLFVLEYRRSARID---  162 (256)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---  162 (256)
                      +.|+.+-|.....+   .+ ..|+...-.-+.-..+...+.+.   .|+.....+.-+.-..+++.+.+.+..++.+   
T Consensus        92 l~kl~~vdtvdaaA---~a-g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~a  167 (372)
T COG3329          92 LRKLPKVDTVDAAA---TA-GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAA  167 (372)
T ss_pred             HHHccccchHHHHH---HH-hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccc
Confidence            56655555222222   22 45666655555555555544433   3443333332222223344443322111111   


Q ss_pred             -----------ccc------C---------CCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHH
Q 048649          163 -----------LEE------G---------HGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGS  216 (256)
Q Consensus       163 -----------~~~------~---------~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~  216 (256)
                                 .|.      +         +...+.+-..|+.++..+.||-+...+.|+++.+..   |.+=-+.+.+.
T Consensus       168 a~~~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGlit---Ge~g~~vl~~F  244 (372)
T COG3329         168 AEAHSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLIT---GEQGESVLKPF  244 (372)
T ss_pred             cccccccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhee---ccCchhhhhhh
Confidence                       000      0         001112234578899999999999999999998873   33333445556


Q ss_pred             HHHHHhhHHHHHHHHHhHHhhhcc
Q 048649          217 ILIMSRAGTGTAMFSMGIFMALQE  240 (256)
Q Consensus       217 l~~lg~~~~plaL~~iG~~L~~~~  240 (256)
                      .+-+=+-..-+-|+.+|+.-.++.
T Consensus       245 ~~~lFqGvL~lflL~MGm~A~rrl  268 (372)
T COG3329         245 FDPLFQGVLCLFLLDMGMTAGRRL  268 (372)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHH
Confidence            666667778888889999876543

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.94  E-value=0.77  Score=40.99  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=42.1

Q ss_pred             ch-hHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeechhHH
Q 048649          186 NP-NSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLT  250 (256)
Q Consensus       186 nP-~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~~~~  250 (256)
                      -| .+++.++..+++-.     ..+|+.+.+.++.+++...-++|..+|.+.+..+ ..+.|.+..
T Consensus       243 ~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~-l~~~G~kpl  302 (305)
T PF03601_consen  243 FPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKD-LKQVGWKPL  302 (305)
T ss_pred             cCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHhcCccce
Confidence            44 45666666666543     3467888999999999999999999999986433 344555543

; GO: 0016021 integral to membrane

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=95.03  E-value=1.8  Score=38.74  Aligned_cols=224  Identities=15%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHH---hccCCCCCCcHhHHHHHHHHHHHHHHHHHHHHHH
Q 048649           16 PLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEF---TTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMC   92 (256)
Q Consensus        16 pi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~---~~~~~~~~l~~~~i~~~~~~~l~~~~~~~~~~~~   92 (256)
                      |..+...+|.++.. .| -|-+.-+.+.|++--+.+=+.=++.   +.+.+++++......+..++.++-. .++.+-|.
T Consensus         1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl-~~~~iLr~   77 (327)
T PF05982_consen    1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPL-IAFPILRR   77 (327)
T ss_pred             CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            45566777887754 23 3445556777776666665555553   2333333322223333333333332 33333343


Q ss_pred             -hcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccc---ccc
Q 048649           93 -SKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAV---DLVVQSSVLQSILWLTIFLFVLEYRRSARID---LEE  165 (256)
Q Consensus        93 -~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~  165 (256)
                       .|-+ ..++.  +.+ +.|+...-.-+....+...++++   .|...+....-..--.+++.+.+..+.++.+   .++
T Consensus        78 ~~~l~-~~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~  153 (327)
T PF05982_consen   78 LGKLD-RADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS  153 (327)
T ss_pred             ccCCC-hhhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence             3434 22322  233 56777666666666666654444   3444444333333344566665443222110   000


Q ss_pred             -------CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCC-CcHHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 048649          166 -------GHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLK-MPSIIEGSILIMSRAGTGTAMFSMGIFMA  237 (256)
Q Consensus       166 -------~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~-lP~~l~~~l~~lg~~~~plaL~~iG~~L~  237 (256)
                             ++++.+    +++.+++.++|+-+.-.+.|+++.+.....+.+ +-++..+.++    -..-+-|+-+|+.=.
T Consensus       154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G~L~lFLLeMGl~A~  225 (327)
T PF05982_consen  154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----GVLCLFLLEMGLVAA  225 (327)
T ss_pred             ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----HHHHHHHHHhhHHHH
Confidence                   112222    688899999999999999999998873322221 2123333333    333344444454444


Q ss_pred             hc-cceeeechhHHhHhh
Q 048649          238 LQ-EKLIACGPKLTVFGM  254 (256)
Q Consensus       238 ~~-~~~~~~~~~~~~~~~  254 (256)
                      ++ ++.-+.|+....+|.
T Consensus       226 ~rL~~l~~~g~~li~Fgi  243 (327)
T PF05982_consen  226 RRLRDLRKVGWFLIAFGI  243 (327)
T ss_pred             HhhHHHHhhhHHHHHHHH
Confidence            33 233344666555554

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=94.00  E-value=0.41  Score=43.29  Aligned_cols=101  Identities=9%  Similarity=0.040  Sum_probs=66.7

Q ss_pred             HHHHHHHhHhhhhhccccChhh---hHHHHHHHHHHHHHHHHH-HHhccCCCCC----CcHhHHHHHHHHHHHHHHHHHH
Q 048649           17 LYFALMLGYGSVKWWKIIAPEE---CAAVNRFVCYFTLPLFTI-EFTTQVDPFN----LNYRLIGADAISKLIIVFVLAF   88 (256)
Q Consensus        17 i~lli~lG~~~~r~~~~~~~~~---~~~l~~lv~~v~lP~lif-~~~~~~~~~~----l~~~~i~~~~~~~l~~~~~~~~   88 (256)
                      ...++.+|.+++. .|+++++-   .+...|++.+..++.++. .++..+|+++    +++..+.....+.+...+.+++
T Consensus       207 ~v~mII~~vi~k~-~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l  285 (347)
T TIGR00783       207 YAFMILIAAALKA-FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF  285 (347)
T ss_pred             HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence            5678889999988 89999854   455666666666666665 5777777765    2455555444455555566777


Q ss_pred             HHHHhcCCcchhhhhhhhhccccccccchh
Q 048649           89 WAMCSKNESCYSWCITNFSLCTLTNSLVVG  118 (256)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG  118 (256)
                      ++|+.+--|.+.+...+++.+..+.+|.++
T Consensus       286 vGKllG~YPiE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence            899887765555444455445666666664

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=92.35  E-value=9  Score=35.28  Aligned_cols=72  Identities=19%  Similarity=0.157  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC---CcHhHHHHHHHHHHHH
Q 048649           10 VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN---LNYRLIGADAISKLII   82 (256)
Q Consensus        10 ~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~---l~~~~i~~~~~~~l~~   82 (256)
                      .+..+-|..+.+.+|.++.. .|++|.+..+...+.+..+.+|..++.-+.+.|+.+   ...+.+..+.++...+
T Consensus        21 ~f~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~   95 (378)
T PF05684_consen   21 FFKYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGT   95 (378)
T ss_pred             hHhhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHH
Confidence            45677788899999999998 899955556678899999999999999999998775   3566666665544443

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=91.74  E-value=3.7  Score=36.81  Aligned_cols=122  Identities=12%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             HHHhHhhhhhccccChhhhHHHHH---HHHHHHHHHHHHHHhccCC--CCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 048649           21 LMLGYGSVKWWKIIAPEECAAVNR---FVCYFTLPLFTIEFTTQVD--PFNLNYRLIGADAISKLIIVFVLAFWAMCSKN   95 (256)
Q Consensus        21 i~lG~~~~r~~~~~~~~~~~~l~~---lv~~v~lP~lif~~~~~~~--~~~l~~~~i~~~~~~~l~~~~~~~~~~~~~~~   95 (256)
                      +.+|-.++++   ++ +..+...+   .+-...+=+.++...+...  ..+.......+..+-..+.+..+|..+|..+.
T Consensus       174 ~~LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~  249 (319)
T COG0385         174 FVLGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGF  249 (319)
T ss_pred             HHHHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6677777552   22 22222222   2334444444444444331  11112222222233445567788888998765


Q ss_pred             CcchhhhhhhhhccccccccchhhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHH
Q 048649           96 ESCYSWCITNFSLCTLTNSLVVGVPLLKPMYG-QMAVDLVVQSSVLQSILWLTIF  149 (256)
Q Consensus        96 ~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G-~~~~~~~~~~~~~~~~~~~~~~  149 (256)
                      ++..+.+ .++. ...-|.+ .|.|+....++ ++...+..++...|++....++
T Consensus       250 ~~a~~it-i~ie-~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la  301 (319)
T COG0385         250 DKADEIT-IAIE-GGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLA  301 (319)
T ss_pred             Chhheee-EEEe-eccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            5333322 3453 6667764 89999999556 4445566677777765443333

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=88.24  E-value=8.1  Score=34.56  Aligned_cols=105  Identities=15%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             HHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccC---CC-CCCcHhHHHHHHHHHHH----HHHHHHHHHHH
Q 048649           21 LMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQV---DP-FNLNYRLIGADAISKLI----IVFVLAFWAMC   92 (256)
Q Consensus        21 i~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~---~~-~~l~~~~i~~~~~~~l~----~~~~~~~~~~~   92 (256)
                      ..+|-.++|+.+-.-+. .+...+.+-...+-..++.++.+.   +. ++.+...+.........    .+.+++..+|.
T Consensus       171 ~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~r~  249 (313)
T PF13593_consen  171 LVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAARL  249 (313)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            67788876632211112 234455556667777777766554   22 22333222221111112    22344556676


Q ss_pred             hcCCcchhhhhhhhhccccccccchhhhhhhhhcCCc
Q 048649           93 SKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQM  129 (256)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~  129 (256)
                      .+-+++++ ....+  +.-..+.-.|.|+...+|++.
T Consensus       250 ~~~~~~d~-iA~~F--~gs~Ksl~~gvpl~~~lf~~~  283 (313)
T PF13593_consen  250 LGFSRPDR-IAVLF--CGSQKSLALGVPLASILFPGH  283 (313)
T ss_pred             cCCChhhE-EEEEE--EcCcCcchhHHHHHHHHcccc
Confidence            54332222 11234  344666789999999999875

>COG2855 Predicted membrane protein [Function unknown]

Probab=85.49  E-value=28  Score=31.48  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             CCcHHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 048649          208 KMPSIIEGSILIMSRAGTGTAMFSMGIFMA  237 (256)
Q Consensus       208 ~lP~~l~~~l~~lg~~~~plaL~~iG~~L~  237 (256)
                      .+|+.+.+.++.++....-.+|-++|.+.+
T Consensus       271 ~iP~~~~~~~~~lst~ll~~aMaAlGL~t~  300 (334)
T COG2855         271 LIPAEVVSALVTLSTFLLAMAMAALGLTTH  300 (334)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            489999999999999999999999999875

>TIGR00832 acr3 arsenical-resistance protein

Probab=81.38  E-value=9  Score=34.51  Aligned_cols=50  Identities=12%  Similarity=0.091  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch
Q 048649           78 SKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA  130 (256)
Q Consensus        78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~  130 (256)
                      -..+.+.+++..+|..+.++.++ ....+. +..-|. -+|+++....||+..
T Consensus       255 ~~~~~~~lg~~~~r~~~l~~~~~-~a~~~e-~g~qN~-~lai~lA~~~f~~~~  304 (328)
T TIGR00832       255 YFYIMFFLTFALAKKLGLPYSIT-APAAFT-GASNNF-ELAIAVAISLFGLNS  304 (328)
T ss_pred             HHHHHHHHHHHHHHHhCcChhhh-hhheeh-hhhhhH-HHHHHHHHHhCCCCc
Confidence            34556677788888865542323 223453 555665 599999999998743

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	95.18

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=95.18  E-value=0.29  Score=42.89  Aligned_cols=65  Identities=14%  Similarity=-0.025  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch--hHHHHHHHHHHHHH
Q 048649           77 ISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA--VDLVVQSSVLQSIL  144 (256)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~--~~~~~~~~~~~~~~  144 (256)
                      +-..+.|.+++..+|..+.++. +....++. +..-|+ -+|+|+....||++.  .....+|...|++.
T Consensus       236 l~~~~~~~lg~~~~r~~~~~~~-~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~  302 (332)
T 3zux_A          236 LHNGIGYLLGFFAAKWTGLPYD-AQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNIS  302 (332)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHH-HHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHh-Hhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            3445566778888888765533 32334454 566777 599999999996433  33445555555443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00